RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NR0B1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025056

Ensembl transcript IDs: ENSMUST00000026036.5

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp CAAGAAAGTTTGGTTTCACAAATTTTAGCACTCTTCTaGCTACAGCTACGACCGCTTTCTCCATCTATAGTA +
Preference number: 3 (lower is better)
Translates to: QESLVSQILALF*LQLRPLSPSIV
Trigger: TACTATAGATGGAGAAAGCGGTCGTAGCTGTAGGCAGAAGAGTGCTAAAATTTGTGAAACCAAACTTTCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp AATACAAGAAAGTTTGGTTTCACAAATTTTAGCACTCTTCTGCCTACAGCTACGCCGGCAGCCCCTCTCTaGCCACCAGGGGCTCTGCGC +
Preference number: 4 (lower is better)
Translates to: NTRKFGFTNFSTLLPTATPAAPL*PPGALR
Trigger: GCGCAGAGCCCCTGGTGGGCAGAGAGGGGCTGCCGG...CGTAGCTGTAGGCAGAAGAGTGCTAAAATTTGTGAAACCAAACTTTCTTGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp CAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTCAGGCCAGCGGACGCTaGCTCGCACACCACCTGTGG +
Preference number: 4 (lower is better)
Translates to: QMLSFTRSQYGAEGFLHCQASGR*LAHHLW
Trigger: CCACAGGTGGTGTGCGAGGCAGCGTCCGCTGGCCTG...ACAATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CCA 90 bp TGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGCTCTGCAGCCCCTCTaGGCCACCCACACTCTGGGT +
Preference number: 4 (lower is better)
Translates to: CKCFPSQEASMEQRDFYIALQPL*ATHTLG
Trigger: ACCCAGAGTGTGGGTGGCCCAGAGGGGCTGCAGAGC...AATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CCA 90 bp GTGATTTGTTTGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGAGGTACAGGAACGCCATaGCCTGTGTGCTCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: VICLQMLSFTRSQYGAEGGTGTP*PVCSAA
Trigger: GGCTGCAGAGCACACAGGCCATGGCGTTCCTGTACC...TCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCAAACAAATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CCA 90 bp TGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGGCTGCTCTGTGGCCTaGGGCTCTGCAGGCTCTGGA +
Preference number: 4 (lower is better)
Translates to: CKCFPSQEASMEQRDFYIGCSVA*GSAGSG
Trigger: TCCAGAGCCTGCAGAGCCCCAGGCCACAGAGCAGCC...AATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR TCA 90 bp TTGTTTGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTCCACCCTGGCGCGGGTaGTTCTCCCCACAAAAGCAG +
Preference number: 4 (lower is better)
Translates to: LFANAFLHKKPVWSRGIFPPWRG*FSPQKQ
Trigger: CTGCTTTTGTGGGGAGAATCACCCGCGCCAGGGTGG...AAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCAAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp CAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTTGTGGCCTGGGGCTCTaGAGGCTCTGGACCTTCGGT +
Preference number: 4 (lower is better)
Translates to: QMLSFTRSQYGAEGFLHCCGLGL*RLWTFG
Trigger: ACCGAAGGTCCAGAGCCTGCAGAGCCCCAGGCCACA...ACAATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CCA 90 bp AATACAAGAAAGTTTGGTTTCACAAATTTTAGCACTCTTCTGCCTACAGCTACGCTGGACCGCAGCAGCTaGGAGCAAGTGCCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: NTRKFGFTNFSTLLPTATLDRSS*EQVPSL
