RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NPTX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025582

Ensembl transcript IDs: ENSMUST00000026670.5

Found 196 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGGGTGTCCTTGGGGGCCAGAGAAGAGCCGGGACTGCTTCAAGTaGACAAGGAGGACAACCAGGCTGTGTGCGTGTGCGTGTGCAGGG +
Preference number: 1 (lower is better)
Translates to: RGCPWGPEKSRDCFK*TRRTTRLCACACAG
Trigger: CCCTGCACACGCACACGCACACAGCCTGGTTGTCCTCCTTGTGCACTTGAAGCAGTCCCGGCTCTTCTCTGGCCCCCAAGGACACCCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp CAGAAGCATTGGGGTGTGCTCTGCCCTCTAAGCCAGGGCAGAGGATaGCTTGTGGTCCTGAACGGACAGCTCCCACCCCACCCGTCTGGG +
Preference number: 1 (lower is better)
Translates to: QKHWGVLCPLSQGRG*LVVLNGQLPPHPSG
Trigger: CCCAGACGGGTGGGGTGGGAGCTGTCCGTTCAGGACCACAAGCCATCCTCTGCCCTGGCTTAGAGGGCAGAGCACACCCCAATGCTTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 90 bp GAGCCGGGACTGCTTCAAGTGCACAAGGAGGACAACCAGGCTGTGTaGGTGTGCGTGTGCAGGGGCCATGGCCTTGAGTCATTCCTGGGG +
Preference number: 1 (lower is better)
Translates to: EPGLLQVHKEDNQAV*VCVCRGHGLESFLG
Trigger: CCCCAGGAATGACTCAAGGCCATGGCCCCTGCACACGCACACGCACACAGCCTGGTTGTCCTCCTTGTGCACTTGAAGCAGTCCCGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 90 bp CTAGAGAGAAGGGGGTGTCCTTGGGGGCCAGAGAAGAGCCGGGACTaGTTCAAGTGCACAAGGAGGACAACCAGGCTGTGTGCGTGTGCG +
Preference number: 1 (lower is better)
Translates to: LERRGCPWGPEKSRD*FKCTRRTTRLCACA
Trigger: CGCACACGCACACAGCCTGGTTGTCCTCCTTGTGCACTTGAAGCAGTCCCGGCTCTTCTCTGGCCCCCAAGGACACCCCCTTCTCTCTAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 90 bp CCACCCTGCCTGGACACAGCCTCCTCAGCATTCAACAGACACATGTaGACACACGCATTTCGTCCCCCTCCTCAGAAGGCCCAGAAGGGG +
Preference number: 1 (lower is better)
Translates to: PPCLDTASSAFNRHM*THAFRPPPQKAQKG
Trigger: CCCCTTCTGGGCCTTCTGAGGAGGGGGACGAAATGCGTGTGTGCACATGTGTCTGTTGAATGCTGAGGAGGCTGTGTCCAGGCAGGGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp CACTTGAAGCCTCTGGTCTCTCATTGCCAGAGGGAGGAAGAAGGGTaGGTGCCAAGGCCCTGTGTCCTGGGACTCTGGAAGGGCACTCTC +
Preference number: 1 (lower is better)
Translates to: HLKPLVSHCQREEEG*VPRPCVLGLWKGTL
Trigger: GAGAGTGCCCTTCCAGAGTCCCAGGACACAGGGCCTTGGCACCCACCCTTCTTCCTCCCTCTGGCAATGAGAGACCAGAGGCTTCAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp AGCAAGAAGGCTTACAATTCAAGTGAGCTCTCAGCCCCTAGGGCCTaGGAGCCTCCGTGGCAGCTCTACCACCCTAATGCCCAGGGTGCT +
Preference number: 1 (lower is better)
Translates to: SKKAYNSSELSAPRA*EPPWQLYHPNAQGA
Trigger: AGCACCCTGGGCATTAGGGTGGTAGAGCTGCCACGGAGGCTCCCAGGCCCTAGGGGCTGAGAGCTCACTTGAATTGTAAGCCTTCTTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 90 bp ACCCGGCGGGCGCTGAGGAAGCACAATTATCTAAGAAAAAGCCACTaGTGGACAACGGGTGGAGCACAGCCTGATCCGCACCCTCAGAGA +
Preference number: 1 (lower is better)
Translates to: TRRALRKHNYLRKSH*WTTGGAQPDPHPQR
Trigger: TCTCTGAGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTGGCTTTTTCTTAGATAATTGTGCTTCCTCAGCGCCCGCCGGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp CAGAGACCTACATCACTCCCAAAGAGGTCTGCAAACAAGGACAAATaGGTGGTCCAGGAAGCCGCACCAGCCCTGAGGCACACAGGCAGC +
Preference number: 1 (lower is better)
Translates to: QRPTSLPKRSANKDK*VVQEAAPALRHTGS
Trigger: GCTGCCTGTGTGCCTCAGGGCTGGTGCGGCTTCCTGGACCACCCATTTGTCCTTGTTTGCAGACCTCTTTGGGAGTGATGTAGGTCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp CGGCGGGCGCTGAGGAAGCACAATTATCTAAGAAAAAGCCACTGCTaGACAACGGGTGGAGCACAGCCTGATCCGCACCCTCAGAGAGGA +
Preference number: 1 (lower is better)
Translates to: RRALRKHNYLRKSHC*TTGGAQPDPHPQRG
Trigger: TCCTCTCTGAGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTGGCTTTTTCTTAGATAATTGTGCTTCCTCAGCGCCCGCCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 90 bp CAAGGGAACACGCGTCAGACCAAGGGAGCAAGGGACACACCACCCTaGGGAACATGCAAACACAGAAGATCCCCGCAGATCCAAGGATGC +
Preference number: 1 (lower is better)
Translates to: QGNTRQTKGARDTPP*GTCKHRRSPQIQGC
Trigger: GCATCCTTGGATCTGCGGGGATCTTCTGTGTTTGCATGTTCCTCAGGGTGGTGTGTCCCTTGCTCCCTTGGTCTGACGCGTGTTCCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 90 bp TTATCTAAGAAAAAGCCACTGCTGGACAACGGGTGGAGCACAGCCTaGTCCGCACCCTCAGAGAGGATGCACCACAGAGCAGTGACCAGG +
Preference number: 1 (lower is better)
Translates to: LSKKKPLLDNGWSTA*SAPSERMHHRAVTR
Trigger: CCTGGTCACTGCTCTGTGGTGCATCCTCTCTGAGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTGGCTTTTTCTTAGATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 90 bp TCAGATGTAGACAGCAGACAGCCTGATGGGGACGTGGGAAGGGGCTaGTTGGTAGGTGGTGCCATCCCTGGACAACCAGCCTTTGAATTT +
Preference number: 1 (lower is better)
Translates to: SDVDSRQPDGDVGRG*LVGGAIPGQPAFEF
Trigger: AAATTCAAAGGCTGGTTGTCCAGGGATGGCACCACCTACCAATCAGCCCCTTCCCACGTCCCCATCAGGCTGTCTGCTGTCTACATCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp GACAGCACACAGACAGACACGGATGCACTAGTTTCAGACACAACATaGACCTGTGTGGAAGGAGACAGGTGCCCCTGGAAGGAACAGCAG +
Preference number: 1 (lower is better)
Translates to: DSTQTDTDALVSDTT*TCVEGDRCPWKEQQ
Trigger: CTGCTGTTCCTTCCAGGGGCACCTGTCTCCTTCCACACAGGTCCATGTTGTGTCTGAAACTAGTGCATCCGTGTCTGTCTGTGTGCTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp CCAACACCCCTGGCTTGCTTACCCAGCCATTTTTCAGTAGCTACATaGGTGATCACAGAACACTGGGTGGCATTCAGCACACAAACACAG +
Preference number: 1 (lower is better)
Translates to: PTPLACLPSHFSVAT*VITEHWVAFSTQTQ
Trigger: CTGTGTTTGTGTGCTGAATGCCACCCAGTGTTCTGTGATCACCCATGTAGCTACTGAAAAATGGCTGGGTAAGCAAGCCAGGGGTGTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp AGGCTTGTTCTCAACCTAGATGTTAGAAATGCTTCTTGCTATGTCTaGGGAGGGGGAGGGGAGAGGCATGTTGATCTCTCTCCTGACCTC +
Preference number: 1 (lower is better)
Translates to: RLVLNLDVRNASCYV*GGGGERHVDLSPDL
Trigger: GAGGTCAGGAGAGAGATCAACATGCCTCTCCCCTCCCCCTCCCCAGACATAGCAAGAAGCATTTCTAACATCTAGGTTGAGAACAAGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp GTGGCTCCCAGAAGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTaGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCAACCATGGGT +
Preference number: 1 (lower is better)
Translates to: VAPRRLKVRVGLDLV*KVDLKFKFSLPTMG
Trigger: ACCCATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCTTCTGGGAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 90 bp GTGCAAGAGGGAACATCAATCAGATTACGGAGTCGATGGGAAATATaGGGATTAGATTTGCGGCTGTCGTTACCTTTCTCAGGGCCAGCA +
Preference number: 1 (lower is better)
Translates to: VQEGTSIRLRSRWEI*GLDLRLSLPFSGPA
Trigger: TGCTGGCCCTGAGAAAGGTAACGACAGCCGCAAATCTAATCCGCATATTTCCCATCGACTCCGTAATCTGATTGATGTTCCCTCTTGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 90 bp TATTATTCAGTGCAAGAGGGAACATCAATCAGATTACGGAGTCGATaGGAAATATGCGGATTAGATTTGCGGCTGTCGTTACCTTTCTCA +
Preference number: 1 (lower is better)
Translates to: YYSVQEGTSIRLRSR*EICGLDLRLSLPFS
Trigger: TGAGAAAGGTAACGACAGCCGCAAATCTAATCCGCATATTTCCCATCGACTCCGTAATCTGATTGATGTTCCCTCTTGCACTGAATAATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 90 bp TTATTTTATAAAATGGCTTACCTGAGAGAGGCATGTATTATTCAGTaGAAGAGGGAACATCAATCAGATTACGGAGTCGATGGGAAATAT +
Preference number: 1 (lower is better)
Translates to: LFYKMAYLREACIIQ*KREHQSDYGVDGKY
Trigger: ATATTTCCCATCGACTCCGTAATCTGATTGATGTTCCCTCTTGCACTGAATAATACATGCCTCTCTCAGGTAAGCCATTTTATAAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp CAGCCCATGCCACCCTCAGATGTAGACAGCAGACAGCCTGATGGGGACGTGGGAGGCAGGCGCTGGGGCTaGGGGCTCAGCCCTAGCCTG +
Preference number: 2 (lower is better)
Translates to: QPMPPSDVDSRQPDGDVGGRRWG*GLSPSL
Trigger: CAGGCTAGGGCTGAGCCCCCAGCCCCAGCGCCTGCC...TCCCACGTCCCCATCAGGCTGTCTGCTGTCTACATCTGAGGGTGGCATGGGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp GCTTGTGGTCCTGAACGGACAGCTCCCACCCCACCCGTCTGGGTGCAAGTGGTCGCTCTGGGCCTCGCCTaGTGGTGGCTCCCAGAAGGC +
Preference number: 2 (lower is better)
Translates to: ACGPERTAPTPPVWVQVVALGLA*WWLPEG
Trigger: GCCTTCTGGGAGCCACCACCAGGCGAGGCCCAGAGC...GACCACTTGCACCCAGACGGGTGGGGTGGGAGCTGTCCGTTCAGGACCACAAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp CAGGAGTGGATGGCAGGACCCACCCCGGCCAGCAGGCTCCACATGAGAGGTTTCAGGAAGAAGGGTGGGTaGCAAGGCCCTGTGTCCTGG +
