RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NPTXR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022421

Ensembl transcript IDs: ENSMUST00000023057.10, ENSMUST00000175858.10

Found 247 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTaGGTCACGTCTCGGGCTGAGTGGCCATGGAGAGCACAGACGGAC +
Preference number: 1 (lower is better)
Translates to: GESRPCFPDMGCSLS*VTSRAEWPWRAQTD
Trigger: GTCCGTCTGTGCTCTCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp CAGATCTGCAGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTGACATaGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTGGCCAT +
Preference number: 1 (lower is better)
Translates to: QICSPEASLGHASLT*AAASPASRLGLSGH
Trigger: ATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp CCTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTaGCCATGGAGAGCACAGACGGACAAAAGTGGTGGGTGGGGTAGG +
Preference number: 1 (lower is better)
Translates to: PDMGCSLSCVTSRAE*PWRAQTDKSGGWGR
Trigger: CCTACCCCACCCACCACTTTTGTCCGTCTGTGCTCTCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp CAGGCTAGAGTGACCCAGCAGGTCCTGTCTCAGGCATGGAGGGGGTaGGGTGGACAACCCTGCTGGTGGGCAAAGTTGCCAGTGGGTACA +
Preference number: 1 (lower is better)
Translates to: QARVTQQVLSQAWRG*GGQPCWWAKLPVGT
Trigger: TGTACCCACTGGCAACTTTGCCCACCAGCAGGGTTGTCCACCCCACCCCCTCCATGCCTGAGACAGGACCTGCTGGGTCACTCTAGCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 90 bp TGGGGTAGAAGGGAAGGCCGGCGTGTAGACAGGCTGAGGAGGGATTaGCCCTTCAAAGTCCTGAAACTGACAGGCAATGGAGGGGCCCTG +
Preference number: 1 (lower is better)
Translates to: WGRREGRRVDRLRRD*PFKVLKLTGNGGAL
Trigger: CAGGGCCCCTCCATTGCCTGTCAGTTTCAGGACTTTGAAGGGGCAATCCCTCCTCAGCCTGTCTACACGCCGGCCTTCCCTTCTACCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 90 bp CAAAATGGAAATGCAGATCTGCAGCCCAGAGGCGAGTCTCGGCCATaGTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGG +
Preference number: 1 (lower is better)
Translates to: QNGNADLQPRGESRP*FPDMGCSLSCVTSR
Trigger: CCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATCTGCATTTCCATTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp GTGCCTCCCTGCACAGGTATAAGCAGGGCTCAAGGACAGGCAGTGTaGTTCACAGGGAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGG +
Preference number: 1 (lower is better)
Translates to: VPPCTGISRAQGQAV*FTGKSTLEGLRGPG
Trigger: CCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCCCTGTGAACCACACTGCCTGTCCTTGAGCCCTGCTTATACCTGTGCAGGGAGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp GACCCAGGGGCAACTCAGGGCCGCAGCTGTCTTGTTGGATGTGCTTaGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAG +
Preference number: 1 (lower is better)
Translates to: DPGATQGRSCLVGCA*GDSRRLSGGSTCSE
Trigger: CTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAAGCACATCCAACAAGACAGCTGCGGCCCTGAGTTGCCCCTGGGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp TGCCTCAACCCCTACATTGATGTGAGATACTGGTCCCTATCCAGGTaGCTGAGGGGACACCCATCCAGGGCAGGGCACTCTGGAGCAGTG +
Preference number: 1 (lower is better)
Translates to: CLNPYIDVRYWSLSR*LRGHPSRAGHSGAV
Trigger: CACTGCTCCAGAGTGCCCTGCCCTGGATGGGTGTCCCCTCAGCCACCTGGATAGGGACCAGTATCTCACATCAATGTAGGGGTTGAGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp CCTCGTTCCAAAGTGTCCAACCAGATGACTTCACATGCTCGCTGCTaGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCAGGGG +
Preference number: 1 (lower is better)
Translates to: PRSKVSNQMTSHARC*RLSQGRSLFSIQQG
Trigger: CCCCTGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGTGAAGTCATCTGGTTGGACACTTTGGAACGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 90 bp GACAAAAGTGGTGGGTGGGGTAGGGCAAGAGGCACCGGTGCCCAGTaGTTCACCCAACCTGCTACTGTTCCAATCCATGGGAGAGGACCA +
Preference number: 1 (lower is better)
Translates to: DKSGGWGRARGTGAQ*FTQPATVPIHGRGP
Trigger: TGGTCCTCTCCCATGGATTGGAACAGTAGCAGGTTGGGTGAATCACTGGGCACCGGTGCCTCTTGCCCTACCCCACCCACCACTTTTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 90 bp GGGGTGCTGTGCCGTGTAGTTGCTCTCAAAATGGAAATGCAGATCTaGAGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTGACATGGGCT +
Preference number: 1 (lower is better)
Translates to: GVLCRVVALKMEMQI*SPEASLGHASLTWA
Trigger: AGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATCTGCATTTCCATTTTGAGAGCAACTACACGGCACAGCACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 90 bp GGTCCTCGTTCCAAAGTGTCCAACCAGATGACTTCACATGCTCGCTaGTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCAG +
Preference number: 1 (lower is better)
Translates to: GPRSKVSNQMTSHAR*WRLSQGRSLFSIQQ
Trigger: CTGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGTGAAGTCATCTGGTTGGACACTTTGGAACGAGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp TCCATGGGAGAGGACCAACAGGGCCTTGCATCCTCTGCTGTCTGTTaGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTG +
Preference number: 1 (lower is better)
Translates to: SMGEDQQGLASSAVC*NSVCLGFSSHLLRL
Trigger: CAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGATGCAAGGCCCTGTTGGTCCTCTCCCATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp GCATCCTCCATCCTTTCCAGGGCCATGCAGAAAGAGGTGATATGGTaGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCAT +
Preference number: 1 (lower is better)
Translates to: ASSILSRAMQKEVIW*LSHQALPGKHPLIH
Trigger: ATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCATATCACCTCTTTCTGCATGGCCCTGGAAAGGATGGAGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp AACAGGGCCTTGCATCCTCTGCTGTCTGTTGGAACTCTGTCTGTCTaGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGTTGGGGTG +
Preference number: 1 (lower is better)
Translates to: NRALHPLLSVGTLSV*AFPLTSSGCQGVGV
Trigger: CACCCCAACACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGATGCAAGGCCCTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 90 bp GTCCTGGAGAAGAGAAGGACAGTCAAGGGAACTTCCAGGGTCATTTaGGCTTCCTGGCCAGACCTCAGCTCCCTCATCTACAAGCCAAGG +
Preference number: 1 (lower is better)
Translates to: VLEKRRTVKGTSRVI*ASWPDLSSLIYKPR
Trigger: CCTTGGCTTGTAGATGAGGGAGCTGAGGTCTGGCCAGGAAGCTCAAATGACCCTGGAAGTTCCCTTGACTGTCCTTCTCTTCTCCAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 90 bp GTTCACAGGGAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTaGTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTCTC +
Preference number: 1 (lower is better)
Translates to: VHREEHFGGTQRAWA*YVVLFDPRQVNGPL
Trigger: GAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCCCTGTGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp GCCTCCAAATGGAAATCGCGCTGTTCCCGGCTGGCCAATCAACACTaGGCAAGTTACTTTACCTCTCATCCTTCTCTTGTGCACCACAGG +
Preference number: 1 (lower is better)
Translates to: ASKWKSRCSRLANQH*ASYFTSHPSLVHHR
Trigger: CCTGTGGTGCACAAGAGAAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGCGCGATTTCCATTTGGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 90 bp GTGCTGGGACTAGTAGATAGGAATTCAGTTTGCAAGGGAAGGGAGTaGCCACCGGGTCCTGGAGAAGAGAAGGACAGTCAAGGGAACTTC +
Preference number: 1 (lower is better)
Translates to: VLGLVDRNSVCKGRE*PPGPGEEKDSQGNF
Trigger: GAAGTTCCCTTGACTGTCCTTCTCTTCTCCAGGACCCGGTGGTCACTCCCTTCCCTTGCAAACTGAATTCCTATCTACTAGTCCCAGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 90 bp TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTGTTCTaGTTTCCATCCCAGCATCCTCCATCCTTTCCAGGGCCATGCAGA +
Preference number: 1 (lower is better)
Translates to: SLSLSLSLSLSLSVF*FPSQHPPSFPGPCR
Trigger: TCTGCATGGCCCTGGAAAGGATGGAGGATGCTGGGATGGAAAGCAGAACACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 90 bp AGTGTGGTTCACAGGGAAGAGCACTTTGGAGGGACTCAGAGGGCCTaGGCCTGCTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGC +
Preference number: 1 (lower is better)
Translates to: SVVHREEHFGGTQRA*ACYVVLFDPRQVNG
Trigger: GCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCCCTGTGAACCACACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 90 bp GTGGGCTCCAGTGAGCAGGCAGTTTCTGCTACATCCTTCCTAAGATaGTGTCTTCCCAAGGCCTCCTCTAAATCAATAGCAAAGGCCTCT +
Preference number: 1 (lower is better)
Translates to: VGSSEQAVSATSFLR*CLPKASSKSIAKAS
Trigger: AGAGGCCTTTGCTATTGATTTAGAGGAGGCCTTGGGAAGACAGCATCTTAGGAAGGATGTAGCAGAAACTGCCTGCTCACTGGAGCCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCAGAGGCTGGGCATAGGTaGGAGACCCCTCCCTCCCTG +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPAEAGHR*ETPPSL
Trigger: CAGGGAGGGAGGGGTCTCTCACCTATGCCCAGCCTC...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GATCTGCAGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCGGACAACCCTGCTGGTaGGCAAAGTTGCCAGTGGGT +
Preference number: 2 (lower is better)
Translates to: DLQPRGESRPCFPDMGCSGQPCW*AKLPVG
Trigger: ACCCACTGGCAACTTTGCCCACCAGCAGGGTTGTCC...GCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GATCTGCAGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCCACCAGGCTCTGCCTaGGAAGCATCCCCTCATTCA +
Preference number: 2 (lower is better)
Translates to: DLQPRGESRPCFPDMGCSPPGSA*EASPHS
Trigger: TGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGG...GCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGGTGATTACAGCCCTTTaGCCTCCAGGGTTTTGGTCC +
Preference number: 2 (lower is better)
Translates to: GESRPCFPDMGCSLSCVTVITAL*PPGFWS
Trigger: GGACCAAAACCCTGGAGGCCAAAGGGCTGTAATCAC...CGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GGAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTGCTGTTATGGAGGGGGTGGGGTaGACAACCCTGCTGGTGGGC +
