Pregenerated sensors for NPSR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043659Ensembl transcript IDs: ENSMUST00000059650.11, ENSMUST00000133787.8, ENSMUST00000154644.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCTCCTGTaGGCAGGAGAGCCACAGGCTCCTGTAGGCTACCGTCACAGTCCA | + |
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Preference number: 1 (lower is better) Translates to: NLYFPTTTLLLSRLL*AGEPQAPVGYRHSP Trigger: TGGACTGTGACGGTAGCCTACAGGAGCCTGTGGCTCTCCTGCTCACAGGAGCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR TCA 90 bp | GGTGGCATGCCCTCATTAGAAAGTTGGCTTCATATATCTGCTAGGTaGGGCAGGAGTCAGGAGGAGGAACTGGCTCAGGATTCAAGCGCA | + |
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Preference number: 1 (lower is better) Translates to: GGMPSLESWLHISAR*GRSQEEELAQDSSA Trigger: TGCGCTTGAATCCTGAGCCAGTTCCTCCTCCTGACTCCTGCCTCACCTAGCAGATATATGAAGCCAACTTTCTAATGAGGGCATGCCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR GCA 90 bp | TGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTaGCAGAGGTGCCAGATAGACAAAGGCTACAGCACACAGCAAAGA | + |
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Preference number: 1 (lower is better) Translates to: CSPIKISPTSTSLQR*QRCQIDKGYSTQQR Trigger: TCTTTGCTGTGTGCTGTAGCCTTTGTCTATCTGGCACCTCTGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR TCA 90 bp | AGTGGCCCTGAGGTGTGTGGAATGAACTCAGGGTGGCTTGAATGTTaGTTCAGGGAAGGGAAGAACCTTTACACAGTCCGAAGTGCTGTG | + |
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Preference number: 1 (lower is better) Translates to: SGPEVCGMNSGWLEC*FREGKNLYTVRSAV Trigger: CACAGCACTTCGGACTGTGTAAAGGTTCTTCCCTTCCCTGAATCAACATTCAAGCCACCCTGAGTTCATTCCACACACCTCAGGGCCACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CCA 90 bp | GGCTTCATATATCTGCTAGGTGAGGCAGGAGTCAGGAGGAGGAACTaGCTCAGGATTCAAGCGCATACACTAACTGGTAAAGATCCAGGA | + |
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Preference number: 1 (lower is better) Translates to: GFIYLLGEAGVRRRN*LRIQAHTLTGKDPG Trigger: TCCTGGATCTTTACCAGTTAGTGTATGCGCTTGAATCCTGAGCCAGTTCCTCCTCCTGACTCCTGCCTCACCTAGCAGATATATGAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CCA 90 bp | TGTTTTGCAGGAAACTGTACTGCCTTTTTCACAAATCACAATGCTTaGGAGTTTGCTCTTGCTAACATTTCCTCCTGCACTTGGAGATGT | + |
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Preference number: 1 (lower is better) Translates to: CFAGNCTAFFTNHNA*EFALANISSCTWRC Trigger: ACATCTCCAAGTGCAGGAGGAAATGTTAGCAAGAGCAAACTCCCAAGCATTGTGATTTGTGAAAAAGGCAGTACAGTTTCCTGCAAAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CCA 90 bp | TCACTATTTGGTGTGCTCATTCTGCTAGGTGATAATGTGCCTGCATaGTGTCCTTGTTTTGCAGGAAACTGTACTGCCTTTTTCACAAAT | + |
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Preference number: 1 (lower is better) Translates to: SLFGVLILLGDNVPA*CPCFAGNCTAFFTN Trigger: ATTTGTGAAAAAGGCAGTACAGTTTCCTGCAAAACAAGGACACCATGCAGGCACATTATCACCTAGCAGAATGAGCACACCAAATAGTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR TCA 90 bp | AGGTACTTCTTAGCCACTCAATGCTTCTGCTTGCTCAAGTTTAGCTaGTTGGATGAAGAAGAAAGTCGCTTTCTGTTGTGTGAACAGAAA | + |
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Preference number: 1 (lower is better) Translates to: RYFLATQCFCLLKFS*LDEEESRFLLCEQK Trigger: TTTCTGTTCACACAACAGAAAGCGACTTTCTTCTTCATCCAATCAGCTAAACTTGAGCAAGCAGAAGCATTGAGTGGCTAAGAAGTACCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CCA 90 bp | CACCTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATaGGAGCATCAAGGGCTACAGATAGCAACACTGTGGTTTACATTC | + |
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Preference number: 1 (lower is better) Translates to: HLYFKCHLTVFLLVP*EHQGLQIATLWFTF Trigger: GAATGTAAACCACAGTGTTGCTATCTGTAGCCCTTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAGGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR TCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGAGGGCAGAAGTGGCCCTaGGGTGTGTGGAATGAACTC | + |
