Pregenerated sensors for NR0B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037583Ensembl transcript IDs: ENSMUST00000042706.3
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTaGAGGTTTGGGGAGTCATCAAGGGCTTGCTGGACAGTTAGTAGT | + |
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Preference number: 1 (lower is better) Translates to: LPAPIPTQAGKDILA*RFGESSRACWTVSS Trigger: ACTACTAACTGTCCAGCAAGCCCTTGATGACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR GCA 90 bp | TCTGTACAAAGTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTaGTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAG | + |
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Preference number: 1 (lower is better) Translates to: SVQSQEGFWLESTAS*SHPYPGRERHFGLE Trigger: CTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGACTTTGTACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR CCA 90 bp | AAAGACATTTTGGCCTGGAGGTTTGGGGAGTCATCAAGGGCTTGCTaGACAGTTAGTAGTGTACACTGTATCCAAAGCAAGGAAGTCCGA | + |
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Preference number: 1 (lower is better) Translates to: KDILAWRFGESSRAC*TVSSVHCIQSKEVR Trigger: TCGGACTTCCTTGCTTTGGATACAGTGTACACTACTAACTGTCCAGCAAGCCCTTGATGACTCCCCAAACCTCCAGGCCAAAATGTCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR-3UTR TCA 90 bp | CAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGCCAGCTCCAGGGGAGTTaGGGGCTGCCTTTCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: QEGFWLESTASCSHPYPGQLQGS*GLPFRL Trigger: GAGCCTGAAAGGCAGCCCTCAACTCCCCTGGAGCTG...GCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR CAA 90 bp | CTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTTaGGGGAGTCATCAAGGGCTTGCTGGACAGTTAGTAGTGTACACT | + |
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Preference number: 2 (lower is better) Translates to: LPSLPRQGKTFWPGG*GSHQGLAGQLVVYT Trigger: AGTGTACACTACTAACTGTCCAGCAAGCCCTTGATGACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR-3UTR CCA 90 bp | TTTAGTTCTGTACAAAGTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCCAGGGAAAGACATTTTaGCCTGGAGGTTTGGGGAGT | + |
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Preference number: 2 (lower is better) Translates to: FSSVQSQEGFWLESTASCQGKTF*PGGLGS Trigger: ACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTG...GCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGACTTTGTACAGAACTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR-3UTR CAA 90 bp | GCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTTCTTTCAGGCTCCCCTTaGGAGGCACCAGACTCCATT | + |
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Preference number: 3 (lower is better) Translates to: ASCSHPYPGRERHFGLEVLSGSP*EAPDSI Trigger: AATGGAGTCTGGTGCCTCCAAAGGGGAGCCTGAAAG...AACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR CCA 72 bp | CCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTaGAGGTTTGGGGAGTCATCAAGGGCTTGCTGGACA | + |