Preference number: 2 (lower is better)
Translates to: GRALWRDSEGLGLLCCAVMEGVG*TTLLVG
Trigger: GCCCACCAGCAGGGTTGTCCACCCCACCCCCTCCAT...AACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCCTCTGCTGTCTGTTaGAACTCTGTCTGTCTGGGC +
Preference number: 2 (lower is better)
Translates to: GESRPCFPDMGCSLSCVTSSAVC*NSVCLG
Trigger: GCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGA...CGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCACCACCAGGCTCTGCCTaGGAAGCATCCCCTCATTCA +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPAPPGSA*EASPHS
Trigger: TGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGG...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp AAGGTGGGGGAGGAGGGCAGTGGAGGGTCCTCGTTCCAAAGTGTCCAACCAGATAGGCGGGATCAGGGGTaGCAGGCAGCTGGAGTTAAG +
Preference number: 2 (lower is better)
Translates to: KVGEEGSGGSSFQSVQPDRRDQG*QAAGVK
Trigger: CTTAACTCCAGCTGCCTGCCACCCCTGATCCCGCCT...ATCTGGTTGGACACTTTGGAACGAGGACCCTCCACTGCCCTCCTCCCCCACCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCAAGCAGTGGGTGCCCATaGGGAGAAGTGGGAGGTATA +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPASSGCP*GEVGGI
Trigger: TATACCTCCCACTTCTCCTCATGGGCACCCACTGCT...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp CTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTGGCCATGGATCCTGGAAACTGAGGTaGGGCTTGAACCGACATGAA +
Preference number: 2 (lower is better)
Translates to: LTWAAASPASRLGLSGHGSWKLR*GLNRHE
Trigger: TTCATGTCGGTTCAAGCCTCACCTCAGTTTCCAGGA...TCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp AAGGTGGGGGAGGAGGGCAGTGGAGGGTCCTCGTTCCAAAGTGTCCAACCAGATTCTGGTGGGCTCCAGTaGGCAGGCAGTTTCTGCTAC +
Preference number: 2 (lower is better)
Translates to: KVGEEGSGGSSFQSVQPDSGGLQ*AGSFCY
Trigger: GTAGCAGAAACTGCCTGCTCACTGGAGCCCACCAGA...ATCTGGTTGGACACTTTGGAACGAGGACCCTCCACTGCCCTCCTCCCCCACCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp CCCGAGGTAGGCCTGGAGCATAGGGGATTTGAGGGTCAAAGGCTACCTCTACCCAGGTATAGCCAGGAGTaGGGTAGAAGGGAAGGCCGG +
Preference number: 2 (lower is better)
Translates to: PEVGLEHRGFEGQRLPLPRYSQE*GRREGR
Trigger: CCGGCCTTCCCTTCTACCCCACTCCTGGCTATACCT...GGGTAGAGGTAGCCTTTGACCCTCAAATCCCCTATGCTCCAGGCCTACCTCGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGATCTTTATACATCTCTaGCATCCCTTCTGCAGCCCG +
Preference number: 2 (lower is better)
Translates to: GESRPCFPDMGCSLSCVTIFIHL*HPFCSP
Trigger: CGGGCTGCAGAAGGGATGCCAGAGATGTATAAAGAT...CGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCAGCAAAAGGATGGGGATaGTGTGTCTGGTGGGCTCCA +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPAAKGWG*CVWWAP
Trigger: TGGAGCCCACCAGACACACCATCCCCATCCTTTTGC...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCAGGCTGCAGCCTCTCCTaGGTCACGTCTCGGGCTGAG +
Preference number: 2 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSGCSLS*VTSRAE
Trigger: CTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCC...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCAGGTATAGCCAGGAGTaGGGTAGAAGGGAAGGCCGG +
Preference number: 2 (lower is better)
Translates to: MVAKPPGSAWEASPHSLCRYSQE*GRREGR
Trigger: CCGGCCTTCCCTTCTACCCCACTCCTGGCTATACCT...GCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTGCTGTTTTGGTCCCTATCCAGGTaGCTGAGGGGACACCCATCC +
Preference number: 2 (lower is better)
Translates to: EEHFGGTQRAWACYVVLFWSLSR*LRGHPS
Trigger: GGATGGGTGTCCCCTCAGCCACCTGGATAGGGACCA...AAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCATGGCCTCCAGGGTTTTaGTCCCTAGCTGTTAGGGTA +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPAWPPGF*SLAVRV
Trigger: TACCCTAACAGCTAGGGACCAAAACCCTGGAGGCCA...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTATGGAGGGGGTGGGGTaGACAACCCTGCTGGTGGGC +
Preference number: 2 (lower is better)
Translates to: AVPGWPINTGQVTLPLILMEGVG*TTLLVG
Trigger: GCCCACCAGCAGGGTTGTCCACCCCACCCCCTCCAT...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGAGTCCTGTCTCAGGCATaGAGGGGGTGGGGTGGACAA +
Preference number: 2 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRVLSQA*RGWGGQ
Trigger: TTGTCCACCCCACCCCCTCCATGCCTGAGACAGGAC...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCACAAGGACAGGCAGTGTaGTTCACAGGGAAGAGCACT +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPAQGQAV*FTGKST
Trigger: AGTGCTCTTCCCTGTGAACCACACTGCCTGTCCTTG...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCAGCAGGACAGTGTATATaGTGGGAGAGACCAAGCCAA +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPAAGQCI*WERPSQ
Trigger: TTGGCTTGGTCTCTCCCATCATATACACTGTCCTGC...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp GGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGTTCAGGACAGGCTAGAGTaGCCCAGCAGGTCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: GTLSVWAFPLTSSGCQGVQDRLE*PSRSCL
Trigger: GAGACAGGACCTGCTGGGTCACTCTAGCCTGTCCTG...AACACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGATCAGCAGGTTCTGGGTaGAGCCTCTGCAGCTCTCTC +
Preference number: 2 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRSAGSG*SLCSSL
Trigger: GAGAGAGCTGCAGAGGCTTCACCCAGAACCTGCTGA...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCACTCACAAAAGACACTTaGCCTAGCACTGGGGCTGAT +
Preference number: 2 (lower is better)
Translates to: TCSLLAAQPGKESVLHPALTKDT*PSTGAD
Trigger: ATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAG...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGAGGACAACCCTGCTGGTaGGCAAAGTTGCCAGTGGGT +
Preference number: 2 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRGQPCW*AKLPVG
Trigger: ACCCACTGGCAACTTTGCCCACCAGCAGGGTTGTCC...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCACAGGACAGGCTAGAGTaGCCCAGCAGGTCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSQDRLE*PSRSCL
Trigger: GAGACAGGACCTGCTGGGTCACTCTAGCCTGTCCTG...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCGAAACTGACAGGCAATaGAGGGGCCCTGAACAAGGT +
Preference number: 2 (lower is better)
Translates to: MVAKPPGSAWEASPHSLCETDRQ*RGPEQG
Trigger: ACCTTGTTCAGGGCCCCTCCATTGCCTGTCAGTTTC...GCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCAACGTCTCGGGCTGAGTaGCCATGGAGAGCACAGACG +
Preference number: 2 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSTSRAE*PWRAQT
Trigger: CGTCTGTGCTCTCCATGGCCACTCAGCCCGAGACGT...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp CAACCGGTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATTGCATGCTTCCCTGACATaGGCTGCAGCCTCTCCTGCG +
Preference number: 2 (lower is better)
Translates to: QPVSSQKTLDLALGLMSLHASLT*AAASPA
Trigger: CGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATG...CAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp GAGAACCTTCTCCAGTTTTCTCTCAGGCCAAAGGTGCTGGGACTAGTAGATAGGTGCAAGGGAAGGGAGTaGCCACCGGGTCCTGGAGAA +
Preference number: 2 (lower is better)
Translates to: ENLLQFSLRPKVLGLVDRCKGRE*PPGPGE
Trigger: TTCTCCAGGACCCGGTGGTCACTCCCTTCCCTTGCA...CCTATCTACTAGTCCCAGCACCTTTGGCCTGAGAGAAAACTGGAGAAGGTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 90 bp CCAACCTGCTACTGTTCCAATCCATGGGAGAGGACCAACAGGGCCTaGCATCCTCTGCTGTCTGTTGGAACTCTGTCTGTCTGGGCTTTT +
Preference number: 2 (lower is better)
Translates to: PTCYCSNPWERTNRA*HPLLSVGTLSVWAF
Trigger: AAAAGCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGATGCAAGGCCCTGTTGGTCCTCTCCCATGGATTGGAACAGTAGCAGGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 90 bp GGCCGCAGCTGTCTTGTTGGATGTGCTTGGGGAGACAGCAGAAGATaGAGTGGGGGCTCCACATGCTCAGAGAATGTTCACAGCACAATA +
Preference number: 2 (lower is better)
Translates to: GRSCLVGCAWGDSRR*SGGSTCSENVHSTI
Trigger: TATTGTGCTGTGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAAGCACATCCAACAAGACAGCTGCGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp CAACCGGTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATTGAGCAGTGGGTGCCCATaGGGAGAAGTGGGAGGTATA +
Preference number: 2 (lower is better)
Translates to: QPVSSQKTLDLALGLMSLSSGCP*GEVGGI
Trigger: TATACCTCCCACTTCTCCTCATGGGCACCCACTGCT...CAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp GGTGTCCCCAGAAGATATTTTGGTACCCTGTGTGAAAGCACGTGTCCTCTCAAGACCCCGCAGCCCCTGTaGGTAACCCAGGAAGATAGA +
Preference number: 2 (lower is better)
Translates to: GVPRRYFGTLCESTCPLKTPQPL*VTQEDR
Trigger: TCTATCTTCCTGGGTTACTCACAGGGGCTGCGGGGT...CTTGAGAGGACACGTGCTTTCACACAGGGTACCAAAATATCTTCTGGGGACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp CTCTTGGGGAAGTTGGTAGGGACTAGGAGAAAGCGAGGCCCAGAGAGGGTAGGTATCTTTATACATCTCTaGCATCCCTTCTGCAGCCCG +
Preference number: 2 (lower is better)
Translates to: LLGKLVGTRRKRGPERVGIFIHL*HPFCSP
Trigger: CGGGCTGCAGAAGGGATGCCAGAGATGTATAAAGAT...ACCTACCCTCTCTGGGCCTCGCTTTCTCCTAGTCCCTACCAACTTCCCCAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGTTTGGCCTCCAGGGTTTTaGTCCCTAGCTGTTAGGGTA +
Preference number: 2 (lower is better)
Translates to: GTLSVWAFPLTSSGCQGVWPPGF*SLAVRV
Trigger: TACCCTAACAGCTAGGGACCAAAACCCTGGAGGCCA...AACACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTGTCCTGTCTCAGGCATaGAGGGGGTGGGGTGGACAA +
Preference number: 2 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCVLSQA*RGWGGQ
Trigger: TTGTCCACCCCACCCCCTCCATGCCTGAGACAGGAC...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 90 bp GTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATaGGTTGTTACTGGGCAACCGGGATCTCAGCAGGTTCTGGGTGAA +
Preference number: 2 (lower is better)