Preference number: 2 (lower is better)
Translates to: QEWMAGPTPASRLHMRGFRKKGG*QGPVSW
Trigger: CCAGGACACAGGGCCTTGGCACCCACCCTTCTTCCT...GAAACCTCTCATGTGGAGCCTGCTGGCCGGGGTGGGTCCTGCCATCCACTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp CTGGGGCTGGTGGCAGGGGTTGGCAGGAGTACACCGGGCATAGCCGGCTCTGGGCCAACACCCCTGGCTTaGTTACCCAGCCATTTTTCA +
Preference number: 2 (lower is better)
Translates to: LGLVAGVGRSTPGIAGSGPTPLA*LPSHFS
Trigger: TGAAAAATGGCTGGGTAAGCAAGCCAGGGGTGTTGG...CCCAGAGCCGGCTATGCCCGGTGTACTCCTGCCAACCCCTGCCACCAGCCCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp GCATTTCGTCCCCCTCCTCAGAAGGCCCAGAAGGGGGTACTCATGCCTACTTTCAGGCCGGTGGCAGGTTaGGGCTGCTGCTGGGCTTGT +
Preference number: 2 (lower is better)
Translates to: AFRPPPQKAQKGVLMPTFRPVAG*GCCWAC
Trigger: ACAAGCCCAGCAGCAGCCCCAACCTGCCACCGGCCT...GAAAGTAGGCATGAGTACCCCCTTCTGGGCCTTCTGAGGAGGGGGACGAAATGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTGGTGAGGAGCAGTCCTaGGGTAGAGCTGCTGAGGGG +
Preference number: 2 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVGEEQS*GRAAEG
Trigger: CCCCTCAGCAGCTCTACCCCAGGACTGCTCCTCACC...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTGCTTCTTGCTATGTCTaGGGAGGGGGAGGGGAGAGG +
Preference number: 2 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVASCYV*GGGGER
Trigger: CCTCTCCCCTCCCCCTCCCCAGACATAGCAAGAAGC...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 90 bp GGCCAGCAAAGTGCCAAGTGTGAACACAGTGACGGAGAGGAGGGCTaGGCACAGACTCCAGTAAGGGGCAGGGCAAGAGCTAGATGTCAG +
Preference number: 2 (lower is better)
Translates to: GQQSAKCEHSDGEEG*AQTPVRGRARARCQ
Trigger: CTGACATCTAGCTCTTGCCCTGCCCCTTACTGGAGTCTGTGCCAAGCCCTCCTCTCCGTCACTGTGTTCACACTTGGCACTTTGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp GTGAAAAATGCCGTGGGAGACCATTCCCACGGACTGTGGATCAGGTCTCGGTATAGACAGCAGACAGCCTaGTGGGGACGTGGGAAGGGG +
Preference number: 2 (lower is better)
Translates to: VKNAVGDHSHGLWIRSRYRQQTA*WGRGKG
Trigger: CCCCTTCCCACGTCCCCATCAGGCTGTCTGCTGTCT...ATACCGAGACCTGATCCACAGTCCGTGGGAATGGTCTCCCACGGCATTTTTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTGCCTTGAGTCATTCCTaGGGGGAGGGGAGAAGAGAG +
Preference number: 2 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVALSHS*GEGRRE
Trigger: CTCTCTTCTCCCCTCCCCCCAGGAATGACTCAAGGC...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp TGTCCTTCCCCCTCACTGCCCACAAGACAACCCCTTGGCCTCAGGTCCCAGGGCTCCTCTCAGAACCACTaGGCTGAAGTAGCTTTGGAA +
Preference number: 2 (lower is better)
Translates to: CPSPSLPTRQPLGLRSQGSSQNH*AEVALE
Trigger: TTCCAAAGCTACTTCAGCCCAGTGGTTCTGAGAGGA...GCCCTGGGACCTGAGGCCAAGGGGTTGTCTTGTGGGCAGTGAGGGGGAAGGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTGAGGGAGTATGGCTGTaGAAAATGCCGTGGGAGACC +
Preference number: 2 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVEGVWL*KMPWET
Trigger: GGTCTCCCACGGCATTTTTCACAGCCATACTCCCTC...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp TTTCTCAGGGCCAGCAAAGTGCCAAGTGTGAACACAGTGACGGAGAGGAGGGCTTGCACCACAGAGCAGTaGCCAGGGAACTGTGCAGAC +
Preference number: 2 (lower is better)
Translates to: FLRASKVPSVNTVTERRACTTEQ*PGNCAD
Trigger: GTCTGCACAGTTCCCTGGTCACTGCTCTGTGGTGCA...AGCCCTCCTCTCCGTCACTGTGTTCACACTTGGCACTTTGCTGGCCCTGAGAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp TTACACACCCTCAAGATCTGGTGGCCCCTCATCAGAGCTCACTGGAATGACTGTGACAACCAGGCTGTGTaGGTGTGCGTGTGCAGGGGC +
Preference number: 2 (lower is better)
Translates to: LHTLKIWWPLIRAHWNDCDNQAV*VCVCRG
Trigger: GCCCCTGCACACGCACACGCACACAGCCTGGTTGTC...ACAGTCATTCCAGTGAGCTCTGATGAGGGGCCACCAGATCTTGAGGGTGTGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTCAGAGGCAGAAGCATTaGGGTGTGCTCTGCCCTCTA +
Preference number: 2 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVQRQKH*GVLCPL
Trigger: TAGAGGGCAGAGCACACCCCAATGCTTCTGCCTCTG...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp TCCCAGAAGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTCAGGAAGGCCAAGGGTaGGGTGAGGAGCAGTCCTGG +
Preference number: 2 (lower is better)
Translates to: SQKAKSKGGARSGLESRFQEGQG*GEEQSW
Trigger: CCAGGACTGCTCCTCACCTCACCCTTGGCCTTCCTG...AAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCTTCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp TCCCAGAAGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGTGTGCGTGTGCGTGTaGAGGGGCCATGGCCTTGAG +
Preference number: 2 (lower is better)
Translates to: SQKAKSKGGARSGLESRFVCVCV*RGHGLE
Trigger: CTCAAGGCCATGGCCCCTGCACACGCACACGCACAC...AAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCTTCTGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp TGCGGCTGTCGTTACCTTTCTCAGGGCCAGCAAAGTGCCAAGTGTGAACACAGTCCTCCCCAACACCCCTaGCTTGCTTACCCAGCCATT +
Preference number: 2 (lower is better)
Translates to: CGCRYLSQGQQSAKCEHSPPQHP*LAYPAI
Trigger: AATGGCTGGGTAAGCAAGCCAGGGGTGTTGGGGAGG...ACTGTGTTCACACTTGGCACTTTGCTGGCCCTGAGAAAGGTAACGACAGCCGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp CAGCCCATGCCACCCTCAGATGTAGACAGCAGACAGCCTGATGGGGACGTGGGATGGACAACCAGCCTTTaGATTTCAGAGACTCCACTT +
Preference number: 2 (lower is better)
Translates to: QPMPPSDVDSRQPDGDVGWTTSL*ISETPL
Trigger: AAGTGGAGTCTCTGAAATTCAAAGGCTGGTTGTCCA...TCCCACGTCCCCATCAGGCTGTCTGCTGTCTACATCTGAGGGTGGCATGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp CAGCACACAGACAGACACGGATGCACTAGTTTCAGACACAACATGGACCTGTGTCTGAGACCGAGCACGTaGGACCCCCACTTGAAGCCT +
Preference number: 2 (lower is better)
Translates to: QHTDRHGCTSFRHNMDLCLRPST*DPHLKP
Trigger: AGGCTTCAAGTGGGGGTCTCACGTGCTCGGTCTCAG...ACACAGGTCCATGTTGTGTCTGAAACTAGTGCATCCGTGTCTGTCTGTGTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp GTGAAAAATGCCGTGGGAGACCATTCCCACGGACTGTGGATCAGGTCTCGGTATGAGAAGAGCCGGGACTaGTTCAAGTGCACAAGGAGG +
Preference number: 2 (lower is better)
Translates to: VKNAVGDHSHGLWIRSRYEKSRD*FKCTRR
Trigger: CCTCCTTGTGCACTTGAAGCAGTCCCGGCTCTTCTC...ATACCGAGACCTGATCCACAGTCCGTGGGAATGGTCTCCCACGGCATTTTTCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp GGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCGTGGAAGGAGACAGGTaGCCCTGGAAGGAACAGCAG +
Preference number: 2 (lower is better)
Translates to: GGARSGLESRFEVQVLSPVEGDR*PWKEQQ
Trigger: CTGCTGTTCCTTCCAGGGGCACCTGTCTCCTTCCAC...GGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp TTTCTCAGGGCCAGCAAAGTGCCAAGTGTGAACACAGTGACGGAGAGGAGGGCTGTGACCAGGGAACTGTaGAGACACCCACAAGAACAG +
Preference number: 2 (lower is better)
Translates to: FLRASKVPSVNTVTERRAVTREL*RHPQEQ
Trigger: CTGTTCTTGTGGGTGTCTGCACAGTTCCCTGGTCAC...AGCCCTCCTCTCCGTCACTGTGTTCACACTTGGCACTTTGCTGGCCCTGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp GCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCAACCATCCGCAGATCCAAGGATaGCACAACCCGGCGGGCGCT +
Preference number: 2 (lower is better)
Translates to: ARSGLESRFEVQVLSPNHPQIQG*HNPAGA
Trigger: AGCGCCCGCCGGGTTGTGGCATCCTTGGATCTGCGG...ATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp CCAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTGTTAGAAATGCTTCTTaGTATGTCTGGGGAGGGGGA +
Preference number: 2 (lower is better)
Translates to: PGCCRTPSAEANTVSTVRVRNAS*YVWGGG
Trigger: TCCCCCTCCCCAGACATAGCAAGAAGCATTTCTAAC...ACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTAGTAGCTTTGGAAGCTaGAAGGGAATAACAGGTCCC +
Preference number: 2 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVSSFGS*KGITGP
Trigger: GGGACCTGTTATTCCCTTTCAGCTTCCAAAGCTACT...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp GCATTTCGTCCCCCTCCTCAGAAGGCCCAGAAGGGGGTACTCATGCCTACTTTCACTCCCAAAGAGGTCTaGAAACAAGGACAAATGGGT +
Preference number: 2 (lower is better)
Translates to: AFRPPPQKAQKGVLMPTFTPKEV*KQGQMG
Trigger: ACCCATTTGTCCTTGTTTGCAGACCTCTTTGGGAGT...GAAAGTAGGCATGAGTACCCCCTTCTGGGCCTTCTGAGGAGGGGGACGAAATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp TCCCAGAAGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTCCTCTGGTCTCTCATTaGCAGAGGGAGGAAGAAGGG +
Preference number: 2 (lower is better)