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Preference number: 3 (lower is better) Translates to: PIPTQAGKDILA*RFGESSRACWT Trigger: TGTCCAGCAAGCCCTTGATGACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR CCA 72 bp | CTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTaGCCTGGAGGTTTGGGGAGTCATCAAGGGCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: LLPSLPRQGKTF*PGGLGSHQGLA Trigger: AGCAAGCCCTTGATGACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | AGCAAGGAAGTCCGAGCTAGGGGTGTGGCTGAGCTGAGGGCAGCTCCAGGGGAGCATCCAAGGCCTCCCTaGAGGTGCGGTGCGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: SKEVRARGVAELRAAPGEHPRPP*RCGAEH Trigger: GTGCTCCGCACCGCACCTGCAGGGAGGCCTTGGATG...CTCCCCTGGAGCTGCCCTCAGCTCAGCCACACCCCTAGCTCGGACTTCCTTGCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | GTTGAGGGCTGCCTTTCAGGCTCCCCTTTGGAGGCACCAGACTCCATTCCACGGAGGCCTCCCTGCAGGTaGGGTGCGGAGCACACAGAC | + |
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Preference number: 4 (lower is better) Translates to: VEGCLSGSPLEAPDSIPRRPPCR*GAEHTD Trigger: GTCTGTGTGCTCCGCACCGCACCTGCAGGGAGGCCT...CCGTGGAATGGAGTCTGGTGCCTCCAAAGGGGAGCCTGAAAGGCAGCCCTCAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | CAGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGGCGGCCTTGGCTGGCTaGGTACCAGGGCTCCAAGAC | + |
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Preference number: 4 (lower is better) Translates to: QLPAPIPTQAGKDILAWRAALAG*VPGLQD Trigger: GTCTTGGAGCCCTGGTACCCAGCCAGCCAAGGCCGC...CCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | CAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGCCCAGGCGGCCTTGGCTaGCTGGGTACCAGGGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: QEGFWLESTASCSHPYPGPGGLG*LGTRAP Trigger: TGGAGCCCTGGTACCCAGCCAGCCAAGGCCGCCTGG...GCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | AGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTCAACGGGCCTGGTCCTaGGGCTGGGGCTCAGAAGTG | + |
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Preference number: 4 (lower is better) Translates to: SFLLPSLPRQGKTFWPGGQRAWS*GWGSEV Trigger: CACTTCTGAGCCCCAGCCCCAGGACCAGGCCCGTTG...ACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | CAGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGCTCCTGTTGCAGGTGTaGGATGTGGCAGGAGGCACG | + |
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Preference number: 4 (lower is better) Translates to: QLPAPIPTQAGKDILAWRLLLQV*DVAGGT Trigger: CGTGCCTCCTGCCACATCGCACACCTGCAACAGGAG...CCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | CCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTTTGGGAATAGTCGGACGACCTaGAGAGCCCTGGCATGGGCA | + |
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Preference number: 4 (lower is better) Translates to: PAPIPTQAGKDILAWRFGNSRTT*RALAWA Trigger: TGCCCATGCCAGGGCTCTGCAGGTCGTCCGACTATT...CCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR TCA 90 bp | TCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTTTGGGGAGTCTCACACAGTGCCCAGTaGGCCTCCTGTTGCAGGTGT | + |
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Preference number: 4 (lower is better) Translates to: SHPYPGRERHFGLEVWGVSHSAQ*ASCCRC Trigger: ACACCTGCAACAGGAGGCTCACTGGGCACTGTGTGA...GACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | GGCTTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTGCTGTGAGATGCAGGTaGAACGGGCCTGGTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GLKVQLPAPIPTQAGKDIAVRCR*NGPGPG Trigger: CCCAGGACCAGGCCCGTTGCACCTGCATCTCACAGC...AATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | GTTCTGTACAAAGTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCTCCCCGCACAGGCCGCTGCTaGTGGCACAGGCAGTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VLYKVRRDSGLKVQLPAPRTGRC*WHRQWL