Trigger: GAGGCTGGGCACTTGCTCCCAGCTGCTGCGGTCCAG...CGTAGCTGTAGGCAGAAGAGTGCTAAAATTTGTGAAACCAAACTTTCTTGTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CCA 90 bp CAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTCAGGCCAGGCAGGTCTaGGTTAAAGAGCACGGTCCC +
Preference number: 4 (lower is better)
Translates to: QMLSFTRSQYGAEGFLHCQARQV*VKEHGP
Trigger: GGGACCGTGCTCTTTAACCCAGACCTGCCTGGCCTG...ACAATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR TCA 90 bp CAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTGACACGTGCGTTTGCTaGGCGCTAGTGAGCAAGCTG +
Preference number: 4 (lower is better)
Translates to: QMLSFTRSQYGAEGFLHCDTCVC*ALVSKL
Trigger: CAGCTTGCTCACTAGCGCTCAGCAAACGCACGTGTC...ACAATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR TCA 90 bp GTGATTTGTTTGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGAAGCAGGGCAAGTACTTaGCAAAGCGCAGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: VICLQMLSFTRSQYGAEGSRAST*QSAGSS
Trigger: TGAAGACCCTGCGCTTTGTCAAGTACTTGCCCTGCT...TCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCAAACAAATCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR TCA 90 bp AATACAAGAAAGTTTGGTTTCACAAATTTTAGCACTCTTCTGCCTACAGCTACGGGGCCAACTCAAGCATaGGTAGGGGCGCCCAACAGC +
Preference number: 4 (lower is better)
Translates to: NTRKFGFTNFSTLLPTATGPTQA*VGAPNS
Trigger: GCTGTTGGGCGCCCCTACTCATGCTTGAGTTGGCCC...CGTAGCTGTAGGCAGAAGAGTGCTAAAATTTGTGAAACCAAACTTTCTTGTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp CAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTGTAGATTGTAGAGGATaGTGCCCTGCCACGGGTGGT +
Preference number: 4 (lower is better)
Translates to: QMLSFTRSQYGAEGFLHCVDCRG*CPATGG
Trigger: ACCACCCGTGGCAGGGCAGCATCCTCTACAATCTAC...ACAATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp GAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTAACTAAAGTATTTCTTCAAGACACCATCTGTGGCTaGTCTGTGGCCTGGGGCTCT +
Preference number: 4 (lower is better)
Translates to: EASMEQRDFYIVTKVFLQDTICG*SVAWGS
Trigger: AGAGCCCCAGGCCACAGAGCAGCCACAGATGGTGTC...TTGAAGAAATACTTTAGTTACAATGTAAAAATCCCTCTGCTCCATACTGGCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR TCA 90 bp TGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTTCAGTTCAGCGGATCTaGTCTGGTACTCTCTCTGCA +
Preference number: 4 (lower is better)
Translates to: CKCFPSQEASMEQRDFYISVQRI*SGTLSA
Trigger: TGCAGAGAGAGTACCAGATCAGATCCGCTGAACTGA...AATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp AATACAAGAAAGTTTGGTTTCACAAATTTTAGCACTCTTCTGCCTACAGCTACGATGTATTTCACGCACTaGAGGCCAGGCAGGTCTGGG +
Preference number: 4 (lower is better)
Translates to: NTRKFGFTNFSTLLPTATMYFTH*RPGRSG
Trigger: CCCAGACCTGCCTGGCCTGCAGTGCGTGAAATACAT...CGTAGCTGTAGGCAGAAGAGTGCTAAAATTTGTGAAACCAAACTTTCTTGTATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp GAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTAACTAAAGTATTTCTTCAATATAAGATGCTGCCCTaGCTCGGGTGCTCTTCTCCG +
