Pregenerated sensors for NPW (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071230Ensembl transcript IDs: ENSMUST00000095544.6
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTAAGCGGCGCAGCCCCATaGGCAGCCCGGAGGCACGAC | + |
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Preference number: 4 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLSGAAP*AARRHD Trigger: GTCGTGCCTCCGGGCTGCTCATGGGGCTGCGCCGCT...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS-3UTR GCA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTACCGCGGACTCCAGGGTaGATGGACGGGAAGCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLPRTPG*MDGKPC Trigger: GCAGGGCTTCCCGTCCATGCACCCTGGAGTCCGCGG...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS-3UTR GCA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTACGGGGACTCGCCACGTaGTTATACCAGGCGCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLRGLAT*LYQALA Trigger: CGCCAGCGCCTGGTATAAGCACGTGGCGAGTCCCCG...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS-3UTR TCA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTAGGGAAGCCCTGCAGGTaGGCTCCTGCTTCGTACCTC | + |
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Preference number: 4 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLGKPCR*APASYL Trigger: GAGGTACGAAGCAGGAGCTCACCTGCAGGGCTTCCC...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS-3UTR CCA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTAGGACTCCAGGGTGCATaGACGGGAAGCCCTGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLGLQGA*TGSPAG Trigger: ACCTGCAGGGCTTCCCGTCCATGCACCCTGGAGTCC...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS-3UTR CCA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTATGCAGGAACCATGGCTaGGCACGAAGCGTCTCTCCG | + |
|
Preference number: 4 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLCRNHG*ARSVSP Trigger: CGGAGAGACGCTTCGTGCCCAGCCATGGTTCCTGCA...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS-3UTR CCA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTATTGCTGCAGGAACCATaGCTGGGCACGAAGCGTCTC | + |
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Preference number: 4 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLLLQEP*LGTKRL Trigger: GAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAA...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS TCA 90 bp | CGCCCAGGGCACGGCGCCACTGGTAGGGCGAGCGGCGCAGCCCCATaGGCAGCCCGGAGGCACGACCCACTGTGTGATAGCGGGGACTCG | + |
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Preference number: 5 (lower is better) Translates to: RPGHGATGRASGAAP*AARRHDPLCDSGDS Trigger: CGAGTCCCCGCTATCACACAGTGGGTCGTGCCTCCGGGCTGCTCATGGGGCTGCGCCGCTCGCCCTACCAGTGGCGCCGTGCCCTGGGCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS CCA 90 bp | TCCGGTTGGCGGACTCCCTCCAGGTCCCGCGGACTCCAGGGTGCATaGACGGGAAGCCCTGCAGGTGAGCTCCTGCTTCGTACCTCCCAC | + |
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Preference number: 5 (lower is better) Translates to: SGWRTPSRSRGLQGA*TGSPAGELLLRTSH Trigger: GTGGGAGGTACGAAGCAGGAGCTCACCTGCAGGGCTTCCCGTCCATGCACCCTGGAGTCCGCGGGACCTGGAGGGAGTCCGCCAACCGGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS GCA 90 bp | GCGGACTCCAGGGTGCATGGACGGGAAGCCCTGCAGGTGAGCTCCTaGTTCGTACCTCCCACAGCTCCTGCCCTGAGGAAGGAAGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: ADSRVHGREALQVSS*FVPPTAPALRKEAG Trigger: TCCTGCTTCCTTCCTCAGGGCAGGAGCTGTGGGAGGTACGAAGCAGGAGCTCACCTGCAGGGCTTCCCGTCCATGCACCCTGGAGTCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS TCA 90 bp | GTCTCTCCGAAGGCTCTAGCAGCGGGCTCCTCTGAGATCCAGGAGTaGAGGCTTAGCGACTGCTCCGGTTGGCGGACTCCCTCCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: VSPKALAAGSSEIQE*RLSDCSGWRTPSRS Trigger: GGACCTGGAGGGAGTCCGCCAACCGGAGCAGTCGCTAAGCCTTCACTCCTGGATCTCAGAGGAGCCCGCTGCTAGAGCCTTCGGAGAGAC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS GCA 90 bp | GGGCGCCATCGGTTCTTGGGCCTGACAGGATCGGCAAAGATGACTTaGTGCAGGAACCATGGCTGGGCACGAAGCGTCTCTCCGAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: GRHRFLGLTGSAKMT*CRNHGWARSVSPKA Trigger: AGCCTTCGGAGAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCCTGTCAGGCCCAAGAACCGATGGCGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS CCA 90 bp | GGCCTGACAGGATCGGCAAAGATGACTTGCTGCAGGAACCATGGCTaGGCACGAAGCGTCTCTCCGAAGGCTCTAGCAGCGGGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: GLTGSAKMTCCRNHG*ARSVSPKALAAGSS Trigger: AGAGGAGCCCGCTGCTAGAGCCTTCGGAGAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCCTGTCAGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS GCA 90 bp | CGCCATCGGTTCTTGGGCCTGACAGGATCGGCAAAGATGACTTGCTaGAGGAACCATGGCTGGGCACGAAGCGTCTCTCCGAAGGCTCTA | + |