Trigger: CAGCCACTGCCTGTGCCAGCAGCAGCGGCCTGTGCG...GGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGACTTTGTACAGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | GTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGCACCCTGGGTACCGCTaGTGGCTTCCTCTAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: VRRDSGLKVQLPAPIPTQHPGYR*WLPLAG Trigger: TCCTGCTAGAGGAAGCCAGCAGCGGTACCCAGGGTG...CTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | GTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGGAGGCACGGAGGCCTaGCACATCTGGGTTGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: VRRDSGLKVQLPAPIPTQGGTEA*HIWVEE Trigger: CTCTTCAACCCAGATGTGCCAGGCCTCCGTGCCTCC...CTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR CAA 72 bp | CCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTaGGCCTGGAGGTTTGGGGAGTCATCAAGGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: PAPIPTQAGKDI*AWRFGESSRAC Trigger: GCAAGCCCTTGATGACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | AGCTCCAGGGGAGTTGAGGGCTGCCTTTCAGGCTCCCCTTTGGAGGCACCAGACTACCAGAAGGGTGCCTaGAATGTTCTTGAGGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SSRGVEGCLSGSPLEAPDYQKGA*NVLEGR Trigger: TCTACCCTCAAGAACATTCCAGGCACCCTTCTGGTA...GTCTGGTGCCTCCAAAGGGGAGCCTGAAAGGCAGCCCTCAACTCCCCTGGAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | TTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCAGTGGCTGTGAGATaGAGGTGCAACGGGCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LKVQLPAPIPTQAGKDILAVAVR*RCNGPG Trigger: ACCAGGCCCGTTGCACCTGCATCTCACAGCCACTGC...CAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | TTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGTCCTGGGGCTaGGGCTCAGAAGTGCATACA | + |
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Preference number: 4 (lower is better) Translates to: LKVQLPAPIPTQAGKDILAWSWG*GSEVHT Trigger: TGTATGCACTTCTGAGCCCCAGCCCCAGGACCAGGC...CAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | CAGTTAGTAGTGTACACTGTATCCAAAGCAAGGAAGTCCGAGCTAGGGGTGTGGTCCTCATGGGGCAGGTaGCAGAAGGACGGCAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: QLVVYTVSKARKSELGVWSSWGR*QKDGRF Trigger: GAACCTGCCGTCCTTCTGCCACCTGCCCCATGAGGA...CCACACCCCTAGCTCGGACTTCCTTGCTTTGGATACAGTGTACACTACTAACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR TCA 90 bp | GTTCTGTACAAAGTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCTCCCAGGACGGCAGGTTCCTaGGGAAGGCTACTGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: VLYKVRRDSGLKVQLPAPRTAGS*GRLLSW Trigger: CCAAGACAGTAGCCTTCCTCAGGAACCTGCCGTCCT...GGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGACTTTGTACAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR CAA 72 bp | CTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTTaGGGGAGTCATCAAGGGCTTGCTGGACAGTTAGTA | + |