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Preference number: 2 (lower is better) Translates to: SIYQGPGPPVLLARTPTRGQKWP*GVWNEL Trigger: GAGTTCATTCCACACACCTCAGGGCCACTTCTGCCC...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR TCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGACATATATCTGCTAGGTaGGGCAGGAGTCAGGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: SIYQGPGPPVLLARTPTRHISAR*GRSQEE Trigger: CTCCTCCTGACTCCTGCCTCACCTAGCAGATATATG...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CAA 90 bp | ATCAGTGGATGGTGCAGGCATGTGACAGGTCTGGTAGACCAGAACTaGACAGAGATGGAAAGCATCTATCAAGGGCCTGGGCCTCCTGTT | + |
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Preference number: 2 (lower is better) Translates to: ISGWCRHVTGLVDQN*TEMESIYQGPGPPV Trigger: AACAGGAGGCCCAGGCCCTTGATAGATGCTTTCCATCTCTGTCAAGTTCTGGTCTACCAGACCTGTCACATGCCTGCACCATCCACTGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGACATCCTTGCAGAGGTaGCAGAGGTGCCAGATAGAC | + |
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Preference number: 2 (lower is better) Translates to: CPETQHDSPRVIGLRTIMTSLQR*QRCQID Trigger: GTCTATCTGGCACCTCTGGCACCTCTGCAAGGATGT...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGTCGATCAGTGGATGGTaGAGGCATGTGACAGGTCTG | + |
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Preference number: 2 (lower is better) Translates to: CPETQHDSPRVIGLRTIMSISGW*RHVTGL Trigger: CAGACCTGTCACATGCCTGCACCATCCACTGATCGA...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGATTACACAGTCCGAAGTaGTGTGAGTTTAAGGTCTCA | + |
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Preference number: 2 (lower is better) Translates to: SIYQGPGPPVLLARTPTRLHSPK*CEFKVS Trigger: TGAGACCTTAAACTCACAGCACTTCGGACTGTGTAA...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CAA 90 bp | TTGACAGAGATGGAAAGCATCTATCAAGGGCCTGGGCCTCCTGTTTaGCTAGCTAGGACACCTACCAGATTCTACTTGTTAATTGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: LTEMESIYQGPGPPV*LARTPTRFYLLIGS Trigger: GGAGCCAATTAACAAGTAGAATCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCTTTCCATCTCTGTCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR TCA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCATACAGTAGCAGGGTCTaGATGAGAATTTCTTGGCAT | + |
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Preference number: 2 (lower is better) Translates to: ELQPYQNKPHQHILAEVPYSSRV*MRISWH Trigger: ATGCCAAGAAATTCTCATTCAGACCCTGCTACTGTA...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGTCTCAGCTCTCATTCTaGAGTTCATCATCAGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: CPETQHDSPRVIGLRTIMSQLSF*SSSSGS Trigger: AGACCCTGATGATGAACTCCAGAATGAGAGCTGAGA...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGACATCCAATATCTTTCTaGTTGCCTATGTCATCAGTT | + |
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Preference number: 2 (lower is better) Translates to: SIYQGPGPPVLLARTPTRHPISF*LPMSSV Trigger: AACTGATGACATAGGCAAGCAGAAAGATATTGGATG...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR TCA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCGAACTCAGGGTGGCTTaGATGTTGATTCAGGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGELRVA*MLIQGR Trigger: CCTTCCCTGAATCAACATTCAAGCCACCCTGAGTTC...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCATGCAGGAAACTGTACTaGCTTTTTCACAAATCACAA | + |
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Preference number: 2 (lower is better) Translates to: ELQPYQNKPHQHILAEVPCRKLY*LFHKSQ Trigger: TTGTGATTTGTGAAAAAGGCAGTACAGTTTCCTGCA...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | ATGCTAACGACTCAACCAGCAGTCAGCCAAAAGGACAAGAAAAGGTTTCAACTCGAGGTGTTAGGAGAATaGTGGCTAGTGCGTGAATTG | + |
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Preference number: 2 (lower is better) Translates to: MLTTQPAVSQKDKKRFQLEVLGE*WLVREL Trigger: CAATTCACGCACTAGCCACCATTCTCCTAACACCTC...GAGTTGAAACCTTTTCTTGTCCTTTTGGCTGACTGCTGGTTGAGTCGTTAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCTGCATCATAGGGCTGTaGGTGGAGATGTACACACAG | + |
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Preference number: 2 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGCIIGL*VEMYTQ Trigger: CTGTGTGTACATCTCCACCCACAGCCCTATGATGCA...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGCAATATCTTTCTGCTTaGCTATGTCATCAGTTCACA | + |
