Pregenerated sensors for NPY4R (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048337Ensembl transcript IDs: ENSMUST00000052164.4
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGTGGTGGCTCCAGGGCAACTGTCCAGGACATCAGTCGCACACATaGTCGGTAAGGGACCAGAACCAGAAAGTCCATCAGACCTGTTCA | + |
|
Preference number: 1 (lower is better) Translates to: KWWLQGNCPGHQSHT*SVRDQNQKVHQTCS Trigger: TGAACAGGTCTGATGGACTTTCTGGTTCTGGTCCCTTACCGAGCATGTGTGCGACTGATGTCCTGGACAGTTGCCCTGGAGCCACCACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 90 bp | AGCTGGAGATGCAGCCAAAAAGCTGAGACAGGTAGAAAGAAGTGGTaGCTCCAGGGCAACTGTCCAGGACATCAGTCGCACACATGCTCG | + |
|
Preference number: 1 (lower is better) Translates to: SWRCSQKAETGRKKW*LQGNCPGHQSHTCS Trigger: CGAGCATGTGTGCGACTGATGTCCTGGACAGTTGCCCTGGAGCCACCACTTCTTTCTACCTGTCTCAGCTTTTTGGCTGCATCTCCAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 90 bp | GACCAAGAGCAATCTTGGCATATCCTTCTTTCTAAGGACACACACTaGGGATGCCTTGGGCCCCATTCAGCAGCCAGGAGGGACACTGAA | + |
|
Preference number: 1 (lower is better) Translates to: DQEQSWHILLSKDTH*GCLGPHSAARRDTE Trigger: TTCAGTGTCCCTCCTGGCTGCTGAATGGGGCCCAAGGCATCCTCAGTGTGTGTCCTTAGAAAGAAGGATATGCCAAGATTGCTCTTGGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 90 bp | GGAAGGAAAACAGAAGATGTCAGGTGGAGCCTCTACATCCCACCCTaGCTCCTAACACCTTCACTAAATATCTCATCTGGACCACTGGCA | + |
|
Preference number: 1 (lower is better) Translates to: GRKTEDVRWSLYIPP*LLTPSLNISSGPLA Trigger: TGCCAGTGGTCCAGATGAGATATTTAGTGAAGGTGTTAGGAGTCAGGGTGGGATGTAGAGGCTCCACCTGACATCTTCTGTTTTCCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 90 bp | CCTGTGAGGAGTTACATAGAAATACTGCGAGATCCCAGCTTTTACTaGGGCAGTTTCTGGTACGCAGCCGTGGAAACTGATGGGAAAACT | + |
|
Preference number: 1 (lower is better) Translates to: PVRSYIEILRDPSFY*GSFWYAAVETDGKT Trigger: AGTTTTCCCATCAGTTTCCACGGCTGCGTACCAGAAACTGCCCCAGTAAAAGCTGGGATCTCGCAGTATTTCTATGTAACTCCTCACAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 90 bp | TGTCCACATGCAGGCAGAGAAATGACAGCCAAAACAGCATACCTTTaGAGCACTCCAAAGTTTAAAGATGCTCAGAACAGGGATCCACGC | + |
|
Preference number: 1 (lower is better) Translates to: CPHAGREMTAKTAYL*STPKFKDAQNRDPR Trigger: GCGTGGATCCCTGTTCTGAGCATCTTTAAACTTTGGAGTGCTGCAAAGGTATGCTGTTTTGGCTGTCATTTCTCTGCCTGCATGTGGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 90 bp | AATAAAAGCTTACATTCTGGAGCTTCTGAGACGAGGAGAAGTCTGTaGCCCCAGGTCAGTAAGTTCAGACAATGTCATCTTGCCAGGGTG | + |
|
Preference number: 1 (lower is better) Translates to: NKSLHSGASETRRSL*PQVSKFRQCHLARV Trigger: CACCCTGGCAAGATGACATTGTCTGAACTTACTGACCTGGGGCCACAGACTTCTCCTCGTCTCAGAAGCTCCAGAATGTAAGCTTTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 90 bp | AATCGGTGCTCAGAAAGGAAGCCTGGCAGGCGTGCTAGACAAGCCTaGCTATACGGTAAGATCCTACTTCAAAAGAAAAGAAATTGTCTC | + |
|
Preference number: 1 (lower is better) Translates to: NRCSERKPGRRARQA*LYGKILLQKKRNCL Trigger: GAGACAATTTCTTTTCTTTTGAAGTAGGATCTTACCGTATAGGCAGGCTTGTCTAGCACGCCTGCCAGGCTTCCTTTCTGAGCACCGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 90 bp | CAAGAGTGGTTTAAAAGCTCATCTTTCATCATATGTGATGGCGTATaGCTTAATCGGTGCTCAGAAAGGAAGCCTGGCAGGCGTGCTAGA | + |
|
Preference number: 1 (lower is better) Translates to: QEWFKSSSFIICDGV*LNRCSERKPGRRAR Trigger: TCTAGCACGCCTGCCAGGCTTCCTTTCTGAGCACCGATTAAGGCATACGCCATCACATATGATGAAAGATGAGCTTTTAAACCACTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 90 bp | AAAGCAAGTCGAGAGGAAAAGGCCAGAGTTAAACAGCTGAGCTCTTaGTGCCAGGGTTTGATACGACTTCACATAATCTCAGAAATCCCA | + |
|
Preference number: 1 (lower is better) Translates to: KASREEKARVKQLSS*CQGLIRLHIISEIP Trigger: TGGGATTTCTGAGATTATGTGAAGTCGTATCAAACCCTGGCAGCAAGAGCTCAGCTGTTTAACTCTGGCCTTTTCCTCTCGACTTGCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 90 bp | TCAGTGTGGGGTAAGTCTCCCCTGAGACTACTGTGTTTACTGTATTaGAGATTGCTCTATTCAGTCAGAACTGGACTGCAACATCCTATC | + |