Translates to: SQKAKSKGGARSGLESRFPLVSH*QREEEG
Trigger: CCCTTCTTCCTCCCTCTGGCAATGAGAGACCAGAGG...AAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCTTCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp CAGCACACAGACAGACACGGATGCACTAGTTTCAGACACAACATGGACCTGTGTTTAAGTGTCTGCAGCTaGAGACGAGCCAGGCAGTGC +
Preference number: 2 (lower is better)
Translates to: QHTDRHGCTSFRHNMDLCLSVCS*RRARQC
Trigger: GCACTGCCTGGCTCGTCTGCAGCTGCAGACACTTAA...ACACAGGTCCATGTTGTGTCTGAAACTAGTGCATCCGTGTCTGTCTGTGTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTTCTGGAAAGTCGATTTaGAGTTCAAGTTCTCTCTCC +
Preference number: 2 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVSGKSI*SSSSLS
Trigger: GGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGA...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp GCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCAACCATGGAGACAGGTGCCCCTaGAAGGAACAGCAGGTGGAA +
Preference number: 2 (lower is better)
Translates to: ARSGLESRFEVQVLSPNHGDRCP*KEQQVE
Trigger: TTCCACCTGCTGTTCCTTCCAGGGGCACCTGTCTCC...ATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp AGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTGGTATCCAAATTCTTATCCTGTCCCTGGCACCGTaGGTGCCGCAGGGGAGAGGA +
Preference number: 2 (lower is better)
Translates to: RVTLIPSIKLRTGIQILILSLAP*VPQGRG
Trigger: TCCTCTCCCCTGCGGCACCCACGGTGCCAGGGACAG...GATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 90 bp AGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTaGAAGTTCAAGTTCTCTCTCCCAACCATGGGTACCATTCAGGCT +
Preference number: 2 (lower is better)
Translates to: RLKVRVGLDLVWKVD*KFKFSLPTMGTIQA
Trigger: AGCCTGAATGGTACCCATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp GCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCAACCATTTGTGCCCCATGAAATaGAGGAGTGGATGGCAGGAC +
Preference number: 2 (lower is better)
Translates to: ARSGLESRFEVQVLSPNHLCPMK*RSGWQD
Trigger: GTCCTGCCATCCACTCCTGCATTTCATGGGGCACAA...ATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp TTACACACCCTCAAGATCTGGTGGCCCCTCATCAGAGCTCACTGGAATGACTGTAGTCGATGGGAAATATaGGGATTAGATTTGCGGCTG +
Preference number: 2 (lower is better)
Translates to: LHTLKIWWPLIRAHWNDCSRWEI*GLDLRL
Trigger: CAGCCGCAAATCTAATCCGCATATTTCCCATCGACT...ACAGTCATTCCAGTGAGCTCTGATGAGGGGCCACCAGATCTTGAGGGTGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 90 bp ACATCAATCAGATTACGGAGTCGATGGGAAATATGCGGATTAGATTaGCGGCTGTCGTTACCTTTCTCAGGGCCAGCAAAGTGCCAAGTG +
Preference number: 2 (lower is better)
Translates to: TSIRLRSRWEICGLD*RLSLPFSGPAKCQV
Trigger: CACTTGGCACTTTGCTGGCCCTGAGAAAGGTAACGACAGCCGCAAATCTAATCCGCATATTTCCCATCGACTCCGTAATCTGATTGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp AGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCGTTTCTAGAAAGACTTaGCAGCCTCCTGCTAGTCAG +
Preference number: 2 (lower is better)
Translates to: RLKVRVGLDLVWKVDLKFVSRKT*QPPASQ
Trigger: CTGACTAGCAGGAGGCTGGCAAGTCTTTCTAGAAAC...GAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 90 bp TCTCTCTCTGTCTCTCTCTCTCTCTCTTTCTCACGAAATTCTGCATaGTCAAAGCTGATGCTGCCTGCTTTAGCTAGGTATGCCCAGGAT +
Preference number: 2 (lower is better)
Translates to: SLSVSLSLSFSRNSA*SKLMLPALARYAQD
Trigger: ATCCTGGGCATACCTAGCTAAAGCAGGCAGCATCAGCTTTGACAATGCAGAATTTCGTGAGAAAGAGAGAGAGAGAGAGACAGAGAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR GCA 90 bp AGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTGGTATCCAAATTCTTATCGTCCTTCCCCCTCACTaGCCACAAGACAACCCCTTG +
Preference number: 2 (lower is better)
Translates to: RVTLIPSIKLRTGIQILIVLPPH*PQDNPL
Trigger: CAAGGGGTTGTCTTGTGGGCAGTGAGGGGGAAGGAC...GATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp AGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTGGTATCCAAATTCTTATCCATGAAATGCAGGAGTaGATGGCAGGACCCACCCCG +
Preference number: 2 (lower is better)
Translates to: RVTLIPSIKLRTGIQILIHEMQE*MAGPTP
Trigger: CGGGGTGGGTCCTGCCATCCACTCCTGCATTTCATG...GATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CCA 90 bp AGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTGGTATCCAAATTCTTATCACCCTCAAGATCTGGTaGCCCCTCATCAGAGCTCAC +
Preference number: 2 (lower is better)
Translates to: RVTLIPSIKLRTGIQILITLKIW*PLIRAH
Trigger: GTGAGCTCTGATGAGGGGCCACCAGATCTTGAGGGT...GATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 90 bp TTGGGCTTTTGTTTCTCCTCAATGACTTGTTCCCTTTTGAACAAATaGCACGTAAGTCCACTGCGCACAGAAGCAATACATTTCCCATTG +
Preference number: 2 (lower is better)
Translates to: LGFCFSSMTCSLLNK*HVSPLRTEAIHFPL
Trigger: CAATGGGAAATGTATTGCTTCTGTGCGCAGTGGACTTACGTGCAATTTGTTCAAAAGGGAACAAGTCATTGAGGAGAAACAAAAGCCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR TCA 90 bp AGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTGGTATCCAAATTCTTATCAAAACCTGCTCCTGTTaGGGAATTAAGTGTCTGCAG +
Preference number: 2 (lower is better)
Translates to: RVTLIPSIKLRTGIQILIKTCSC*GIKCLQ
Trigger: CTGCAGACACTTAATTCCTCAACAGGAGCAGGTTTT...GATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp TGTGGTCCTGAACGGACAGCTCCCACCCCACCCGTCTaGGTGCAAGTGGTCTGGGGTCCGCATTGGCAGGGG +
Preference number: 3 (lower is better)
Translates to: CGPERTAPTPPV*VQVVWGPHWQG
Trigger: CCCCTGCCAATGCGGACCCCAGACCACTTGCACCCAGACGGGTGGGGTGGGAGCTGTCCGTTCAGGACCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CAA 90 bp CCTGTCCTTCCCCCTCACTGCCCACAAGACAACCCCTTGGCCTCAGGTCCCAGGGGGCTGCTGCTGGGCTaGTGCCCCATGAAATGCAGG +
Preference number: 3 (lower is better)
Translates to: PVLPPHCPQDNPLASGPRGLLLG*CPMKCR
Trigger: CCTGCATTTCATGGGGCACAAGCCCAGCAGCAGCCC...CCTGGGACCTGAGGCCAAGGGGTTGTCTTGTGGGCAGTGAGGGGGAAGGACAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp TGGGGTGTGCTCTGCCCTCTAAGCCAGGGCAGAGGATaGCTTGTGGTCCTGAACGGACAGCTCCCACCCCAC +
Preference number: 3 (lower is better)
Translates to: WGVLCPLSQGRG*LVVLNGQLPPH
Trigger: GTGGGGTGGGAGCTGTCCGTTCAGGACCACAAGCCATCCTCTGCCCTGGCTTAGAGGGCAGAGCACACCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 72 bp GACAGCAGACAGCCTGATGGGGACGTGGGAAGGGGCTaGTTGGTAGGTGGTGCCATCCCTGGACAACCAGCC +
Preference number: 3 (lower is better)
Translates to: DSRQPDGDVGRG*LVGGAIPGQPA
Trigger: GGCTGGTTGTCCAGGGATGGCACCACCTACCAATCAGCCCCTTCCCACGTCCCCATCAGGCTGTCTGCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 72 bp AGGACAAATGGGTGGTCCAGGAAGCCGCACCAGCCCTaGGGCACACAGGCAGCCGACCCATCAGGAAACTTA +
Preference number: 3 (lower is better)
Translates to: RTNGWSRKPHQP*GTQAADPSGNL
Trigger: TAAGTTTCCTGATGGGTCGGCTGCCTGTGTGCCTCAGGGCTGGTGCGGCTTCCTGGACCACCCATTTGTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 72 bp CTGCTTCAAGTGCACAAGGAGGACAACCAGGCTGTGTaGGTGTGCGTGTGCAGGGGCCATGGCCTTGAGTCA +
Preference number: 3 (lower is better)
Translates to: LLQVHKEDNQAV*VCVCRGHGLES
Trigger: TGACTCAAGGCCATGGCCCCTGCACACGCACACGCACACAGCCTGGTTGTCCTCCTTGTGCACTTGAAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp GCTTACAATTCAAGTGAGCTCTCAGCCCCTAGGGCCTaGGAGCCTCCGTGGCAGCTCTACCACCCTAATGCC +
Preference number: 3 (lower is better)
Translates to: AYNSSELSAPRA*EPPWQLYHPNA
Trigger: GGCATTAGGGTGGTAGAGCTGCCACGGAGGCTCCCAGGCCCTAGGGGCTGAGAGCTCACTTGAATTGTAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 72 bp AAAAAGCCACTGCTGGACAACGGGTGGAGCACAGCCTaGTCCGCACCCTCAGAGAGGATGCACCACAGAGCA +
Preference number: 3 (lower is better)
Translates to: KKPLLDNGWSTA*SAPSERMHHRA
Trigger: TGCTCTGTGGTGCATCCTCTCTGAGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTGGCTTTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 72 bp AGGTCTCGGTATTCTCTAGCGCTGAGACCGAGCACGTaGGACCCCCACTTGAAGCCTCTGGTCTCTCATTGC +
Preference number: 3 (lower is better)
Translates to: RSRYSLALRPST*DPHLKPLVSHC
Trigger: GCAATGAGAGACCAGAGGCTTCAAGTGGGGGTCTCACGTGCTCGGTCTCAGCGCTAGAGAATACCGAGACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR TCA 72 bp ACGCGTCAGACCAAGGGAGCAAGGGACACACCACCCTaGGGAACATGCAAACACAGAAGATCCCCGCAGATC +
Preference number: 3 (lower is better)
Translates to: TRQTKGARDTPP*GTCKHRRSPQI