Preference number: 4 (lower is better)
Translates to: EASMEQRDFYIVTKVFLQYKMLP*LGCSSP
Trigger: CGGAGAAGAGCACCCGAGGCAGGGCAGCATCTTATA...TTGAAGAAATACTTTAGTTACAATGTAAAAATCCCTCTGCTCCATACTGGCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR GCA 90 bp CAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTATCATCCATGCTGACTaGACCAATGATGGGCCTGAA +
Preference number: 4 (lower is better)
Translates to: QMLSFTRSQYGAEGFLHCIIHAD*TNDGPE
Trigger: TTCAGGCCCATCATTGGTGCAGTCAGCATGGATGAT...ACAATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CCA 90 bp GAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTAACTAAAGTATTTCTTCAATCTAGGGGCAGGATCTaGAAGCAGGGCAAGTACTTG +
Preference number: 4 (lower is better)
Translates to: EASMEQRDFYIVTKVFLQSRGRI*KQGKYL
Trigger: CAAGTACTTGCCCTGCTTCCAGATCCTGCCCCTAGA...TTGAAGAAATACTTTAGTTACAATGTAAAAATCCCTCTGCTCCATACTGGCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp TGCACACCAGGTGAGGCGTCCCACCAGGGAGCCCTCGGCTGCTCTTaGGGGGTCGCTGGTGTTTGGTCTGCGCTCACGGGCGTGCCAGAG +
Preference number: 5 (lower is better)
Translates to: CTPGEASHQGALGCS*GVAGVWSALTGVPE
Trigger: CTCTGGCACGCCCGTGAGCGCAGACCAAACACCAGCGACCCCGCAAGAGCAGCCGAGGGCTCCCTGGTGGGACGCCTCACCTGGTGTGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 90 bp TCCCACCAGGGAGCCCTCGGCTGCTCTTGCGGGGTCGCTGGTGTTTaGTCTGCGCTCACGGGCGTGCCAGAGGCAACGCTGATCTGCTGG +
Preference number: 5 (lower is better)
Translates to: SHQGALGCSCGVAGV*SALTGVPEATLICW
Trigger: CCAGCAGATCAGCGTTGCCTCTGGCACGCCCGTGAGCGCAGACCAAACACCAGCGACCCCGCAAGAGCAGCCGAGGGCTCCCTGGTGGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 90 bp AAGTGCCCAGCCTCCGCGGACACCATCTGTGGCTGCTCTGTGGCCTaGGGCTCTGCAGGCTCTGGACCTTCGGTCTCCTGCCGCCTGGTG +
Preference number: 5 (lower is better)
Translates to: KCPASADTICGCSVA*GSAGSGPSVSCRLV
Trigger: CACCAGGCGGCAGGAGACCGAAGGTCCAGAGCCTGCAGAGCCCCAGGCCACAGAGCAGCCACAGATGGTGTCCGCGGAGGCTGGGCACTT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 90 bp CGCAGCAGCTGGGAGCAAGTGCCCAGCCTCCGCGGACACCATCTGTaGCTGCTCTGTGGCCTGGGGCTCTGCAGGCTCTGGACCTTCGGT +
Preference number: 5 (lower is better)
Translates to: RSSWEQVPSLRGHHL*LLCGLGLCRLWTFG
Trigger: ACCGAAGGTCCAGAGCCTGCAGAGCCCCAGGCCACAGAGCAGCCACAGATGGTGTCCGCGGAGGCTGGGCACTTGCTCCCAGCTGCTGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 90 bp CACCACCTGTGGATCCTTGAGTGTGATCAGACGCTGCACACCAGGTaGGGCGTCCCACCAGGGAGCCCTCGGCTGCTCTTGCGGGGTCGC +
Preference number: 5 (lower is better)
Translates to: HHLWILECDQTLHTR*GVPPGSPRLLLRGR
Trigger: GCGACCCCGCAAGAGCAGCCGAGGGCTCCCTGGTGGGACGCCTCACCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 90 bp GGGGCTGCTCTTCACCGCACACATAGCTGCGGTACAGGAACGCCATaGCCTGTGTGCTCTGCAGCCCCTCTGGGCCACCCACACTCTGGG +
Preference number: 5 (lower is better)
Translates to: GAALHRTHSCGTGTP*PVCSAAPLGHPHSG