|
Preference number: 1 (lower is better) Translates to: SVWGKSPLRLLCLLY*RLLYSVRTGLQHPI Trigger: GATAGGATGTTGCAGTCCAGTTCTGACTGAATAGAGCAATCTTCAATACAGTAAACACAGTAGTCTCAGGGGAGACTTACCCCACACTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 90 bp | ACCAGAAAGTCCATCAGACCTGTTCAGTGTGGGGTAAGTCTCCCCTaGGACTACTGTGTTTACTGTATTGAAGATTGCTCTATTCAGTCA | + |
|
Preference number: 1 (lower is better) Translates to: TRKSIRPVQCGVSLP*DYCVYCIEDCSIQS Trigger: TGACTGAATAGAGCAATCTTCAATACAGTAAACACAGTAGTCTCAGGGGAGACTTACCCCACACTGAACAGGTCTGATGGACTTTCTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 90 bp | TCTTGCCAGGGTGGGCCTGAGAGTCTGGGTTTTGCTCAAAGTAGATaGTATGAAGTAGTCAGCAAAAGACTATATCAGATAACAAGAGTG | + |
|
Preference number: 1 (lower is better) Translates to: SCQGGPESLGFAQSR*YEVVSKRLYQITRV Trigger: CACTCTTGTTATCTGATATAGTCTTTTGCTGACTACTTCATATCATCTACTTTGAGCAAAACCCAGACTCTCAGGCCCACCCTGGCAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 90 bp | GATGAAAAAGCTCATGAGAACTATGTCCACATGCAGGCAGAGAAATaGCAGCCAAAACAGCATACCTTTGCAGCACTCCAAAGTTTAAAG | + |
|
Preference number: 1 (lower is better) Translates to: DEKAHENYVHMQAEK*QPKQHTFAALQSLK Trigger: CTTTAAACTTTGGAGTGCTGCAAAGGTATGCTGTTTTGGCTGTCATTTCTCTGCCTGCATGTGGACATAGTTCTCATGAGCTTTTTCATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR TCA 90 bp | CCCTACCACTCCTACAGAGGAAGCAGCTACCAACCTCCCCATAGGAGCTCTCCCGGGGTAAGTCTCCCCTaGGACTACTGTGTTTACTGT | + |
|
Preference number: 2 (lower is better) Translates to: PYHSYRGSSYQPPHRSSPGVSLP*DYCVYC Trigger: ACAGTAAACACAGTAGTCTCAGGGGAGACTTACCCC...GGGAGAGCTCCTATGGGGAGGTTGGTAGCTGCTTCCTCTGTAGGAGTGGTAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR CCA 90 bp | ACCACTCCTACAGAGGAAGCAGCTACCAACCTCCCCATAGGAGCTCTCCCCAGCTCTTGCCAACCTATCTaGGCCCCAAAAGCCAGAAAT | + |
|
Preference number: 2 (lower is better) Translates to: TTPTEEAATNLPIGALPSSCQPI*APKARN Trigger: ATTTCTGGCTTTTGGGGCCCAGATAGGTTGGCAAGA...GCTGGGGAGAGCTCCTATGGGGAGGTTGGTAGCTGCTTCCTCTGTAGGAGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR CCA 90 bp | ACCACTCCTACAGAGGAAGCAGCTACCAACCTCCCCATAGGAGCTCTCCCCAGCGTCACCCTAACTAAGTaGGAAGGAAAACAGAAGATG | + |
|
Preference number: 2 (lower is better) Translates to: TTPTEEAATNLPIGALPSVTLTK*EGKQKM Trigger: CATCTTCTGTTTTCCTTCCCACTTAGTTAGGGTGAC...GCTGGGGAGAGCTCCTATGGGGAGGTTGGTAGCTGCTTCCTCTGTAGGAGTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR CCA 90 bp | ACCACTCCTACAGAGGAAGCAGCTACCAACCTCCCCATAGGAGCTCTCCCCAGCAAACATCGAAGGAGCTaGCAACCAAGAAATCTCAAG | + |
|
Preference number: 2 (lower is better) Translates to: TTPTEEAATNLPIGALPSKHRRS*QPRNLK Trigger: CTTGAGATTTCTTGGTTGCCAGCTCCTTCGATGTTT...GCTGGGGAGAGCTCCTATGGGGAGGTTGGTAGCTGCTTCCTCTGTAGGAGTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CAA 90 bp | AATCTTGGCATATCCTTCTTTCTAAGGACACACACTGAGGATGCCTaGGGCCCCATTCAGCAGCCAGGAGGGACACTGAACTTTGACCAC | + |
|
Preference number: 2 (lower is better) Translates to: NLGISFFLRTHTEDA*GPIQQPGGTLNFDH Trigger: GTGGTCAAAGTTCAGTGTCCCTCCTGGCTGCTGAATGGGGCCCAAGGCATCCTCAGTGTGTGTCCTTAGAAAGAAGGATATGCCAAGATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR GCA 90 bp | CAGCCAGCCACTTCTGACTCTAATACCCTTGCAGCTCAAGCCACAAAGTTCCCTAAGCTTCAAGTCTCTTaGCAACCTATCTGGGCCCCA | + |
|
Preference number: 2 (lower is better) Translates to: QPATSDSNTLAAQATKFPKLQVS*QPIWAP Trigger: TGGGGCCCAGATAGGTTGGCAAGAGACTTGAAGCTT...AGGGAACTTTGTGGCTTGAGCTGCAAGGGTATTAGAGTCAGAAGTGGCTGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR GCA 90 bp | CCCTACCACTCCTACAGAGGAAGCAGCTACCAACCTCCCCATAGGAGCTCTCCCCATATTTTGACCAGATaGAGATTTGCACTCAGCGTA | + |