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Preference number: 2 (lower is better) Translates to: CPETQHDSPRVIGLRTIMQYLSA*LCHQFT Trigger: TGTGAACTGATGACATAGGCAAGCAGAAAGATATTG...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGTCAAGTTTAGCTGATTaGATGAAGAAGAAAGTCGCT | + |
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Preference number: 2 (lower is better) Translates to: CPETQHDSPRVIGLRTIMSSLAD*MKKKVA Trigger: AGCGACTTTCTTCTTCATCCAATCAGCTAAACTTGA...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | GTTTTGCAGGAAACTGTACTGCCTTTTTCACAAATCACAATGCTTGGGAGTTTGGTGTTAGGAGAATGGTaGCTAGTGCGTGAATTGCAG | + |
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Preference number: 2 (lower is better) Translates to: VLQETVLPFSQITMLGSLVLGEW*LVRELQ Trigger: CTGCAATTCACGCACTAGCCACCATTCTCCTAACAC...CAAACTCCCAAGCATTGTGATTTGTGAAAAAGGCAGTACAGTTTCCTGCAAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGTTGCAAAAACTGTTTTaGAAACTCAAGAAGCTGAGT | + |
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Preference number: 2 (lower is better) Translates to: CPETQHDSPRVIGLRTIMLQKLF*KLKKLS Trigger: ACTCAGCTTCTTGAGTTTCCAAAACAGTTTTTGCAA...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAACATCTATCAAGGGCCTaGGCCTCCTGTTTTGCTAGC | + |
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Preference number: 2 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQHLSRA*ASCFAS Trigger: GCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATG...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR TCA 90 bp | GTTTTGCAGGAAACTGTACTGCCTTTTTCACAAATCACAATGCTTGGGAGTTTGGTAGCAGGGTCTGAATaGGAATTTCTTGGCATTTCA | + |
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Preference number: 2 (lower is better) Translates to: VLQETVLPFSQITMLGSLVAGSE*EFLGIS Trigger: TGAAATGCCAAGAAATTCTCATTCAGACCCTGCTAC...CAAACTCCCAAGCATTGTGATTTGTGAAAAAGGCAGTACAGTTTCCTGCAAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCTTTCACAAATCACAATaGTTGGGAGTTTGCTCTTGC | + |
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Preference number: 2 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGFHKSQ*LGVCSC Trigger: GCAAGAGCAAACTCCCAAGCATTGTGATTTGTGAAA...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR GCA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAAATGGTGTCCTTGTTTTaGAGGAAACTGTACTGCCTT | + |
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Preference number: 2 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQMVSLF*RKLYCL Trigger: AAGGCAGTACAGTTTCCTGCAAAACAAGGACACCAT...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAACCCTCATTAGAAAGTTaGCTTCATATATCTGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQPSLES*LHISAR Trigger: CCTAGCAGATATATGAAGCCAACTTTCTAATGAGGG...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR TCA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAAAAAATTGTAATTAGATaGCTCAGGGATAGCCATCCA | + |
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Preference number: 2 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQKIVIR*LRDSHP Trigger: TGGATGGCTATCCCTGAGTCATCTAATTACAATTTT...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 37% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CCA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAATGCCATTTCCACTTCTaGCAAAATCTGAAGGAAAAA | + |
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Preference number: 2 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQCHFHF*QNLKEK Trigger: TTTTTCCTTCAGATTTTGCCAGAAGTGGAAATGGCA...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR TCA 72 bp | GAGGATTCTGAGAGTAAGGACGGGCAGAAGTGGCCCTaGGGTGTGTGGAATGAGGAGTCTGAGAGTAAGGAC | + |
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Preference number: 3 (lower is better) Translates to: EDSESKDGQKWP*GVWNEESESKD Trigger: GTCCTTACTCTCAGACTCCTCATTCCACACACCTCAGGGCCACTTCTGCCCGTCCTTACTCTCAGAATCCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR TCA 72 bp | TTTCCTACAACAACCTTATTGCTCTCCAGGCTCCTGTaGGCAGGAGAGCCACAGGCTCCTGTAGGCTACCGT | + |