Trigger: GATCTGCGGGGATCTTCTGTGTTTGCATGTTCCTCAGGGTGGTGTGTCCCTTGCTCCCTTGGTCTGACGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 72 bp ACATGCAAACACAGAAGATCCCCGCAGATCCAAGGATaGCACAACCCGGCGGGCGCTGAGGAAGCACAATTA +
Preference number: 3 (lower is better)
Translates to: TCKHRRSPQIQG*HNPAGAEEAQL
Trigger: TAATTGTGCTTCCTCAGCGCCCGCCGGGTTGTGGCATCCTTGGATCTGCGGGGATCTTCTGTGTTTGCATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 72 bp GGTGGAAAACCTGCTCCTGTTGAGGAATTAAGTGTCTaGAGCTGCAGACGAGCCAGGCAGTGCGTAGGTTTC +
Preference number: 3 (lower is better)
Translates to: GGKPAPVEELSV*SCRRARQCVGF
Trigger: GAAACCTACGCACTGCCTGGCTCGTCTGCAGCTGCAGACACTTAATTCCTCAACAGGAGCAGGTTTTCCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 72 bp GCGCTGAGGAAGCACAATTATCTAAGAAAAAGCCACTaGTGGACAACGGGTGGAGCACAGCCTGATCCGCAC +
Preference number: 3 (lower is better)
Translates to: ALRKHNYLRKSH*WTTGGAQPDPH
Trigger: GTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTGGCTTTTTCTTAGATAATTGTGCTTCCTCAGCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp CAGACAGACACGGATGCACTAGTTTCAGACACAACATaGACCTGTGTGGAAGGAGACAGGTGCCCCTGGAAG +
Preference number: 3 (lower is better)
Translates to: QTDTDALVSDTT*TCVEGDRCPWK
Trigger: CTTCCAGGGGCACCTGTCTCCTTCCACACAGGTCCATGTTGTGTCTGAAACTAGTGCATCCGTGTCTGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR-3UTR CAA 90 bp CTCTCTCTCTTTCTCACGAAATTCTGCATTGTCAAAGCTGATGCTGCCTGCTTTGAGAAGGGGGTGTCCTaGGGGGCCAGAGAAGAGCCG +
Preference number: 3 (lower is better)
Translates to: LSLFLTKFCIVKADAACFEKGVS*GAREEP
Trigger: CGGCTCTTCTCTGGCCCCCAAGGACACCCCCTTCTC...AAAGCAGGCAGCATCAGCTTTGACAATGCAGAATTTCGTGAGAAAGAGAGAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp CTGAGGAAGCACAATTATCTAAGAAAAAGCCACTGCTaGACAACGGGTGGAGCACAGCCTGATCCGCACCCT +
Preference number: 3 (lower is better)
Translates to: LRKHNYLRKSHC*TTGGAQPDPHP
Trigger: AGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTGGCTTTTTCTTAGATAATTGTGCTTCCTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp CTCAACCTAGATGTTAGAAATGCTTCTTGCTATGTCTaGGGAGGGGGAGGGGAGAGGCATGTTGATCTCTCT +
Preference number: 3 (lower is better)
Translates to: LNLDVRNASCYV*GGGGERHVDLS
Trigger: AGAGAGATCAACATGCCTCTCCCCTCCCCCTCCCCAGACATAGCAAGAAGCATTTCTAACATCTAGGTTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp AGAAGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTaGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCA +
Preference number: 3 (lower is better)
Translates to: RRLKVRVGLDLV*KVDLKFKFSLP
Trigger: TGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp GTGCAAGAGGGAACATCAATCAGATTACGGAGTCGATaGGAAATATGCGGATTAGATTTGCGGCTGTCGTTA +
Preference number: 3 (lower is better)
Translates to: VQEGTSIRLRSR*EICGLDLRLSL
Trigger: TAACGACAGCCGCAAATCTAATCCGCATATTTCCCATCGACTCCGTAATCTGATTGATGTTCCCTCTTGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR GCA 72 bp GGAACATCAATCAGATTACGGAGTCGATGGGAAATATaGGGATTAGATTTGCGGCTGTCGTTACCTTTCTCA +
Preference number: 3 (lower is better)
Translates to: GTSIRLRSRWEI*GLDLRLSLPFS
Trigger: TGAGAAAGGTAACGACAGCCGCAAATCTAATCCGCATATTTCCCATCGACTCCGTAATCTGATTGATGTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp AGCAAGGATACCAGTATAAATAGTGCACTTCCAGAATaGCTGATGGGTGTGGTTTACCCCTTTGATACTCAA +
Preference number: 3 (lower is better)
Translates to: SKDTSINSALPE*LMGVVYPFDTQ
Trigger: TTGAGTATCAAAGGGGTAAACCACACCCATCAGCCATTCTGGAAGTGCACTATTTATACTGGTATCCTTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CCA 72 bp CAGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTaGTATCCAAATTCTTATCTCCTTCCATATAACCTT +
Preference number: 3 (lower is better)
Translates to: QSDPNSFYQAQN*YPNSYLLPYNL
Trigger: AAGGTTATATGGAAGGAGATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp GGGGGAGGGGAGAAGAGAGACGATGGGTCACCGCACAAGCAGGGTGGGCAGGCGCAGCGCACAGGTGCGTaGGGCGCGGCCGGCCAGCAT +
Preference number: 4 (lower is better)
Translates to: GGGEKRDDGSPHKQGGQAQRTGA*GAAGQH
Trigger: ATGCTGGCCGGCCGCGCCGCACGCACCTGTGCGCTG...CGCCTGCCCACCCTGCTTGTGCGGTGACCCATCGTCTCTCTTCTCCCCTCCCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp CTGGGGCTGGTGGCAGGGGTTGGCAGGAGTACACCGGGCATAGCCGGCTCTGGGGTCGGCCCGAAATCTTaGGCCCCACTGCCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: LGLVAGVGRSTPGIAGSGVGPKS*APLPRR
Trigger: CCTCCTGGGCAGTGGGGCCCAAGATTTCGGGCCGAC...CCCAGAGCCGGCTATGCCCGGTGTACTCCTGCCAACCCCTGCCACCAGCCCCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp GGGGGAGGGGAGAAGAGAGACGATGGGTCACCGCACAAGCAGGGTGGGCAGGCGGCACCGAAGTGCAGATaGAGCGGGTCGGCCCGAAAT +
Preference number: 4 (lower is better)
Translates to: GGGEKRDDGSPHKQGGQAAPKCR*SGSARN
Trigger: ATTTCGGGCCGACCCGCTTCATCTGCACTTCGGTGC...CGCCTGCCCACCCTGCTTGTGCGGTGACCCATCGTCTCTCTTCTCCCCTCCCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp GGGGGAGGGGAGAAGAGAGACGATGGGTCACCGCACAAGCAGGGTGGGCAGGCGACTCAGCCCAGGCGATaGCATTGCCAGAGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: GGGEKRDDGSPHKQGGQATQPRR*HCQREP
Trigger: AGGCTCTCTCTGGCAATGTCATCGCCTGGGCTGAGT...CGCCTGCCCACCCTGCTTGTGCGGTGACCCATCGTCTCTCTTCTCCCCTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp GGGGGAGGGGAGAAGAGAGACGATGGGTCACCGCACAAGCAGGGTGGGCAGGCGAGCTCGCTGATCCGTTaGTGTAGGGAGGTCAAGGCG +
Preference number: 4 (lower is better)
Translates to: GGGEKRDDGSPHKQGGQASSLIR*CREVKA
Trigger: CGCCTTGACCTCCCTACACCAACGGATCAGCGAGCT...CGCCTGCCCACCCTGCTTGTGCGGTGACCCATCGTCTCTCTTCTCCCCTCCCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp GGGGGAGGGGAGAAGAGAGACGATGGGTCACCGCACAAGCAGGGTGGGCAGGCGTCTGCAGCAGATCCTTaGGGCTGTTGGTTTGGCTGG +
Preference number: 4 (lower is better)
Translates to: GGGEKRDDGSPHKQGGQASAADP*GCWFGW
Trigger: CCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGA...CGCCTGCCCACCCTGCTTGTGCGGTGACCCATCGTCTCTCTTCTCCCCTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp CACTGCTGGACAACGGGTGGAGCACAGCCTGATCCGCACCCTCAGAGAGGATGCACGGTCTCGCGGAGCTaGAGCACGTTGCTCCGAAGC +
Preference number: 4 (lower is better)
Translates to: HCWTTGGAQPDPHPQRGCTVSRS*STLLRS
Trigger: GCTTCGGAGCAACGTGCTGCAGCTCCGCGAGACCGT...GCATCCTCTCTGAGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp GCCAGAGAAGAGCCGGGACTGCTTCAAGTGCACAAGGAGGACAACCAGGCTGTGGACCCGAGTCCAGGGTaGTCTGGCTCTCGCAGCGGC +
Preference number: 4 (lower is better)
Translates to: AREEPGLLQVHKEDNQAVDPSPG*SGSRSG
Trigger: GCCGCTGCGAGAGCCAGAGCACCCTGGACTCGGGTC...CACAGCCTGGTTGTCCTCCTTGTGCACTTGAAGCAGTCCCGGCTCTTCTCTGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp GGGGGAGGGGAGAAGAGAGACGATGGGTCACCGCACAAGCAGGGTGGGCAGGCGAGAGAGCCTTGCTGCTaGAGGTGGCCAGGTTGTACA +
Preference number: 4 (lower is better)
Translates to: GGGEKRDDGSPHKQGGQAREPCC*RWPGCT
Trigger: TGTACAACCTGGCCACCTGCAGCAGCAAGGCTCTCT...CGCCTGCCCACCCTGCTTGTGCGGTGACCCATCGTCTCTCTTCTCCCCTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp GCTTGTGGTCCTGAACGGACAGCTCCCACCCCACCCGTCTGGGTGCAAGTGGTCAAAGTTTGCCCGAGTTaGCTGAGCGTCTCCGCGGCC +
Preference number: 4 (lower is better)
Translates to: ACGPERTAPTPPVWVQVVKVCPS*LSVSAA
Trigger: GGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTT...GACCACTTGCACCCAGACGGGTGGGGTGGGAGCTGTCCGTTCAGGACCACAAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp CAGGAGTGGATGGCAGGACCCACCCCGGCCAGCAGGCTCCACATGAGAGGTTTCCCTTGCTGCTGCAGGTaGCCAGGTTGTACACCTCCC +
Preference number: 4 (lower is better)
Translates to: QEWMAGPTPASRLHMRGFPCCCR*PGCTPP
Trigger: GGGAGGTGTACAACCTGGCCACCTGCAGCAGCAAGG...GAAACCTCTCATGTGGAGCCTGCTGGCCGGGGTGGGTCCTGCCATCCACTCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp CACTGCTGGACAACGGGTGGAGCACAGCCTGATCCGCACCCTCAGAGAGGATGCCAGAGAGAGCCTTGCTaGTGCAGGTGGCCAGGTTGT +
Preference number: 4 (lower is better)
Translates to: HCWTTGGAQPDPHPQRGCQREPC*CRWPGC
Trigger: ACAACCTGGCCACCTGCAGCAGCAAGGCTCTCTCTG...GCATCCTCTCTGAGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp TGTCCTTCCCCCTCACTGCCCACAAGACAACCCCTTGGCCTCAGGTCCCAGGGCAGGCGCTCTCGATCTTaGCCCTTTCCTCTGTGTCGT +
