Pregenerated sensors for NQO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003849Ensembl transcript IDs: ENSMUST00000003947.9
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAAAAGAGCTGGAGAGCCAACCCCCTGGGCGCCATGTCAGTCACTaGACAGTAATTGAAACCAGGATGTATCATAAACAGGCTTTAGCT | + |
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Preference number: 1 (lower is better) Translates to: RKELESQPPGRHVSH*TVIETRMYHKQALA Trigger: AGCTAAAGCCTGTTTATGATACATCCTGGTTTCAATTACTGTGCAGTGACTGACATGGCGCCCAGGGGGTTGGCTCTCCAGCTCTTTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR GCA 90 bp | TGCATAAATGACCTAGAAGAGTATTTCCAGCTCGCTTCTGCACCTTaGCCTGAGGCTCCTAATCTGACTTCATTCATTTTGTTGTTATGG | + |
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Preference number: 1 (lower is better) Translates to: CINDLEEYFQLASAP*PEAPNLTSFILLLW Trigger: CCATAACAACAAAATGAATGAAGTCAGATTAGGAGCCTCAGGGCAAGGTGCAGAAGCGAGCTGGAAATACTCTTCTAGGTCATTTATGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR-3UTR CCA 90 bp | AATGAGACGGAGATCTGTTTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGTGGGAGAGCCAACCCCCTaGGCGCCATGTCAGTCACTG | + |
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Preference number: 2 (lower is better) Translates to: NETEICFKIPFPGPGCAVGEPTP*APCQSL Trigger: CAGTGACTGACATGGCGCCCAGGGGGTTGGCTCTCC...CACAGCACACCCAGGTCCTGGGAAAGGAATTTTAAAACAGATCTCCGTCTCATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR-3UTR GCA 90 bp | CCTAAACCACAGAGAGGTAATTATAGACAACGAATCTTGATGGAGGACTGGATGCTCGCTTCTGCACCTTaGCCTGAGGCTCCTAATCTG | + |
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Preference number: 2 (lower is better) Translates to: PKPQRGNYRQRILMEDWMLASAP*PEAPNL Trigger: CAGATTAGGAGCCTCAGGGCAAGGTGCAGAAGCGAG...CATCCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTTAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR-3UTR TCA 90 bp | TCTGTTTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGTGTACAAGACAGAAAGGCCATTGTTTACTTTaGGCAATTCCCTTCTGCCCT | + |
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Preference number: 2 (lower is better) Translates to: SVLKFLSQDLGVLCTRQKGHCLL*AIPFCP Trigger: AGGGCAGAAGGGAATTGCTCAAAGTAAACAATGGCC...TTTCTGTCTTGTACACAGCACACCCAGGTCCTGGGAAAGGAATTTTAAAACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR CCA 72 bp | GGACCTGGGTGTGCTGTGTACAAGACAGAAAAGAGCTaGAGAGCCAACCCCCTGGGCGCCATGTCAGTCACT | + |
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Preference number: 3 (lower is better) Translates to: GPGCAVYKTEKS*RANPLGAMSVT Trigger: AGTGACTGACATGGCGCCCAGGGGGTTGGCTCTCCAGCTCTTTTCTGTCTTGTACACAGCACACCCAGGTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR GCA 72 bp | CTGGAGAGCCAACCCCCTGGGCGCCATGTCAGTCACTaGACAGTAATTGAAACCAGGATGTATCATAAACAG | + |
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Preference number: 3 (lower is better) Translates to: LESQPPGRHVSH*TVIETRMYHKQ Trigger: CTGTTTATGATACATCCTGGTTTCAATTACTGTGCAGTGACTGACATGGCGCCCAGGGGGTTGGCTCTCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR TCA 72 bp | AGCTCGCTTCTGCACCTTGCCCTGAGGCTCCTAATCTaGCTTCATTCATTTTGTTGTTATGGCAGAACTATC | + |
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Preference number: 3 (lower is better) Translates to: SSLLHLALRLLI*LHSFCCYGRTI Trigger: GATAGTTCTGCCATAACAACAAAATGAATGAAGTCAGATTAGGAGCCTCAGGGCAAGGTGCAGAAGCGAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR TCA 72 bp | GGACTAGCCCGAAGAAAATGGCGAATATTGCATAAATaGCCTAGAAGAGTATTTCCAGCTCGCTTCTGCACC | + |