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Preference number: 3 (lower is better) Translates to: FPTTTLLLSRLL*AGEPQAPVGYR Trigger: ACGGTAGCCTACAGGAGCCTGTGGCTCTCCTGCTCACAGGAGCCTGGAGAGCAATAAGGTTGTTGTAGGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR GCA 72 bp | ATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTaGCAGAGGTGCCAGATAGACAAAGGCTACAGCACA | + |
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Preference number: 3 (lower is better) Translates to: IKISPTSTSLQR*QRCQIDKGYST Trigger: TGTGCTGTAGCCTTTGTCTATCTGGCACCTCTGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR GCA 72 bp | CCTACAACAACCTGTACTTTCCTACAACAACCTTATTaGTCTCCAGGCTCCTGTGAGCAGGAGAGCCACAGG | + |
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Preference number: 3 (lower is better) Translates to: PTTTCTFLQQPY*SPGSCEQESHR Trigger: CCTGTGGCTCTCCTGCTCACAGGAGCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CAA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCACATGGTGTCCTTGTTTaGCAGGAAACTGTACTGCCT | + |
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Preference number: 3 (lower is better) Translates to: ELQPYQNKPHQHILAEVPHGVLV*QETVLP Trigger: AGGCAGTACAGTTTCCTGCAAAACAAGGACACCATG...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CCA 72 bp | TATCTGCTAGGTGAGGCAGGAGTCAGGAGGAGGAACTaGCTCAGGATTCAAGCGCATACACTAACTGGTAAA | + |
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Preference number: 3 (lower is better) Translates to: YLLGEAGVRRRN*LRIQAHTLTGK Trigger: TTTACCAGTTAGTGTATGCGCTTGAATCCTGAGCCAGTTCCTCCTCCTGACTCCTGCCTCACCTAGCAGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR TCA 72 bp | GTTAGAGAGAGACTAGTGGTGCCCAGAGACACAGCATaGTTCACCCAGGGTCATAGGACTAAGGACTATCAT | + |
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Preference number: 3 (lower is better) Translates to: VRERLVVPRDTA*FTQGHRTKDYH Trigger: ATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCACCACTAGTCTCTCTCTAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR GCA 72 bp | GATGACTCAGGGATAGCCATCCAATATCTTTCTGCTTaGCTATGTCATCAGTTCACAAGGACACAGGGCCAC | + |
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Preference number: 3 (lower is better) Translates to: DDSGIAIQYLSA*LCHQFTRTQGH Trigger: GTGGCCCTGTGTCCTTGTGAACTGATGACATAGGCAAGCAGAAAGATATTGGATGGCTATCCCTGAGTCATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CAA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGACTTGCAAAAACTGTTTaGGAAACTCAAGAAGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: SIYQGPGPPVLLARTPTRLAKTV*ETQEAE Trigger: CTCAGCTTCTTGAGTTTCCAAAACAGTTTTTGCAAG...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CAA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGGAAAGTCGCTTTCTGTaGTGTGAACAGAAAGGTAGA | + |
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Preference number: 3 (lower is better) Translates to: CPETQHDSPRVIGLRTIMESRFL*CEQKGR Trigger: TCTACCTTTCTGTTCACACAACAGAAAGCGACTTTC...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR GCA 72 bp | ATTCAGGGAAGGGAAGAACCTTTACACAGTCCGAAGTaGTGTGAGTTTAAGGTCTCAGCTCTCATTCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: IQGREEPLHSPK*CEFKVSALILE Trigger: CTCCAGAATGAGAGCTGAGACCTTAAACTCACAGCACTTCGGACTGTGTAAAGGTTCTTCCCTTCCCTGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR CCA 72 bp | GGTGTGCTCATTCTGCTAGGTGATAATGTGCCTGCATaGTGTCCTTGTTTTGCAGGAAACTGTACTGCCTTT | + |
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Preference number: 3 (lower is better) Translates to: GVLILLGDNVPA*CPCFAGNCTAF Trigger: AAAGGCAGTACAGTTTCCTGCAAAACAAGGACACCATGCAGGCACATTATCACCTAGCAGAATGAGCACACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
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| 3UTR-3UTR CAA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCCTGGTAGACCAGAACTaGACAGAGATGGAAAGCATC | + |
|
Preference number: 3 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGLVDQN*TEMESI Trigger: GATGCTTTCCATCTCTGTCAAGTTCTGGTCTACCAG...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR TCA 72 bp | CCTCCTGCACTTGGAGATGTATACAGTAGCAGGGTCTaGATGAGAATTTCTTGGCATTTCAGGAGCAAACAT | + |
|