Trigger: CCCAGAGTGTGGGTGGCCCAGAGGGGCTGCAGAGCACACAGGCCATGGCGTTCCTGTACCGCAGCTATGTGTGCGGTGAAGAGCAGCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp GCTGCCTCGCACACCACCTGTGGATCCTTGAGTGTGATCAGACGCTaGACACCAGGTGAGGCGTCCCACCAGGGAGCCCTCGGCTGCTCT +
Preference number: 5 (lower is better)
Translates to: AASHTTCGSLSVIRR*TPGEASHQGALGCS
Trigger: AGAGCAGCCGAGGGCTCCCTGGTGGGACGCCTCACCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTGCGAGGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 90 bp TCGCTGGTGTTTGGTCTGCGCTCACGGGCGTGCCAGAGGCAACGCTaGTCTGCTGGGGCTGCTCTTCACCGCACACATAGCTGCGGTACA +
Preference number: 5 (lower is better)
Translates to: SLVFGLRSRACQRQR*SAGAALHRTHSCGT
Trigger: TGTACCGCAGCTATGTGTGCGGTGAAGAGCAGCCCCAGCAGATCAGCGTTGCCTCTGGCACGCCCGTGAGCGCAGACCAAACACCAGCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp CACCCACACTCTGGGTACAGTAGGACAGCTGCCACCACTCGCCTCTaGGATGTGCCTCGGGTGCTTCCCGAGACACGTGCGTTTGCTGAG +
Preference number: 5 (lower is better)
Translates to: HPHSGYSRTAATTRL*DVPRVLPETRAFAE
Trigger: CTCAGCAAACGCACGTGTCTCGGGAAGCACCCGAGGCACATCGCAGAGGCGAGTGGTGGCAGCTGTCCTACTGTACCCAGAGTGTGGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 90 bp CCAGCTGCTGATCTAGGGGCAGGATCTGGAAGCAGGGCAAGTACTTaGCAAAGCGCAGGGTCTTCAACAGGCCAGCGGACGCTGCCTCGC +
Preference number: 5 (lower is better)
Translates to: PAADLGAGSGSRAST*QSAGSSTGQRTLPR
Trigger: GCGAGGCAGCGTCCGCTGGCCTGTTGAAGACCCTGCGCTTTGTCAAGTACTTGCCCTGCTTCCAGATCCTGCCCCTAGATCAGCAGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp ACAGTAGGACAGCTGCCACCACTCGCCTCTGCGATGTGCCTCGGGTaGTTCCCGAGACACGTGCGTTTGCTGAGCGCTAGTGAGCAAGCT +
Preference number: 5 (lower is better)
Translates to: TVGQLPPLASAMCLG*FPRHVRLLSASEQA
Trigger: AGCTTGCTCACTAGCGCTCAGCAAACGCACGTGTCTCGGGAAGCACCCGAGGCACATCGCAGAGGCGAGTGGTGGCAGCTGTCCTACTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp ACTCTGGGTACAGTAGGACAGCTGCCACCACTCGCCTCTGCGATGTaGCTCGGGTGCTTCCCGAGACACGTGCGTTTGCTGAGCGCTAGT +
Preference number: 5 (lower is better)
Translates to: TLGTVGQLPPLASAM*LGCFPRHVRLLSAS
Trigger: ACTAGCGCTCAGCAAACGCACGTGTCTCGGGAAGCACCCGAGGCACATCGCAGAGGCGAGTGGTGGCAGCTGTCCTACTGTACCCAGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp AAAAAGAAACTCTTGATGGCCTGGACCGCAGCAGCTGGGAGCAAGTaGCCAGCCTCCGCGGACACCATCTGTGGCTGCTCTGTGGCCTGG +
Preference number: 5 (lower is better)
Translates to: KKKLLMAWTAAAGSK*PASADTICGCSVAW
Trigger: CCAGGCCACAGAGCAGCCACAGATGGTGTCCGCGGAGGCTGGGCACTTGCTCCCAGCTGCTGCGGTCCAGGCCATCAAGAGTTTCTTTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp GGCTCTGGACCTTCGGTCTCCTGCCGCCTGGTGGTAAGCATTTCCTaGGTCGTGTTGGTCTCCGGGATCTCCATCATCTCGAAGTGCAGG +
Preference number: 5 (lower is better)
Translates to: GSGPSVSCRLVVSIS*VVLVSGISIISKCR
Trigger: CCTGCACTTCGAGATGATGGAGATCCCGGAGACCAACACGACGCAGGAAATGCTTACCACCAGGCGGCAGGAGACCGAAGGTCCAGAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 90 bp AGCATGAGTAGGGGCGCCCAACAGCTCCGCACCAGCACCAGCTGCTaGTCTAGGGGCAGGATCTGGAAGCAGGGCAAGTACTTGACAAAG +