Preference number: 4 (lower is better)
Translates to: CPSPSLPTRQPLGLRSQGRRSRS*PFPLCR
Trigger: ACGACACAGAGGAAAGGGCCAAGATCGAGAGCGCCT...GCCCTGGGACCTGAGGCCAAGGGGTTGTCTTGTGGGCAGTGAGGGGGAAGGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp CTGGGGCTGGTGGCAGGGGTTGGCAGGAGTACACCGGGCATAGCCGGCTCTGGGGTAGTTGGTCCGCAGTaGGAATGTCAGCTGAAACTT +
Preference number: 4 (lower is better)
Translates to: LGLVAGVGRSTPGIAGSGVVGPQ*ECQLKL
Trigger: AAGTTTCAGCTGACATTCCCACTGCGGACCAACTAC...CCCAGAGCCGGCTATGCCCGGTGTACTCCTGCCAACCCCTGCCACCAGCCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp CACTGCTGGACAACGGGTGGAGCACAGCCTGATCCGCACCCTCAGAGAGGATGCCACCAGCACGCCCTGTaGTTTGATGGGGTGATAGGG +
Preference number: 4 (lower is better)
Translates to: HCWTTGGAQPDPHPQRGCHQHAL*FDGVIG
Trigger: CCCTATCACCCCATCAAACCACAGGGCGTGCTGGTG...GCATCCTCTCTGAGGGTGCGGATCAGGCTGTGCTCCACCCGTTGTCCAGCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp AGGGGGTACTCATGCCTACTTTCAATAAGGAAAAGCCACGGGCTCAGTGTCTCATTTGCCCGAGTTGGCTaGGCGTCTCCGCGGCCGGCG +
Preference number: 4 (lower is better)
Translates to: RGYSCLLSIRKSHGLSVSFARVG*ASPRPA
Trigger: CGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAA...TGAGACACTGAGCCCGTGGCTTTTCCTTATTGAAAGTAGGCATGAGTACCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp CCTGTCCTTCCCCCTCACTGCCCACAAGACAACCCCTTGGCCTCAGGTCCCAGGAGAGATTGCAAAGTTTaGCCGAGTTGGCTGAGCGTC +
Preference number: 4 (lower is better)
Translates to: PVLPPHCPQDNPLASGPRRDCKV*PSWLSV
Trigger: GACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCT...CCTGGGACCTGAGGCCAAGGGGTTGTCTTGTGGGCAGTGAGGGGGAAGGACAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp CCTGTCCTTCCCCCTCACTGCCCACAAGACAACCCCTTGGCCTCAGGTCCCAGGCGGGTTTTGAGAGATTaGAAAGTTTGCCCGAGTTGG +
Preference number: 4 (lower is better)
Translates to: PVLPPHCPQDNPLASGPRRVLRD*KVCPSW
Trigger: CCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCG...CCTGGGACCTGAGGCCAAGGGGTTGTCTTGTGGGCAGTGAGGGGGAAGGACAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp GCATTTCGTCCCCCTCCTCAGAAGGCCCAGAAGGGGGTACTCATGCCTACTTTCGGGCGATTGTCTTTCTaGCCTTTCTCCAGCTCGCTG +
Preference number: 4 (lower is better)
Translates to: AFRPPPQKAQKGVLMPTFGRLSF*PFSSSL
Trigger: CAGCGAGCTGGAGAAAGGTCAGAAAGACAATCGCCC...GAAAGTAGGCATGAGTACCCCCTTCTGGGCCTTCTGAGGAGGGGGACGAAATGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTTGCGGTCCCAGATGTTaGAATGGGCTAGCTCACCCA +
Preference number: 4 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVCGPRC*NGLAHP
Trigger: TGGGTGAGCTAGCCCATTTCAACATCTGGGACCGCA...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp CAGCACACAGACAGACACGGATGCACTAGTTTCAGACACAACATGGACCTGTGTGAGTCCAGGGTGCTCTaGCTCTCGCAGCGGCCAAGC +
Preference number: 4 (lower is better)
Translates to: QHTDRHGCTSFRHNMDLCESRVL*LSQRPS
Trigger: GCTTGGCCGCTGCGAGAGCCAGAGCACCCTGGACTC...ACACAGGTCCATGTTGTGTCTGAAACTAGTGCATCCGTGTCTGTCTGTGTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp CTCTCTCTCTTTCTCACGAAATTCTGCATTGTCAAAGCTGATGCTGCCTGCTTTTTGCCCGAGCCAGGCTaGTTGCGGCCGCCTCCCGAC +
Preference number: 4 (lower is better)
Translates to: LSLFLTKFCIVKADAACFLPEPG*LRPPPD
Trigger: GTCGGGAGGCGGCCGCAAGCAGCCTGGCTCGGGCAA...AAAGCAGGCAGCATCAGCTTTGACAATGCAGAATTTCGTGAGAAAGAGAGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp TTACACACCCTCAAGATCTGGTGGCCCCTCATCAGAGCTCACTGGAATGACTGTTGCCAGAGAGAGCCTTaGTGCTGCAGGTGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: LHTLKIWWPLIRAHWNDCCQREP*CCRWPG
Trigger: ACCTGGCCACCTGCAGCAGCAAGGCTCTCTCTGGCA...ACAGTCATTCCAGTGAGCTCTGATGAGGGGCCACCAGATCTTGAGGGTGTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp GCCAGAGAAGAGCCGGGACTGCTTCAAGTGCACAAGGAGGACAACCAGGCTGTGCCACAAATGCTTGGGTaGCATCAAACCCTCCACCTA +
Preference number: 4 (lower is better)
Translates to: AREEPGLLQVHKEDNQAVPQMLG*HQTLHL
Trigger: TAGGTGGAGGGTTTGATGCCACCCAAGCATTTGTGG...CACAGCCTGGTTGTCCTCCTTGTGCACTTGAAGCAGTCCCGGCTCTTCTCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp TTTCTCAGGGCCAGCAAAGTGCCAAGTGTGAACACAGTGACGGAGAGGAGGGCTCCAAAGATCTCGATCTaGGACTCAGCCCAGGCGATG +
Preference number: 4 (lower is better)
Translates to: FLRASKVPSVNTVTERRAPKISI*DSAQAM
Trigger: CATCGCCTGGGCTGAGTCCCAGATCGAGATCTTTGG...AGCCCTCCTCTCCGTCACTGTGTTCACACTTGGCACTTTGCTGGCCCTGAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp GGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCCCCGGGTGGTCCAGGTaGCACAGATGTGATGCCATT +
Preference number: 4 (lower is better)
Translates to: GGARSGLESRFEVQVLSPPGWSR*HRCDAI
Trigger: AATGGCATCACATCTGTGTCACCTGGACCACCCGGG...GGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp AGGGGGTACTCATGCCTACTTTCAATAAGGAAAAGCCACGGGCTCAGTGTCTCAGCACGCCCTGTGGTTTaGTGGGGTGATAGGGTGCCA +
Preference number: 4 (lower is better)
Translates to: RGYSCLLSIRKSHGLSVSARPVV*WGDRVP
Trigger: TGGCACCCTATCACCCCATCAAACCACAGGGCGTGC...TGAGACACTGAGCCCGTGGCTTTTCCTTATTGAAAGTAGGCATGAGTACCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp GCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCAACCATCGCCCATCGTGTTCTTaGCCGAGCCAGGCTGCTTGC +
Preference number: 4 (lower is better)
Translates to: ARSGLESRFEVQVLSPNHRPSCS*PSQAAC
Trigger: GCAAGCAGCCTGGCTCGGGCAAGAACACGATGGGCG...ATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp GGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCTTTGGCTGGAAGAATTaGGGCGGCTGTACTGCTCGA +
Preference number: 4 (lower is better)
Translates to: GGARSGLESRFEVQVLSPFGWKN*GGCTAR
Trigger: TCGAGCAGTACAGCCGCCTCAATTCTTCCAGCCAAA...GGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp CAGCACACAGACAGACACGGATGCACTAGTTTCAGACACAACATGGACCTGTGTGCCACATGCACACGGTaGAGGCATACATCTCTGGCA +
Preference number: 4 (lower is better)
Translates to: QHTDRHGCTSFRHNMDLCATCTR*RHTSLA
Trigger: TGCCAGAGATGTATGCCTTCACCGTGTGCATGTGGC...ACACAGGTCCATGTTGTGTCTGAAACTAGTGCATCCGTGTCTGTCTGTGTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp TTACACACCCTCAAGATCTGGTGGCCCCTCATCAGAGCTCACTGGAATGACTGTGATGGGGTGATAGGGTaGCAAGTTCTCTCCATTGCC +
Preference number: 4 (lower is better)
Translates to: LHTLKIWWPLIRAHWNDCDGVIG*QVLSIA
Trigger: GGCAATGGAGAGAACTTGGCACCCTATCACCCCATC...ACAGTCATTCCAGTGAGCTCTGATGAGGGGCCACCAGATCTTGAGGGTGTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp ATGCTGCCTGCTTTAGCTAGGTATGCCCAGGATATAGTGGGGCCCCTAGAGAGATCTCCAGTCGGGTTTTaGGAGATTGCAAAGTTTGCC +
Preference number: 4 (lower is better)
Translates to: MLPALARYAQDIVGPLERSPVGF*EIAKFA
Trigger: GGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGA...TCTCTCTAGGGGCCCCACTATATCCTGGGCATACCTAGCTAAAGCAGGCAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp GTGAAAAATGCCGTGGGAGACCATTCCCACGGACTGTGGATCAGGTCTCGGTATGGCTCTTCTTCACCTTaGCATACATGTAGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: VKNAVGDHSHGLWIRSRYGSSSP*HTCSWS
Trigger: GGACCAACTACATGTATGCCAAGGTGAAGAAGAGCC...ATACCGAGACCTGATCCACAGTCCGTGGGAATGGTCTCCCACGGCATTTTTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp ATGCTGCCTGCTTTAGCTAGGTATGCCCAGGATATAGTGGGGCCCCTAGAGAGAGAAGGCATACATCTCTaGCAGGCTCTTCTTCACCTT +
Preference number: 4 (lower is better)
Translates to: MLPALARYAQDIVGPLEREGIHL*QALLHL
Trigger: AAGGTGAAGAAGAGCCTGCCAGAGATGTATGCCTTC...TCTCTCTAGGGGCCCCACTATATCCTGGGCATACCTAGCTAAAGCAGGCAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 72 bp GTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTaGAAGTTCAAGTTCTCTCTCCCAACCATGGGTACC +
Preference number: 4 (lower is better)
Translates to: VRVGLDLVWKVD*KFKFSLPTMGT
Trigger: GGTACCCATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR GCA 90 bp CAGCACACAGACAGACACGGATGCACTAGTTTCAGACACAACATGGACCTGTGTTCATCGATCTTGCTCTaGAGCAGATCCTTGAGGCTG +
Preference number: 4 (lower is better)
Translates to: QHTDRHGCTSFRHNMDLCSSILL*SRSLRL
Trigger: CAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGA...ACACAGGTCCATGTTGTGTCTGAAACTAGTGCATCCGTGTCTGTCTGTGTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp GGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCTGGCATACATGTAGTTaGTCCGCAGTGGGAATGTCA +