|
Preference number: 2 (lower is better) Translates to: PYHSYRGSSYQPPHRSSPHILTR*RFALSV Trigger: TACGCTGAGTGCAAATCTGCATCTGGTCAAAATATG...GGGAGAGCTCCTATGGGGAGGTTGGTAGCTGCTTCCTCTGTAGGAGTGGTAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR TCA 90 bp | CCTGACTCAGAGATCTCTCAGAAGCAAAGGGCTAAACCATCTGAATGCCAAGCTCCCAAAAGCCAGAAATaGCAGGATGCTATCACAGCC | + |
|
Preference number: 2 (lower is better) Translates to: PDSEISQKQRAKPSECQAPKSQK*QDAITA Trigger: GGCTGTGATAGCATCCTGTCATTTCTGGCTTTTGGG...AGCTTGGCATTCAGATGGTTTAGCCCTTTGCTTCTGAGAGATCTCTGAGTCAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR CCA 90 bp | CTCCTAACACCTTCACTAAATATCTCATCTGGACCACTGGCAACCTGGTCTCATCAGACCTGTTCAGTGTaGGGTAAGTCTCCCCTGAGA | + |
|
Preference number: 2 (lower is better) Translates to: LLTPSLNISSGPLATWSHQTCSV*GKSPLR Trigger: TCTCAGGGGAGACTTACCCCACACTGAACAGGTCTG...ATGAGACCAGGTTGCCAGTGGTCCAGATGAGATATTTAGTGAAGGTGTTAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR CCA 90 bp | AAAGCTGAGACAGGTAGAAAGAAGTGGTGGCTCCAGGGCAACTGTCCAGGACATGACCAAGAGCAATCTTaGCATATCCTTCTTTCTAAG | + |
|
Preference number: 2 (lower is better) Translates to: KAETGRKKWWLQGNCPGHDQEQS*HILLSK Trigger: CTTAGAAAGAAGGATATGCCAAGATTGCTCTTGGTC...ATGTCCTGGACAGTTGCCCTGGAGCCACCACTTCTTTCTACCTGTCTCAGCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR CCA 90 bp | ACTGTTCACAGTACAGTTTTAAGTGAAACGCAGCAGAATGCAAAGGGCGGGCTCACATCCTATCTTATGTaGACCAAGAGCAATCTTGGC | + |
|
Preference number: 2 (lower is better) Translates to: TVHSTVLSETQQNAKGGLTSYLM*TKSNLG Trigger: GCCAAGATTGCTCTTGGTCCACATAAGATAGGATGT...GAGCCCGCCCTTTGCATTCTGCTGCGTTTCACTTAAAACTGTACTGTGAACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR TCA 90 bp | CTTTTCAGCAAGCACTTTATTAAGCAGACTCCCAACTCCCAGCACCTGCTTCTAACACCCAACATCCCTTaGAAGAACATAAGCACATCA | + |
|
Preference number: 2 (lower is better) Translates to: LFSKHFIKQTPNSQHLLLTPNIP*KNISTS Trigger: TGATGTGCTTATGTTCTTTCAAGGGATGTTGGGTGT...TAGAAGCAGGTGCTGGGAGTTGGGAGTCTGCTTAATAAAGTGCTTGCTGAAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR GCA 90 bp | CTCCTAACACCTTCACTAAATATCTCATCTGGACCACTGGCAACCTGGTCTCATGCTAAACCATCTGAATaGCAAGCTTCAAGTCTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: LLTPSLNISSGPLATWSHAKPSE*QASSLL Trigger: CAAGAGACTTGAAGCTTGGCATTCAGATGGTTTAGC...ATGAGACCAGGTTGCCAGTGGTCCAGATGAGATATTTAGTGAAGGTGTTAGGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR TCA 90 bp | ACTGTTCACAGTACAGTTTTAAGTGAAACGCAGCAGAATGCAAAGGGCGGGCTCCTGTGTTTACTGTATTaGAGATTGCTCTATTCAGTC | + |
|
Preference number: 2 (lower is better) Translates to: TVHSTVLSETQQNAKGGLLCLLY*RLLYSV Trigger: GACTGAATAGAGCAATCTTCAATACAGTAAACACAG...GAGCCCGCCCTTTGCATTCTGCTGCGTTTCACTTAAAACTGTACTGTGAACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CAA 90 bp | ACCTTCACTAAATATCTCATCTGGACCACTGGCAACCTGGTCTCATaGAGCCTAATTAATAAAAGCTTACATTCTGGAGCTTCTGAGACG | + |
|
Preference number: 2 (lower is better) Translates to: TFTKYLIWTTGNLVS*SLINKSLHSGASET Trigger: CGTCTCAGAAGCTCCAGAATGTAAGCTTTTATTAATTAGGCTCAATGAGACCAGGTTGCCAGTGGTCCAGATGAGATATTTAGTGAAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | CTCCAGGGCAACTGTCCAGGACATCAGTCGCACACATaGTCGGTAAGGGACCAGAACCAGAAAGTCCATCAG | + |
|
Preference number: 3 (lower is better) Translates to: LQGNCPGHQSHT*SVRDQNQKVHQ Trigger: CTGATGGACTTTCTGGTTCTGGTCCCTTACCGAGCATGTGTGCGACTGATGTCCTGGACAGTTGCCCTGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | CAATCTTGGCATATCCTTCTTTCTAAGGACACACACTaGGGATGCCTTGGGCCCCATTCAGCAGCCAGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: QSWHILLSKDTH*GCLGPHSAARR Trigger: CCTCCTGGCTGCTGAATGGGGCCCAAGGCATCCTCAGTGTGTGTCCTTAGAAAGAAGGATATGCCAAGATTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | GACATAGATGAAGACTTTTGGGCCAGGCATCTGTACTaGGTGGCTGTGAGAGTCAGCCAGCCACTTCTGACT | + |