Preference number: 3 (lower is better) Translates to: PPALGDVYSSRV*MRISWHFRSKH Trigger: ATGTTTGCTCCTGAAATGCCAAGAAATTCTCATTCAGACCCTGCTACTGTATACATCTCCAAGTGCAGGAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CCA 72 bp | CGAAGTGCTGTGAGTTTAAGGTCTCAGCTCTCATTCTaGAGTTCATCATCAGGGTCTATCACTATTTGGTGT | + |
|
Preference number: 3 (lower is better) Translates to: RSAVSLRSQLSF*SSSSGSITIWC Trigger: ACACCAAATAGTGATAGACCCTGATGATGAACTCCAGAATGAGAGCTGAGACCTTAAACTCACAGCACTTCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CCA 72 bp | TTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATaGGAGCATCAAGGGCTACAGATAGCAACACTGTGG | + |
|
Preference number: 3 (lower is better) Translates to: FKCHLTVFLLVP*EHQGLQIATLW Trigger: CCACAGTGTTGCTATCTGTAGCCCTTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR TCA 72 bp | CTGCACTTGGAGATGTATACAGTAGCAGGGTCTGAATaGGAATTTCTTGGCATTTCAGGAGCAAACATCTCA | + |
|
Preference number: 3 (lower is better) Translates to: LHLEMYTVAGSE*EFLGISGANIS Trigger: TGAGATGTTTGCTCCTGAAATGCCAAGAAATTCTCATTCAGACCCTGCTACTGTATACATCTCCAAGTGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CCA 72 bp | GCTAAAAATAGTGTGTTCACATGCATCATAGGGCTGTaGGTGGAGATGTACACACAGTCAAATGATGCCATT | + |
|
Preference number: 3 (lower is better) Translates to: AKNSVFTCIIGL*VEMYTQSNDAI Trigger: AATGGCATCATTTGACTGTGTGTACATCTCCACCCACAGCCCTATGATGCATGTGAACACACTATTTTTAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR-3UTR CAA 90 bp | ATGCTAACGACTCAACCAGCAGTCAGCCAAAAGGACAAGAAAAGGTTTCAACTCCTGAATGAGAATTTCTaGGCATTTCAGGAGCAAACA | + |
|
Preference number: 3 (lower is better) Translates to: MLTTQPAVSQKDKKRFQLLNENF*AFQEQT Trigger: TGTTTGCTCCTGAAATGCCAAGAAATTCTCATTCAG...GAGTTGAAACCTTTTCTTGTCCTTTTGGCTGACTGCTGGTTGAGTCGTTAGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CCA 72 bp | ACCTACCAGATTCTACTTGTTAATTGGCTCCTCTACTaGCAGCTATTTCAGCAACAGTTCTTTGAGTTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: TYQILLVNWLLY*QLFQQQFFEFS Trigger: AGAAAACTCAAAGAACTGTTGCTGAAATAGCTGCCAGTAGAGGAGCCAATTAACAAGTAGAATCTGGTAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGATCGGCACAGTCTGGTTaGCATGAAAGCTGCCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: SIYQGPGPPVLLARTPTRSAQSG*HESCPL Trigger: CAGAGGGCAGCTTTCATGCCAACCAGACTGTGCCGA...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR TCA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCAGGTATCTGTCTATGCTaGGGGACACCAGGACGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: ELQPYQNKPHQHILAEVPGICLC*GTPGRR Trigger: CCTACGTCCTGGTGTCCCTCAGCATAGACAGATACC...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR TCA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCACATTCTGGAATCCTGTaGTCTTTGCATCTTGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ELQPYQNKPHQHILAEVPHSGIL*SLHLAG Trigger: CCCTGCAAGATGCAAAGATCACAGGATTCCAGAATG...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR GCA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCAGATGGCCTTGATTTTTaGCTTAGAGATGAGCCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: ELQPYQNKPHQHILAEVPDGLDF*LRDEPS Trigger: CGAGGGCTCATCTCTAAGGCAAAAATCAAGGCCATC...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR GCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGGGCTTGGAGAGAATCTaGATCTCGTGTCTCTCGCTT | + |
|
Preference number: 4 (lower is better) Translates to: CPETQHDSPRVIGLRTIMGLERI*ISCLSL Trigger: AAGCGAGAGACACGAGATGCAGATTCTCTCCAAGCC...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGATCATGGGGTAAACGATaGCATGGTATCTGTCTATGC | + |
|
Preference number: 4 (lower is better) Translates to: SIYQGPGPPVLLARTPTRSWGKR*HGICLC Trigger: GCATAGACAGATACCATGCCATCGTTTACCCCATGA...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGACTTGAAGAAACTTCATaGGGTAAACGATGGCATGGT | + |
|