Translates to: VSSQKTLDLALGLMS*VVTGQPGSQQVLGE
Trigger: TTCACCCAGAACCTGCTGAGATCCCGGTTGCCCAGTAACAACCAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp GGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGTTGCAGGACAGTGTATATaGTGGGAGAGACCAAGCCAA +
Preference number: 2 (lower is better)
Translates to: GTLSVWAFPLTSSGCQGVAGQCI*WERPSQ
Trigger: TTGGCTTGGTCTCTCCCATCATATACACTGTCCTGC...AACACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGAGCATGGAAATGTGACTaGGGTGCTGTTTCTCATCAC +
Preference number: 2 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRAWKCD*GAVSHH
Trigger: GTGATGAGAAACAGCACCTCAGTCACATTTCCATGC...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTTGGGGTGGACAACCCTaGTGGTGGGCAAAGTTGCCA +
Preference number: 2 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCWGGQP*WWAKLP
Trigger: TGGCAACTTTGCCCACCAGCAGGGTTGTCCACCCCA...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTCAAGGACAGGCAGTGTaGTTCACAGGGAAGAGCACT +
Preference number: 2 (lower is better)
Translates to: AVPGWPINTGQVTLPLILQGQAV*FTGKST
Trigger: AGTGCTCTTCCCTGTGAACCACACTGCCTGTCCTTG...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCATCCTCTGCTGTCTGTTaGAACTCTGTCTGTCTGGGC +
Preference number: 2 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSSSAVC*NSVCLG
Trigger: GCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGA...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCGTTGGGGTGGGGAGGTaGCAGTTTAACCAGGGTGAC +
Preference number: 2 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGVGVGR*QFNQGD
Trigger: GTCACCCTGGTTAAACTGCCACCTCCCCACCCCAAC...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 90 bp ACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTGCTGTTaGATCCTAGACAAGTTAATGGCCCTCTCTGTGCTCTTTTCCATC +
Preference number: 2 (lower is better)
Translates to: TLEGLRGPGPAMLCC*ILDKLMALSVLFSI
Trigger: GATGGAAAAGAGCACAGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCCCCAGGTCTAAGTTCTaGATCCAGCTGTCACCCAGC +
Preference number: 2 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGPRSKF*IQLSPS
Trigger: GCTGGGTGACAGCTGGATTCAGAACTTAGACCTGGG...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp CAACACTGGGCAAGTTACTTTACCTCTCATCCTTCTCTTGTGCACCACAGGGCTTCACAGCACAATAGATaGGAGCAGGTGGGGACTTGG +
Preference number: 2 (lower is better)
Translates to: QHWASYFTSHPSLVHHRASQHNR*EQVGTW
Trigger: CCAAGTCCCCACCTGCTCTCATCTATTGTGCTGTGA...AGCCCTGTGGTGCACAAGAGAAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp GTTGGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTTCTCTCTCAGTGTTCTaGTTTCCATCCCAGCATCCT +
Preference number: 2 (lower is better)
Translates to: VGTLSVWAFPLTSSGCQGSLSVF*FPSQHP
Trigger: AGGATGCTGGGATGGAAAGCAGAACACTGAGAGAGA...ACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GAGAACCTTCTCCAGTTTTCTCTCAGGCCAAAGGTGCTGGGACTAGTAGATAGGGAAACTGACAGGCAATaGAGGGGCCCTGAACAAGGT +
Preference number: 2 (lower is better)
Translates to: ENLLQFSLRPKVLGLVDRETDRQ*RGPEQG
Trigger: ACCTTGTTCAGGGCCCCTCCATTGCCTGTCAGTTTC...CCTATCTACTAGTCCCAGCACCTTTGGCCTGAGAGAAAACTGGAGAAGGTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GAGAACCTTCTCCAGTTTTCTCTCAGGCCAAAGGTGCTGGGACTAGTAGATAGGGGAACTCTGTCTGTCTaGGCTTTTCCTCTCACCTCC +
Preference number: 2 (lower is better)
Translates to: ENLLQFSLRPKVLGLVDRGTLSV*AFPLTS
Trigger: GGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCC...CCTATCTACTAGTCCCAGCACCTTTGGCCTGAGAGAAAACTGGAGAAGGTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTTTTTGGTACCCTGTGTaGAAGCACGTGTCCTCTCAA +
Preference number: 2 (lower is better)
Translates to: AVPGWPINTGQVTLPLILFWYPV*KHVSSQ
Trigger: TTGAGAGGACACGTGCTTTCACACAGGGTACCAAAA...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTGCATGGAAATGTGACTaGGGTGCTGTTTCTCATCAC +
Preference number: 2 (lower is better)
Translates to: AVPGWPINTGQVTLPLILAWKCD*GAVSHH
Trigger: GTGATGAGAAACAGCACCTCAGTCACATTTCCATGC...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCATCTCTCTCAGTGTTCTaGTTTCCATCCCAGCATCCT +
Preference number: 2 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSSLSVF*FPSQHP
Trigger: AGGATGCTGGGATGGAAAGCAGAACACTGAGAGAGA...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCAGTGGGGGCTCCACATaGTCAGAGAATGTTCACAGC +
Preference number: 2 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGSGGST*SENVHS
Trigger: GCTGTGAACATTCTCTGAGCATGTGGAGCCCCCACT...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp GAGAACCTTCTCCAGTTTTCTCTCAGGCCAAAGGTGCTGGGACTAGTAGATAGGCTCTCAAAATGGAAATaGAGATCTGCAGCCCAGAGG +
Preference number: 2 (lower is better)
Translates to: ENLLQFSLRPKVLGLVDRLSKWK*RSAAQR
Trigger: CCTCTGGGCTGCAGATCTGCATTTCCATTTTGAGAG...CCTATCTACTAGTCCCAGCACCTTTGGCCTGAGAGAAAACTGGAGAAGGTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCCTGTCTTGTTGGATGTaGTTGGGGAGACAGCAGAAG +
Preference number: 2 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGLSCWM*LGRQQK
Trigger: CTTCTGCTGTCTCCCCAAGCACATCCAACAAGACAG...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp CAACACTGGGCAAGTTACTTTACCTCTCATCCTTCTCTTGTGCACCACAGGGCTTTAACCAGGGTGACCTaGCATGGAAATGTGACTGAG +
Preference number: 2 (lower is better)
Translates to: QHWASYFTSHPSLVHHRALTRVT*HGNVTE
Trigger: CTCAGTCACATTTCCATGCCAGGTCACCCTGGTTAA...AGCCCTGTGGTGCACAAGAGAAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTAGGGTAGGTTCTTACTaGAAGCCACACAGCAAGTCA +
Preference number: 2 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCRVGSY*KPHSKS
Trigger: TGACTTGCTGTGTGGCTTTCAGTAAGAACCTACCCT...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp GAGAACCTTCTCCAGTTTTCTCTCAGGCCAAAGGTGCTGGGACTAGTAGATAGGGTTTCTCATCACCACTaGGACAAAGCAAAAGGATGG +
Preference number: 2 (lower is better)
Translates to: ENLLQFSLRPKVLGLVDRVSHHH*DKAKGW
Trigger: CCATCCTTTTGCTTTGTCTCAGTGGTGATGAGAAAC...CCTATCTACTAGTCCCAGCACCTTTGGCCTGAGAGAAAACTGGAGAAGGTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp CGCACTCACACATACAGAGCATCTCGTGTTACTTATGTACAAAATAGGGCAAGGTCACAGCACAATAGATaGGAGCAGGTGGGGACTTGG +
Preference number: 2 (lower is better)
Translates to: RTHTYRASRVTYVQNRARSQHNR*EQVGTW
Trigger: CCAAGTCCCCACCTGCTCTCATCTATTGTGCTGTGA...CCTTGCCCTATTTTGTACATAAGTAACACGAGATGCTCTGTATGTGTGAGTGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp GGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGTTAGAGCTTACAATGGATaGTTTTTCTCAGCTCTGACA +
Preference number: 2 (lower is better)
Translates to: GTLSVWAFPLTSSGCQGVRAYNG*FFSALT
Trigger: TGTCAGAGCTGAGAAAAACCATCCATTGTAAGCTCT...AACACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR TCA 90 bp CGCACTCACACATACAGAGCATCTCGTGTTACTTATGTACAAAATAGGGCAAGGCCATACACAGAGCCTTaGCCAGGTGCCTCTGTTTTT +
Preference number: 2 (lower is better)
Translates to: RTHTYRASRVTYVQNRARPYTEP*PGASVF
Trigger: AAAAACAGAGGCACCTGGTCAAGGCTCTGTGTATGG...CCTTGCCCTATTTTGTACATAAGTAACACGAGATGCTCTGTATGTGTGAGTGCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp CAACCGGTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATTGTCCCCTCATTCATTGTaGCTCTGTTTTAGATGTTCT +
Preference number: 2 (lower is better)
Translates to: QPVSSQKTLDLALGLMSLSPHSL*LCFRCS
Trigger: AGAACATCTAAAACAGAGGCACAATGAATGAGGGGA...CAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCATCCCCTCATTCATTGTaGCTCTGTTTTAGATGTTCT +
Preference number: 2 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSSPHSL*LCFRCS
Trigger: AGAACATCTAAAACAGAGGCACAATGAATGAGGGGA...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR GCA 90 bp CAACACTGGGCAAGTTACTTTACCTCTCATCCTTCTCTTGTGCACCACAGGGCTAACAGTCTCGCTTTGTaGTGTGAGGATAAACCAGAT +
Preference number: 2 (lower is better)
Translates to: QHWASYFTSHPSLVHHRANSLAL*CEDKPD
Trigger: ATCTGGTTTATCCTCACAGCACAAAGCGAGACTGTT...AGCCCTGTGGTGCACAAGAGAAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp CGCACTCACACATACAGAGCATCTCGTGTTACTTATGTACAAAATAGGGCAAGGGTCATTGGTTGTTACTaGGCAACCGGGATCTCAGCA +
Preference number: 2 (lower is better)
Translates to: RTHTYRASRVTYVQNRARVIGCY*ATGISA
Trigger: TGCTGAGATCCCGGTTGCCCAGTAACAACCAATGAC...CCTTGCCCTATTTTGTACATAAGTAACACGAGATGCTCTGTATGTGTGAGTGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp CAACACTGGGCAAGTTACTTTACCTCTCATCCTTCTCTTGTGCACCACAGGGCTAGCAAGAGCTTACAATaGATGGTTTTTCTCAGCTCT +
Preference number: 2 (lower is better)
Translates to: QHWASYFTSHPSLVHHRASKSLQ*MVFLSS
Trigger: AGAGCTGAGAAAAACCATCCATTGTAAGCTCTTGCT...AGCCCTGTGGTGCACAAGAGAAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CCA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTAGCAAGAGCTTACAATaGATGGTTTTTCTCAGCTCT +
Preference number: 2 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCSKSLQ*MVFLSS
Trigger: AGAGCTGAGAAAAACCATCCATTGTAAGCTCTTGCT...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp CTCCCTCCCTGGCTTCACGCCCCACACCCCCACCTCTaGTCCTTCTGCACTCTGAAGGAGGTGGCGTGGACC +
Preference number: 3 (lower is better)
Translates to: LPPWLHAPHPHL*SFCTLKEVAWT
Trigger: GGTCCACGCCACCTCCTTCAGAGTGCAGAAGGAGCAGAGGTGGGGGTGTGGGGCGTGAAGCCAGGGAGGGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp AGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTGACATaGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTG +
Preference number: 3 (lower is better)
Translates to: SPEASLGHASLT*AAASPASRLGL
