Pregenerated sensors for NPS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073804Ensembl transcript IDs: ENSMUST00000097983.5, ENSMUST00000210697.2, ENSMUST00000210907.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTCATTTGAGGAAATCTCATTTTAAAGGAGAAATGGCATATACCTaGCACTGCACTTGGTGGCACAGCACAGGAAGACCACAGGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: SHLRKSHFKGEMAYT*HCTWWHSTGRPQEK Trigger: TTTCTCCTGTGGTCTTCCTGTGCTGTGCCACCAAGTGCAGTGGCAGGTATATGCCATTTCTCCTTTAAAATGAGATTTCCTCAAATGACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR-3UTR TCA 90 bp | CTTGAGATTCTTTTACAAACAGAAACAGCACAGCTGAGTCATTTGAGGAAATCTTCACAGGCAGAAGTTTaGGACAGGTTTGCAATTTTC | + |
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Preference number: 2 (lower is better) Translates to: LEILLQTETAQLSHLRKSSQAEV*DRFAIF Trigger: GAAAATTGCAAACCTGTCTCAAACTTCTGCCTGTGA...AGATTTCCTCAAATGACTCAGCTGTGCTGTTTCTGTTTGTAAAAGAATCTCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR CAA 90 bp | TTTCTTGAGATTCTTTTACAAACAGAAACAGCACAGCTGAGTCATTaGAGGAAATCTCATTTTAAAGGAGAAATGGCATATACCTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: FLEILLQTETAQLSH*RKSHFKGEMAYTCH Trigger: GTGGCAGGTATATGCCATTTCTCCTTTAAAATGAGATTTCCTCAAATGACTCAGCTGTGCTGTTTCTGTTTGTAAAAGAATCTCAAGAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR TCA 72 bp | AGAGGGGGCGAGCCCTTGCTGCAGGTACCAATTGGCTaGGCCATAGATCCAGGGGCACCATTCATCTTCTTA | + |
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Preference number: 3 (lower is better) Translates to: RGGEPLLQVPIG*AIDPGAPFIFL Trigger: TAAGAAGATGAATGGTGCCCCTGGATCTATGGCTCAGCCAATTGGTACCTGCAGCAAGGGCTCGCCCCCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR-3UTR CAA 90 bp | GGCATATACCTGCCACTGCACTTGGTGGCACAGCACAGGAAGACCACAGGAGAACTCACAGGCAGAAGTTaGAGACAGGTTTGCAATTTT | + |
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Preference number: 3 (lower is better) Translates to: GIYLPLHLVAQHRKTTGELTGRS*RQVCNF Trigger: AAAATTGCAAACCTGTCTCAAACTTCTGCCTGTGAG...TTCTCCTGTGGTCTTCCTGTGCTGTGCCACCAAGTGCAGTGGCAGGTATATGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR CCA 72 bp | AAAGGAGAAATGGCATATACCTGCCACTGCACTTGGTaGCACAGCACAGGAAGACCACAGGAGAAAAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: KGEMAYTCHCTW*HSTGRPQEKKH Trigger: GTGCTTTTTCTCCTGTGGTCTTCCTGTGCTGTGCCACCAAGTGCAGTGGCAGGTATATGCCATTTCTCCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR GCA 72 bp | TCTCATTTTAAAGGAGAAATGGCATATACCTGCCACTaGACTTGGTGGCACAGCACAGGAAGACCACAGGAG | + |
|
Preference number: 3 (lower is better) Translates to: SHFKGEMAYTCH*TWWHSTGRPQE Trigger: CTCCTGTGGTCTTCCTGTGCTGTGCCACCAAGTGCAGTGGCAGGTATATGCCATTTCTCCTTTAAAATGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR CCA 72 bp | TTTAAAGGAGAAATGGCATATACCTGCCACTGCACTTaGTGGCACAGCACAGGAAGACCACAGGAGAAAAAG | + |
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Preference number: 3 (lower is better) Translates to: FKGEMAYTCHCT*WHSTGRPQEKK Trigger: CTTTTTCTCCTGTGGTCTTCCTGTGCTGTGCCACCAAGTGCAGTGGCAGGTATATGCCATTTCTCCTTTAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGAGATTCTTTTACAAACAGAAACAGCACAGCTGAGTCATTTGAGGAAATCTTACCTGCCACTGCACTaGGTGGCACAGCACAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LEILLQTETAQLSHLRKSYLPLH*VAQHRK Trigger: CTTCCTGTGCTGTGCCACCAAGTGCAGTGGCAGGTA...AGATTTCCTCAAATGACTCAGCTGTGCTGTTTCTGTTTGTAAAAGAATCTCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR-3UTR CAA 90 bp | ATGAATCCCTCCCCTCCGTATTCGTGGAAGTTTCTAGCTAAGCACAGAAATCGTCTCACAGGCAGAAGTTaGAGACAGGTTTGCAATTTT | + |