Preference number: 5 (lower is better)
Translates to: SMSRGAQQLRTSTSC*SRGRIWKQGKYLTK
Trigger: CTTTGTCAAGTACTTGCCCTGCTTCCAGATCCTGCCCCTAGATCAGCAGCTGGTGCTGGTGCGGAGCTGTTGGGCGCCCCTACTCATGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 90 bp TCTCCATCATCTCGAAGTGCAGGTGATCTTGGGCCAACTCAAGCATaGGTAGGGGCGCCCAACAGCTCCGCACCAGCACCAGCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: SPSSRSAGDLGPTQA*VGAPNSSAPAPAAD
Trigger: ATCAGCAGCTGGTGCTGGTGCGGAGCTGTTGGGCGCCCCTACTCATGCTTGAGTTGGCCCAAGATCACCTGCACTTCGAGATGATGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 90 bp TGCGTCGTGTTGGTCTCCGGGATCTCCATCATCTCGAAGTGCAGGTaGTCTTGGGCCAACTCAAGCATGAGTAGGGGCGCCCAACAGCTC +
Preference number: 5 (lower is better)
Translates to: CVVLVSGISIISKCR*SWANSSMSRGAQQL
Trigger: GAGCTGTTGGGCGCCCCTACTCATGCTTGAGTTGGCCCAAGATCACCTGCACTTCGAGATGATGGAGATCCCGGAGACCAACACGACGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 90 bp CAAGTACTTGACAAAGCGCAGGGTCTTCAACAGGCCAGCGGACGCTaGCTCGCACACCACCTGTGGATCCTTGAGTGTGATCAGACGCTG +
Preference number: 5 (lower is better)
Translates to: QVLDKAQGLQQASGR*LAHHLWILECDQTL
Trigger: CAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTGCGAGGCAGCGTCCGCTGGCCTGTTGAAGACCCTGCGCTTTGTCAAGTACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 90 bp TCAATGTTCAGACTCCAGCACTTGAAAAAGAAACTCTTGATGGCCTaGACCGCAGCAGCTGGGAGCAAGTGCCCAGCCTCCGCGGACACC +
Preference number: 5 (lower is better)
Translates to: SMFRLQHLKKKLLMA*TAAAGSKCPASADT
Trigger: GGTGTCCGCGGAGGCTGGGCACTTGCTCCCAGCTGCTGCGGTCCAGGCCATCAAGAGTTTCTTTTTCAAGTGCTGGAGTCTGAACATTGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 90 bp TGCATCATCCGGATGTGCTCAGTAAGGATCTGCTGGGTTCTCCACTaGAGACCCTCAATGTATTTCACGCACTGCAGGCCAGGCAGGTCT +
Preference number: 5 (lower is better)
Translates to: CIIRMCSVRICWVLH*RPSMYFTHCRPGRS
Trigger: AGACCTGCCTGGCCTGCAGTGCGTGAAATACATTGAGGGTCTTCAGTGGAGAACCCAGCAGATCCTTACTGAGCACATCCGGATGATGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 90 bp AATCTCAGCAGGAAAAGGGCACTGTTCAGTTCAGCGGATCTGATCTaGTACTCTCTCTGCATCATCCGGATGTGCTCAGTAAGGATCTGC +
Preference number: 5 (lower is better)
Translates to: NLSRKRALFSSADLI*YSLCIIRMCSVRIC
Trigger: GCAGATCCTTACTGAGCACATCCGGATGATGCAGAGAGAGTACCAGATCAGATCCGCTGAACTGAACAGTGCCCTTTTCCTGCTGAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CAA 90 bp TGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTCCGAGACACGTGCGTTaGCTGAGCGCTAGTGAGCAA +
Preference number: 5 (lower is better)
Translates to: CKCFPSQEASMEQRDFYIPRHVR*LSASEQ
Trigger: TTGCTCACTAGCGCTCAGCAAACGCACGTGTCTCGG...AATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CAA 90 bp GTGATTTGTTTGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGAAAGCAGGGCAAGTACTaGACAAAGCGCAGGGTCTTC +
Preference number: 5 (lower is better)
Translates to: VICLQMLSFTRSQYGAEGKQGKY*TKRRVF