Trigger: CAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp CGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTaGGTCACGTCTCGGGCTGAGTGGCCATGGAGAGCA +
Preference number: 3 (lower is better)
Translates to: RPCFPDMGCSLS*VTSRAEWPWRA
Trigger: TGCTCTCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp GGGGACACCCATCCAGGGCAGGGCACTCTGGAGCAGTaGGTGCCCATGAGGAGAAGTGGGAGGTATAGCCAG +
Preference number: 3 (lower is better)
Translates to: GDTHPGQGTLEQ*VPMRRSGRYSQ
Trigger: CTGGCTATACCTCCCACTTCTCCTCATGGGCACCCACTGCTCCAGAGTGCCCTGCCCTGGATGGGTGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp GTGACCCAGCAGGTCCTGTCTCAGGCATGGAGGGGGTaGGGTGGACAACCCTGCTGGTGGGCAAAGTTGCCA +
Preference number: 3 (lower is better)
Translates to: VTQQVLSQAWRG*GGQPCWWAKLP
Trigger: TGGCAACTTTGCCCACCAGCAGGGTTGTCCACCCCACCCCCTCCATGCCTGAGACAGGACCTGCTGGGTCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp GGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTaGCCATGGAGAGCACAGACGGACAAAAGTGGTGGG +
Preference number: 3 (lower is better)
Translates to: GCSLSCVTSRAE*PWRAQTDKSGG
Trigger: CCCACCACTTTTGTCCGTCTGTGCTCTCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp CATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTaGGTGGCCATGGAGAGCACAGACGGACAAAAGTGG +
Preference number: 3 (lower is better)
Translates to: HGLQPLLRHVSG*VAMESTDGQKW
Trigger: CCACTTTTGTCCGTCTGTGCTCTCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp AATGCAGATCTGCAGCCCAGAGGCGAGTCTCGGCCATaGTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTC +
Preference number: 3 (lower is better)
Translates to: NADLQPRGESRP*FPDMGCSLSCV
Trigger: GACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATCTGCATT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp GTGCCCATGAGGAGAAGTGGGAGGTATAGCCAGGAGTaGGGTAGAAGGGAAGGCCGGCGTGTAGACAGGCTG +
Preference number: 3 (lower is better)
Translates to: VPMRRSGRYSQE*GRREGRRVDRL
Trigger: CAGCCTGTCTACACGCCGGCCTTCCCTTCTACCCCACTCCTGGCTATACCTCCCACTTCTCCTCATGGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp GGGGTGGACAACCCTGCTGGTGGGCAAAGTTGCCAGTaGGTACAGGGGGTGATTACAGCCCTTTGGCCTCCA +
Preference number: 3 (lower is better)
Translates to: GVDNPAGGQSCQ*VQGVITALWPP
Trigger: TGGAGGCCAAAGGGCTGTAATCACCCCCTGTACCCACTGGCAACTTTGCCCACCAGCAGGGTTGTCCACCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp TTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTGGCCATGGAGCATAGGGGATTaGAGGGTCAAAGGCTACCTC +
Preference number: 3 (lower is better)
Translates to: FPDMGCSLSCVTSRAEWPWSIGD*RVKGYL
Trigger: GAGGTAGCCTTTGACCCTCAAATCCCCTATGCTCCA...TGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp CTGCTGGTGGGCAAAGTTGCCAGTGGGTACAGGGGGTaGTTACAGCCCTTTGGCCTCCAGGGTTTTGGTCCC +
Preference number: 3 (lower is better)
Translates to: LLVGKVASGYRG*LQPFGLQGFGP
Trigger: GGGACCAAAACCCTGGAGGCCAAAGGGCTGTAATCACCCCCTGTACCCACTGGCAACTTTGCCCACCAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp TGTTACTGGGCAACCGGGATCTCAGCAGGTTCTGGGTaGAGCCTCTGCAGCTCTCTCCAGGGGATGGGGATG +
Preference number: 3 (lower is better)
Translates to: CYWATGISAGSG*SLCSSLQGMGM
Trigger: CATCCCCATCCCCTGGAGAGAGCTGCAGAGGCTTCACCCAGAACCTGCTGAGATCCCGGTTGCCCAGTAACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp AAGGTGGGGGAGGAGGGCAGTGGAGGGTCCTCGTTCCAAAGTGTCCAACCAGATAGGACCAACAGGGCCTaGCATCCTCTGCTGTCTGTT +
Preference number: 3 (lower is better)
Translates to: KVGEEGSGGSSFQSVQPDRTNRA*HPLLSV
Trigger: AACAGACAGCAGAGGATGCAAGGCCCTGTTGGTCCT...ATCTGGTTGGACACTTTGGAACGAGGACCCTCCACTGCCCTCCTCCCCCACCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp CCCTACATTGATGTGAGATACTGGTCCCTATCCAGGTaGCTGAGGGGACACCCATCCAGGGCAGGGCACTCT +
Preference number: 3 (lower is better)
Translates to: PYIDVRYWSLSR*LRGHPSRAGHS
Trigger: AGAGTGCCCTGCCCTGGATGGGTGTCCCCTCAGCCACCTGGATAGGGACCAGTATCTCACATCAATGTAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp GCAACTCAGGGCCGCAGCTGTCTTGTTGGATGTGCTTaGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACA +
Preference number: 3 (lower is better)
Translates to: ATQGRSCLVGCA*GDSRRLSGGST
Trigger: TGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAAGCACATCCAACAAGACAGCTGCGGCCCTGAGTTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGAGCCGCAGCTGTCTTGTaGGATGTGCTTGGGGAGACA +
Preference number: 3 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRAAAVL*DVLGET
Trigger: TGTCTCCCCAAGCACATCCAACAAGACAGCTGCGGC...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp GCCCAGTGCAGCTTAGAGTCCCCCAGGTCTAAGTTCTaGATCCAGCTGTCACCCAGCAACAACCGGTGTCCT +
Preference number: 3 (lower is better)
Translates to: AQCSLESPRSKF*IQLSPSNNRCP
Trigger: AGGACACCGGTTGTTGCTGGGTGACAGCTGGATTCAGAACTTAGACCTGGGGGACTCTAAGCTGCACTGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp AGGGAAGGCCGGCGTGTAGACAGGCTGAGGAGGGATTaGCCCTTCAAAGTCCTGAAACTGACAGGCAATGGA +
Preference number: 3 (lower is better)
Translates to: REGRRVDRLRRD*PFKVLKLTGNG
Trigger: TCCATTGCCTGTCAGTTTCAGGACTTTGAAGGGGCAATCCCTCCTCAGCCTGTCTACACGCCGGCCTTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp TCCTCGTTCCAAAGTGTCCAACCAGATGACTTCACATaGTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCT +
Preference number: 3 (lower is better)
Translates to: SSFQSVQPDDFT*SLLAAQPGKES
Trigger: AGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGTGAAGTCATCTGGTTGGACACTTTGGAACGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp GGTGATATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATGGAGCATAGGGGATTaGAGGGTCAAAGGCTACCTC +
Preference number: 3 (lower is better)
Translates to: GDMVAKPPGSAWEASPHSWSIGD*RVKGYL
Trigger: GAGGTAGCCTTTGACCCTCAAATCCCCTATGCTCCA...TGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCATATCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp CAACCGGTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATTGTGCTGGTGGGCAAAGTaGCCAGTGGGTACAGGGGGT +
Preference number: 3 (lower is better)
Translates to: QPVSSQKTLDLALGLMSLCWWAK*PVGTGG
Trigger: ACCCCCTGTACCCACTGGCAACTTTGCCCACCAGCA...CAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp GGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGTTACAGGGAAGAGCACTTaGGAGGGACTCAGAGGGCCT +
Preference number: 3 (lower is better)
Translates to: GTLSVWAFPLTSSGCQGVTGKST*EGLRGP
Trigger: AGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCCCTGT...AACACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp TGCCTCTGTTTTAGATGTTCTCAGGACAGGCTAGAGTaGCCCAGCAGGTCCTGTCTCAGGCATGGAGGGGGT +
Preference number: 3 (lower is better)
Translates to: CLCFRCSQDRLE*PSRSCLRHGGG
Trigger: ACCCCCTCCATGCCTGAGACAGGACCTGCTGGGTCACTCTAGCCTGTCCTGAGAACATCTAAAACAGAGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp TGCCGTGTAGTTGCTCTCAAAATGGAAATGCAGATCTaGAGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTG +
Preference number: 3 (lower is better)
Translates to: CRVVALKMEMQI*SPEASLGHASL
Trigger: CAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATCTGCATTTCCATTTTGAGAGCAACTACACGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp AGTTGCCAGTGGGTACAGGGGGTGATTACAGCCCTTTaGCCTCCAGGGTTTTGGTCCCTAGCTGTTAGGGTA +
Preference number: 3 (lower is better)
Translates to: SCQWVQGVITAL*PPGFWSLAVRV
Trigger: TACCCTAACAGCTAGGGACCAAAACCCTGGAGGCCAAAGGGCTGTAATCACCCCCTGTACCCACTGGCAACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp GAGGACCAACAGGGCCTTGCATCCTCTGCTGTCTGTTaGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTC +
Preference number: 3 (lower is better)
Translates to: EDQQGLASSAVC*NSVCLGFSSHL
Trigger: GAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGATGCAAGGCCCTGTTGGTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp AAAGTGTCCAACCAGATGACTTCACATGCTCGCTGCTaGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATC +
Preference number: 3 (lower is better)
Translates to: KVSNQMTSHARC*RLSQGRSLFSI
Trigger: GATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGTGAAGTCATCTGGTTGGACACTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp GATCTGCAGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCGCTATGTTGTGCTGTTaGATCCTAGACAAGTTAATG +
Preference number: 3 (lower is better)
Translates to: DLQPRGESRPCFPDMGCSAMLCC*ILDKLM
Trigger: CATTAACTTGTCTAGGATCAAACAGCACAACATAGC...GCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp CACAGGGAAGAGCACTTTGGAGGGACTCAGAGGGCCTaGGCCTGCTATGTTGTGCTGTTTGATCCTAGACAA +
Preference number: 3 (lower is better)
Translates to: HREEHFGGTQRA*ACYVVLFDPRQ
Trigger: TTGTCTAGGATCAAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCCCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp TGCACAGGTATAAGCAGGGCTCAAGGACAGGCAGTGTaGTTCACAGGGAAGAGCACTTTGGAGGGACTCAGA +
Preference number: 3 (lower is better)
Translates to: CTGISRAQGQAV*FTGKSTLEGLR
Trigger: TCTGAGTCCCTCCAAAGTGCTCTTCCCTGTGAACCACACTGCCTGTCCTTGAGCCCTGCTTATACCTGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp CCTGCTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTCTCTGTGCTCTGCTGGTGGGCAAAGTaGCCAGTGGGTACAGGGGGT +
Preference number: 3 (lower is better)
Translates to: PAMLCCLILDKLMALSVLCWWAK*PVGTGG
Trigger: ACCCCCTGTACCCACTGGCAACTTTGCCCACCAGCA...GAGCACAGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTCAGGCTGTCAAGGTGTaGGGGTGTCCCCAGAAGATA +
Preference number: 3 (lower is better)
Translates to: AVPGWPINTGQVTLPLILQAVKV*GCPQKI