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Preference number: 3 (lower is better) Translates to: GLARRKWRILHK*PRRVFPARFCT Trigger: GGTGCAGAAGCGAGCTGGAAATACTCTTCTAGGTCATTTATGCAATATTCGCCATTTTCTTCGGGCTAGTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| 3UTR TCA 72 bp | CTAAACCACAGAGAGGTAATTATAGACAACGAATCTTaGTGGAGGACTGGATGCCATCTAACTGGGACTAGC | + |
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Preference number: 3 (lower is better) Translates to: LNHREVIIDNES*WRTGCHLTGTS Trigger: GCTAGTCCCAGTTAGATGGCATCCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR GCA 90 bp | CTGGAGAGCCAACCCCCTGGGCGCCATGTCAGTCACTGCACAGTAATTGAAACCCAGCTGGAATGGACTTaGCCAGGTGATGGCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: LESQPPGRHVSHCTVIETQLEWT*PGDGPQ Trigger: CTGTGGGCCATCACCTGGGCAAGTCCATTCCAGCTG...GGTTTCAATTACTGTGCAGTGACTGACATGGCGCCCAGGGGGTTGGCTCTCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR GCA 90 bp | AGAAAAGAGCTGGAGAGCCAACCCCCTGGGCGCCATGTCAGTCACTGCACAGTAGTGGAGTGTGGCCAATaGTGTAAACCAGTTGAGGTT | + |
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Preference number: 4 (lower is better) Translates to: RKELESQPPGRHVSHCTVVECGQ*CKPVEV Trigger: AACCTCAACTGGTTTACAGCATTGGCCACACTCCAC...TACTGTGCAGTGACTGACATGGCGCCCAGGGGGTTGGCTCTCCAGCTCTTTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR TCA 90 bp | AATGAGACGGAGATCTGTTTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGTGTCCCCGTGGACACCCTaGAGAGAGTACATGGAGCCG | + |
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Preference number: 4 (lower is better) Translates to: NETEICFKIPFPGPGCAVSPWTP*REYMEP Trigger: CGGCTCCATGTACTCTCTTCAGGGTGTCCACGGGGA...CACAGCACACCCAGGTCCTGGGAAAGGAATTTTAAAACAGATCTCCGTCTCATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR TCA 90 bp | TTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGTGTACAAGACAGAAAAGAGCATGGACTTGCCCAGGTaGTGGCCCACAGAGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: FKIPFPGPGCAVYKTEKSMDLPR*WPTERP Trigger: TGGCCTCTCTGTGGGCCATCACCTGGGCAAGTCCAT...GCTCTTTTCTGTCTTGTACACAGCACACCCAGGTCCTGGGAAAGGAATTTTAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR GCA 90 bp | CCTTGCCCTGAGGCTCCTAATCTGACTTCATTCATTTTGTTGTTATGGCAGAACCATCCTTCCAGGATCTaGATGCGGGCATCTGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: PCPEAPNLTSFILLLWQNHPSRI*MRASGG Trigger: TCCACCAGATGCCCGCATGCAGATCCTGGAAGGATG...GTTCTGCCATAACAACAAAATGAATGAAGTCAGATTAGGAGCCTCAGGGCAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | TCTGTTTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGTGTACAAGACAGAAACCTGAAGAGAGTACATaGAGCCGCTACCCCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SVLKFLSQDLGVLCTRQKPEEST*SRYPQW Trigger: CCACTGGGGGTAGCGGCTCCATGTACTCTCTTCAGG...TTTCTGTCTTGTACACAGCACACCCAGGTCCTGGGAAAGGAATTTTAAAACAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | CCTAAACCACAGAGAGGTAATTATAGACAACGAATCTTGATGGAGGACTGGATGCTGCATGCGGGCATCTaGTGGAGTGTGGCCAATGCT | + |