Trigger: GAAGACCCTGCGCTTTGTCAAGTACTTGCCCTGCTT...TCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCAAACAAATCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CAA 90 bp TTGTTTGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACCACCTGTGGATCCTaGAGTGTGATCAGACGCTGC +
Preference number: 5 (lower is better)
Translates to: LFANAFLHKKPVWSRGIFTTCGS*SVIRRC
Trigger: GCAGCGTCTGATCACACTCAAGGATCCACAGGTGGT...AAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCAAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CAA 90 bp CAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTACATTGTTTGAAAAAGAAACTCTaGATGGCCTGGACCGCAGCA +
Preference number: 5 (lower is better)
Translates to: QMLSFTRSQYGAEGFLHCLKKKL*MAWTAA
Trigger: TGCTGCGGTCCAGGCCATCAAGAGTTTCTTTTTCAA...ACAATGTAAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CAA 90 bp TTGTTTGCAAATGCTTTCCTTCACAAGAAGCCAGTATGGAGCAGAGGGATTTTTTTCAGACTCCAGCACTaGAAAAAGAAACTCTTGATG +
Preference number: 5 (lower is better)
Translates to: LFANAFLHKKPVWSRGIFFRLQH*KKKLLM
Trigger: CATCAAGAGTTTCTTTTTCAAGTGCTGGAGTCTGAA...AAAAATCCCTCTGCTCCATACTGGCTTCTTGTGAAGGAAAGCATTTGCAAACAA
40% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS-3UTR CAA 90 bp AATACAAGAAAGTTTGGTTTCACAAATTTTAGCACTCTTCTGCCTACAGCTACGGTGACGACATCGCTATaGATGAATCTCAGCAGGAAA +
Preference number: 5 (lower is better)
Translates to: NTRKFGFTNFSTLLPTATVTTSL*MNLSRK
Trigger: TTTCCTGCTGAGATTCATCAATAGCGATGTCGTCAC...CGTAGCTGTAGGCAGAAGAGTGCTAAAATTTGTGAAACCAAACTTTCTTGTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp GGTGAGGCGTCCCACCAGGGAGCCCTCGGCTGCTCTTaGGGGGTCGCTGGTGTTTGGTCTGCGCTCACGGGC +
Preference number: 6 (lower is better)
Translates to: GEASHQGALGCS*GVAGVWSALTG
Trigger: GCCCGTGAGCGCAGACCAAACACCAGCGACCCCGCAAGAGCAGCCGAGGGCTCCCTGGTGGGACGCCTCACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 72 bp CCCCAGCAAGGTGCTCCGAATCGTGCCCTCGGCGCCTaGGTCGCCACGCTTGGCTGCCTGGCGTTGGTGAGC +
Preference number: 6 (lower is better)
Translates to: PQQGAPNRALGA*VATLGCLALVS
Trigger: GCTCACCAACGCCAGGCAGCCAAGCGTGGCGACCCAGGCGCCGAGGGCACGATTCGGAGCACCTTGCTGGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 72 bp CCACCAGGGAGCCCTCGGCTGCTCTTGCGGGGTCGCTaGTGTTTGGTCTGCGCTCACGGGCGTGCCAGAGGC +
Preference number: 6 (lower is better)
Translates to: PPGSPRLLLRGR*CLVCAHGRARG
Trigger: GCCTCTGGCACGCCCGTGAGCGCAGACCAAACACCAGCGACCCCGCAAGAGCAGCCGAGGGCTCCCTGGTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CAA 90 bp GTCCCACCAGGGAGCCCTCGGCTGCTCTTGCGGGGTCGCTGGTGTTaGGTCTGCGCTCACGGGCGTGCCAGAGGCAACGCTGATCTGCTG +
Preference number: 6 (lower is better)
Translates to: VPPGSPRLLLRGRWC*VCAHGRARGNADLL
Trigger: CAGCAGATCAGCGTTGCCTCTGGCACGCCCGTGAGCGCAGACCAAACACCAGCGACCCCGCAAGAGCAGCCGAGGGCTCCCTGGTGGGAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp CTCTTGATGGCCTGGACCGCAGCAGCTGGGAGCAAGTaGCCAGCCTCCGCGGACACCATCTGTGGCTGCTCT +
Preference number: 6 (lower is better)
Translates to: LLMAWTAAAGSK*PASADTICGCS