Trigger: TATCTTCTGGGGACACCCCAACACCTTGACAGCCTG...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp TTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTaGTGTTTGATCCTAGACAAGTTAATGGCCCTCTCT +
Preference number: 3 (lower is better)
Translates to: LEGLRGPGPAML*CLILDKLMALS
Trigger: AGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp AGAGGTGATATGGTGGCTAAGCCACCAGGCTCTGCCTaGGAAGCATCCCCTCATTCATTGTGCCTCTGTTTT +
Preference number: 3 (lower is better)
Translates to: RGDMVAKPPGSA*EASPHSLCLCF
Trigger: AAAACAGAGGCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCATATCACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp TTGCATCCTCTGCTGTCTGTTGGAACTCTGTCTGTCTaGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGT +
Preference number: 3 (lower is better)
Translates to: LHPLLSVGTLSV*AFPLTSSGCQG
Trigger: ACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGATGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTACAGGGAAGAGCACTTaGGAGGGACTCAGAGGGCCT +
Preference number: 3 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCTGKST*EGLRGP
Trigger: AGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCCCTGT...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTAGAGCAGGTGGGGACTaGGGAAATAGAGAGGCAGCC +
Preference number: 3 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCRAGGD*GNREAA
Trigger: GGCTGCCTCTCTATTTCCCAAGTCCCCACCTGCTCT...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTAGGACCAACAGGGCCTaGCATCCTCTGCTGTCTGTT +
Preference number: 3 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCRTNRA*HPLLSV
Trigger: AACAGACAGCAGAGGATGCAAGGCCCTGTTGGTCCT...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCCTGGGGCTGATGTCATaGGTTGTTACTGGGCAACCG +
Preference number: 3 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGLGLMS*VVTGQP
Trigger: CGGTTGCCCAGTAACAACCAATGACATCAGCCCCAG...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp CGCACTCACACATACAGAGCATCTCGTGTTACTTATGTACAAAATAGGGCAAGGAGGGCCGCAGCTGTCTaGTTGGATGTGCTTGGGGAG +
Preference number: 3 (lower is better)
Translates to: RTHTYRASRVTYVQNRARRAAAV*LDVLGE
Trigger: CTCCCCAAGCACATCCAACAAGACAGCTGCGGCCCT...CCTTGCCCTATTTTGTACATAAGTAACACGAGATGCTCTGTATGTGTGAGTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp CACCCAGCAACAACCGGTGTCCTCACAAAAGACACTTaGCCTAGCACTGGGGCTGATGTCATTGGTTGTTAC +
Preference number: 3 (lower is better)
Translates to: HPATTGVLTKDT*PSTGADVIGCY
Trigger: GTAACAACCAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTGTTGCTGGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp GTCTTGTTGGATGTGCTTGGGGAGACAGCAGAAGATTaGGTGGGGGCTCCACATGCTCAGAGAATGTTCACA +
Preference number: 3 (lower is better)
Translates to: VLLDVLGETAED*VGAPHAQRMFT
Trigger: TGTGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAAGCACATCCAACAAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp TGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATaGTCAGAGAATGTTCACAGCACAATAGATGAGAGC +
Preference number: 3 (lower is better)
Translates to: WGDSRRLSGGST*SENVHSTIDES
Trigger: GCTCTCATCTATTGTGCTGTGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp CTCCACATGCTCAGAGAATGTTCACAGCACAATAGATaGGAGCAGGTGGGGACTTGGGAAATAGAGAGGCAG +
Preference number: 3 (lower is better)
Translates to: LHMLRECSQHNR*EQVGTWEIERQ
Trigger: CTGCCTCTCTATTTCCCAAGTCCCCACCTGCTCTCATCTATTGTGCTGTGAACATTCTCTGAGCATGTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR TCA 72 bp CTAGTAGATAGGAATTCAGTTTGCAAGGGAAGGGAGTaGCCACCGGGTCCTGGAGAAGAGAAGGACAGTCAA +
Preference number: 3 (lower is better)
Translates to: LVDRNSVCKGRE*PPGPGEEKDSQ
Trigger: TTGACTGTCCTTCTCTTCTCCAGGACCCGGTGGTCACTCCCTTCCCTTGCAAACTGAATTCCTATCTACTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp GAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTaGTATGTTGTGCTGTTTGATCCTAGACAAGTTAAT +
Preference number: 3 (lower is better)
Translates to: EEHFGGTQRAWA*YVVLFDPRQVN
Trigger: ATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CCA 72 bp TTCACATGTAACTGTGGTAAGATGACCCTTGGGACATaGGAGTGGCCACTCCATGCCTCACAGATAGGAGAT +
Preference number: 3 (lower is better)
Translates to: FTCNCGKMTLGT*EWPLHASQIGD
Trigger: ATCTCCTATCTGTGAGGCATGGAGTGGCCACTCCCATGTCCCAAGGGTCATCTTACCACAGTTACATGTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp CAACCGGTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATTGGCATCCCCTCATTCATaGTGCCTCTGTTTTAGATGT +
Preference number: 3 (lower is better)
Translates to: QPVSSQKTLDLALGLMSLASPHS*CLCFRC
Trigger: ACATCTAAAACAGAGGCACAATGAATGAGGGGATGC...CAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTTCTTGTTGGATGTGCTaGGGGAGACAGCAGAAGATT +
Preference number: 3 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCSCWMC*GRQQKI
Trigger: AATCTTCTGCTGTCTCCCCAAGCACATCCAACAAGA...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR GCA 72 bp AGTGAGCAGGCAGTTTCTGCTACATCCTTCCTAAGATaGTGTCTTCCCAAGGCCTCCTCTAAATCAATAGCA +
Preference number: 3 (lower is better)
Translates to: SEQAVSATSFLR*CLPKASSKSIA
Trigger: TGCTATTGATTTAGAGGAGGCCTTGGGAAGACAGCATCTTAGGAAGGATGTAGCAGAAACTGCCTGCTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR-3UTR CAA 90 bp GGTGTCCCCAGAAGATATTTTGGTACCCTGTGTGAAAGCACGTGTCCTCTCAAGGCTATGTTGTGCTGTTaGATCCTAGACAAGTTAATG +
Preference number: 3 (lower is better)
Translates to: GVPRRYFGTLCESTCPLKAMLCC*ILDKLM
Trigger: CATTAACTTGTCTAGGATCAAACAGCACAACATAGC...CTTGAGAGGACACGTGCTTTCACACAGGGTACCAAAATATCTTCTGGGGACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGGATGGTGTCCCGGTCTaGGCGGATGCGCGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: GESRPCFPDMGCSLSCVTDGVPV*ADARLL
Trigger: CAGGAGGCGCGCATCCGCGCAGACCGGGACACCATC...CGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GATCTGCAGCCCAGAGGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCGGGCTGGGAGCTCCTaGTCGATGCGCTCGATGCGG +
Preference number: 4 (lower is better)
Translates to: DLQPRGESRPCFPDMGCSRAGSS*SMRSMR
Trigger: CCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCG...GCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCCTCTGGGCTGCAGATC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp CCCGAGGTAGGCCTGGAGCATAGGGGATTTGAGGGTCAAAGGCTACCTCTACCCCGGATGCGCGCCTCCTaGTGCAGCGCCGTCTGGCGC +
Preference number: 4 (lower is better)
Translates to: PEVGLEHRGFEGQRLPLPRMRAS*CSAVWR
Trigger: GCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCG...GGGTAGAGGTAGCCTTTGACCCTCAAATCCCCTATGCTCCAGGCCTACCTCGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GGAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTGCTGTTGCAGGGCGCTCAGGCTaGGCTGCGGACCCGAGCCAC +
Preference number: 4 (lower is better)
Translates to: GRALWRDSEGLGLLCCAVAGRSG*AADPSH
Trigger: GTGGCTCGGGTCCGCAGCGCAGCCTGAGCGCCCTGC...AACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp AAGGTGGGGGAGGAGGGCAGTGGAGGGTCCTCGTTCCAAAGTGTCCAACCAGATGCCGTCTGGCGCAGCTaGTCCGCGGTGCTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: KVGEEGSGGSSFQSVQPDAVWRS*SAVLCS
Trigger: GCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGC...ATCTGGTTGGACACTTTGGAACGAGGACCCTCCACTGCCCTCCTCCCCCACCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp CTCTTGGGGAAGTTGGTAGGGACTAGGAGAAAGCGAGGCCCAGAGAGGGTAGGTCGGATGCGCGCCTCCTaGTGCAGCGCCGTCTGGCGC +
Preference number: 4 (lower is better)
Translates to: LLGKLVGTRRKRGPERVGRMRAS*CSAVWR
Trigger: GCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCG...ACCTACCCTCTCTGGGCCTCGCTTTCTCCTAGTCCCTACCAACTTCCCCAAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp TTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTGGCCAGATGTTCCCACGGGCTaGGAGCTCCTGCTCGATGCG +
Preference number: 4 (lower is better)
Translates to: FPDMGCSLSCVTSRAEWPDVPTG*ELLLDA
Trigger: CGCATCGAGCAGGAGCTCCCAGCCCGTGGGAACATC...TGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GGTGATATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCAGCCGTCTGGCGCAGCTaGTCCGCGGTGCTCTGCAGC +
Preference number: 4 (lower is better)
Translates to: GDMVAKPPGSAWEASPHSAVWRS*SAVLCS
Trigger: GCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGC...TGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCATATCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCCTCTGTATGCGCGCCTCCTGCTaGAGCGCCGTCTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: AKPPGSAWEASPHSLCLCMRASC*SAVWRS
Trigger: GCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCAT...ACAGAGGCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GTTGGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTCCCGGTCTGCGCGGATaGGCGCCTCCTGCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: VGTLSVWAFPLTSSGCQGPGLRG*APPAAA
Trigger: CGCTGCAGCAGGAGGCGCGCATCCGCGCAGACCGGG...ACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGTTCCCGGTCTGCGCGGATaGGCGCCTCCTGCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: GTLSVWAFPLTSSGCQGVPGLRG*APPAAA
Trigger: CGCTGCAGCAGGAGGCGCGCATCCGCGCAGACCGGG...AACACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTGCTGTTTTGCTGCAGCGCCGTCTaGCGCAGCTGCTCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: EEHFGGTQRAWACYVVLFCCSAV*RSCSAV
Trigger: CACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCA...AAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp ATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCGAGAAGGGGGTGCCCTaGCCGGAGCCACCTGACCTG +