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Preference number: 4 (lower is better) Translates to: PKPQRGNYRQRILMEDWMLHAGI*WSVANA Trigger: AGCATTGGCCACACTCCACCAGATGCCCGCATGCAG...CATCCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTTAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | TCGGCCATTGTTTACTTTGAGCAATTCCCTTCTGCCCTAAACCACAGAGAGGTAGATCTGGTTGTCAGCTaGAATGGACTTGCCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: SAIVYFEQFPSALNHREVDLVVS*NGLAQV Trigger: CACCTGGGCAAGTCCATTCCAGCTGACAACCAGATC...TACCTCTCTGTGGTTTAGGGCAGAAGGGAATTGCTCAAAGTAAACAATGGCCGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | TGCCCTAAACCACAGAGAGGTAATTATAGACAACGAATCTTGATGGAGGACTGGTTCGGCCACAATATCTaGGCTCAGGCGTCCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: CPKPQRGNYRQRILMEDWFGHNI*AQASFL Trigger: AAGGAAGGACGCCTGAGCCCAGATATTGTGGCCGAA...CCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTTAGGGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR TCA 90 bp | AATAGAAAGAATGAGACGGAGATCTGTTTTAAAATTCCTTTCCCAGGACCTGGGGAATCGGCCAGAGAATaGCGTTCATGTCCCCGTGGA | + |
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Preference number: 4 (lower is better) Translates to: NRKNETEICFKIPFPGPGESARE*RSCPRG Trigger: TCCACGGGGACATGAACGTCATTCTCTGGCCGATTC...CCCAGGTCCTGGGAAAGGAATTTTAAAACAGATCTCCGTCTCATTCTTTCTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | AAACCACAGAGAGGTAATTATAGACAACGAATCTTGATGGAGGACTGGATGCCATGGAGCAAAATAGAGTaGGGTCTCCTCCCAGACGGT | + |
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Preference number: 4 (lower is better) Translates to: KPQRGNYRQRILMEDWMPWSKIE*GLLPDG Trigger: ACCGTCTGGGAGGAGACCCCACTCTATTTTGCTCCA...TGGCATCCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | CACTGCACAGTAATTGAAACCAGGATGTATCATAAACAGGCTTTAGCTAACTGCACCAGCCTTTCAGAATaGCTGGCACCCCAAACCACT | + |
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Preference number: 4 (lower is better) Translates to: HCTVIETRMYHKQALANCTSLSE*LAPQTT Trigger: AGTGGTTTGGGGTGCCAGCCATTCTGAAAGGCTGGT...GCAGTTAGCTAAAGCCTGTTTATGATACATCCTGGTTTCAATTACTGTGCAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | TTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGTGTACAAGACAGAAAAGAGCGTCAAACAGGCTGCTTaGAGCAAAATAGAGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: FKIPFPGPGCAVYKTEKSVKQAA*SKIEWG Trigger: ACCCCACTCTATTTTGCTCCAAGCAGCCTGTTTGAC...GCTCTTTTCTGTCTTGTACACAGCACACCCAGGTCCTGGGAAAGGAATTTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | AATGAGACGGAGATCTGTTTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGTGTTTCTAGCTTTGATCTaGTTGTCAGCTGGAATGGAC | + |
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Preference number: 4 (lower is better) Translates to: NETEICFKIPFPGPGCAVFLALI*LSAGMD Trigger: GTCCATTCCAGCTGACAACCAGATCAAAGCTAGAAA...CACAGCACACCCAGGTCCTGGGAAAGGAATTTTAAAACAGATCTCCGTCTCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR TCA 90 bp | AGAATGAGACGGAGATCTGTTTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGATTAAGAATCCTGCCTaGAAGTTTAGGTCAAACAGG | + |
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Preference number: 4 (lower is better) Translates to: RMRRRSVLKFLSQDLGVLIKNPA*KFRSNR Trigger: CCTGTTTGACCTAAACTTTCAGGCAGGATTCTTAAT...CAGCACACCCAGGTCCTGGGAAAGGAATTTTAAAACAGATCTCCGTCTCATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR GCA 90 bp | AAACCACAGAGAGGTAATTATAGACAACGAATCTTGATGGAGGACTGGATGCCATTAGGTCAAACAGGCTaGTTGGAGCAAAATAGAGTG | + |