Preference number: 4 (lower is better)
Translates to: GGARSGLESRFEVQVLSPWHTCS*SAVGMS
Trigger: TGACATTCCCACTGCGGACCAACTACATGTATGCCA...GGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp GCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCAACCATCTGATGGTCTCCTTCTaGCTGAGGATGGTCTCCTTC +
Preference number: 4 (lower is better)
Translates to: ARSGLESRFEVQVLSPNHLMVSF*LRMVSF
Trigger: GAAGGAGACCATCCTCAGCCAGAAGGAGACCATCAG...ATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 72 bp AGATTACGGAGTCGATGGGAAATATGCGGATTAGATTaGCGGCTGTCGTTACCTTTCTCAGGGCCAGCAAAG +
Preference number: 4 (lower is better)
Translates to: RLRSRWEICGLD*RLSLPFSGPAK
Trigger: CTTTGCTGGCCCTGAGAAAGGTAACGACAGCCGCAAATCTAATCCGCATATTTCCCATCGACTCCGTAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp TCCCAGAAGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTTCCCAGATGTTGAAATaGGCTAGCTCACCCACAAAT +
Preference number: 4 (lower is better)
Translates to: SQKAKSKGGARSGLESRFSQMLK*ASSPTN
Trigger: ATTTGTGGGTGAGCTAGCCCATTTCAACATCTGGGA...AAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCTTCTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR TCA 90 bp AGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTGGTATCCAAATTCTTATCAGTGGGAATGTCAGCTaGAACTTGTCTCCGGGGCGA +
Preference number: 4 (lower is better)
Translates to: RVTLIPSIKLRTGIQILISGNVS*NLSPGR
Trigger: TCGCCCCGGAGACAAGTTTCAGCTGACATTCCCACT...GATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 72 bp GTCTCTCTCTCTCTCTCTTTCTCACGAAATTCTGCATaGTCAAAGCTGATGCTGCCTGCTTTAGCTAGGTAT +
Preference number: 4 (lower is better)
Translates to: VSLSLSFSRNSA*SKLMLPALARY
Trigger: ATACCTAGCTAAAGCAGGCAGCATCAGCTTTGACAATGCAGAATTTCGTGAGAAAGAGAGAGAGAGAGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CCA 90 bp AGAGTGACCCTAATTCCTTCTATCAAGCTCAGAACTGGTATCCAAATTCTTATCCGAATGTCCACTTGGTaGCTCCACCAAAGATCTCGA +
Preference number: 4 (lower is better)
Translates to: RVTLIPSIKLRTGIQILIRMSTW*LHQRSR
Trigger: TCGAGATCTTTGGTGGAGCCACCAAGTGGACATTCG...GATAAGAATTTGGATACCAGTTCTGAGCTTGATAGAAGGAATTAGGGTCACTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 72 bp TTGGGCTTTTGTTTCTCCTCAATGACTTGTTCCCTTTaGAACAAATTGCACGTAAGTCCACTGCGCACAGAA +
Preference number: 4 (lower is better)
Translates to: LGFCFSSMTCSL*NKLHVSPLRTE
Trigger: TTCTGTGCGCAGTGGACTTACGTGCAATTTGTTCAAAAGGGAACAAGTCATTGAGGAGAAACAAAAGCCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
3UTR CAA 72 bp TGTTTCTCCTCAATGACTTGTTCCCTTTTGAACAAATaGCACGTAAGTCCACTGCGCACAGAAGCAATACAT +
Preference number: 4 (lower is better)
Translates to: CFSSMTCSLLNK*HVSPLRTEAIH
Trigger: ATGTATTGCTTCTGTGCGCAGTGGACTTACGTGCAATTTGTTCAAAAGGGAACAAGTCATTGAGGAGAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 90 bp AAGCTCCTCCGCGCCGCCCGCAGCCACGGACGCGGCACACATGTCTaGATCCACCGGCACCGAAGTGCAGATGAAGCGGGTCGGCCCGAA +
Preference number: 5 (lower is better)
Translates to: KLLRAARSHGRGTHV*IHRHRSADEAGRPE
Trigger: TTCGGGCCGACCCGCTTCATCTGCACTTCGGTGCCGGTGGATGCAGACATGTGTGCCGCGTCCGTGGCTGCGGGCGGCGCGGAGGAGCTT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS TCA 90 bp CGGACGCGGCACACATGTCTGCATCCACCGGCACCGAAGTGCAGATaGAGCGGGTCGGCCCGAAATCTTGGGCCCCACTGCCCAGGAGGC +
Preference number: 5 (lower is better)
Translates to: RTRHTCLHPPAPKCR*SGSARNLGPHCPGG
Trigger: GCCTCCTGGGCAGTGGGGCCCAAGATTTCGGGCCGACCCGCTTCATCTGCACTTCGGTGCCGGTGGATGCAGACATGTGTGCCGCGTCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp GGGGGAGGGGAGAAGAGAGACGATGGGTCACCGCACAAGCAGGGTGGGCAGGCGTCGCAGCGGCCAAGCTaGGTGGTCAGCTCCCTGATG +
Preference number: 5 (lower is better)
Translates to: GGGEKRDDGSPHKQGGQASQRPS*VVSSLM
Trigger: CATCAGGGAGCTGACCACCAAGCTTGGCCGCTGCGA...CGCCTGCCCACCCTGCTTGTGCGGTGACCCATCGTCTCTCTTCTCCCCTCCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp CCAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTCGGAGCTGCAGCACGTaGCTCCGAAGCTCCTCCGCG +
Preference number: 5 (lower is better)
Translates to: PGCCRTPSAEANTVSTVRRSCST*LRSSSA
Trigger: CGCGGAGGAGCTTCGGAGCAACGTGCTGCAGCTCCG...ACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp TGTCCTTCCCCCTCACTGCCCACAAGACAACCCCTTGGCCTCAGGTCCCAGGGCATGAGGACCAGTTCGTaGGCCTGCCCAGGCACAGCA +
Preference number: 5 (lower is better)
Translates to: CPSPSLPTRQPLGLRSQGMRTSS*ACPGTA
Trigger: TGCTGTGCCTGGGCAGGCCAACGAACTGGTCCTCAT...GCCCTGGGACCTGAGGCCAAGGGGTTGTCTTGTGGGCAGTGAGGGGGAAGGACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 90 bp GGGCCCCCTTTCCCCTCCTCCAGAGTGTTCACCCGAGACAGCACCTaGCGCTCCAGGTCATCGATCTTGCTCTGCAGCAGATCCTTGAGG +
Preference number: 5 (lower is better)
Translates to: GPPFPSSRVFTRDST*RSRSSILLCSRSLR
Trigger: CCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCTGGAGCGGCAGGTGCTGTCTCGGGTGAACACTCTGGAGGAGGGGAAAGGGGGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 90 bp AGGTTCTCCAGTCGGGTTTTGAGAGATTGCAAAGTTTGCCCGAGTTaGCTGAGCGTCTCCGCGGCCGGCGTCCGGGACAGGTCGCCCATC +
Preference number: 5 (lower is better)
Translates to: RFSSRVLRDCKVCPS*LSVSAAGVRDRSPI
Trigger: GATGGGCGACCTGTCCCGGACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 90 bp TACTGCTCGAGGTTCTCCAGTCGGGTTTTGAGAGATTGCAAAGTTTaGCCGAGTTGGCTGAGCGTCTCCGCGGCCGGCGTCCGGGACAGG +
Preference number: 5 (lower is better)
Translates to: YCSRFSSRVLRDCKV*PSWLSVSAAGVRDR
Trigger: CCTGTCCCGGACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 90 bp AGGCGGCTGTACTGCTCGAGGTTCTCCAGTCGGGTTTTGAGAGATTaGAAAGTTTGCCCGAGTTGGCTGAGCGTCTCCGCGGCCGGCGTC +
Preference number: 5 (lower is better)
Translates to: RRLYCSRFSSRVLRD*KVCPSWLSVSAAGV
Trigger: GACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTACAGCCGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 90 bp AGGTCAAGGCGCTCTCGATCTTGGCCCTTTCCTCTGTGTCGTTCTTaGGGCCCCCTTTCCCCTCCTCCAGAGTGTTCACCCGAGACAGCA +
Preference number: 5 (lower is better)
Translates to: RSRRSRSWPFPLCRS*GPLSPPPECSPETA
Trigger: TGCTGTCTCGGGTGAACACTCTGGAGGAGGGGAAAGGGGGCCCCAAGAACGACACAGAGGAAAGGGCCAAGATCGAGAGCGCCTTGACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp CTGGGGCTGGTGGCAGGGGTTGGCAGGAGTACACCGGGCATAGCCGGCTCTGGGTTCTCCAGTCGGGTTTaGAGAGATTGCAAAGTTTGC +
Preference number: 5 (lower is better)
Translates to: LGLVAGVGRSTPGIAGSGFSSRV*RDCKVC
Trigger: GCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAA...CCCAGAGCCGGCTATGCCCGGTGTACTCCTGCCAACCCCTGCCACCAGCCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS TCA 90 bp TGGTGGCTCCACCAAAGATCTCGATCTGGGACTCAGCCCAGGCGATaGCATTGCCAGAGAGAGCCTTGCTGCTGCAGGTGGCCAGGTTGT +
Preference number: 5 (lower is better)
Translates to: WWLHQRSRSGTQPRR*HCQREPCCCRWPGC
Trigger: ACAACCTGGCCACCTGCAGCAGCAAGGCTCTCTCTGGCAATGTCATCGCCTGGGCTGAGTCCCAGATCGAGATCTTTGGTGGAGCCACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp CAGGGTGCTGTCGGACACCATCGGCAGAAGCAAACACTGTCTCGACAGTGCGTTTCCCCGGGGGTCAGCTaGCGGTCCCAGATGTTGAAA +
Preference number: 5 (lower is better)
Translates to: QGAVGHHRQKQTLSRQCVSPGVS*RSQMLK
Trigger: TTTCAACATCTGGGACCGCAAGCTGACCCCCGGGGA...AACGCACTGTCGAGACAGTGTTTGCTTCTGCCGATGGTGTCCGACAGCACCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp TTACACACCCTCAAGATCTGGTGGCCCCTCATCAGAGCTCACTGGAATGACTGTCTGCAGGTGGCCAGGTaGTACACCTCCCCGGGGGTC +
Preference number: 5 (lower is better)
Translates to: LHTLKIWWPLIRAHWNDCLQVAR*YTSPGV
Trigger: GACCCCCGGGGAGGTGTACAACCTGGCCACCTGCAG...ACAGTCATTCCAGTGAGCTCTGATGAGGGGCCACCAGATCTTGAGGGTGTGTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp ATGCTGCCTGCTTTAGCTAGGTATGCCCAGGATATAGTGGGGCCCCTAGAGAGACAAAGTTTGCCCGAGTaGGCTGAGCGTCTCCGCGGC +
Preference number: 5 (lower is better)
Translates to: MLPALARYAQDIVGPLERQSLPE*AERLRG
Trigger: GCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTG...TCTCTCTAGGGGCCCCACTATATCCTGGGCATACCTAGCTAAAGCAGGCAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp GCCAGAGAAGAGCCGGGACTGCTTCAAGTGCACAAGGAGGACAACCAGGCTGTGGCCTCGAATGTCCACTaGGTGGCTCCACCAAAGATC +