Preference number: 4 (lower is better)
Translates to: MVAKPPGSAWEASPHSLCEKGVP*PEPPDL
Trigger: CAGGTCAGGTGGCTCCGGCCAGGGCACCCCCTTCTC...GCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTGGCCATGGAGCCGGTGTCAGAGCGTaGTCCCACAGGTTGAACTGT +
Preference number: 4 (lower is better)
Translates to: LTWAAASPASRLGLSGHGAGVRA*SHRLNC
Trigger: ACAGTTCAACCTGTGGGACCACGCTCTGACACCGGC...TCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCAGCAGGGCGCTCAGGCTaGGCTGCGGACCCGAGCCAC +
Preference number: 4 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSAGRSG*AADPSH
Trigger: GTGGCTCGGGTCCGCAGCGCAGCCTGAGCGCCCTGC...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCAGAGCCGCCTGCGCTGTaGAGGGCGCTCAGGCTGCGC +
Preference number: 4 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSEPPAL*RALRLR
Trigger: GCGCAGCCTGAGCGCCCTGCACAGCGCAGGCGGCTC...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGAGATGGTGTCCCGGTCTaGGCGGATGCGCGCCTCCTG +
Preference number: 4 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRDGVPV*ADARLL
Trigger: CAGGAGGCGCGCATCCGCGCAGACCGGGACACCATC...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTATGCGCGCCTCCTGCTaGAGCGCCGTCTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: AVPGWPINTGQVTLPLILMRASC*SAVWRS
Trigger: GCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCAT...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp TTGGGGAGACAGCAGAAGATTGAGTGGGGGCTCCACATGCTCAGAGAATGTTCATGCTGCAGCGCCGTCTaGCGCAGCTGCTCCGCGGTG +
Preference number: 4 (lower is better)
Translates to: LGRQQKIEWGLHMLRECSCCSAV*RSCSAV
Trigger: CACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCA...TGAACATTCTCTGAGCATGTGGAGCCCCCACTCAATCTTCTGCTGTCTCCCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCGAGCCGCCTGCGCTGTaGAGGGCGCTCAGGCTGCGC +
Preference number: 4 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGEPPAL*RALRLR
Trigger: GCGCAGCCTGAGCGCCCTGCACAGCGCAGGCGGCTC...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GGAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTGCTGTTGATCAGCAGCTCCATTaGCTCAAGGCCGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: GRALWRDSEGLGLLCCAVDQQLH*LKAGLQ
Trigger: CTGGAGGCCGGCCTTGAGCCAATGGAGCTGCTGATC...AACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCCTCTGTAGGCTCAGGGGCAGCTaGGCCACCTTGTCGTTGATC +
Preference number: 4 (lower is better)
Translates to: AKPPGSAWEASPHSLCLCRLRGS*ATLSLI
Trigger: GATCAACGACAAGGTGGCCCAGCTGCCCCTGAGCCT...ACAGAGGCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp AAGGTGGGGGAGGAGGGCAGTGGAGGGTCCTCGTTCCAAAGTGTCCAACCAGATGATAAGGATGCCGTGTaGCTTGATGGGGTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: KVGEEGSGGSSFQSVQPDDKDAV*LDGVPG
Trigger: GCCTGGCACCCCATCAAGCCACACGGCATCCTTATC...ATCTGGTTGGACACTTTGGAACGAGGACCCTCCACTGCCCTCCTCCCCCACCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CAACCGGTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATTGGTGGCCCGGTGCAGTTaGCCATGCCCAGCACCTGGG +
Preference number: 4 (lower is better)
Translates to: QPVSSQKTLDLALGLMSLVARCS*PCPAPG
Trigger: CCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCAC...CAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR TCA 90 bp GAGAACCTTCTCCAGTTTTCTCTCAGGCCAAAGGTGCTGGGACTAGTAGATAGGTACAGAGGAAGCGACTaGGCAGCGGCACGGGCGGCG +
Preference number: 4 (lower is better)
Translates to: ENLLQFSLRPKVLGLVDRYRGSD*AAARAA
Trigger: CGCCGCCCGTGCCGCTGCTCAGTCGCTTCCTCTGTA...CCTATCTACTAGTCCCAGCACCTTTGGCCTGAGAGAAAACTGGAGAAGGTTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CAACACTGGGCAAGTTACTTTACCTCTCATCCTTCTCTTGTGCACCACAGGGCTGAGAAGGGGGTGCCCTaGCCGGAGCCACCTGACCTG +
Preference number: 4 (lower is better)
Translates to: QHWASYFTSHPSLVHHRAEKGVP*PEPPDL
Trigger: CAGGTCAGGTGGCTCCGGCCAGGGCACCCCCTTCTC...AGCCCTGTGGTGCACAAGAGAAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCCTCTGTCGCAGTTCTCCGTCCTaGTATGCAGACCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: AKPPGSAWEASPHSLCLCRSSPS*YADHSP
Trigger: TGGGCTGTGGTCTGCATACCAGGACGGAGAACTGCG...ACAGAGGCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GGTGATATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCAGACATTGCCCATCAGTaGCCCGGTGCAGTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: GDMVAKPPGSAWEASPHSDIAHQ*PGAVGH
Trigger: ATGGCCAACTGCACCGGGCCACTGATGGGCAATGTC...TGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCATATCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp CAAGGACAGGCAGTGTGGTTCACAGGGAAGAGCACTTaGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTG +
Preference number: 4 (lower is better)
Translates to: QGQAVWFTGKST*EGLRGPGPAML
Trigger: CAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCCCTGTGAACCACACTGCCTGTCCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR TCA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTTACAGAGGAAGCGACTaGGCAGCGGCACGGGCGGCG +
Preference number: 4 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCYRGSD*AAARAA
Trigger: CGCCGCCCGTGCCGCTGCTCAGTCGCTTCCTCTGTA...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTGCAGCTGCTCCGCGGTaGTCTGCAGCAGCAACAGCT +
Preference number: 4 (lower is better)
Translates to: AVPGWPINTGQVTLPLILAAAPR*SAAATA
Trigger: AGCTGTTGCTGCTGCAGAGCACCGCGGAGCAGCTGC...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GTTGGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTGATCAGCAGCTCCATTaGCTCAAGGCCGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: VGTLSVWAFPLTSSGCQGDQQLH*LKAGLQ
Trigger: CTGGAGGCCGGCCTTGAGCCAATGGAGCTGCTGATC...ACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp ACCCCCAACAGATCCTCATACTTCAGTCTGTGGTCCCCATTCACATGTAACTGTGTGGCCCGGTGCAGTTaGCCATGCCCAGCACCTGGG +
Preference number: 4 (lower is better)
Translates to: TPNRSSYFSLWSPFTCNCVARCS*PCPAPG
Trigger: CCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCAC...ACAGTTACATGTGAATGGGGACCACAGACTGAAGTATGAGGATCTGTTGGGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGAGACATTGCCCATCAGTaGCCCGGTGCAGTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRDIAHQ*PGAVGH
Trigger: ATGGCCAACTGCACCGGGCCACTGATGGGCAATGTC...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp AAGGGAAGGCCGGCGTGTAGACAGGCTGAGGAGGGATaGCCCCTTCAAAGTCCTGAAACTGACAGGCAATGG +
Preference number: 4 (lower is better)
Translates to: KGRPACRQAEEG*PLQSPETDRQW
Trigger: CCATTGCCTGTCAGTTTCAGGACTTTGAAGGGGCAATCCCTCCTCAGCCTGTCTACACGCCGGCCTTCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CCTGCTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTCTCTGTGCTCCGGAGCCACCTGACCTaGAGCGCAGCCACATGCAGG +
Preference number: 4 (lower is better)
Translates to: PAMLCCLILDKLMALSVLRSHLT*SAATCR
Trigger: CCTGCATGTGGCTGCGCTCCAGGTCAGGTGGCTCCG...GAGCACAGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCCGGAGCCACCTGACCTaGAGCGCAGCCACATGCAGG +
Preference number: 4 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGRSHLT*SAATCR
Trigger: CCTGCATGTGGCTGCGCTCCAGGTCAGGTGGCTCCG...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GTTGGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCTCCTCAGGCTGTCAAGGTCGCAGTTCTCCGTCCTaGTATGCAGACCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: VGTLSVWAFPLTSSGCQGRSSPS*YADHSP
Trigger: TGGGCTGTGGTCTGCATACCAGGACGGAGAACTGCG...ACCTTGACAGCCTGAGGAGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR GCA 90 bp CGCACTCACACATACAGAGCATCTCGTGTTACTTATGTACAAAATAGGGCAAGGCGGGCTGGGAGCTCCTaGTCGATGCGCTCGATGCGG +
Preference number: 4 (lower is better)
Translates to: RTHTYRASRVTYVQNRARRAGSS*SMRSMR
Trigger: CCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCG...CCTTGCCCTATTTTGTACATAAGTAACACGAGATGCTCTGTATGTGTGAGTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CCTGCTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTCTCTGTGCTCGATGTTCCCACGGGCTaGGAGCTCCTGCTCGATGCG +
Preference number: 4 (lower is better)
Translates to: PAMLCCLILDKLMALSVLDVPTG*ELLLDA
Trigger: CGCATCGAGCAGGAGCTCCCAGCCCGTGGGAACATC...GAGCACAGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CAACCGGTGTCCTCACAAAAGACACTTGACCTAGCACTGGGGCTGATGTCATTGGCCGGTGTCAGAGCGTaGTCCCACAGGTTGAACTGT +
Preference number: 4 (lower is better)
Translates to: QPVSSQKTLDLALGLMSLAGVRA*SHRLNC
Trigger: ACAGTTCAACCTGTGGGACCACGCTCTGACACCGGC...CAATGACATCAGCCCCAGTGCTAGGTCAAGTGTCTTTTGTGAGGACACCGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp AGAGGACCAACAGGGCCTTGCATCCTCTGCTGTCTGTaGGAACTCTGTCTGTCTGGGCTTTTCCTCTCACCT +
Preference number: 4 (lower is better)
Translates to: RGPTGPCILCCL*ELCLSGLFLSP
Trigger: AGGTGAGAGGAAAAGCCCAGACAGACAGAGTTCCAACAGACAGCAGAGGATGCAAGGCCCTGTTGGTCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CCTGCTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTCTCTGTGCTCAGGCTCAGGGGCAGCTaGGCCACCTTGTCGTTGATC +
Preference number: 4 (lower is better)
Translates to: PAMLCCLILDKLMALSVLRLRGS*ATLSLI
Trigger: GATCAACGACAAGGTGGCCCAGCTGCCCCTGAGCCT...GAGCACAGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCCTCTGTCAGGAGATGCAGATATaGTGCCAGTTGCTGTCTTTC +
Preference number: 4 (lower is better)
Translates to: AKPPGSAWEASPHSLCLCQEMQI*CQLLSF
Trigger: GAAAGACAGCAACTGGCACCATATCTGCATCTCCTG...ACAGAGGCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp GGTGTCCCCAGAAGATATTTTGGTACCCTGTGTGAAAGCACGTGTCCTCTCAAGGATAAGGATGCCGTGTaGCTTGATGGGGTGCCAGGC +