|
Preference number: 3 (lower is better) Translates to: DIDEDFWARHLY*VAVRVSQPLLT Trigger: AGTCAGAAGTGGCTGGCTGACTCTCACAGCCACTCAGTACAGATGCCTGGCCCAAAAGTCTTCATCTATGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | AGCACTTTATTAAGCAGACTCCCAACTCCCAGCACCTaGTTCTACCAGCACCCAACCCATACTGAAACACCC | + |
|
Preference number: 3 (lower is better) Translates to: STLLSRLPTPST*FYQHPTHTETP Trigger: GGGTGTTTCAGTATGGGTTGGGTGCTGGTAGAAGCAGGTGCTGGGAGTTGGGAGTCTGCTTAATAAAGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR-3UTR CAA 90 bp | CTCCTAACACCTTCACTAAATATCTCATCTGGACCACTGGCAACCTGGTCTCATCAAGCTTCAAGTCTCTaGCCAACCTATCTGGGCCCC | + |
|
Preference number: 3 (lower is better) Translates to: LLTPSLNISSGPLATWSHQASSL*PTYLGP Trigger: GGGGCCCAGATAGGTTGGCAAGAGACTTGAAGCTTG...ATGAGACCAGGTTGCCAGTGGTCCAGATGAGATATTTAGTGAAGGTGTTAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | TCCCAGCACCTGCTTCTACCAGCACCCAACCCATACTaGAACACCCAACATCCCTTGAAAGAACATAAGCAC | + |
|
Preference number: 3 (lower is better) Translates to: SQHLLLPAPNPY*NTQHPLKEHKH Trigger: GTGCTTATGTTCTTTCAAGGGATGTTGGGTGTTTCAGTATGGGTTGGGTGCTGGTAGAAGCAGGTGCTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | GGGCTAAACCATCTGAATGCCAAGCTTCAAGTCTCTTaGCAACCTATCTGGGCCCCAAAAGCCAGAAATGAC | + |
|
Preference number: 3 (lower is better) Translates to: GLNHLNAKLQVS*QPIWAPKARND Trigger: GTCATTTCTGGCTTTTGGGGCCCAGATAGGTTGGCAAGAGACTTGAAGCTTGGCATTCAGATGGTTTAGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 72 bp | GACCAGAACCAGAAAGTCCATCAGACCTGTTCAGTGTaGGGTAAGTCTCCCCTGAGACTACTGTGTTTACTG | + |
|
Preference number: 3 (lower is better) Translates to: DQNQKVHQTCSV*GKSPLRLLCLL Trigger: CAGTAAACACAGTAGTCTCAGGGGAGACTTACCCCACACTGAACAGGTCTGATGGACTTTCTGGTTCTGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | GCTCATGAGAACTATGTCCACATGCAGGCAGAGAAATaGCAGCCAAAACAGCATACCTTTGCAGCACTCCAA | + |
|
Preference number: 3 (lower is better) Translates to: AHENYVHMQAEK*QPKQHTFAALQ Trigger: TTGGAGTGCTGCAAAGGTATGCTGTTTTGGCTGTCATTTCTCTGCCTGCATGTGGACATAGTTCTCATGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | TCAGAAAGGAAGCCTGGCAGGCGTGCTAGACAAGCCTaGCTATACGGTAAGATCCTACTTCAAAAGAAAAGA | + |
|
Preference number: 3 (lower is better) Translates to: SERKPGRRARQA*LYGKILLQKKR Trigger: TCTTTTCTTTTGAAGTAGGATCTTACCGTATAGGCAGGCTTGTCTAGCACGCCTGCCAGGCTTCCTTTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | CGAGAGGAAAAGGCCAGAGTTAAACAGCTGAGCTCTTaGTGCCAGGGTTTGATACGACTTCACATAATCTCA | + |
|
Preference number: 3 (lower is better) Translates to: REEKARVKQLSS*CQGLIRLHIIS Trigger: TGAGATTATGTGAAGTCGTATCAAACCCTGGCAGCAAGAGCTCAGCTGTTTAACTCTGGCCTTTTCCTCTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 72 bp | AGTTACATAGAAATACTGCGAGATCCCAGCTTTTACTaGGGCAGTTTCTGGTACGCAGCCGTGGAAACTGAT | + |
|
Preference number: 3 (lower is better) Translates to: SYIEILRDPSFY*GSFWYAAVETD Trigger: ATCAGTTTCCACGGCTGCGTACCAGAAACTGCCCCAGTAAAAGCTGGGATCTCGCAGTATTTCTATGTAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | TCCATCAGACCTGTTCAGTGTGGGGTAAGTCTCCCCTaGGACTACTGTGTTTACTGTATTGAAGATTGCTCT | + |
|
Preference number: 3 (lower is better) Translates to: SIRPVQCGVSLP*DYCVYCIEDCS Trigger: AGAGCAATCTTCAATACAGTAAACACAGTAGTCTCAGGGGAGACTTACCCCACACTGAACAGGTCTGATGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | CTGCTTTCAGTGTGCCTACAATTAACCTGCATATTTTaGCCAGATGCAGATTTGCACTCAGCGTATCTGCGG | + |
|