Preference number: 5 (lower is better)
Translates to: AREEPGLLQVHKEDNQAVASNVH*VAPPKI
Trigger: GATCTTTGGTGGAGCCACCAAGTGGACATTCGAGGC...CACAGCCTGGTTGTCCTCCTTGTGCACTTGAAGCAGTCCCGGCTCTTCTCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 90 bp CAAGCCTCGAATGTCCACTTGGTGGCTCCACCAAAGATCTCGATCTaGGACTCAGCCCAGGCGATGACATTGCCAGAGAGAGCCTTGCTG +
Preference number: 5 (lower is better)
Translates to: QASNVHLVAPPKISI*DSAQAMTLPERALL
Trigger: CAGCAAGGCTCTCTCTGGCAATGTCATCGCCTGGGCTGAGTCCCAGATCGAGATCTTTGGTGGAGCCACCAAGTGGACATTCGAGGCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp AGGGGGTACTCATGCCTACTTTCAATAAGGAAAAGCCACGGGCTCAGTGTCTCAGGCGCCGCACTGGACTaGAGCCACATGCACACGGTG +
Preference number: 5 (lower is better)
Translates to: RGYSCLLSIRKSHGLSVSGAALD*SHMHTV
Trigger: CACCGTGTGCATGTGGCTCAAGTCCAGTGCGGCGCC...TGAGACACTGAGCCCGTGGCTTTTCCTTATTGAAAGTAGGCATGAGTACCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 90 bp TTCACCCGAGACAGCACCTGCCGCTCCAGGTCATCGATCTTGCTCTaGAGCAGATCCTTGAGGCTGTTGGTTTGGCTGGAAGAATTGAGG +
Preference number: 5 (lower is better)
Translates to: FTRDSTCRSRSSILL*SRSLRLLVWLEELR
Trigger: CCTCAATTCTTCCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCTGGAGCGGCAGGTGCTGTCTCGGGTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp GAAGGGAACAAACTAACTCATTCTAGAAGAAAGCCTCCCTACACACACACTCGCGGTCGGCCCGAAATCTaGGGCCCCACTGCCCAGGAG +
Preference number: 5 (lower is better)
Translates to: EGNKLTHSRRKPPYTHTRGRPEI*GPTAQE
Trigger: CTCCTGGGCAGTGGGGCCCAAGATTTCGGGCCGACC...GCGAGTGTGTGTGTAGGGAGGCTTTCTTCTAGAATGAGTTAGTTTGTTCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp TTACACACCCTCAAGATCTGGTGGCCCCTCATCAGAGCTCACTGGAATGACTGTGCCCAGGCGATGACATaGCCAGAGAGAGCCTTGCTG +
Preference number: 5 (lower is better)
Translates to: LHTLKIWWPLIRAHWNDCAQAMT*PERALL
Trigger: CAGCAAGGCTCTCTCTGGCAATGTCATCGCCTGGGC...ACAGTCATTCCAGTGAGCTCTGATGAGGGGCCACCAGATCTTGAGGGTGTGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 90 bp AGGTCATCGATCTTGCTCTGCAGCAGATCCTTGAGGCTGTTGGTTTaGCTGGAAGAATTGAGGCGGCTGTACTGCTCGAGGTTCTCCAGT +
Preference number: 5 (lower is better)
Translates to: RSSILLCSRSLRLLV*LEELRRLYCSRFSS
Trigger: ACTGGAGAACCTCGAGCAGTACAGCCGCCTCAATTCTTCCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp GGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCGTTTGGCTGGAAGAATaGAGGCGGCTGTACTGCTCG +
Preference number: 5 (lower is better)
Translates to: GGARSGLESRFEVQVLSPVWLEE*RRLYCS
Trigger: CGAGCAGTACAGCCGCCTCAATTCTTCCAGCCAAAC...GGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 90 bp TGGCAGGCTCTTCTTCACCTTGGCATACATGTAGTTGGTCCGCAGTaGGAATGTCAGCTGAAACTTGTCTCCGGGGCGATTGTCTTTCTG +
Preference number: 5 (lower is better)
Translates to: WQALLHLGIHVVGPQ*ECQLKLVSGAIVFL
Trigger: CAGAAAGACAATCGCCCCGGAGACAAGTTTCAGCTGACATTCCCACTGCGGACCAACTACATGTATGCCAAGGTGAAGAAGAGCCTGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 90 bp CATACATCTCTGGCAGGCTCTTCTTCACCTTGGCATACATGTAGTTaGTCCGCAGTGGGAATGTCAGCTGAAACTTGTCTCCGGGGCGAT +
Preference number: 5 (lower is better)
Translates to: HTSLAGSSSPWHTCS*SAVGMSAETCLRGD
Trigger: ATCGCCCCGGAGACAAGTTTCAGCTGACATTCCCACTGCGGACCAACTACATGTATGCCAAGGTGAAGAAGAGCCTGCCAGAGATGTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp TTTCTCAGGGCCAGCAAAGTGCCAAGTGTGAACACAGTGACGGAGAGGAGGGCTAGATCCTTGAGGCTGTaGGTTTGGCTGGAAGAATTG +
Preference number: 5 (lower is better)
Translates to: FLRASKVPSVNTVTERRARSLRL*VWLEEL
Trigger: CAATTCTTCCAGCCAAACCAACAGCCTCAAGGATCT...AGCCCTCCTCTCCGTCACTGTGTTCACACTTGGCACTTTGCTGGCCCTGAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp TGCGGCTGTCGTTACCTTTCTCAGGGCCAGCAAAGTGCCAAGTGTGAACACAGTGGCAGCTTGGCCACCTaGTCATTAATGAGTATCTCC +
Preference number: 5 (lower is better)
Translates to: CGCRYLSQGQQSAKCEHSGSLAT*SLMSIS
Trigger: GGAGATACTCATTAATGACAAGGTGGCCAAGCTGCC...ACTGTGTTCACACTTGGCACTTTGCTGGCCCTGAGAAAGGTAACGACAGCCGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp AGGCTAAAAGTAAGGGTGGGGCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCGAGAGATTGCAAAGTTaGCCCGAGTTGGCTGAGCGT +
Preference number: 5 (lower is better)
Translates to: RLKVRVGLDLVWKVDLKFERLQS*PELAER
Trigger: ACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTC...GAACTTCAAATCGACTTTCCAGACCAGATCGAGCCCCACCCTTACTTTTAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp ATGCTGCCTGCTTTAGCTAGGTATGCCCAGGATATAGTGGGGCCCCTAGAGAGAATTACAAACGGCAGCTaGGCCACCTTGTCATTAATG +
Preference number: 5 (lower is better)
Translates to: MLPALARYAQDIVGPLERITNGS*ATLSLM
Trigger: CATTAATGACAAGGTGGCCAAGCTGCCGTTTGTAAT...TCTCTCTAGGGGCCCCACTATATCCTGGGCATACCTAGCTAAAGCAGGCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp GCTCGATCTGGTCTGGAAAGTCGATTTGAAGTTCAAGTTCTCTCTCCCAACCATTTGCGGTCCCAGATGTaGAAATGGGCTAGCTCACCC +
Preference number: 5 (lower is better)
Translates to: ARSGLESRFEVQVLSPNHLRSQM*KWASSP
Trigger: GGGTGAGCTAGCCCATTTCAACATCTGGGACCGCAA...ATGGTTGGGAGAGAGAACTTGAACTTCAAATCGACTTTCCAGACCAGATCGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp AGGGGGTACTCATGCCTACTTTCAATAAGGAAAAGCCACGGGCTCAGTGTCTCATCGGGTTTTGAGAGATaGCAAAGTTTGCCCGAGTTG +
Preference number: 5 (lower is better)
Translates to: RGYSCLLSIRKSHGLSVSSGFER*QSLPEL
Trigger: CAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGA...TGAGACACTGAGCCCGTGGCTTTTCCTTATTGAAAGTAGGCATGAGTACCCCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS-3UTR CAA 90 bp GAAGGGAACAAACTAACTCATTCTAGAAGAAAGCCTCCCTACACACACACTCGCTCCAGGTCATCGATCTaGCTCTGCAGCAGATCCTTG +
Preference number: 5 (lower is better)
Translates to: EGNKLTHSRRKPPYTHTRSRSSI*LCSRSL
Trigger: CAAGGATCTGCTGCAGAGCAAGATCGATGACCTGGA...GCGAGTGTGTGTGTAGGGAGGCTTTCTTCTAGAATGAGTTAGTTTGTTCCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 72 bp CGCGCCGCCCGCAGCCACGGACGCGGCACACATGTCTaGATCCACCGGCACCGAAGTGCAGATGAAGCGGGT +
Preference number: 6 (lower is better)
Translates to: RAARSHGRGTHV*IHRHRSADEAG
Trigger: ACCCGCTTCATCTGCACTTCGGTGCCGGTGGATGCAGACATGTGTGCCGCGTCCGTGGCTGCGGGCGGCGCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp GAGGTTCTCCAGTCGGGTTTTGAGAGATTGCAAAGTTTGCCCGAGTaGGCTGAGCGTCTCCGCGGCCGGCGTCCGGGACAGGTCGCCCAT +
Preference number: 6 (lower is better)
Translates to: EVLQSGFERLQSLPE*AERLRGRRPGQVAH
Trigger: ATGGGCGACCTGTCCCGGACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS TCA 72 bp CACACATGTCTGCATCCACCGGCACCGAAGTGCAGATaGAGCGGGTCGGCCCGAAATCTTGGGCCCCACTGC +
Preference number: 6 (lower is better)
Translates to: HTCLHPPAPKCR*SGSARNLGPHC
Trigger: GCAGTGGGGCCCAAGATTTCGGGCCGACCCGCTTCATCTGCACTTCGGTGCCGGTGGATGCAGACATGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 72 bp GATAGGGTGCCAAGTTCTCTCCATTGCCACCCTGGGTaGCATCCTGATAGGCCTCCCAGACCCCATCCCGGG +
Preference number: 6 (lower is better)
Translates to: DRVPSSLHCHPG*HPDRPPRPHPG
Trigger: CCCGGGATGGGGTCTGGGAGGCCTATCAGGATGGCACCCAGGGTGGCAATGGAGAGAACTTGGCACCCTATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 72 bp AGTCGGGTTTTGAGAGATTGCAAAGTTTGCCCGAGTTaGCTGAGCGTCTCCGCGGCCGGCGTCCGGGACAGG +
Preference number: 6 (lower is better)
Translates to: SRVLRDCKVCPS*LSVSAAGVRDR
Trigger: CCTGTCCCGGACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp CAGTCGGGTTTTGAGAGATTGCAAAGTTTGCCCGAGTaGGCTGAGCGTCTCCGCGGCCGGCGTCCGGGACAG +
Preference number: 6 (lower is better)
Translates to: QSGFERLQSLPE*AERLRGRRPGQ
Trigger: CTGTCCCGGACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp CAGGTGGCCAGGTTGTACACCTCCCCGGGGGTCAGCTaGCGGTCCCAGATGTTGAAATGGGCTAGCTCACCC +
Preference number: 6 (lower is better)
Translates to: QVARLYTSPGVS*RSQMLKWASSP
Trigger: GGGTGAGCTAGCCCATTTCAACATCTGGGACCGCAAGCTGACCCCCGGGGAGGTGTACAACCTGGCCACCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp GTACTGCTCGAGGTTCTCCAGTCGGGTTTTGAGAGATTGCAAAGTTaGCCCGAGTTGGCTGAGCGTCTCCGCGGCCGGCGTCCGGGACAG +
Preference number: 6 (lower is better)
Translates to: VLLEVLQSGFERLQS*PELAERLRGRRPGQ