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Preference number: 4 (lower is better) Translates to: LPRQGKTFWPGG*GSHQGLAGQLV Trigger: TACTAACTGTCCAGCAAGCCCTTGATGACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | AATTTAGTTCTGTACAAAGTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTCAGGTGCAACGGGCCTaGTCCTGGGGCTGGGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: NLVLYKVRRDSGLKVQLPQVQRA*SWGWGS Trigger: TGAGCCCCAGCCCCAGGACCAGGCCCGTTGCACCTG...AGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGACTTTGTACAGAACTAAATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | TGCTGGACAGTTAGTAGTGTACACTGTATCCAAAGCAAGGAAGTCCGAGCTAGGGGTACGCATACTCCTTaGGACCCAGCTCAAGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: CWTVSSVHCIQSKEVRARGTHTP*DPAQGS Trigger: GGAGCCTTGAGCTGGGTCCCAAGGAGTATGCGTACC...CCTAGCTCGGACTTCCTTGCTTTGGATACAGTGTACACTACTAACTGTCCAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR GCA 90 bp | CAGTTAGTAGTGTACACTGTATCCAAAGCAAGGAAGTCCGAGCTAGGGGTGTGGGCTGGGGCTCAGAAGTaGATACAGAATAGTCGGACG | + |
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Preference number: 4 (lower is better) Translates to: QLVVYTVSKARKSELGVWAGAQK*IQNSRT Trigger: CGTCCGACTATTCTGTATGCACTTCTGAGCCCCAGC...CCACACCCCTAGCTCGGACTTCCTTGCTTTGGATACAGTGTACACTACTAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| 3UTR CAA 72 bp | AATTTAGTTCTGTACAAAGTCAGGAGGGATTCTGGCTaGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAG | + |
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Preference number: 4 (lower is better) Translates to: NLVLYKVRRDSG*KVQLPAPIPTQ Trigger: CTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGACTTTGTACAGAACTAAATT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CCA 90 bp | AATTTAGTTCTGTACAAAGTCAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGGAAGGCTACTGTCTTaGCTAGGACATCCAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: NLVLYKVRRDSGLKVQLPGRLLS*LGHPRP Trigger: AGGCCTTGGATGTCCTAGCCAAGACAGTAGCCTTCC...AGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTGACTTTGTACAGAACTAAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS GCA 90 bp | CAGACGCACAGGCCGCTGCTGCTGGCACAGGCAGTGGCTGTGAGATaGAGGTGCAACGGGCCTGGTCCTGGGGCTGGGGCTCAGAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: QTHRPLLLAQAVAVR*RCNGPGPGAGAQKC Trigger: GCACTTCTGAGCCCCAGCCCCAGGACCAGGCCCGTTGCACCTGCATCTCACAGCCACTGCCTGTGCCAGCAGCAGCGGCCTGTGCGTCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS GCA 90 bp | GCTACTGTCTTGGCTAGGACATCCAAGGCCTCCCTGCAGGTGCGGTaGGGAGCACACAGACGCACAGGCCGCTGCTGCTGGCACAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: ATVLARTSKASLQVR*GAHRRTGRCCWHRQ Trigger: CTGCCTGTGCCAGCAGCAGCGGCCTGTGCGTCTGTGTGCTCCGCACCGCACCTGCAGGGAGGCCTTGGATGTCCTAGCCAAGACAGTAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS GCA 90 bp | GGAAGGCTACTGTCTTGGCTAGGACATCCAAGGCCTCCCTGCAGGTaGGGTGCGGAGCACACAGACGCACAGGCCGCTGCTGCTGGCACA | + |
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Preference number: 5 (lower is better) Translates to: GRLLSWLGHPRPPCR*GAEHTDAQAAAAGT Trigger: TGTGCCAGCAGCAGCGGCCTGTGCGTCTGTGTGCTCCGCACCGCACCTGCAGGGAGGCCTTGGATGTCCTAGCCAAGACAGTAGCCTTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CCA 90 bp | GGTAGAGGCCATGAGGAGGATTCGGGCCAGGCGGCCTTGGCTGGCTaGGTACCAGGGCTCCAAGACTTCACACAGTGCCCAGTGAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: GRGHEEDSGQAALAG*VPGLQDFTQCPVSL Trigger: GAGGCTCACTGGGCACTGTGTGAAGTCTTGGAGCCCTGGTACCCAGCCAGCCAAGGCCGCCTGGCCCGAATCCTCCTCATGGCCTCTACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CAA 90 bp | CAGGAGGGATTCTGGCTTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGCTCGGGCCAGGCGGCCTaGGCTGGCTGGGTACCAGGG | + |