Preference number: 3 (lower is better) Translates to: LLSVCLQLTCIF*PDADLHSAYLR Trigger: CCGCAGATACGCTGAGTGCAAATCTGCATCTGGTCAAAATATGCAGGTTAATTGTAGGCACACTGAAAGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | AACCTATCTGGGCCCCAAAAGCCAGAAATGACAGGATaGTATCACAGCCTGCAATGTGTCTTCTTAACTAAG | + |
|
Preference number: 3 (lower is better) Translates to: NLSGPQKPEMTG*YHSLQCVFLTK Trigger: CTTAGTTAAGAAGACACATTGCAGGCTGTGATAGCATCCTGTCATTTCTGGCTTTTGGGGCCCAGATAGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | AGTGTGCCTACAATTAACCTGCATATTTTGACCAGATaGAGATTTGCACTCAGCGTATCTGCGGTGACGACA | + |
|
Preference number: 3 (lower is better) Translates to: SVPTINLHILTR*RFALSVSAVTT Trigger: TGTCGTCACCGCAGATACGCTGAGTGCAAATCTGCATCTGGTCAAAATATGCAGGTTAATTGTAGGCACACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR GCA 72 bp | GCAGGCAGAGAAATGACAGCCAAAACAGCATACCTTTaGAGCACTCCAAAGTTTAAAGATGCTCAGAACAGG | + |
|
Preference number: 3 (lower is better) Translates to: AGREMTAKTAYL*STPKFKDAQNR Trigger: CCTGTTCTGAGCATCTTTAAACTTTGGAGTGCTGCAAAGGTATGCTGTTTTGGCTGTCATTTCTCTGCCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | GGTAAGTCTCCCCTGAGACTACTGTGTTTACTGTATTaGAGATTGCTCTATTCAGTCAGAACTGGACTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GKSPLRLLCLLY*RLLYSVRTGLQ Trigger: TTGCAGTCCAGTTCTGACTGAATAGAGCAATCTTCAATACAGTAAACACAGTAGTCTCAGGGGAGACTTACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR TCA 72 bp | GGTGGGCCTGAGAGTCTGGGTTTTGCTCAAAGTAGATaGTATGAAGTAGTCAGCAAAAGACTATATCAGATA | + |
|
Preference number: 3 (lower is better) Translates to: GGPESLGFAQSR*YEVVSKRLYQI Trigger: TATCTGATATAGTCTTTTGCTGACTACTTCATATCATCTACTTTGAGCAAAACCCAGACTCTCAGGCCCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 72 bp | TTCAGTCAGAACTGGACTGCAACATCCTATCTTATGTaGACCAAGAGCAATCTTGGCATATCCTTCTTTCTA | + |
|
Preference number: 3 (lower is better) Translates to: FSQNWTATSYLM*TKSNLGISFFL Trigger: TAGAAAGAAGGATATGCCAAGATTGCTCTTGGTCCACATAAGATAGGATGTTGCAGTCCAGTTCTGACTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 72 bp | GAAATTGTCTCAAATCCAGGAACAAAAACACTAAGCTaGAGATGCAGCCAAAAAGCTGAGACAGGTAGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: EIVSNPGTKTLS*RCSQKAETGRK Trigger: CTTTCTACCTGTCTCAGCTTTTTGGCTGCATCTCCAGCTTAGTGTTTTTGTTCCTGGATTTGAGACAATTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CCA 72 bp | TTTACTGTATTGAAGATTGCTCTATTCAGTCAGAACTaGACTGCAACATCCTATCTTATGTGGACCAAGAGC | + |
|
Preference number: 3 (lower is better) Translates to: FTVLKIALFSQN*TATSYLMWTKS Trigger: GCTCTTGGTCCACATAAGATAGGATGTTGCAGTCCAGTTCTGACTGAATAGAGCAATCTTCAATACAGTAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR TCA 90 bp | ACCACTCCTACAGAGGAAGCAGCTACCAACCTCCCCATAGGAGCTCTCCCCAGCGAGACGGTGGTGATCTaGAGACCAGGACACAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TTPTEEAATNLPIGALPSETVVI*RPGHKA Trigger: TGCTTTGTGTCCTGGTCTTCAGATCACCACCGTCTC...GCTGGGGAGAGCTCCTATGGGGAGGTTGGTAGCTGCTTCCTCTGTAGGAGTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR GCA 90 bp | CTGGCAACCAAGAAATCTCAAGGGCCATTAGACACCAGGACACCAGGATCAGGACCCCTCGAGGTGACCTaGAATGGCAGGTCAGCACCA | + |
|