Preference number: 4 (lower is better) Translates to: SIYQGPGPPVLLARTPTRLEETS*GKRWHG Trigger: ACCATGCCATCGTTTACCCCATGAAGTTTCTTCAAG...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR TCA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGATGTCTGGAAGGACGTTaGAGTTGTCTAATATGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: SIYQGPGPPVLLARTPTRCLEGR*SCLICQ Trigger: TTGACATATTAGACAACTTCAACGTCCTTCCAGACA...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CCA 90 bp | TGCCCAGAGACACAGCATGATTCACCCAGGGTCATAGGACTAAGGACTATCATGACTGCACCTCACCATTaGAAAGTGTCCTTTTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: CPETQHDSPRVIGLRTIMTAPHH*KVSFSQ Trigger: TTGGGAAAAGGACACTTTCCAATGGTGAGGTGCAGT...CATGATAGTCCTTAGTCCTATGACCCTGGGTGAATCATGCTGTGTCTCTGGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR TCA 90 bp | GTTTTGCAGGAAACTGTACTGCCTTTTTCACAAATCACAATGCTTGGGAGTTTGACAGTCTGGTTGGCATaGAAGCTGCCCTCTGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VLQETVLPFSQITMLGSLTVWLA*KLPSVR Trigger: CCTCACAGAGGGCAGCTTTCATGCCAACCAGACTGT...CAAACTCCCAAGCATTGTGATTTGTGAAAAAGGCAGTACAGTTTCCTGCAAAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR GCA 90 bp | ATGCTAACGACTCAACCAGCAGTCAGCCAAAAGGACAAGAAAAGGTTTCAACTCCTCCTCAGCCACCAGTaGTTCAGTGAACGTCACAAT | + |
|
Preference number: 4 (lower is better) Translates to: MLTTQPAVSQKDKKRFQLLLSHQ*FSERHN Trigger: ATTGTGACGTTCACTGAAGCACTGGTGGCTGAGGAG...GAGTTGAAACCTTTTCTTGTCCTTTTGGCTGACTGCTGGTTGAGTCGTTAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR GCA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCGTGATCTTTGCATCTTaGAGGGGGAGCAGATGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGVIFAS*RGSRWS Trigger: GCTCCATCTGCTCCCCCTGCAAGATGCAAAGATCAC...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CCA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCAGAAATCACCGTCTCATaGGTTTTGCTTTTCATCCAA | + |
|
Preference number: 4 (lower is better) Translates to: ELQPYQNKPHQHILAEVPEITVS*VLLFIQ Trigger: TTGGATGAAAAGCAAAACCCATGAGACGGTGATTTC...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CAA 72 bp | ATGGAAAGCATCTATCAAGGGCCTGGGCCTCCTGTTTaGCTAGCTAGGACACCTACCAGATTCTACTTGTTA | + |
|
Preference number: 4 (lower is better) Translates to: MESIYQGPGPPV*LARTPTRFYLL Trigger: TAACAAGTAGAATCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCTTTCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR GCA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCGAATCCTGTGATCTTTaGATCTTGCAGGGGGAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGESCDL*ILQGEQ Trigger: CTGCTCCCCCTGCAAGATGCAAAGATCACAGGATTC...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR TCA 90 bp | ATGCTAACGACTCAACCAGCAGTCAGCCAAAAGGACAAGAAAAGGTTTCAACTCTCCTTTTCCCAAATATaGTCAGCGTGGGAATGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: MLTTQPAVSQKDKKRFQLSFSQI*SAWEWR Trigger: TCTCCATTCCCACGCTGATCATATTTGGGAAAAGGA...GAGTTGAAACCTTTTCTTGTCCTTTTGGCTGACTGCTGGTTGAGTCGTTAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR GCA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAAGCCCTCGGTTGTAGCTaGAGCATAGTTTGCCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQALGCS*SIVCHL Trigger: CAGATGGCAAACTATGCTGCAGCTACAACCGAGGGC...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CCA 90 bp | GTTTTGCAGGAAACTGTACTGCCTTTTTCACAAATCACAATGCTTGGGAGTTTGGTCAAAGAGGAAGTATaGGCTCCAGCAGCAGATGAA | + |
|
Preference number: 4 (lower is better) Translates to: VLQETVLPFSQITMLGSLVKEEV*APAADE Trigger: TTCATCTGCTGCTGGAGCCCATACTTCCTCTTTGAC...CAAACTCCCAAGCATTGTGATTTGTGAAAAAGGCAGTACAGTTTCCTGCAAAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CCA 90 bp | ATGCTAACGACTCAACCAGCAGTCAGCCAAAAGGACAAGAAAAGGTTTCAACTCCTCGGTATGTCATTCTaGAATCCTGTGATCTTTGCA | + |
|
Preference number: 4 (lower is better) Translates to: MLTTQPAVSQKDKKRFQLLGMSF*NPVIFA Trigger: TGCAAAGATCACAGGATTCCAGAATGACATACCGAG...GAGTTGAAACCTTTTCTTGTCCTTTTGGCTGACTGCTGGTTGAGTCGTTAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CAA 72 bp | GTACTGCCTTTTTCACAAATCACAATGCTTGGGAGTTaGCTCTTGCTAACATTTCCTCCTGCACTTGGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: VLPFSQITMLGS*LLLTFPPALGD Trigger: ATCTCCAAGTGCAGGAGGAAATGTTAGCAAGAGCAAACTCCCAAGCATTGTGATTTGTGAAAAAGGCAGTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CAA 72 bp | CCTTTTTCACAAATCACAATGCTTGGGAGTTTGCTCTaGCTAACATTTCCTCCTGCACTTGGAGATGTATAC | + |
|