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Preference number: 5 (lower is better) Translates to: QEGFWLESTASCSHPYPGSGQAA*AGWVPG Trigger: CCCTGGTACCCAGCCAGCCAAGGCCGCCTGGCCCGA...GCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCCAGAATCCCTCCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS TCA 90 bp | TGGCTGGCTGGGTACCAGGGCTCCAAGACTTCACACAGTGCCCAGTaGGCCTCCTGTTGCAGGTGTGCGATGTGGCAGGAGGCACGGAGG | + |
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Preference number: 5 (lower is better) Translates to: WLAGYQGSKTSHSAQ*ASCCRCAMWQEARR Trigger: CCTCCGTGCCTCCTGCCACATCGCACACCTGCAACAGGAGGCTCACTGGGCACTGTGTGAAGTCTTGGAGCCCTGGTACCCAGCCAGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS TCA 90 bp | GCCGCTGATCCTCATGGGGCAGGTGGCAGAAGGACGGCAGGTTCCTaGGGAAGGCTACTGTCTTGGCTAGGACATCCAAGGCCTCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: AADPHGAGGRRTAGS*GRLLSWLGHPRPPC Trigger: GCAGGGAGGCCTTGGATGTCCTAGCCAAGACAGTAGCCTTCCTCAGGAACCTGCCGTCCTTCTGCCACCTGCCCCATGAGGATCAGCGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CCA 90 bp | TTCTTGAGGGTAGAGGCCATGAGGAGGATTCGGGCCAGGCGGCCTTaGCTGGCTGGGTACCAGGGCTCCAAGACTTCACACAGTGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: FLRVEAMRRIRARRP*LAGYQGSKTSHSAQ Trigger: CTGGGCACTGTGTGAAGTCTTGGAGCCCTGGTACCCAGCCAGCCAAGGCCGCCTGGCCCGAATCCTCCTCATGGCCTCTACCCTCAAGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS TCA 90 bp | GGTGTGCGATGTGGCAGGAGGCACGGAGGCCTGGCACATCTGGGTTaGAGAGGATCGTGCCCTTCAGGTACGCATACTCCTTGGGACCCA | + |
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Preference number: 5 (lower is better) Translates to: GVRCGRRHGGLAHLG*RGSCPSGTHTPWDP Trigger: TGGGTCCCAAGGAGTATGCGTACCTGAAGGGCACGATCCTCTTCAACCCAGATGTGCCAGGCCTCCGTGCCTCCTGCCACATCGCACACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS GCA 90 bp | CTCCAAGACTTCACACAGTGCCCAGTGAGCCTCCTGTTGCAGGTGTaGGATGTGGCAGGAGGCACGGAGGCCTGGCACATCTGGGTTGAA | + |
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Preference number: 5 (lower is better) Translates to: LQDFTQCPVSLLLQV*DVAGGTEAWHIWVE Trigger: TTCAACCCAGATGTGCCAGGCCTCCGTGCCTCCTGCCACATCGCACACCTGCAACAGGAGGCTCACTGGGCACTGTGTGAAGTCTTGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CCA 90 bp | AGCCTCCTGTTGCAGGTGTGCGATGTGGCAGGAGGCACGGAGGCCTaGCACATCTGGGTTGAAGAGGATCGTGCCCTTCAGGTACGCATA | + |
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Preference number: 5 (lower is better) Translates to: SLLLQVCDVAGGTEA*HIWVEEDRALQVRI Trigger: TATGCGTACCTGAAGGGCACGATCCTCTTCAACCCAGATGTGCCAGGCCTCCGTGCCTCCTGCCACATCGCACACCTGCAACAGGAGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CAA 90 bp | CAGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGCCTGGCACATCTGGGTaGAAGAGGATCGTGCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: QLPAPIPTQAGKDILAWRPGTSG*KRIVPF Trigger: GAAGGGCACGATCCTCTTCAACCCAGATGTGCCAGG...CCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTCCAGTGAGCCTCCTGTaGCAGGTGTGCGATGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: SFLLPSLPRQGKTFWPGGPVSLL*QVCDVA Trigger: TGCCACATCGCACACCTGCAACAGGAGGCTCACTGG...ACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CCA 90 bp | GTCTCCCATGATAGGGCGGAAGAAGAGATCTACCAGAAGGGTGCCTaGAATGTTCTTGAGGGTAGAGGCCATGAGGAGGATTCGGGCCAG | + |