Preference number: 4 (lower is better) Translates to: LATKKSQGPLDTRTPGSGPLEVT*NGRSAP Trigger: TGGTGCTGACCTGCCATTGCAGGTCACCTCGAGGGG...TCCTGATCCTGGTGTCCTGGTGTCTAATGGCCCTTGAGATTTCTTGGTTGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR GCA 90 bp | ACTTTATTAAGCAGACTCCCAACTCCCAGCACCTGCTTCTACCAGCACCCAACCGAAGGCCAACAGCTCTaGCGAATCCTGGCAGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: TLLSRLPTPSTCFYQHPTEGQQL*RILAAI Trigger: GATGGCTGCCAGGATTCGGCAGAGCTGTTGGCCTTC...GGTTGGGTGCTGGTAGAAGCAGGTGCTGGGAGTTGGGAGTCTGCTTAATAAAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR GCA 90 bp | CTGGCAACCAAGAAATCTCAAGGGCCATTAGACACCAGGACACCAGGATCAGGATGCGCATGGAACACATaGTTCTGCCTCTGCAGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: LATKKSQGPLDTRTPGSGCAWNT*FCLCRR Trigger: GCGCCTGCAGAGGCAGAAGCATGTGTTCCATGCGCA...TCCTGATCCTGGTGTCCTGGTGTCTAATGGCCCTTGAGATTTCTTGGTTGCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR GCA 90 bp | AGACAATGTCATCTTGCCAGGGTGGGCCTGAGAGTCTGGGTTTTGCTCAAAGTAGTGGACAGGGGCAGATaGTCAGACTCCCCTCGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: RQCHLARVGLRVWVLLKVVDRGR*SDSPRG Trigger: ACCTCGAGGGGAGTCTGAGCATCTGCCCCTGTCCAC...TACTTTGAGCAAAACCCAGACTCTCAGGCCCACCCTGGCAAGATGACATTGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR TCA 90 bp | ACCACTCCTACAGAGGAAGCAGCTACCAACCTCCCCATAGGAGCTCTCCCCAGCGAAAAGTGGTATAGATaGGACGGTGGTGATCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TTPTEEAATNLPIGALPSEKWYR*DGGDLK Trigger: CTTCAGATCACCACCGTCTCATCTATACCACTTTTC...GCTGGGGAGAGCTCCTATGGGGAGGTTGGTAGCTGCTTCCTCTGTAGGAGTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR TCA 90 bp | CTCCTAACACCTTCACTAAATATCTCATCTGGACCACTGGCAACCTGGTCTCATCATCTGTCCCGCTCGTaGGCTGCAAGCGTGCGCATG | + |
|
Preference number: 4 (lower is better) Translates to: LLTPSLNISSGPLATWSHHLSRS*AASVRM Trigger: CATGCGCACGCTTGCAGCTCACGAGCGGGACAGATG...ATGAGACCAGGTTGCCAGTGGTCCAGATGAGATATTTAGTGAAGGTGTTAGGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | ACTTTATTAAGCAGACTCCCAACTCCCAGCACCTGCTTCTACCAGCACCCAACCCTGCAAGCGTGCGCATaGAACACATGCTTCTGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: TLLSRLPTPSTCFYQHPTLQACA*NTCFCL Trigger: GAGGCAGAAGCATGTGTTCCATGCGCACGCTTGCAG...GGTTGGGTGCTGGTAGAAGCAGGTGCTGGGAGTTGGGAGTCTGCTTAATAAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | ACTTTATTAAGCAGACTCCCAACTCCCAGCACCTGCTTCTACCAGCACCCAACCCACAGGTGGAAGCCATaGCCAACAGGTGGCACATCA | + |
|
Preference number: 4 (lower is better) Translates to: TLLSRLPTPSTCFYQHPTHRWKP*PTGGTS Trigger: TGATGTGCCACCTGTTGGCCATGGCTTCCACCTGTG...GGTTGGGTGCTGGTAGAAGCAGGTGCTGGGAGTTGGGAGTCTGCTTAATAAAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CAA 72 bp | ATATCCTTCTTTCTAAGGACACACACTGAGGATGCCTaGGGCCCCATTCAGCAGCCAGGAGGGACACTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: ISFFLRTHTEDA*GPIQQPGGTLN Trigger: GTTCAGTGTCCCTCCTGGCTGCTGAATGGGGCCCAAGGCATCCTCAGTGTGTGTCCTTAGAAAGAAGGATAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | CAGCCAGCCACTTCTGACTCTAATACCCTTGCAGCTCAAGCCACAAAGTTCCCTGTGACTGTGAGTGGTTaGCAGATGAGGCACATGAGG | + |
|
Preference number: 4 (lower is better) Translates to: QPATSDSNTLAAQATKFPVTVSG*QMRHMR Trigger: CCTCATGTGCCTCATCTGCCAACCACTCACAGTCAC...AGGGAACTTTGTGGCTTGAGCTGCAAGGGTATTAGAGTCAGAAGTGGCTGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | CCTGACTCAGAGATCTCTCAGAAGCAAAGGGCTAAACCATCTGAATGCCAAGCTGCAGGGATGGCTTCCTaGTACCAGTCCTCCAGAGTG | + |
|
Preference number: 4 (lower is better) Translates to: PDSEISQKQRAKPSECQAAGMAS*YQSSRV Trigger: CACTCTGGAGGACTGGTACCAGGAAGCCATCCCTGC...AGCTTGGCATTCAGATGGTTTAGCCCTTTGCTTCTGAGAGATCTCTGAGTCAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | CAGCCAGCCACTTCTGACTCTAATACCCTTGCAGCTCAAGCCACAAAGTTCCCTGTAGGTGACTGTGAGTaGTTGGCAGATGAGGCACAT | + |
|