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Preference number: 4 (lower is better) Translates to: KPQRGNYRQRILMEDWMPLGQTG*LEQNRV Trigger: CACTCTATTTTGCTCCAAGCAGCCTGTTTGACCTAA...TGGCATCCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CCA 90 bp | AATAGAAAGAATGAGACGGAGATCTGTTTTAAAATTCCTTTCCCAGGACCTGGGCCCAAACCACTGCAATaGGAACTGAAATATCACCAG | + |
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Preference number: 4 (lower is better) Translates to: NRKNETEICFKIPFPGPGPKPLQ*ELKYHQ Trigger: CTGGTGATATTTCAGTTCCCATTGCAGTGGTTTGGG...CCCAGGTCCTGGGAAAGGAATTTTAAAACAGATCTCCGTCTCATTCTTTCTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS GCA 90 bp | TGGCACCCCAAACCACTGCAATGGGAACTGAAATATCACCAGGTCTaGAGCTTCCAGCTTCTTGTGTTCGGCCACAATATCTGGGCTCAG | + |
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Preference number: 5 (lower is better) Translates to: WHPKPLQWELKYHQV*SFQLLVFGHNIWAQ Trigger: CTGAGCCCAGATATTGTGGCCGAACACAAGAAGCTGGAAGCTGCAGACCTGGTGATATTTCAGTTCCCATTGCAGTGGTTTGGGGTGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS GCA 90 bp | ATCCTTCCAGGATCTGCATGCGGGCATCTGGTGGAGTGTGGCCAATaGTGTAAACCAGTTGAGGTTCTAAGACCTGGAAGCCACAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: ILPGSACGHLVECGQ*CKPVEVLRPGSHRN Trigger: GTTTCTGTGGCTTCCAGGTCTTAGAACCTCAACTGGTTTACAGCATTGGCCACACTCCACCAGATGCCCGCATGCAGATCCTGGAAGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS TCA 90 bp | CTCTCTTCTTCAGAGCCTCTACAGCAGCCTCCTTCATGGCGTAGTTaGATGATGTCTTCTCTGAATGGGCCAGTACAATCAGGGCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: LSSSEPLQQPPSWRS*MMSSLNGPVQSGLF Trigger: GAAGAGCCCTGATTGTACTGGCCCATTCAGAGAAGACATCATTCAACTACGCCATGAAGGAGGCTGCTGTAGAGGCTCTGAAGAAGAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS TCA 90 bp | TTTCTAGCTTTGATCTGGTTGTCAGCTGGAATGGACTTGCCCAGGTaGTGGCCCACAGAGAGGCCAAACTTGTTCTTCTTCTGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: FLALIWLSAGMDLPR*WPTERPNLFFFCSS Trigger: AGAGGAGCAGAAGAAGAACAAGTTTGGCCTCTCTGTGGGCCATCACCTGGGCAAGTCCATTCCAGCTGACAACCAGATCAAAGCTAGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 90 bp | AAATCCTGCTACGAGCACTCTCTCAAACCAGCCTTTCAGAATGGCTaGCACCCCAAACCACTGCAATGGGAACTGAAATATCACCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: KSCYEHSLKPAFQNG*HPKPLQWELKYHQV Trigger: GACCTGGTGATATTTCAGTTCCCATTGCAGTGGTTTGGGGTGCCAGCCATTCTGAAAGGCTGGTTTGAGAGAGTGCTCGTAGCAGGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 90 bp | AGGCAAATCCTGCTACGAGCACTCTCTCAAACCAGCCTTTCAGAATaGCTGGCACCCCAAACCACTGCAATGGGAACTGAAATATCACCA | + |
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Preference number: 5 (lower is better) Translates to: RQILLRALSQTSLSE*LAPQTTAMGTEISP Trigger: TGGTGATATTTCAGTTCCCATTGCAGTGGTTTGGGGTGCCAGCCATTCTGAAAGGCTGGTTTGAGAGAGTGCTCGTAGCAGGATTTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CAA 90 bp | AAGAATGAGACGGAGATCTGTTTTAAAATTCCTTTCCCAGGACCTGGGTGTGCTGGTCAAACAGGCTGCTaGGAGCAAAATAGAGTGGGG | + |