Trigger: CTGTCCCGGACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp GAGGCGGCTGTACTGCTCGAGGTTCTCCAGTCGGGTTTTGAGAGATaGCAAAGTTTGCCCGAGTTGGCTGAGCGTCTCCGCGGCCGGCGT +
Preference number: 6 (lower is better)
Translates to: EAAVLLEVLQSGFER*QSLPELAERLRGRR
Trigger: ACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTACAGCCGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp GCGATGACATTGCCAGAGAGAGCCTTGCTGCTGCAGGTGGCCAGGTaGTACACCTCCCCGGGGGTCAGCTTGCGGTCCCAGATGTTGAAA +
Preference number: 6 (lower is better)
Translates to: AMTLPERALLLQVAR*YTSPGVSLRSQMLK
Trigger: TTTCAACATCTGGGACCGCAAGCTGACCCCCGGGGAGGTGTACAACCTGGCCACCTGCAGCAGCAAGGCTCTCTCTGGCAATGTCATCGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS TCA 72 bp ACACCTCCCCGGGGGTCAGCTTGCGGTCCCAGATGTTaGAATGGGCTAGCTCACCCACAAATGCTTGGGTGG +
Preference number: 6 (lower is better)
Translates to: TPPRGSACGPRC*NGLAHPQMLGW
Trigger: CCACCCAAGCATTTGTGGGTGAGCTAGCCCATTTCAACATCTGGGACCGCAAGCTGACCCCCGGGGAGGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 72 bp AGGTTCTCCAGTCGGGTTTTGAGAGATTGCAAAGTTTaGCCGAGTTGGCTGAGCGTCTCCGCGGCCGGCGTC +
Preference number: 6 (lower is better)
Translates to: RFSSRVLRDCKV*PSWLSVSAAGV
Trigger: GACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 72 bp TTCCCCTCCTCCAGAGTGTTCACCCGAGACAGCACCTaGCGCTCCAGGTCATCGATCTTGCTCTGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: FPSSRVFTRDST*RSRSSILLCSR
Trigger: TCTGCTGCAGAGCAAGATCGATGACCTGGAGCGGCAGGTGCTGTCTCGGGTGAACACTCTGGAGGAGGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 72 bp TCCGTTGGTGTAGGGAGGTCAAGGCGCTCTCGATCTTaGCCCTTTCCTCTGTGTCGTTCTTGGGGCCCCCTT +
Preference number: 6 (lower is better)
Translates to: SVGVGRSRRSRS*PFPLCRSWGPL
Trigger: AAGGGGGCCCCAAGAACGACACAGAGGAAAGGGCCAAGATCGAGAGCGCCTTGACCTCCCTACACCAACGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp GAGGTTCTCCAGTCGGGTTTTGAGAGATTGCAAAGTTaGCCCGAGTTGGCTGAGCGTCTCCGCGGCCGGCGT +
Preference number: 6 (lower is better)
Translates to: EVLQSGFERLQS*PELAERLRGRR
Trigger: ACGCCGGCCGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp TTGCTGCTGCAGGTGGCCAGGTTGTACACCTCCCCGGGGGTCAGCTaGCGGTCCCAGATGTTGAAATGGGCTAGCTCACCCACAAATGCT +
Preference number: 6 (lower is better)
Translates to: LLLQVARLYTSPGVS*RSQMLKWASSPTNA
Trigger: AGCATTTGTGGGTGAGCTAGCCCATTTCAACATCTGGGACCGCAAGCTGACCCCCGGGGAGGTGTACAACCTGGCCACCTGCAGCAGCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS TCA 72 bp CGGGGCGATTGTCTTTCTGACCTTTCTCCAGCTCGCTaGTCCGTTGGTGTAGGGAGGTCAAGGCGCTCTCGA +
Preference number: 6 (lower is better)
Translates to: RGDCLSDLSPAR*SVGVGRSRRSR
Trigger: TCGAGAGCGCCTTGACCTCCCTACACCAACGGATCAGCGAGCTGGAGAAAGGTCAGAAAGACAATCGCCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS TCA 72 bp CCTGTTCCTGACCCAGCACCAGCACGCCCTGTGGTTTaGTGGGGTGATAGGGTGCCAAGTTCTCTCCATTGC +
Preference number: 6 (lower is better)
Translates to: PVPDPAPARPVV*WGDRVPSSLHC
Trigger: GCAATGGAGAGAACTTGGCACCCTATCACCCCATCAAACCACAGGGCGTGCTGGTGCTGGGTCAGGAACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS TCA 72 bp CACCAAAGATCTCGATCTGGGACTCAGCCCAGGCGATaGCATTGCCAGAGAGAGCCTTGCTGCTGCAGGTGG +
Preference number: 6 (lower is better)
Translates to: HQRSRSGTQPRR*HCQREPCCCRW
Trigger: CCACCTGCAGCAGCAAGGCTCTCTCTGGCAATGTCATCGCCTGGGCTGAGTCCCAGATCGAGATCTTTGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp ACCCGAGACAGCACCTGCCGCTCCAGGTCATCGATCTaGCTCTGCAGCAGATCCTTGAGGCTGTTGGTTTGG +
Preference number: 6 (lower is better)
Translates to: TRDSTCRSRSSI*LCSRSLRLLVW
Trigger: CCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCTGGAGCGGCAGGTGCTGTCTCGGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp TACACCTCCCCGGGGGTCAGCTTGCGGTCCCAGATGTaGAAATGGGCTAGCTCACCCACAAATGCTTGGGTG +
Preference number: 6 (lower is better)
Translates to: YTSPGVSLRSQM*KWASSPTNAWV
Trigger: CACCCAAGCATTTGTGGGTGAGCTAGCCCATTTCAACATCTGGGACCGCAAGCTGACCCCCGGGGAGGTGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 72 bp GACAGCACCTGCCGCTCCAGGTCATCGATCTTGCTCTaGAGCAGATCCTTGAGGCTGTTGGTTTGGCTGGAA +
Preference number: 6 (lower is better)
Translates to: DSTCRSRSSILL*SRSLRLLVWLE
Trigger: TTCCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCTGGAGCGGCAGGTGCTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp GAAGAATTGAGGCGGCTGTACTGCTCGAGGTTCTCCAGTCGGGTTTaGAGAGATTGCAAAGTTTGCCCGAGTTGGCTGAGCGTCTCCGCG +
Preference number: 6 (lower is better)
Translates to: EELRRLYCSRFSSRV*RDCKVCPSWLSVSA
Trigger: CGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTACAGCCGCCTCAATTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp CGCTCCAGGTCATCGATCTTGCTCTGCAGCAGATCCTTGAGGCTGTaGGTTTGGCTGGAAGAATTGAGGCGGCTGTACTGCTCGAGGTTC +
Preference number: 6 (lower is better)
Translates to: RSRSSILLCSRSLRL*VWLEELRRLYCSRF
Trigger: GAACCTCGAGCAGTACAGCCGCCTCAATTCTTCCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCTGGAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp AGAGTGTTCACCCGAGACAGCACCTGCCGCTCCAGGTCATCGATCTaGCTCTGCAGCAGATCCTTGAGGCTGTTGGTTTGGCTGGAAGAA +
Preference number: 6 (lower is better)
Translates to: RVFTRDSTCRSRSSI*LCSRSLRLLVWLEE
Trigger: TTCTTCCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCTGGAGCGGCAGGTGCTGTCTCGGGTGAACACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS GCA 72 bp TACTGCTCGAGGTTCTCCAGTCGGGTTTTGAGAGATTaGAAAGTTTGCCCGAGTTGGCTGAGCGTCTCCGCG +
Preference number: 6 (lower is better)
Translates to: YCSRFSSRVLRD*KVCPSWLSVSA
Trigger: CGCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp GTACTGCTCGAGGTTCTCCAGTCGGGTTTTGAGAGATaGCAAAGTTTGCCCGAGTTGGCTGAGCGTCTCCGC +
Preference number: 6 (lower is better)
Translates to: VLLEVLQSGFER*QSLPELAERLR
Trigger: GCGGAGACGCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp AGGCGGCTGTACTGCTCGAGGTTCTCCAGTCGGGTTTaGAGAGATTGCAAAGTTTGCCCGAGTTGGCTGAGC +
Preference number: 6 (lower is better)
Translates to: RRLYCSRFSSRV*RDCKVCPSWLS
Trigger: GCTCAGCCAACTCGGGCAAACTTTGCAATCTCTCAAAACCCGACTGGAGAACCTCGAGCAGTACAGCCGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp AGCAGATCCTTGAGGCTGTTGGTTTGGCTGGAAGAATaGAGGCGGCTGTACTGCTCGAGGTTCTCCAGTCGG +
Preference number: 6 (lower is better)
Translates to: SRSLRLLVWLEE*RRLYCSRFSSR
Trigger: CCGACTGGAGAACCTCGAGCAGTACAGCCGCCTCAATTCTTCCAGCCAAACCAACAGCCTCAAGGATCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 90 bp CAGGTCATCGATCTTGCTCTGCAGCAGATCCTTGAGGCTGTTGGTTaGGCTGGAAGAATTGAGGCGGCTGTACTGCTCGAGGTTCTCCAG +
Preference number: 6 (lower is better)
Translates to: QVIDLALQQILEAVG*AGRIEAAVLLEVLQ
Trigger: CTGGAGAACCTCGAGCAGTACAGCCGCCTCAATTCTTCCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGACCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 72 bp AATGTCCACTTGGTGGCTCCACCAAAGATCTCGATCTaGGACTCAGCCCAGGCGATGACATTGCCAGAGAGA +
Preference number: 6 (lower is better)
Translates to: NVHLVAPPKISI*DSAQAMTLPER
Trigger: TCTCTCTGGCAATGTCATCGCCTGGGCTGAGTCCCAGATCGAGATCTTTGGTGGAGCCACCAAGTGGACATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CAA 72 bp TCATCGATCTTGCTCTGCAGCAGATCCTTGAGGCTGTaGGTTTGGCTGGAAGAATTGAGGCGGCTGTACTGC +
Preference number: 6 (lower is better)
Translates to: SSILLCSRSLRL*VWLEELRRLYC
Trigger: GCAGTACAGCCGCCTCAATTCTTCCAGCCAAACCAACAGCCTCAAGGATCTGCTGCAGAGCAAGATCGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 72 bp CTTCTTCACCTTGGCATACATGTAGTTGGTCCGCAGTaGGAATGTCAGCTGAAACTTGTCTCCGGGGCGATT +
Preference number: 6 (lower is better)
Translates to: LLHLGIHVVGPQ*ECQLKLVSGAI
Trigger: AATCGCCCCGGAGACAAGTTTCAGCTGACATTCCCACTGCGGACCAACTACATGTATGCCAAGGTGAAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5
CDS CCA 72 bp CTGGCAGGCTCTTCTTCACCTTGGCATACATGTAGTTaGTCCGCAGTGGGAATGTCAGCTGAAACTTGTCTC +
Preference number: 6 (lower is better)
Translates to: LAGSSSPWHTCS*SAVGMSAETCL
Trigger: GAGACAAGTTTCAGCTGACATTCCCACTGCGGACCAACTACATGTATGCCAAGGTGAAGAAGAGCCTGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026670.5