Preference number: 4 (lower is better) Translates to: QPATSDSNTLAAQATKFPVGDCE*LADEAH Trigger: ATGTGCCTCATCTGCCAACCACTCACAGTCACCTAC...AGGGAACTTTGTGGCTTGAGCTGCAAGGGTATTAGAGTCAGAAGTGGCTGGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR TCA 90 bp | CCTGACTCAGAGATCTCTCAGAAGCAAAGGGCTAAACCATCTGAATGCCAAGCTTGTAGCAGACCAGGATaGAGGCTAGAGGGATGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: PDSEISQKQRAKPSECQACSRPG*RLEGCS Trigger: ACTGCATCCCTCTAGCCTTCATCCTGGTCTGCTACA...AGCTTGGCATTCAGATGGTTTAGCCCTTTGCTTCTGAGAGATCTCTGAGTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CAA 72 bp | GCCAGAGTTAAACAGCTGAGCTCTTGCTGCCAGGGTTaGATACGACTTCACATAATCTCAGAAATCCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: ARVKQLSSCCQG*IRLHIISEIPG Trigger: GCCTGGGATTTCTGAGATTATGTGAAGTCGTATCAAACCCTGGCAGCAAGAGCTCAGCTGTTTAACTCTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR GCA 90 bp | ACTGTTCACAGTACAGTTTTAAGTGAAACGCAGCAGAATGCAAAGGGCGGGCTCAGAGTGTTGAACACATaGAGGGGTAGCCAGAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: TVHSTVLSETQQNAKGGLRVLNT*RGSQRT Trigger: AGTTCTCTGGCTACCCCTGCATGTGTTCAACACTCT...GAGCCCGCCCTTTGCATTCTGCTGCGTTTCACTTAAAACTGTACTGTGAACAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | CTCCTAACACCTTCACTAAATATCTCATCTGGACCACTGGCAACCTGGTCTCATGGACCAGTGAGAGGATaGAGACTGTCACTGACATAC | + |
|
Preference number: 4 (lower is better) Translates to: LLTPSLNISSGPLATWSHGPVRG*RLSLTY Trigger: GTATGTCAGTGACAGTCTCCATCCTCTCACTGGTCC...ATGAGACCAGGTTGCCAGTGGTCCAGATGAGATATTTAGTGAAGGTGTTAGGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR TCA 90 bp | CTGGCAACCAAGAAATCTCAAGGGCCATTAGACACCAGGACACCAGGATCAGGACTGACATACACTGGATaGAAGTTAACATCTTGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: LATKKSQGPLDTRTPGSGLTYTG*KLTSCK Trigger: TTTGCAAGATGTTAACTTTCATCCAGTGTATGTCAG...TCCTGATCCTGGTGTCCTGGTGTCTAATGGCCCTTGAGATTTCTTGGTTGCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| 3UTR CAA 72 bp | CCTGCTTTCAGTGTGCCTACAATTAACCTGCATATTTaGACCAGATGCAGATTTGCACTCAGCGTATCTGCG | + |
|
Preference number: 4 (lower is better) Translates to: PAFSVPTINLHI*TRCRFALSVSA Trigger: CGCAGATACGCTGAGTGCAAATCTGCATCTGGTCAAAATATGCAGGTTAATTGTAGGCACACTGAAAGCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR TCA 90 bp | CATAGCCCGTTCGTATTGTCCCTGTTCTTTTCAGCAAGCACTTTATTAAGCAGAAGAGGGATGCAGTACTaGAAGAGCAGCAGAAAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: HSPFVLSLFFSASTLLSRRGMQY*KSSRKV Trigger: CACTTTTCTGCTGCTCTTTCAGTACTGCATCCCTCT...TCTGCTTAATAAAGTGCTTGCTGAAAAGAACAGGGACAATACGAACGGGCTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | ACTGTTCACAGTACAGTTTTAAGTGAAACGCAGCAGAATGCAAAGGGCGGGCTCGTCACTGACATACACTaGATGAAAGTTAACATCTTG | + |
|
Preference number: 4 (lower is better) Translates to: TVHSTVLSETQQNAKGGLVTDIH*MKVNIL Trigger: CAAGATGTTAACTTTCATCCAGTGTATGTCAGTGAC...GAGCCCGCCCTTTGCATTCTGCTGCGTTTCACTTAAAACTGTACTGTGAACAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CCA 90 bp | CTCCTAACACCTTCACTAAATATCTCATCTGGACCACTGGCAACCTGGTCTCATTTTCCTTTTGTCTTGTaGTCACAAATATCAAGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LLTPSLNISSGPLATWSHFPFVL*SQISSR Trigger: TCTGCTTGATATTTGTGACCACAAGACAAAAGGAAA...ATGAGACCAGGTTGCCAGTGGTCCAGATGAGATATTTAGTGAAGGTGTTAGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS TCA 90 bp | CATGGCAAGCAGGGATGGCTTCCTGGTACCAGTCCTCCAGAGTGTTaGACACATGCAGGGGTAGCCAGAGAACTGCAAAGGCAGTCACCA | + |
|
Preference number: 5 (lower is better) Translates to: HGKQGWLPGTSPPEC*THAGVARELQRQSP Trigger: TGGTGACTGCCTTTGCAGTTCTCTGGCTACCCCTGCATGTGTTCAACACTCTGGAGGACTGGTACCAGGAAGCCATCCCTGCTTGCCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS CCA 90 bp | AATCCTGGCAGCCATCAGAGAAATTATAGGGGGAATCCAATGGATTaGTCCCATTCTTACCCTGTAGGGATCCTGGGAAGAGAGGGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: NPGSHQRNYRGNPMD*SHSYPVGILGREGP Trigger: TGGCCCCTCTCTTCCCAGGATCCCTACAGGGTAAGAATGGGACCAATCCATTGGATTCCCCCTATAATTTCTCTGATGGCTGCCAGGATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CAA 90 bp | CTTTTCAGCAAGCACTTTATTAAGCAGACTCCCAACTCCCAGCACCTGCTTCTATCATTCAGGGTGCTGTaGGCCAGGAACGGCAAGGAA | + |