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Preference number: 5 (lower is better) Translates to: VSHDRAEEEIYQKGA*NVLEGRGHEEDSGQ Trigger: CTGGCCCGAATCCTCCTCATGGCCTCTACCCTCAAGAACATTCCAGGCACCCTTCTGGTAGATCTCTTCTTCCGCCCTATCATGGGAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CAA 90 bp | CCATCCCTACCCAGGCAGGGAAAGACATTTTGGCCTGGAGGTTTGGGGAGTCATAGGAAGGCTACTGTCTaGGCTAGGACATCCAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: PSLPRQGKTFWPGGLGSHRKATV*ARTSKA Trigger: GGCCTTGGATGTCCTAGCCAAGACAGTAGCCTTCCT...ATGACTCCCCAAACCTCCAGGCCAAAATGTCTTTCCCTGCCTGGGTAGGGATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS-3UTR CAA 90 bp | GGCTTGAAAGTACAGCTTCCTGCTCCCATCCCTACCCAGGCAGGGAAAGACATTGTGCCTGGAATGTTCTaGAGGGTAGAGGCCATGAGG | + |
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Preference number: 5 (lower is better) Translates to: GLKVQLPAPIPTQAGKDIVPGMF*RVEAMR Trigger: CCTCATGGCCTCTACCCTCAAGAACATTCCAGGCAC...AATGTCTTTCCCTGCCTGGGTAGGGATGGGAGCAGGAAGCTGTACTTTCAAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS GCA 72 bp | TTGGCTAGGACATCCAAGGCCTCCCTGCAGGTGCGGTaGGGAGCACACAGACGCACAGGCCGCTGCTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LARTSKASLQVR*GAHRRTGRCCW Trigger: CCAGCAGCAGCGGCCTGTGCGTCTGTGTGCTCCGCACCGCACCTGCAGGGAGGCCTTGGATGTCCTAGCCAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS GCA 72 bp | CTGTCTTGGCTAGGACATCCAAGGCCTCCCTGCAGGTaGGGTGCGGAGCACACAGACGCACAGGCCGCTGCT | + |
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Preference number: 6 (lower is better) Translates to: LSWLGHPRPPCR*GAEHTDAQAAA Trigger: AGCAGCGGCCTGTGCGTCTGTGTGCTCCGCACCGCACCTGCAGGGAGGCCTTGGATGTCCTAGCCAAGACAG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CCA 72 bp | ACTGCAGCCAGTGAGGGTTGTGGCCGGTCTGATGGCTaGGCACCCTGGGTACCGCTGCTGGCTTCCTCTAGC | + |
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Preference number: 6 (lower is better) Translates to: TAASEGCGRSDG*APWVPLLASSS Trigger: GCTAGAGGAAGCCAGCAGCGGTACCCAGGGTGCCCAGCCATCAGACCGGCCACAACCCTCACTGGCTGCAGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 72 bp | GGTAGAGGCCATGAGGAGGATTCGGGCCAGGCGGCCTaGGCTGGCTGGGTACCAGGGCTCCAAGACTTCACA | + |
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Preference number: 6 (lower is better) Translates to: GRGHEEDSGQAA*AGWVPGLQDFT Trigger: TGTGAAGTCTTGGAGCCCTGGTACCCAGCCAGCCAAGGCCGCCTGGCCCGAATCCTCCTCATGGCCTCTACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 90 bp | GGCAGGTGGCAGAAGGACGGCAGGTTCCTGAGGAAGGCTACTGTCTaGGCTAGGACATCCAAGGCCTCCCTGCAGGTGCGGTGCGGAGCA | + |
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Preference number: 6 (lower is better) Translates to: GRWQKDGRFLRKATV*ARTSKASLQVRCGA Trigger: TGCTCCGCACCGCACCTGCAGGGAGGCCTTGGATGTCCTAGCCAAGACAGTAGCCTTCCTCAGGAACCTGCCGTCCTTCTGCCACCTGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 90 bp | GTTCTTGAGGGTAGAGGCCATGAGGAGGATTCGGGCCAGGCGGCCTaGGCTGGCTGGGTACCAGGGCTCCAAGACTTCACACAGTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: VLEGRGHEEDSGQAA*AGWVPGLQDFTQCP Trigger: TGGGCACTGTGTGAAGTCTTGGAGCCCTGGTACCCAGCCAGCCAAGGCCGCCTGGCCCGAATCCTCCTCATGGCCTCTACCCTCAAGAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS GCA 72 bp | TGCAACGGGCCTGGTCCTGGGGCTGGGGCTCAGAAGTaGATACAGAATAGTCGGACGACCTGCAGAGCCCTG | + |