Preference number: 4 (lower is better)
Translates to: GVPRRYFGTLCESTCPLKDKDAV*LDGVPG
Trigger: GCCTGGCACCCCATCAAGCCACACGGCATCCTTATC...CTTGAGAGGACACGTGCTTTCACACAGGGTACCAAAATATCTTCTGGGGACACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp CCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATaGTGCCTCTGTTTTAGATGTTCTCAGGACAGGCTA +
Preference number: 4 (lower is better)
Translates to: PPGSAWEASPHS*CLCFRCSQDRL
Trigger: TAGCCTGTCCTGAGAACATCTAAAACAGAGGCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp ACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTaGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTC +
Preference number: 4 (lower is better)
Translates to: TLEGLRGPGPAM*CCLILDKLMAL
Trigger: GAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp TACTGTTCCAATCCATGGGAGAGGACCAACAGGGCCTaGCATCCTCTGCTGTCTGTTGGAACTCTGTCTGTC +
Preference number: 4 (lower is better)
Translates to: YCSNPWERTNRA*HPLLSVGTLSV
Trigger: GACAGACAGAGTTCCAACAGACAGCAGAGGATGCAAGGCCCTGTTGGTCCTCTCCCATGGATTGGAACAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp GAAGAGAAGGACAGTCAAGGGAACTTCCAGGGTCATTaGAGCTTCCTGGCCAGACCTCAGCTCCCTCATCTA +
Preference number: 4 (lower is better)
Translates to: EEKDSQGNFQGH*SFLARPQLPHL
Trigger: TAGATGAGGGAGCTGAGGTCTGGCCAGGAAGCTCAAATGACCCTGGAAGTTCCCTTGACTGTCCTTCTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CCTGCTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTCTCTGTGCTCCTAGTTCGTCCATCTTaGAGTGCAGGGCGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: PAMLCCLILDKLMALSVLLVRPS*SAGRWA
Trigger: TGCCCACCGCCCTGCACTCCAAGATGGACGAACTAG...GAGCACAGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp GGCTGTCAAGGTGTTGGGGTGTCCCCAGAAGATATTTaGGTACCCTGTGTGAAAGCACGTGTCCTCTCAAGT +
Preference number: 4 (lower is better)
Translates to: GCQGVGVSPEDI*VPCVKARVLSS
Trigger: ACTTGAGAGGACACGTGCTTTCACACAGGGTACCAAAATATCTTCTGGGGACACCCCAACACCTTGACAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
3UTR CAA 72 bp TCTCTTGTGCACCACAGGGCTAAGAACAGTCTCGCTTaGTGCTGTGAGGATAAACCAGATGGTGCGGATACC +
Preference number: 4 (lower is better)
Translates to: SLVHHRAKNSLA*CCEDKPDGADT
Trigger: GGTATCCGCACCATCTGGTTTATCCTCACAGCACAAAGCGAGACTGTTCTTAGCCCTGTGGTGCACAAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CCA 90 bp CCTGCTATGTTGTGCTGTTTGATCCTAGACAAGTTAATGGCCCTCTCTGTGCTCCAGGAGATGCAGATATaGTGCCAGTTGCTGTCTTTC +
Preference number: 4 (lower is better)
Translates to: PAMLCCLILDKLMALSVLQEMQI*CQLLSF
Trigger: GAAAGACAGCAACTGGCACCATATCTGCATCTCCTG...GAGCACAGAGAGGGCCATTAACTTGTCTAGGATCAAACAGCACAACATAGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CCA 90 bp TCCCAGGCGCCGTCGGCCATGGTGTCGCGGCGGGGCCCGGCGTCCTaGAGGCCGCGCGGCAGGCCGCTCTCACAGCGGCCCAGCTTGCCG +
Preference number: 5 (lower is better)
Translates to: SQAPSAMVSRRGPAS*RPRGRPLSQRPSLP
Trigger: CGGCAAGCTGGGCCGCTGTGAGAGCGGCCTGCCGCGCGGCCTCCAGGACGCCGGGCCCCGCCGCGACACCATGGCCGACGGCGCCTGGGA
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS TCA 90 bp CCCCCGACGGGCAGGCGGCGGCCAGCGGCGTACAGAGGAAGCGACTaGGCAGCGGCACGGGCGGCGGCGGGAAGACGCTGGCCGCGGGCT +
Preference number: 5 (lower is better)
Translates to: PPTGRRRPAAYRGSD*AAARAAAGRRWPRA
Trigger: AGCCCGCGGCCAGCGTCTTCCCGCCGCCGCCCGTGCCGCTGCTCAGTCGCTTCCTCTGTACGCCGCTGGCCGCCGCCTGCCCGTCGGGGG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CCA 90 bp CCAGCTCCAGCAGCAGCGCAGGTGAGTCCCAGGCGCCGTCGGCCATaGTGTCGCGGCGGGGCCCGGCGTCCTGGAGGCCGCGCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: PAPAAAQVSPRRRRP*CRGGARRPGGRAAG
Trigger: GCCTGCCGCGCGGCCTCCAGGACGCCGGGCCCCGCCGCGACACCATGGCCGACGGCGCCTGGGACTCACCTGCGCTGCTGCTGGAGCTGG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp CTCTGCAGCAGCAACAGCTCTGCGCGCTCGCCTGCCGCGTCCCCCTaGTCGGCCCCCGACGGGCAGGCGGCGGCCAGCGGCGTACAGAGG +
Preference number: 5 (lower is better)
Translates to: LCSSNSSARSPAASP*SAPDGQAAASGVQR
Trigger: CCTCTGTACGCCGCTGGCCGCCGCCTGCCCGTCGGGGGCCGAGCAGGGGGACGCGGCAGGCGAGCGCGCAGAGCTGTTGCTGCTGCAGAG
77% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp GCCTCCTGCTGCAGCGCCGTCTGGCGCAGCTGCTCCGCGGTGCTCTaGAGCAGCAACAGCTCTGCGCGCTCGCCTGCCGCGTCCCCCTGC +
Preference number: 5 (lower is better)
Translates to: ASCCSAVWRSCSAVL*SSNSSARSPAASPC
Trigger: GCAGGGGGACGCGGCAGGCGAGCGCGCAGAGCTGTTGCTGCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp TGCGCGCCTCCTGCTGCAGCGCCGTCTGGCGCAGCTGCTCCGCGGTaGTCTGCAGCAGCAACAGCTCTGCGCGCTCGCCTGCCGCGTCCC +
Preference number: 5 (lower is better)
Translates to: CAPPAAAPSGAAAPR*SAAATALRARLPRP
Trigger: GGGACGCGGCAGGCGAGCGCGCAGAGCTGTTGCTGCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCA
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp TCTGCGCGGATGCGCGCCTCCTGCTGCAGCGCCGTCTGGCGCAGCTaGTCCGCGGTGCTCTGCAGCAGCAACAGCTCTGCGCGCTCGCCT +
Preference number: 5 (lower is better)
Translates to: SARMRASCCSAVWRS*SAVLCSSNSSARSP
Trigger: AGGCGAGCGCGCAGAGCTGTTGCTGCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCGCGCAGA
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp GCTGGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTGGGAGCTCCTaGTCGATGCGCTCGATGCGGTCTCGCAGCGCGCGCACCGCGTCC +
Preference number: 5 (lower is better)
Translates to: AGAGAEEMFPRAGSS*SMRSMRSRSARTAS
Trigger: GGACGCGGTGCGCGCGCTGCGAGACCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CCA 90 bp GTGTCCCGGTCTGCGCGGATGCGCGCCTCCTGCTGCAGCGCCGTCTaGCGCAGCTGCTCCGCGGTGCTCTGCAGCAGCAACAGCTCTGCG +
Preference number: 5 (lower is better)
Translates to: VSRSARMRASCCSAV*RSCSAVLCSSNSSA
Trigger: CGCAGAGCTGTTGCTGCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCGCGCAGACCGGGACAC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp CTGGCGCCGAGGAGATGTTCCCACGGGCTGGGAGCTCCTGCTCGATaGGCTCGATGCGGTCTCGCAGCGCGCGCACCGCGTCCTCCAGCT +
Preference number: 5 (lower is better)
Translates to: LAPRRCSHGLGAPAR*ARCGLAARAPRPPA
Trigger: AGCTGGAGGACGCGGTGCGCGCGCTGCGAGACCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS TCA 90 bp GCATTCAGCTCCTTCTCCACTTCCTGTCGTTGCTGGTGGCTCCCGTaGCTGAGGGCGGCTCGCTCCTTCTCCAGCGCCAGCACCTTGGCC +
Preference number: 5 (lower is better)
Translates to: AFSSFSTSCRCWWLP*LRAARSFSSASTLA
Trigger: GGCCAAGGTGCTGGCGCTGGAGAAGGAGCGAGCCGCCCTCAGTCACGGGAGCCACCAGCAACGACAGGAAGTGGAGAAGGAGCTGAATGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp CCAGCTTATCTTCCCAGGGGAGGACATTGCCCATCAGTGGCCCGGTaGAGTTGGCCATGCCCAGCACCTGGGCCGGTGTCAGAGCGTGGT +
Preference number: 5 (lower is better)
Translates to: PAYLPRGGHCPSVAR*SWPCPAPGPVSERG
Trigger: ACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAAGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp CTGACATGGGCTGCAGCCTCTCCTGCGTCACGTCTCGGGCTGAGTGGCCATGGAAGGATGCCGTGTGGCTaGATGGGGTGCCAGGCTGCT +
Preference number: 5 (lower is better)
Translates to: LTWAAASPASRLGLSGHGRMPCG*MGCQAA
Trigger: AGCAGCCTGGCACCCCATCAAGCCACACGGCATCCT...TCCATGGCCACTCAGCCCGAGACGTGACGCAGGAGAGGCTGCAGCCCATGTCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp CACCTCCAAAGGCCTCTACCAGCTTATCTTCCCAGGGGAGGACATTaGCCATCAGTGGCCCGGTGCAGTTGGCCATGCCCAGCACCTGGG +
Preference number: 5 (lower is better)
Translates to: HLQRPLPAYLPRGGH*PSVARCSWPCPAPG
Trigger: CCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAAGCTGGTAGAGGCCTTTGGAGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp GGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGCAAGGTATCCTGCTCTaGGCCCAGGATAAGGATGCC +
Preference number: 5 (lower is better)
Translates to: GESRPCFPDMGCSLSCVTQGILL*AQDKDA
Trigger: GGCATCCTTATCCTGGGCCAAGAGCAGGATACCTTG...CGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp GGCGAGTCTCGGCCATGCTTCCCTGACATGGGCTGCAGCCTCTCCTGCGTCACGGCGTGGTCCCACAGGTaGAACTGTGCAATGTCACCA +
Preference number: 5 (lower is better)
Translates to: GESRPCFPDMGCSLSCVTAWSHR*NCAMSP
Trigger: TGGTGACATTGCACAGTTCAACCTGTGGGACCACGC...CGTGACGCAGGAGAGGCTGCAGCCCATGTCAGGGAAGCATGGCCGAGACTCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp CAGCACCTGGGCCGGTGTCAGAGCGTGGTCCCACAGGTTGAACTGTaGAATGTCACCAACGAAGGCCTGTGTGGCGTCAAATCGGCCTCC +
Preference number: 5 (lower is better)
Translates to: QHLGRCQSVVPQVEL*NVTNEGLCGVKSAS
Trigger: GGAGGCCGATTTGACGCCACACAGGCCTTCGTTGGTGACATTGCACAGTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp ACATGCTCGCTGCTGGCGGCTCAGCCAGGGAAGGAGTCTGTTCTCCATCCAGCATCTAGTTCGTCCATCTaGGAGTGCAGGGCGGTGGGC +
Preference number: 5 (lower is better)
Translates to: TCSLLAAQPGKESVLHPASSSSI*ECRAVG
Trigger: GCCCACCGCCCTGCACTCCAAGATGGACGAACTAGA...TGCTGGATGGAGAACAGACTCCTTCCCTGGCTGAGCCGCCAGCAGCGAGCATGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp GGAAGAGCACTTTGGAGGGACTCAGAGGGCCTGGGCCTGCTATGTTGTGCTGTTTCCCAGGGGAGGACATaGCCCATCAGTGGCCCGGTG +
Preference number: 5 (lower is better)
Translates to: GRALWRDSEGLGLLCCAVSQGRT*PISGPV
Trigger: CACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGA...AACAGCACAACATAGCAGGCCCAGGCCCTCTGAGTCCCTCCAAAGTGCTCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS TCA 90 bp CCATGCCCAGCACCTGGGCCGGTGTCAGAGCGTGGTCCCACAGGTTaGACTGTGCAATGTCACCAACGAAGGCCTGTGTGGCGTCAAATC +
Preference number: 5 (lower is better)
Translates to: PCPAPGPVSERGPTG*TVQCHQRRPVWRQI