Preference number: 4 (lower is better) Translates to: PFSQITMLGSLL*LTFPPALGDVY Trigger: GTATACATCTCCAAGTGCAGGAGGAAATGTTAGCAAGAGCAAACTCCCAAGCATTGTGATTTGTGAAAAAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| 3UTR CAA 72 bp | CTAAGGACTATCATGATTAACGCATGTTTTCCAATTTaGGAAAACAAGGCCTGTGAAGATTTCAGACTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LRTIMINACFPI*ENKACEDFRLH Trigger: ATGGAGTCTGAAATCTTCACAGGCCTTGTTTTCCAAAATTGGAAAACATGCGTTAATCATGATAGTCCTTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS GCA 90 bp | GACGATGGTCATGTACGGGGTCCAGTAGGAGTCATCCGGCCACAGTaGCCAGCACTGCACCTCACCATTGGAAAGTGTCCTTTTCCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: DDGHVRGPVGVIRPQ*PALHLTIGKCPFPK Trigger: TTTGGGAAAAGGACACTTTCCAATGGTGAGGTGCAGTGCTGGGCACTGTGGCCGGATGACTCCTACTGGACCCCGTACATGACCATCGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000154644.2 |
||
| CDS-3UTR CAA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCATGTGATCTTTGCATCTaGCAGGGGGAGCAGATGGAG | + |
|
Preference number: 5 (lower is better) Translates to: ELQPYQNKPHQHILAEVPCDLCI*QGEQME Trigger: CTCCATCTGCTCCCCCTGCAAGATGCAAAGATCACA...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS CCA 90 bp | GAATCTGCATCTCGTGTCTCTCGCTTCTCTCTCGGTATGTCATTCTaGAATCCTGTGATCTTTGCATCTTGCAGGGGGAGCAGATGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: ESASRVSRFSLGMSF*NPVIFASCRGSRWS Trigger: GCTCCATCTGCTCCCCCTGCAAGATGCAAAGATCACAGGATTCCAGAATGACATACCGAGAGAGAAGCGAGAGACACGAGATGCAGATTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCAATGTCTGTCAAGATGTaGATCAGGCCCGTGAAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: ELQPYQNKPHQHILAEVPMSVKM*IRPVKE Trigger: CTCCTTCACGGGCCTGATCAACATCTTGACAGACAT...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGAGTCTGTGATGGCCAATaGTGTCACAAAGAAGGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: SIYQGPGPPVLLARTPTRVCDGQ*CHKEGH Trigger: ATGACCTTCTTTGTGACACAATTGGCCATCACAGAC...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | AGCATCTATCAAGGGCCTGGGCCTCCTGTTTTGCTAGCTAGGACACCTACCAGAGATGAGGACTTTGGCTaGCTTCTCTCCTTGAAGAAA | + |
|
Preference number: 5 (lower is better) Translates to: SIYQGPGPPVLLARTPTRDEDFG*LLSLKK Trigger: TTTCTTCAAGGAGAGAAGCAAGCCAAAGTCCTCATC...TCTGGTAGGTGTCCTAGCTAGCAAAACAGGAGGCCCAGGCCCTTGATAGATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | GAATTGCAGCCCTATCAAAATAAGCCCCACCAGCACATCCTTGCAGAGGTGCCAATGACGATGCTATACTaGATGGCCTTGATTTTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: ELQPYQNKPHQHILAEVPMTMLY*MALIFA Trigger: GGCAAAAATCAAGGCCATCAAGTATAGCATCGTCAT...TGGCACCTCTGCAAGGATGTGCTGGTGGGGCTTATTTTGATAGGGCTGCAATTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | ATGCTAACGACTCAACCAGCAGTCAGCCAAAAGGACAAGAAAAGGTTTCAACTCGGCTTGCTTCTCTCCTaGAAGAAACTTCATGGGGTA | + |
|
Preference number: 5 (lower is better) Translates to: MLTTQPAVSQKDKKRFQLGLLLS*KKLHGV Trigger: TACCCCATGAAGTTTCTTCAAGGAGAGAAGCAAGCC...GAGTTGAAACCTTTTCTTGTCCTTTTGGCTGACTGCTGGTTGAGTCGTTAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCTTGCCATCTGAGCAGTaGGAAATCACCGTCTCATGG | + |
|
Preference number: 5 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGLPSEQ*EITVSW Trigger: CCATGAGACGGTGATTTCCAACTGCTCAGATGGCAA...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAACACTGCACCTCACCATaGGAAAGTGTCCTTTTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQHCTSP*ESVLFP Trigger: TGGGAAAAGGACACTTTCCAATGGTGAGGTGCAGTG...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | ATGCTAACGACTCAACCAGCAGTCAGCCAAAAGGACAAGAAAAGGTTTCAACTCCTATACTTGATGGCCTaGATTTTTGCCTTAGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: MLTTQPAVSQKDKKRFQLLYLMA*IFALEM Trigger: CATCTCTAAGGCAAAAATCAAGGCCATCAAGTATAG...GAGTTGAAACCTTTTCTTGTCCTTTTGGCTGACTGCTGGTTGAGTCGTTAGCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | AACTTTCCTACAACAACCTGTACTTTCCTACAACAACCTTATTGCTCTCCAGGCACCGTCTCATGGGTTTaGCTTTTCATCCAAATAGTT | + |
|
Preference number: 5 (lower is better) Translates to: NFPTTTCTFLQQPYCSPGTVSWV*LFIQIV Trigger: AACTATTTGGATGAAAAGCAAAACCCATGAGACGGT...GCCTGGAGAGCAATAAGGTTGTTGTAGGAAAGTACAGGTTGTTGTAGGAAAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS-3UTR CAA 90 bp | CTTTATTTTAAATGCCACCTTACTGTCTTTTTACTTGTCCCATGGGAGCATCAAGTGTCTGGAAGGACGTaGAAGTTGTCTAATATGTCA | + |
|