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Preference number: 6 (lower is better) Translates to: CNGPGPGAGAQK*IQNSRTTCRAL Trigger: CAGGGCTCTGCAGGTCGTCCGACTATTCTGTATGCACTTCTGAGCCCCAGCCCCAGGACCAGGCCCGTTGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 90 bp | AGGTGTGCGATGTGGCAGGAGGCACGGAGGCCTGGCACATCTGGGTaGAAGAGGATCGTGCCCTTCAGGTACGCATACTCCTTGGGACCC | + |
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Preference number: 6 (lower is better) Translates to: RCAMWQEARRPGTSG*KRIVPFRYAYSLGP Trigger: GGGTCCCAAGGAGTATGCGTACCTGAAGGGCACGATCCTCTTCAACCCAGATGTGCCAGGCCTCCGTGCCTCCTGCCACATCGCACACCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CCA 72 bp | TTGCAGGTGTGCGATGTGGCAGGAGGCACGGAGGCCTaGCACATCTGGGTTGAAGAGGATCGTGCCCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: LQVCDVAGGTEA*HIWVEEDRALQ Trigger: CTGAAGGGCACGATCCTCTTCAACCCAGATGTGCCAGGCCTCCGTGCCTCCTGCCACATCGCACACCTGCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 72 bp | CAGAAGGACGGCAGGTTCCTGAGGAAGGCTACTGTCTaGGCTAGGACATCCAAGGCCTCCCTGCAGGTGCGG | + |
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Preference number: 6 (lower is better) Translates to: QKDGRFLRKATV*ARTSKASLQVR Trigger: CCGCACCTGCAGGGAGGCCTTGGATGTCCTAGCCAAGACAGTAGCCTTCCTCAGGAACCTGCCGTCCTTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS TCA 72 bp | CCTCATGGGGCAGGTGGCAGAAGGACGGCAGGTTCCTaGGGAAGGCTACTGTCTTGGCTAGGACATCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: PHGAGGRRTAGS*GRLLSWLGHPR Trigger: CCTTGGATGTCCTAGCCAAGACAGTAGCCTTCCTCAGGAACCTGCCGTCCTTCTGCCACCTGCCCCATGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS TCA 72 bp | TGTGGCAGGAGGCACGGAGGCCTGGCACATCTGGGTTaGAGAGGATCGTGCCCTTCAGGTACGCATACTCCT | + |
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Preference number: 6 (lower is better) Translates to: CGRRHGGLAHLG*RGSCPSGTHTP Trigger: AGGAGTATGCGTACCTGAAGGGCACGATCCTCTTCAACCCAGATGTGCCAGGCCTCCGTGCCTCCTGCCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 90 bp | ACATCTGGGTTGAAGAGGATCGTGCCCTTCAGGTACGCATACTCCTaGGGACCCAGCTCAAGGCTCCAGAAAGACTCCAGGCAGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: TSGLKRIVPFRYAYS*GPSSRLQKDSRQRC Trigger: GCAGCGCTGCCTGGAGTCTTTCTGGAGCCTTGAGCTGGGTCCCAAGGAGTATGCGTACCTGAAGGGCACGATCCTCTTCAACCCAGATGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 90 bp | ATAGGGCGGAAGAAGAGATCTACCAGAAGGGTGCCTGGAATGTTCTaGAGGGTAGAGGCCATGAGGAGGATTCGGGCCAGGCGGCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: IGRKKRSTRRVPGMF*RVEAMRRIRARRPW Trigger: CCAAGGCCGCCTGGCCCGAATCCTCCTCATGGCCTCTACCCTCAAGAACATTCCAGGCACCCTTCTGGTAGATCTCTTCTTCCGCCCTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CAA 72 bp | TTGAAGAGGATCGTGCCCTTCAGGTACGCATACTCCTaGGGACCCAGCTCAAGGCTCCAGAAAGACTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LKRIVPFRYAYS*GPSSRLQKDSR Trigger: CCTGGAGTCTTTCTGGAGCCTTGAGCTGGGTCCCAAGGAGTATGCGTACCTGAAGGGCACGATCCTCTTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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| CDS CCA 72 bp | GATAGGGCGGAAGAAGAGATCTACCAGAAGGGTGCCTaGAATGTTCTTGAGGGTAGAGGCCATGAGGAGGAT | + |
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Preference number: 6 (lower is better) Translates to: DRAEEEIYQKGA*NVLEGRGHEED Trigger: ATCCTCCTCATGGCCTCTACCCTCAAGAACATTCCAGGCACCCTTCTGGTAGATCTCTTCTTCCGCCCTATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042706.3 |
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