Trigger: GATTTGACGCCACACAGGCCTTCGTTGGTGACATTGCACAGTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 90 bp CCAACGAAGGCCTGTGTGGCGTCAAATCGGCCTCCCAAGGTATCCTaGTCTTGGCCCAGGATAAGGATGCCGTGTGGCTTGATGGGGTGC +
Preference number: 5 (lower is better)
Translates to: PTKACVASNRPPKVS*SWPRIRMPCGLMGC
Trigger: GCACCCCATCAAGCCACACGGCATCCTTATCCTGGGCCAAGAGCAGGATACCTTGGGAGGCCGATTTGACGCCACACAGGCCTTCGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp GGTGATATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCAGGCAGCTGGGCCACCTaGTCGTTGATCAGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: GDMVAKPPGSAWEASPHSGSWAT*SLISSS
Trigger: GGAGCTGCTGATCAACGACAAGGTGGCCCAGCTGCC...TGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCATATCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp CAGGCTGAGGAGGGATTGCCCCTTCAAAGTCCTGAAACTGACAGGCAATGGAGGTCCCAGGGGAGGACATaGCCCATCAGTGGCCCGGTG +
Preference number: 5 (lower is better)
Translates to: QAEEGLPLQSPETDRQWRSQGRT*PISGPV
Trigger: CACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGA...CCTCCATTGCCTGTCAGTTTCAGGACTTTGAAGGGGCAATCCCTCCTCAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp ATGGTGGCTAAGCCACCAGGCTCTGCCTGGGAAGCATCCCCTCATTCATTGTGCTCTAGTTCGTCCATCTaGGAGTGCAGGGCGGTGGGC +
Preference number: 5 (lower is better)
Translates to: MVAKPPGSAWEASPHSLCSSSSI*ECRAVG
Trigger: GCCCACCGCCCTGCACTCCAAGATGGACGAACTAGA...GCACAATGAATGAGGGGATGCTTCCCAGGCAGAGCCTGGTGGCTTAGCCACCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp GCTGTTCCCGGCTGGCCAATCAACACTGGGCAAGTTACTTTACCTCTCATCCTTAGTTCCGGCAGCGCCTaGCGCACGCGGGCGTACATG +
Preference number: 5 (lower is better)
Translates to: AVPGWPINTGQVTLPLILSSGSA*RTRAYM
Trigger: CATGTACGCCCGCGTGCGCAAGGCGCTGCCGGAACT...AAGGATGAGAGGTAAAGTAACTTGCCCAGTGTTGATTGGCCAGCCGGGAACAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCAGTTCCGGCAGCGCCTaGCGCACGCGGGCGTACATG +
Preference number: 5 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGSSGSA*RTRAYM
Trigger: CATGTACGCCCGCGTGCGCAAGGCGCTGCCGGAACT...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp CTCTTGGGGAAGTTGGTAGGGACTAGGAGAAAGCGAGGCCCAGAGAGGGTAGGTCAGATATGGTGCCAGTaGCTGTCTTTCAGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: LLGKLVGTRRKRGPERVGQIWCQ*LSFRLR
Trigger: CCTGAGCCTGAAAGACAGCAACTGGCACCATATCTG...ACCTACCCTCTCTGGGCCTCGCTTTCTCCTAGTCCCTACCAACTTCCCCAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp AGGATAAACCAGATGGTGCGGATACCGTGCTCCGTGCTGTCTCCAGGCCTAAGACAGATATGGTGCCAGTaGCTGTCTTTCAGGCTCAGG +
Preference number: 5 (lower is better)
Translates to: RINQMVRIPCSVLSPGLRQIWCQ*LSFRLR
Trigger: CCTGAGCCTGAAAGACAGCAACTGGCACCATATCTG...TCTTAGGCCTGGAGACAGCACGGAGCACGGTATCCGCACCATCTGGTTTATCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp TTACCTCTCATCCTTCTCTTGTGCACCACAGGGCTAAGAACAGTCTCGCTTTGTAGGATGCCGTGTGGCTaGATGGGGTGCCAGGCTGCT +
Preference number: 5 (lower is better)
Translates to: LPLILLLCTTGLRTVSLCRMPCG*MGCQAA
Trigger: AGCAGCCTGGCACCCCATCAAGCCACACGGCATCCT...ACAAAGCGAGACTGTTCTTAGCCCTGTGGTGCACAAGAGAAGGATGAGAGGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp GAGAACCTTCTCCAGTTTTCTCTCAGGCCAAAGGTGCTGGGACTAGTAGATAGGCAAGGTATCCTGCTCTaGGCCCAGGATAAGGATGCC +
Preference number: 5 (lower is better)
Translates to: ENLLQFSLRPKVLGLVDRQGILL*AQDKDA
Trigger: GGCATCCTTATCCTGGGCCAAGAGCAGGATACCTTG...CCTATCTACTAGTCCCAGCACCTTTGGCCTGAGAGAAAACTGGAGAAGGTTCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS-3UTR CAA 90 bp TTTCTGACGACCTCTAAAGATACTCCTTTCTTGCCCTTAGACTGCAGCTCAGGCGCGTGGTCCCACAGGTaGAACTGTGCAATGTCACCA +
Preference number: 5 (lower is better)
Translates to: FLTTSKDTPFLPLDCSSGAWSHR*NCAMSP
Trigger: TGGTGACATTGCACAGTTCAACCTGTGGGACCACGC...GCCTGAGCTGCAGTCTAAGGGCAAGAAAGGAGTATCTTTAGAGGTCGTCAGAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp CTCCCCGGGCAACACCGAGGGCCCGGCCGAGCCGCCTaGGCTGTGCAGGGCGCTCAGGCTGCGCTGCGGACC +
Preference number: 6 (lower is better)
Translates to: LPGQHRGPGRAA*AVQGAQAALRT
Trigger: GGTCCGCAGCGCAGCCTGAGCGCCCTGCACAGCGCAGGCGGCTCGGCCGGGCCCTCGGTGTTGCCCGGGGAG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CCA 72 bp GCAGCAGCGCAGGTGAGTCCCAGGCGCCGTCGGCCATaGTGTCGCGGCGGGGCCCGGCGTCCTGGAGGCCGC +
Preference number: 6 (lower is better)
Translates to: AAAQVSPRRRRP*CRGGARRPGGR
Trigger: GCGGCCTCCAGGACGCCGGGCCCCGCCGCGACACCATGGCCGACGGCGCCTGGGACTCACCTGCGCTGCTGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp CGGATGGTGTCCCGGTCTGCGCGGATGCGCGCCTCCTaGTGCAGCGCCGTCTGGCGCAGCTGCTCCGCGGTG +
Preference number: 6 (lower is better)
Translates to: RMVSRSARMRAS*CSAVWRSCSAV
Trigger: CACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCGCGCAGACCGGGACACCATCCG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp TGCAGCGCCGTCTGGCGCAGCTGCTCCGCGGTGCTCTaGAGCAGCAACAGCTCTGCGCGCTCGCCTGCCGCG +
Preference number: 6 (lower is better)
Translates to: CSAVWRSCSAVL*SSNSSARSPAA
Trigger: CGCGGCAGGCGAGCGCGCAGAGCTGTTGCTGCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCA
74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp ATGGTGTCCCGGTCTGCGCGGATGCGCGCCTCCTGCTaGAGCGCCGTCTGGCGCAGCTGCTCCGCGGTGCTC +
Preference number: 6 (lower is better)
Translates to: MVSRSARMRASC*SAVWRSCSAVL
Trigger: GAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCGCGCAGACCGGGACACCAT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp TCCCACGGGCTGGGAGCTCCTGCTCGATGCGCTCGATaGGGTCTCGCAGCGCGCGCACCGCGTCCTCCAGCT +
Preference number: 6 (lower is better)
Translates to: SHGLGAPARCAR*GLAARAPRPPA
Trigger: AGCTGGAGGACGCGGTGCGCGCGCTGCGAGACCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCGTGGGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp GGCGCCGAGGAGATGTTCCCACGGGCTGGGAGCTCCTaGTCGATGCGCTCGATGCGGTCTCGCAGCGCGCGC +
Preference number: 6 (lower is better)
Translates to: GAEEMFPRAGSS*SMRSMRSRSAR
Trigger: GCGCGCGCTGCGAGACCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CCA 72 bp TCTGCGCGGATGCGCGCCTCCTGCTGCAGCGCCGTCTaGCGCAGCTGCTCCGCGGTGCTCTGCAGCAGCAAC +
Preference number: 6 (lower is better)
Translates to: SARMRASCCSAV*RSCSAVLCSSN
Trigger: GTTGCTGCTGCAGAGCACCGCGGAGCAGCTGCGCCAGACGGCGCTGCAGCAGGAGGCGCGCATCCGCGCAGA
72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp AGGAGATGTTCCCACGGGCTGGGAGCTCCTGCTCGATaGGCTCGATGCGGTCTCGCAGCGCGCGCACCGCGT +
Preference number: 6 (lower is better)
Translates to: RRCSHGLGAPAR*ARCGLAARAPR
Trigger: ACGCGGTGCGCGCGCTGCGAGACCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CCA 72 bp GGCTGGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTaGGAGCTCCTGCTCGATGCGCTCGATGCGGTCTCG +
Preference number: 6 (lower is better)
Translates to: GWSWRRGDVPTG*ELLLDALDAVS
Trigger: CGAGACCGCATCGAGCGCATCGAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp GGACATTGCCCATCAGTGGCCCGGTGCAGTTGGCCATaGCCAGCACCTGGGCCGGTGTCAGAGCGTGGTCCC +
Preference number: 6 (lower is better)
Translates to: GHCPSVARCSWP*PAPGPVSERGP
Trigger: GGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CAA 72 bp CAGGGGAGGACATTGCCCATCAGTGGCCCGGTGCAGTaGGCCATGCCCAGCACCTGGGCCGGTGTCAGAGCG +
Preference number: 6 (lower is better)
Translates to: QGRTLPISGPVQ*AMPSTWAGVRA
Trigger: CGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CAA 90 bp TTATCTTCCCAGGGGAGGACATTGCCCATCAGTGGCCCGGTGCAGTaGGCCATGCCCAGCACCTGGGCCGGTGTCAGAGCGTGGTCCCAC +
Preference number: 6 (lower is better)
Translates to: LSSQGRTLPISGPVQ*AMPSTWAGVRAWSH
Trigger: GTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CAA 90 bp GCACCTCCAAAGGCCTCTACCAGCTTATCTTCCCAGGGGAGGACATaGCCCATCAGTGGCCCGGTGCAGTTGGCCATGCCCAGCACCTGG +
Preference number: 6 (lower is better)
Translates to: APPKASTSLSSQGRT*PISGPVQLAMPSTW
Trigger: CCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAAGCTGGTAGAGGCCTTTGGAGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS TCA 72 bp GCACCTGGGCCGGTGTCAGAGCGTGGTCCCACAGGTTaGACTGTGCAATGTCACCAACGAAGGCCTGTGTGG +
Preference number: 6 (lower is better)
Translates to: APGPVSERGPTG*TVQCHQRRPVW
Trigger: CCACACAGGCCTTCGTTGGTGACATTGCACAGTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS GCA 72 bp AGGCCTCTACCAGCTTATCTTCCCAGGGGAGGACATTaGCCATCAGTGGCCCGGTGCAGTTGGCCATGCCCA +
Preference number: 6 (lower is better)
Translates to: RPLPAYLPRGGH*PSVARCSWPCP
Trigger: TGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAAGCTGGTAGAGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CAA 72 bp AAGGCCTCTACCAGCTTATCTTCCCAGGGGAGGACATaGCCCATCAGTGGCCCGGTGCAGTTGGCCATGCCC +
Preference number: 6 (lower is better)
Translates to: KASTSLSSQGRT*PISGPVQLAMP
Trigger: GGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAAGCTGGTAGAGGCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CAA 90 bp GCCATGCCCAGCACCTGGGCCGGTGTCAGAGCGTGGTCCCACAGGTaGAACTGTGCAATGTCACCAACGAAGGCCTGTGTGGCGTCAAAT +
Preference number: 6 (lower is better)
Translates to: AMPSTWAGVRAWSHR*NCAMSPTKACVASN
Trigger: ATTTGACGCCACACAGGCCTTCGTTGGTGACATTGCACAGTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10
CDS CAA 72 bp TGTGGCGTCAAATCGGCCTCCCAAGGTATCCTGCTCTaGGCCCAGGATAAGGATGCCGTGTGGCTTGATGGG +
Preference number: 6 (lower is better)
Translates to: CGVKSASQGILL*AQDKDAVWLDG
Trigger: CCCATCAAGCCACACGGCATCCTTATCCTGGGCCAAGAGCAGGATACCTTGGGAGGCCGATTTGACGCCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023057.10
ENSMUST00000175858.10