Trigger: AGAGCAGCCACAGATGGTGTCCGCGGAGGCTGGGCACTTGCTCCCAGCTGCTGCGGTCCAGGCCATCAAGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp CAGCTGCCACCACTCGCCTCTGCGATGTGCCTCGGGTaGTTCCCGAGACACGTGCGTTTGCTGAGCGCTAGT +
Preference number: 6 (lower is better)
Translates to: QLPPLASAMCLG*FPRHVRLLSAS
Trigger: ACTAGCGCTCAGCAAACGCACGTGTCTCGGGAAGCACCCGAGGCACATCGCAGAGGCGAGTGGTGGCAGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp GCCTGGGGCTCTGCAGGCTCTGGACCTTCGGTCTCCTaGCGCCTGGTGGTAAGCATTTCCTGCGTCGTGTTG +
Preference number: 6 (lower is better)
Translates to: AWGSAGSGPSVS*RLVVSISCVVL
Trigger: CAACACGACGCAGGAAATGCTTACCACCAGGCGGCAGGAGACCGAAGGTCCAGAGCCTGCAGAGCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CAA 72 bp CCAGCGGACGCTGCCTCGCACACCACCTGTGGATCCTaGAGTGTGATCAGACGCTGCACACCAGGTGAGGCG +
Preference number: 6 (lower is better)
Translates to: PADAASHTTCGS*SVIRRCTPGEA
Trigger: CGCCTCACCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTGCGAGGCAGCGTCCGCTGG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CAA 90 bp TTCAACAGGCCAGCGGACGCTGCCTCGCACACCACCTGTGGATCCTaGAGTGTGATCAGACGCTGCACACCAGGTGAGGCGTCCCACCAG +
Preference number: 6 (lower is better)
Translates to: FNRPADAASHTTCGS*SVIRRCTPGEASHQ
Trigger: CTGGTGGGACGCCTCACCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTGCGAGGCAGCGTCCGCTGGCCTGTTGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 72 bp TGGATCCTTGAGTGTGATCAGACGCTGCACACCAGGTaGGGCGTCCCACCAGGGAGCCCTCGGCTGCTCTTG +
Preference number: 6 (lower is better)
Translates to: WILECDQTLHTR*GVPPGSPRLLL
Trigger: CAAGAGCAGCCGAGGGCTCCCTGGTGGGACGCCTCACCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp ACAGTAGGACAGCTGCCACCACTCGCCTCTGCGATGTaGCTCGGGTGCTTCCCGAGACACGTGCGTTTGCTG +
Preference number: 6 (lower is better)
Translates to: TVGQLPPLASAM*LGCFPRHVRLL
Trigger: CAGCAAACGCACGTGTCTCGGGAAGCACCCGAGGCACATCGCAGAGGCGAGTGGTGGCAGCTGTCCTACTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp CACACCACCTGTGGATCCTTGAGTGTGATCAGACGCTaGACACCAGGTGAGGCGTCCCACCAGGGAGCCCTC +
Preference number: 6 (lower is better)
Translates to: HTTCGSLSVIRR*TPGEASHQGAL
Trigger: GAGGGCTCCCTGGTGGGACGCCTCACCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 72 bp CAACAGGCCAGCGGACGCTGCCTCGCACACCACCTGTaGATCCTTGAGTGTGATCAGACGCTGCACACCAGG +
Preference number: 6 (lower is better)
Translates to: QQASGRCLAHHL*ILECDQTLHTR
Trigger: CCTGGTGTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTGCGAGGCAGCGTCCGCTGGCCTGTTG
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 72 bp TCTCGAAGTGCAGGTGATCTTGGGCCAACTCAAGCATaGGTAGGGGCGCCCAACAGCTCCGCACCAGCACCA +
Preference number: 6 (lower is better)
Translates to: SRSAGDLGPTQA*VGAPNSSAPAP
Trigger: TGGTGCTGGTGCGGAGCTGTTGGGCGCCCCTACTCATGCTTGAGTTGGCCCAAGATCACCTGCACTTCGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp GACAAAGCGCAGGGTCTTCAACAGGCCAGCGGACGCTaGCTCGCACACCACCTGTGGATCCTTGAGTGTGAT +
Preference number: 6 (lower is better)