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Preference number: 5 (lower is better) Translates to: RHRFLGLTGSAKMTC*RNHGWARSVSPKAL Trigger: TAGAGCCTTCGGAGAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCCTGTCAGGCCCAAGAACCGATGGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS-3UTR CAA 90 bp | TTTATTGACCAGACCACGAGGCCTGACTGGAGCTTCAAGCTGTGCTCCTGCCTAGGGCGCCATCGGTTCTaGGGCCTGACAGGATCGGCA | + |
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Preference number: 5 (lower is better) Translates to: FIDQTTRPDWSFKLCSCLGRHRF*GLTGSA Trigger: TGCCGATCCTGTCAGGCCCAAGAACCGATGGCGCCC...TAGGCAGGAGCACAGCTTGAAGCTCCAGTCAGGCCTCGTGGTCTGGTCAATAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS TCA 72 bp | CACGGCGCCACTGGTAGGGCGAGCGGCGCAGCCCCATaGGCAGCCCGGAGGCACGACCCACTGTGTGATAGC | + |
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Preference number: 6 (lower is better) Translates to: HGATGRASGAAP*AARRHDPLCDS Trigger: GCTATCACACAGTGGGTCGTGCCTCCGGGCTGCTCATGGGGCTGCGCCGCTCGCCCTACCAGTGGCGCCGTG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS GCA 72 bp | GCAGGTGAGCTCCTGCTTCGTACCTCCCACAGCTCCTaGCCTGAGGAAGGAAGCAGGAGAGCGCCGCGGGCG | + |
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Preference number: 6 (lower is better) Translates to: AGELLLRTSHSS*PEEGSRRAPRA Trigger: CGCCCGCGGCGCTCTCCTGCTTCCTTCCTCAGGGCAGGAGCTGTGGGAGGTACGAAGCAGGAGCTCACCTGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS CCA 72 bp | CGGACTCCCTCCAGGTCCCGCGGACTCCAGGGTGCATaGACGGGAAGCCCTGCAGGTGAGCTCCTGCTTCGT | + |
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Preference number: 6 (lower is better) Translates to: RTPSRSRGLQGA*TGSPAGELLLR Trigger: ACGAAGCAGGAGCTCACCTGCAGGGCTTCCCGTCCATGCACCCTGGAGTCCGCGGGACCTGGAGGGAGTCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS TCA 72 bp | CGGACTCCAGGGTGCATGGACGGGAAGCCCTGCAGGTaGGCTCCTGCTTCGTACCTCCCACAGCTCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: RTPGCMDGKPCR*APASYLPQLLP Trigger: GGGCAGGAGCTGTGGGAGGTACGAAGCAGGAGCTCACCTGCAGGGCTTCCCGTCCATGCACCCTGGAGTCCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS GCA 72 bp | AGGGTGCATGGACGGGAAGCCCTGCAGGTGAGCTCCTaGTTCGTACCTCCCACAGCTCCTGCCCTGAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: RVHGREALQVSS*FVPPTAPALRK Trigger: CTTCCTCAGGGCAGGAGCTGTGGGAGGTACGAAGCAGGAGCTCACCTGCAGGGCTTCCCGTCCATGCACCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS CCA 72 bp | GATAGCGGGGACTCGCCACGTGCTTATACCAGGCGCTaGCGGGCAGCGGTAGCAAGAGCAGAAGCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: DSGDSPRAYTRR*RAAVARAEAAA Trigger: TGCTGCTGCTTCTGCTCTTGCTACCGCTGCCCGCCAGCGCCTGGTATAAGCACGTGGCGAGTCCCCGCTATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS CAA 90 bp | GGGGCGCCATCGGTTCTTGGGCCTGACAGGATCGGCAAAGATGACTaGCTGCAGGAACCATGGCTGGGCACGAAGCGTCTCTCCGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: GAPSVLGPDRIGKDD*LQEPWLGTKRLSEG Trigger: GCCTTCGGAGAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCCTGTCAGGCCCAAGAACCGATGGCGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS TCA 72 bp | AAGGCTCTAGCAGCGGGCTCCTCTGAGATCCAGGAGTaGAGGCTTAGCGACTGCTCCGGTTGGCGGACTCCC | + |
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Preference number: 6 (lower is better) Translates to: KALAAGSSEIQE*RLSDCSGWRTP Trigger: GGGAGTCCGCCAACCGGAGCAGTCGCTAAGCCTTCACTCCTGGATCTCAGAGGAGCCCGCTGCTAGAGCCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS CCA 72 bp | GGATCGGCAAAGATGACTTGCTGCAGGAACCATGGCTaGGCACGAAGCGTCTCTCCGAAGGCTCTAGCAGCG | + |
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Preference number: 6 (lower is better) Translates to: GSAKMTCCRNHG*ARSVSPKALAA Trigger: CGCTGCTAGAGCCTTCGGAGAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS GCA 72 bp | TTCTTGGGCCTGACAGGATCGGCAAAGATGACTTGCTaGAGGAACCATGGCTGGGCACGAAGCGTCTCTCCG | + |
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Preference number: 6 (lower is better) Translates to: FLGLTGSAKMTC*RNHGWARSVSP Trigger: CGGAGAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCCTGTCAGGCCCAAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS GCA 72 bp | CGGTTCTTGGGCCTGACAGGATCGGCAAAGATGACTTaGTGCAGGAACCATGGCTGGGCACGAAGCGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: RFLGLTGSAKMT*CRNHGWARSVS Trigger: AGAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCCTGTCAGGCCCAAGAACCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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| CDS CAA 72 bp | TCGGTTCTTGGGCCTGACAGGATCGGCAAAGATGACTaGCTGCAGGAACCATGGCTGGGCACGAAGCGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SVLGPDRIGKDD*LQEPWLGTKRL Trigger: GAGACGCTTCGTGCCCAGCCATGGTTCCTGCAGCAAGTCATCTTTGCCGATCCTGTCAGGCCCAAGAACCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095544.6 |
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