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Preference number: 3 (lower is better) Translates to: MNPSPPYSWKFLAKHRNRLTGRS*RQVCNF Trigger: AAAATTGCAAACCTGTCTCAAACTTCTGCCTGTGAG...ACGATTTCTGTGCTTAGCTAGAAACTTCCACGAATACGGAGGGGAGGGATTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| 3UTR-3UTR CAA 90 bp | CTTGAGATTCTTTTACAAACAGAAACAGCACAGCTGAGTCATTTGAGGAAATCTCTCACAGGCAGAAGTTaGAGACAGGTTTGCAATTTT | + |
|
Preference number: 3 (lower is better) Translates to: LEILLQTETAQLSHLRKSLTGRS*RQVCNF Trigger: AAAATTGCAAACCTGTCTCAAACTTCTGCCTGTGAG...AGATTTCCTCAAATGACTCAGCTGTGCTGTTTCTGTTTGTAAAAGAATCTCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| CDS-3UTR CCA 90 bp | ATGAATCCCTCCCCTCCGTATTCGTGGAAGTTTCTAGCTAAGCACAGAAATCGTGCTTCCCAGGCACCTTaGAAGAGAGGACCGGATAAC | + |
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Preference number: 4 (lower is better) Translates to: MNPSPPYSWKFLAKHRNRASQAP*KRGPDN Trigger: GTTATCCGGTCCTCTCTTCCAAGGTGCCTGGGAAGC...ACGATTTCTGTGCTTAGCTAGAAACTTCCACGAATACGGAGGGGAGGGATTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| CDS-3UTR CCA 90 bp | CTTGAGATTCTTTTACAAACAGAAACAGCACAGCTGAGTCATTTGAGGAAATCTGCTTCCCAGGCACCTTaGAAGAGAGGACCGGATAAC | + |
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Preference number: 4 (lower is better) Translates to: LEILLQTETAQLSHLRKSASQAP*KRGPDN Trigger: GTTATCCGGTCCTCTCTTCCAAGGTGCCTGGGAAGC...AGATTTCCTCAAATGACTCAGCTGTGCTGTTTCTGTTTGTAAAAGAATCTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| CDS-3UTR GCA 90 bp | CTTGAGATTCTTTTACAAACAGAAACAGCACAGCTGAGTCATTTGAGGAAATCTCTGAGCCGACTCCGTTaGGAAAGGACCTTTTCATCG | + |
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Preference number: 4 (lower is better) Translates to: LEILLQTETAQLSHLRKSLSRLR*ERTFSS Trigger: CGATGAAAAGGTCCTTTCGCAACGGAGTCGGCTCAG...AGATTTCCTCAAATGACTCAGCTGTGCTGTTTCTGTTTGTAAAAGAATCTCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| CDS-3UTR GCA 90 bp | ATAGATCCAGGGGCACCATTCATCTTCTTACTGGAATTTCTTGAGATTCTTTTACTGAGCCGACTCCGTTaGGAAAGGACCTTTTCATCG | + |
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Preference number: 4 (lower is better) Translates to: IDPGAPFIFLLEFLEILLLSRLR*ERTFSS Trigger: CGATGAAAAGGTCCTTTCGCAACGGAGTCGGCTCAG...TAAAAGAATCTCAAGAAATTCCAGTAAGAAGATGAATGGTGCCCCTGGATCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| CDS-3UTR CAA 90 bp | ATTTACTCTGAGCCCGTTAGGAGAAGGGGGATATCTGAGGATGAGGAGGGAAGCCCTGAGCCGACTCCGTaGCGAAAGGACCTTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: IYSEPVRRRGISEDEEGSPEPTP*RKDLFI Trigger: GATGAAAAGGTCCTTTCGCAACGGAGTCGGCTCAGG...GCTTCCCTCCTCATCCTCAGATATCCCCCTTCTCCTAACGGGCTCAGAGTAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| CDS-3UTR CAA 90 bp | TCAAGATCAAAGCCGATGAATCCCTCCCCTCCGTATTCGTGGAAGTTTCTAGCTCCTGAGCCGACTCCGTaGCGAAAGGACCTTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: SRSKPMNPSPPYSWKFLAPEPTP*RKDLFI Trigger: GATGAAAAGGTCCTTTCGCAACGGAGTCGGCTCAGG...AGCTAGAAACTTCCACGAATACGGAGGGGAGGGATTCATCGGCTTTGATCTTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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| CDS-3UTR CAA 90 bp | ATGAATCCCTCCCCTCCGTATTCGTGGAAGTTTCTAGCTAAGCACAGAAATCGTCCTGAGCCGACTCCGTaGCGAAAGGACCTTTTCATC | + |
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Preference number: 5 (lower is better) Translates to: MNPSPPYSWKFLAKHRNRPEPTP*RKDLFI Trigger: GATGAAAAGGTCCTTTCGCAACGGAGTCGGCTCAGG...ACGATTTCTGTGCTTAGCTAGAAACTTCCACGAATACGGAGGGGAGGGATTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000097983.5 ENSMUST00000210697.2 ENSMUST00000210907.2 |
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