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Preference number: 5 (lower is better) Translates to: KNETEICFKIPFPGPGCAGQTGC*EQNRVG Trigger: CCCCACTCTATTTTGCTCCAAGCAGCCTGTTTGACC...AGCACACCCAGGTCCTGGGAAAGGAATTTTAAAACAGATCTCCGTCTCATTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS TCA 90 bp | CTCAGGCGTCCTTCCTTATATGCTAGAGATGACTCGGAAGGATACTaGAAGTTCTTCGAGTCCTTCAGCTCACCTGTGATGTCATTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LRRPSLYARDDSEGY*KFFESFSSPVMSFL Trigger: CAGAAATGACATCACAGGTGAGCTGAAGGACTCGAAGAACTTTCAGTATCCTTCCGAGTCATCTCTAGCATATAAGGAAGGACGCCTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CAA 90 bp | TGCCCTAAACCACAGAGAGGTAATTATAGACAACGAATCTTGATGGAGGACTGGACAGAGAGGCCAAACTaGTTCTTCTTCTGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: CPKPQRGNYRQRILMEDWTERPN*FFFCSS Trigger: AGAGGAGCAGAAGAAGAACAAGTTTGGCCTCTCTGT...CCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTTAGGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CAA 90 bp | ATGAAAGCAAGTCAGACAAGCTGGGGAAAAAGAAAGCTGCGTCTAACTATATGTGCAGCTTCCAGCTTCTaGTGTTCGGCCACAATATCT | + |
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Preference number: 5 (lower is better) Translates to: MKASQTSWGKRKLRLTICAASSF*CSATIS Trigger: AGATATTGTGGCCGAACACAAGAAGCTGGAAGCTGC...ACATATAGTTAGACGCAGCTTTCTTTTTCCCCAGCTTGTCTGACTTGCTTTCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS-3UTR CAA 90 bp | AAACCACAGAGAGGTAATTATAGACAACGAATCTTGATGGAGGACTGGATGCCACTAGCTTTGATCTGGTaGTCAGCTGGAATGGACTTG | + |
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Preference number: 5 (lower is better) Translates to: KPQRGNYRQRILMEDWMPLALIW*SAGMDL Trigger: CAAGTCCATTCCAGCTGACAACCAGATCAAAGCTAG...TGGCATCCAGTCCTCCATCAAGATTCGTTGTCTATAATTACCTCTCTGTGGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS TCA 72 bp | GGCCAGAGAATGACGTTCATGTCCCCGTGGACACCCTaGAGAGAGTACATGGAGCCGCTACCCCCAGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GQRMTFMSPWTP*REYMEPLPPVV Trigger: CACCACTGGGGGTAGCGGCTCCATGTACTCTCTTCAGGGTGTCCACGGGGACATGAACGTCATTCTCTGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS TCA 72 bp | AGAAACGCAGGATGCCACTCTGAATCGGCCAGAGAATaGCGTTCATGTCCCCGTGGACACCCTGAAGAGAGT | + |
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Preference number: 6 (lower is better) Translates to: RNAGCHSESARE*RSCPRGHPEES Trigger: ACTCTCTTCAGGGTGTCCACGGGGACATGAACGTCATTCTCTGGCCGATTCAGAGTGGCATCCTGCGTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS GCA 72 bp | GGATCTGCATGCGGGCATCTGGTGGAGTGTGGCCAATaGTGTAAACCAGTTGAGGTTCTAAGACCTGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: GSACGHLVECGQ*CKPVEVLRPGS Trigger: GCTTCCAGGTCTTAGAACCTCAACTGGTTTACAGCATTGGCCACACTCCACCAGATGCCCGCATGCAGATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 72 bp | CTTCCATCCTTCCAGGATCTGCATGCGGGCATCTGGTaGAGTGTGGCCAATGCTGTAAACCAGTTGAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: LPSFQDLHAGIW*SVANAVNQLRF Trigger: GAACCTCAACTGGTTTACAGCATTGGCCACACTCCACCAGATGCCCGCATGCAGATCCTGGAAGGATGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 72 bp | CTGCTACGAGCACTCTCTCAAACCAGCCTTTCAGAATaGCTGGCACCCCAAACCACTGCAATGGGAACTGAA | + |
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Preference number: 6 (lower is better) Translates to: LLRALSQTSLSE*LAPQTTAMGTE Trigger: TTCAGTTCCCATTGCAGTGGTTTGGGGTGCCAGCCATTCTGAAAGGCTGGTTTGAGAGAGTGCTCGTAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 72 bp | TTTCTTCCATCCTTCCAGGATCTGCATGCGGGCATCTaGTGGAGTGTGGCCAATGCTGTAAACCAGTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: FLPSFQDLHAGI*WSVANAVNQLR Trigger: CCTCAACTGGTTTACAGCATTGGCCACACTCCACCAGATGCCCGCATGCAGATCCTGGAAGGATGGAAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS TCA 72 bp | TTGATCTGGTTGTCAGCTGGAATGGACTTGCCCAGGTaGTGGCCCACAGAGAGGCCAAACTTGTTCTTCTTC | + |