|
Preference number: 5 (lower is better) Translates to: LFSKHFIKQTPNSQHLLLSFRVL*ARNGKE Trigger: TTCCTTGCCGTTCCTGGCCAACAGCACCCTGAATGA...TAGAAGCAGGTGCTGGGAGTTGGGAGTCTGCTTAATAAAGTGCTTGCTGAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CAA 90 bp | TTTTCAGCAAGCACTTTATTAAGCAGACTCCCAACTCCCAGCACCTGCTTCTACGTCATGAGCATGCTGTaGATCCGCTTCATCTGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: FSASTLLSRLPTPSTCFYVMSML*IRFICP Trigger: GGGACAGATGAAGCGGATCAACAGCATGCTCATGAC...GTAGAAGCAGGTGCTGGGAGTTGGGAGTCTGCTTAATAAAGTGCTTGCTGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CAA 90 bp | GAGAGTCAGCCAGCCACTTCTGACTCTAATACCCTTGCAGCTCAAGCCACAAAGAGTAGGTTGGTCACATaGGACTTTTCCTTTTGTCTT | + |
|
Preference number: 5 (lower is better) Translates to: ESQPATSDSNTLAAQATKSRLVT*DFSFCL Trigger: AAGACAAAAGGAAAAGTCCAATGTGACCAACCTACT...CTTTGTGGCTTGAGCTGCAAGGGTATTAGAGTCAGAAGTGGCTGGCTGACTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CAA 90 bp | CTGGCAACCAAGAAATCTCAAGGGCCATTAGACACCAGGACACCAGGATCAGGAATGAAAGTTAACATCTaGCAAAGGACTTCACCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LATKKSQGPLDTRTPGSGMKVNI*QRTSPK Trigger: CTTTGGTGAAGTCCTTTGCAAGATGTTAACTTTCAT...TCCTGATCCTGGTGTCCTGGTGTCTAATGGCCCTTGAGATTTCTTGGTTGCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS-3UTR CAA 90 bp | CATAGCCCGTTCGTATTGTCCCTGTTCTTTTCAGCAAGCACTTTATTAAGCAGAACTTTTCCTTTTGTCTaGTGGTCACAAATATCAAGC | + |
|
Preference number: 5 (lower is better) Translates to: HSPFVLSLFFSASTLLSRTFPFV*WSQISS Trigger: GCTTGATATTTGTGACCACAAGACAAAAGGAAAAGT...TCTGCTTAATAAAGTGCTTGCTGAAAAGAACAGGGACAATACGAACGGGCTATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS GCA 72 bp | ATCCGCTTCATCTGTCCCGCTCGTGAGCTGCAAGCGTaGGCATGGAACACATGCTTCTGCCTCTGCAGGCGC | + |
|
Preference number: 6 (lower is better) Translates to: IRFICPARELQA*AWNTCFCLCRR Trigger: GCGCCTGCAGAGGCAGAAGCATGTGTTCCATGCGCACGCTTGCAGCTCACGAGCGGGACAGATGAAGCGGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS CAA 90 bp | AGCCAGAGAACTGCAAAGGCAGTCACCATTGTCATGAGCATGCTGTaGATCCGCTTCATCTGTCCCGCTCGTGAGCTGCAAGCGTGCGCA | + |
|
Preference number: 6 (lower is better) Translates to: SQRTAKAVTIVMSML*IRFICPARELQACA Trigger: TGCGCACGCTTGCAGCTCACGAGCGGGACAGATGAAGCGGATCAACAGCATGCTCATGACAATGGTGACTGCCTTTGCAGTTCTCTGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS TCA 72 bp | TGGAAGCCATGGCCAACAGGTGGCACATCAAGAAGATaGGGTTGCCATGGCAAGCAGGGATGGCTTCCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: WKPWPTGGTSRR*GCHGKQGWLPG Trigger: ACCAGGAAGCCATCCCTGCTTGCCATGGCAACCTCATCTTCTTGATGTGCCACCTGTTGGCCATGGCTTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS CAA 72 bp | ACTGCAAAGGCAGTCACCATTGTCATGAGCATGCTGTaGATCCGCTTCATCTGTCCCGCTCGTGAGCTGCAA | + |
|
Preference number: 6 (lower is better) Translates to: TAKAVTIVMSML*IRFICPARELQ Trigger: TTGCAGCTCACGAGCGGGACAGATGAAGCGGATCAACAGCATGCTCATGACAATGGTGACTGCCTTTGCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS TCA 72 bp | CAGCAGAAAAGTGGTATAGATGAGACGGTGGTGATCTaGAGACCAGGACACAAAGCAGACGACCTTGTCTTC | + |
|
Preference number: 6 (lower is better) Translates to: QQKSGIDETVVI*RPGHKADDLVF Trigger: GAAGACAAGGTCGTCTGCTTTGTGTCCTGGTCTTCAGATCACCACCGTCTCATCTATACCACTTTTCTGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||
| CDS CCA 72 bp | AGCCATCAGAGAAATTATAGGGGGAATCCAATGGATTaGTCCCATTCTTACCCTGTAGGGATCCTGGGAAGA | + |
|
Preference number: 6 (lower is better) Translates to: SHQRNYRGNPMD*SHSYPVGILGR Trigger: TCTTCCCAGGATCCCTACAGGGTAAGAATGGGACCAATCCATTGGATTCCCCCTATAATTTCTCTGATGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052164.4 |
||