Translates to: DKAQGLQQASGR*LAHHLWILECD
Trigger: ATCACACTCAAGGATCCACAGGTGGTGTGCGAGGCAGCGTCCGCTGGCCTGTTGAAGACCCTGCGCTTTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS GCA 72 bp CCTTCGGTCTCCTGCCGCCTGGTGGTAAGCATTTCCTaGGTCGTGTTGGTCTCCGGGATCTCCATCATCTCG +
Preference number: 6 (lower is better)
Translates to: PSVSCRLVVSIS*VVLVSGISIIS
Trigger: CGAGATGATGGAGATCCCGGAGACCAACACGACGCAGGAAATGCTTACCACCAGGCGGCAGGAGACCGAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 72 bp GAAAAAGAAACTCTTGATGGCCTGGACCGCAGCAGCTaGGAGCAAGTGCCCAGCCTCCGCGGACACCATCTG +
Preference number: 6 (lower is better)
Translates to: EKETLDGLDRSS*EQVPSLRGHHL
Trigger: CAGATGGTGTCCGCGGAGGCTGGGCACTTGCTCCCAGCTGCTGCGGTCCAGGCCATCAAGAGTTTCTTTTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 72 bp TGTGCCTCGGGTGCTTCCCGAGACACGTGCGTTTGCTaGGCGCTAGTGAGCAAGCTGTATAAGATGCTGCCC +
Preference number: 6 (lower is better)
Translates to: CASGASRDTCVC*ALVSKLYKMLP
Trigger: GGGCAGCATCTTATACAGCTTGCTCACTAGCGCTCAGCAAACGCACGTGTCTCGGGAAGCACCCGAGGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CAA 72 bp TCCTGCCGCCTGGTGGTAAGCATTTCCTGCGTCGTGTaGGTCTCCGGGATCTCCATCATCTCGAAGTGCAGG +
Preference number: 6 (lower is better)
Translates to: SCRLVVSISCVV*VSGISIISKCR
Trigger: CCTGCACTTCGAGATGATGGAGATCCCGGAGACCAACACGACGCAGGAAATGCTTACCACCAGGCGGCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 72 bp TTGGTCTCCGGGATCTCCATCATCTCGAAGTGCAGGTaGTCTTGGGCCAACTCAAGCATGAGTAGGGGCGCC +
Preference number: 6 (lower is better)
Translates to: LVSGISIISKCR*SWANSSMSRGA
Trigger: GGCGCCCCTACTCATGCTTGAGTTGGCCCAAGATCACCTGCACTTCGAGATGATGGAGATCCCGGAGACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 72 bp AGACTCCAGCACTTGAAAAAGAAACTCTTGATGGCCTaGACCGCAGCAGCTGGGAGCAAGTGCCCAGCCTCC +
Preference number: 6 (lower is better)
Translates to: RLQHLKKKLLMA*TAAAGSKCPAS
Trigger: GGAGGCTGGGCACTTGCTCCCAGCTGCTGCGGTCCAGGCCATCAAGAGTTTCTTTTTCAAGTGCTGGAGTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS TCA 72 bp CGGATGTGCTCAGTAAGGATCTGCTGGGTTCTCCACTaGAGACCCTCAATGTATTTCACGCACTGCAGGCCA +
Preference number: 6 (lower is better)
Translates to: RMCSVRICWVLH*RPSMYFTHCRP
Trigger: TGGCCTGCAGTGCGTGAAATACATTGAGGGTCTTCAGTGGAGAACCCAGCAGATCCTTACTGAGCACATCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CCA 72 bp AGGAAAAGGGCACTGTTCAGTTCAGCGGATCTGATCTaGTACTCTCTCTGCATCATCCGGATGTGCTCAGTA +
Preference number: 6 (lower is better)
Translates to: RKRALFSSADLI*YSLCIIRMCSV
Trigger: TACTGAGCACATCCGGATGATGCAGAGAGAGTACCAGATCAGATCCGCTGAACTGAACAGTGCCCTTTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5
CDS CAA 72 bp ATGGGCCTGAAAAAGAGTTCAGTGACGACATCGCTATaGATGAATCTCAGCAGGAAAAGGGCACTGTTCAGT +
Preference number: 6 (lower is better)
Translates to: MGLKKSSVTTSL*MNLSRKRALFS
Trigger: ACTGAACAGTGCCCTTTTCCTGCTGAGATTCATCAATAGCGATGTCGTCACTGAACTCTTTTTCAGGCCCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026036.5