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Preference number: 6 (lower is better) Translates to: LIWLSAGMDLPR*WPTERPNLFFF Trigger: GAAGAAGAACAAGTTTGGCCTCTCTGTGGGCCATCACCTGGGCAAGTCCATTCCAGCTGACAACCAGATCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CAA 72 bp | AGAATCCTGCCTGAAAGTTTAGGTCAAACAGGCTGCTaGGAGCAAAATAGAGTGGGGTCTCCTCCCAGACGG | + |
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Preference number: 6 (lower is better) Translates to: RILPESLGQTGC*EQNRVGSPPRR Trigger: CCGTCTGGGAGGAGACCCCACTCTATTTTGCTCCAAGCAGCCTGTTTGACCTAAACTTTCAGGCAGGATTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 72 bp | TACGAGCACTCTCTCAAACCAGCCTTTCAGAATGGCTaGCACCCCAAACCACTGCAATGGGAACTGAAATAT | + |
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Preference number: 6 (lower is better) Translates to: YEHSLKPAFQNG*HPKPLQWELKY Trigger: ATATTTCAGTTCCCATTGCAGTGGTTTGGGGTGCCAGCCATTCTGAAAGGCTGGTTTGAGAGAGTGCTCGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 72 bp | CCCCCAGTGGTGATAGAAAGCAAGGTCTTCTTATTCTaGAAAGGACCGTTGTCGTACATGGCAGCATATGTG | + |
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Preference number: 6 (lower is better) Translates to: PPVVIESKVFLF*KGPLSYMAAYV Trigger: CACATATGCTGCCATGTACGACAACGGTCCTTTCCAGAATAAGAAGACCTTGCTTTCTATCACCACTGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS GCA 72 bp | AAACCACTGCAATGGGAACTGAAATATCACCAGGTCTaGAGCTTCCAGCTTCTTGTGTTCGGCCACAATATC | + |
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Preference number: 6 (lower is better) Translates to: KPLQWELKYHQV*SFQLLVFGHNI Trigger: GATATTGTGGCCGAACACAAGAAGCTGGAAGCTGCAGACCTGGTGATATTTCAGTTCCCATTGCAGTGGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS GCA 72 bp | GTTGTCGTACATGGCAGCATATGTGTAGGCAAATCCTaGTACGAGCACTCTCTCAAACCAGCCTTTCAGAAT | + |
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Preference number: 6 (lower is better) Translates to: VVVHGSICVGKS*YEHSLKPAFQN Trigger: ATTCTGAAAGGCTGGTTTGAGAGAGTGCTCGTAGCAGGATTTGCCTACACATATGCTGCCATGTACGACAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS GCA 72 bp | TTAAGAATCCTGCCTGAAAGTTTAGGTCAAACAGGCTaGTTGGAGCAAAATAGAGTGGGGTCTCCTCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: LRILPESLGQTG*LEQNRVGSPPR Trigger: TCTGGGAGGAGACCCCACTCTATTTTGCTCCAAGCAGCCTGTTTGACCTAAACTTTCAGGCAGGATTCTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS CCA 72 bp | AGGTCTTCTTATTCTGGAAAGGACCGTTGTCGTACATaGCAGCATATGTGTAGGCAAATCCTGCTACGAGCA | + |
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Preference number: 6 (lower is better) Translates to: RSSYSGKDRCRT*QHMCRQILLRA Trigger: TGCTCGTAGCAGGATTTGCCTACACATATGCTGCCATGTACGACAACGGTCCTTTCCAGAATAAGAAGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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| CDS TCA 72 bp | CCTTCCTTATATGCTAGAGATGACTCGGAAGGATACTaGAAGTTCTTCGAGTCCTTCAGCTCACCTGTGATG | + |
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Preference number: 6 (lower is better) Translates to: PSLYARDDSEGY*KFFESFSSPVM Trigger: CATCACAGGTGAGCTGAAGGACTCGAAGAACTTTCAGTATCCTTCCGAGTCATCTCTAGCATATAAGGAAGG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003947.9 |
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