Preference number: 5 (lower is better) Translates to: LYFKCHLTVFLLVPWEHQVSGRT*KLSNMS Trigger: TGACATATTAGACAACTTCAACGTCCTTCCAGACAC...TTGATGCTCCCATGGGACAAGTAAAAAGACAGTAAGGTGGCATTTAAAATAAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS TCA 72 bp | CTCGCTTCTCTCTCGGTATGTCATTCTGGAATCCTGTaGTCTTTGCATCTTGCAGGGGGAGCAGATGGAGCT | + |
|
Preference number: 6 (lower is better) Translates to: LASLSVCHSGIL*SLHLAGGADGA Trigger: AGCTCCATCTGCTCCCCCTGCAAGATGCAAAGATCACAGGATTCCAGAATGACATACCGAGAGAGAAGCGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000059650.11 |
||
| CDS CAA 90 bp | GAACAGGAACGAGAGGCTCCACGCTATTCCGATGAGGACTTTGGCTaGCTTCTCTCCTTGAAGAAACTTCATGGGGTAAACGATGGCATG | + |
|
Preference number: 6 (lower is better) Translates to: EQEREAPRYSDEDFG*LLSLKKLHGVNDGM Trigger: CATGCCATCGTTTACCCCATGAAGTTTCTTCAAGGAGAGAAGCAAGCCAAAGTCCTCATCGGAATAGCGTGGAGCCTCTCGTTCCTGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000133787.8 |
||
| CDS TCA 72 bp | TGGAGAACAGGAACGAGAGGCTCCACGCTATTCCGATaGGGACTTTGGCTTGCTTCTCTCCTTGAAGAAACT | + |
|
Preference number: 6 (lower is better) Translates to: WRTGTRGSTLFR*GLWLASLLEET Trigger: AGTTTCTTCAAGGAGAGAAGCAAGCCAAAGTCCTCATCGGAATAGCGTGGAGCCTCTCGTTCCTGTTCTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000059650.11 ENSMUST00000133787.8 ENSMUST00000154644.2 |
||
| CDS CAA 72 bp | CGAGAGGCTCCACGCTATTCCGATGAGGACTTTGGCTaGCTTCTCTCCTTGAAGAAACTTCATGGGGTAAAC | + |
|
Preference number: 6 (lower is better) Translates to: REAPRYSDEDFG*LLSLKKLHGVN Trigger: GTTTACCCCATGAAGTTTCTTCAAGGAGAGAAGCAAGCCAAAGTCCTCATCGGAATAGCGTGGAGCCTCTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000133787.8 |
||
| CDS CAA 90 bp | GAGGCTCCACGCTATTCCGATGAGGACTTTGGCTTGCTTCTCTCCTaGAAGAAACTTCATGGGGTAAACGATGGCATGGTATCTGTCTAT | + |
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Preference number: 6 (lower is better) Translates to: EAPRYSDEDFGLLLS*KKLHGVNDGMVSVY Trigger: ATAGACAGATACCATGCCATCGTTTACCCCATGAAGTTTCTTCAAGGAGAGAAGCAAGCCAAAGTCCTCATCGGAATAGCGTGGAGCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000133787.8 |
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| CDS CCA 72 bp | GGTTGTAGCTGCAGCATAGTTTGCCATCTGAGCAGTTaGAAATCACCGTCTCATGGGTTTTGCTTTTCATCC | + |
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Preference number: 6 (lower is better) Translates to: GCSCSIVCHLSS*KSPSHGFCFSS Trigger: GGATGAAAAGCAAAACCCATGAGACGGTGATTTCCAACTGCTCAGATGGCAAACTATGCTGCAGCTACAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000154644.2 |
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| CDS TCA 72 bp | AGGCATAGAAACGCTCCTTGGTGTCTGGAAGGACGTTaGAGTTGTCTAATATGTCAAAGAGGAAGTATGGGC | + |
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Preference number: 6 (lower is better) Translates to: RHRNAPWCLEGR*SCLICQRGSMG Trigger: GCCCATACTTCCTCTTTGACATATTAGACAACTTCAACGTCCTTCCAGACACCAAGGAGCGTTTCTATGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000154644.2 |
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| CDS CAA 72 bp | GTTGATCAGGCCCGTGAAGGAGTCTGTGATGGCCAATaGTGTCACAAAGAAGGTCATTCTGGACTTTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: VDQAREGVCDGQ*CHKEGHSGLSF Trigger: AAAAGAAAGTCCAGAATGACCTTCTTTGTGACACAATTGGCCATCACAGACTCCTTCACGGGCCTGATCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000133787.8 |
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| CDS CAA 72 bp | CCATCTGAGCAGTTGGAAATCACCGTCTCATGGGTTTaGCTTTTCATCCAAATAGTTCGGATCACAAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: PSEQLEITVSWV*LFIQIVRITRP Trigger: TGGCCTTGTGATCCGAACTATTTGGATGAAAAGCAAAACCCATGAGACGGTGATTTCCAACTGCTCAGATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000154644.2 |
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| CDS CAA 72 bp | CAGCAGATGAAAGCAAGGATTATGACGATGCTATACTaGATGGCCTTGATTTTTGCCTTAGAGATGAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: QQMKARIMTMLY*MALIFALEMSP Trigger: AGGGCTCATCTCTAAGGCAAAAATCAAGGCCATCAAGTATAGCATCGTCATAATCCTTGCTTTCATCTGCTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000059650.11 ENSMUST00000154644.2 |
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