RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NPRL3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020289

Ensembl transcript IDs: ENSMUST00000020530.12, ENSMUST00000109389.9, ENSMUST00000124640.8, ENSMUST00000129010.2, ENSMUST00000136903.8, ENSMUST00000137950.8, ENSMUST00000141859.8, ENSMUST00000149526.2

Found 414 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTCGCGGAGTCTGAGCCCACGGCGAGCTGGCACAGTGGGTCGGGCTaGAGAGACGGTCACGTCAGCATCCATTCCCGGCAGCCTGGCAGC +
Preference number: 1 (lower is better)
Translates to: VAESEPTASWHSGSG*RDGHVSIHSRQPGS
Trigger: GCTGCCAGGCTGCCGGGAATGGATGCTGACGTGACCGTCTCTGCAGCCCGACCCACTGTGCCAGCTCGCCGTGGGCTCAGACTCCGCGAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR GCA 90 bp CCTCGCTCCGCCTCTTCTGCAGATTCCTTCCACCCCCGCGCTACATaGCTTCTGCGCAGACGCAGGTTCCAGTCCCCGCCCTCTCCGCGC +
Preference number: 1 (lower is better)
Translates to: PRSASSADSFHPRAT*LLRRRRFQSPPSPR
Trigger: GCGCGGAGAGGGCGGGGACTGGAACCTGCGTCTGCGCAGAAGGCATGTAGCGCGGGGGTGGAAGGAATCTGCAGAAGAGGCGGAGCGAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR GCA 90 bp CCGCCTCTTCTGCAGATTCCTTCCACCCCCGCGCTACATGCCTTCTaGGCAGACGCAGGTTCCAGTCCCCGCCCTCTCCGCGCTTCCGGT +
Preference number: 1 (lower is better)
Translates to: PPLLQIPSTPALHAF*ADAGSSPRPLRASG
Trigger: ACCGGAAGCGCGGAGAGGGCGGGGACTGGAACCTGCGTCTGCGCAGAAGGCATGTAGCGCGGGGGTGGAAGGAATCTGCAGAAGAGGCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 90 bp GGTGTCCGTGACCCTGCTCCCCGACACCGAGCAGCCTCCATTTCTTaGACGAGCCCGCCGCCCAGGGAATGCCAGAGCAGGATCCCTAGT +
Preference number: 1 (lower is better)
Translates to: GVRDPAPRHRAASIS*TSPPPRECQSRIPS
Trigger: ACTAGGGATCCTGCTCTGGCATTCCCTGGGCGGCGGGCTCGTCCAAGAAATGGAGGCTGCTCGGTGTCGGGGAGCAGGGTCACGGACACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 90 bp CCATCCACACACAGGCATGCTGCCCGGGCTCATGTGAGCAGTGCCTaGAAGACGGCAATAACAGGGTCCTCATGGGTGGTCACCACCAGC +
Preference number: 1 (lower is better)
Translates to: PSTHRHAARAHVSSA*KTAITGSSWVVTTS
Trigger: GCTGGTGGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTGTGTGGATGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 90 bp CATCCTGGGCTAGCTGCTGCAGGTTCTTCACAGCAGACGTGGTCTTaGTCACCCGCACCAGAGCCGGGGAGCAGTCAATGGGAAGCTCAC +
Preference number: 1 (lower is better)
Translates to: HPGLAAAGSSQQTWS*SPAPEPGSSQWEAH
Trigger: GTGAGCTTCCCATTGACTGCTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp GACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTaGGGCAGAAGGGAGGTTGTTTCCATCCACACACAGGCATGCTGC +
Preference number: 1 (lower is better)
Translates to: DRAGAAYLPKASQEL*GRREVVSIHTQACC
Trigger: GCAGCATGCCTGTGTGTGGATGGAAACAACCTCCCTTCTGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR CCA 90 bp GTGGTGGTGGCAGCAGCCCGTATAGGTATTGGTCATGCAGGGGAGTaGACACAGAAGCCCTTGCGCTTCTATGTCCAGGGCAGCCCATGG +
Preference number: 1 (lower is better)
Translates to: VVVAAARIGIGHAGE*TQKPLRFYVQGSPW
Trigger: CCATGGGCTGCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATGACCAATACCTATACGGGCTGCTGCCACCACCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR GCA 90 bp TGGAAGACCTGCAGCAAGGCCAGATCGGCATCCTGGGCTAGCTGCTaGAGGTTCTTCACAGCAGACGTGGTCTTGATCACCCGCACCAGA +
Preference number: 1 (lower is better)
Translates to: WKTCSKARSASWASC*RFFTADVVLITRTR
Trigger: TCTGGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGCCTTGCTGCAGGTCTTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp AACTGGAAGACCTGCAGCAAGGCCAGATCGGCATCCTGGGCTAGCTaGTGCAGGTTCTTCACAGCAGACGTGGTCTTGATCACCCGCACC +
Preference number: 1 (lower is better)
Translates to: NWKTCSKARSASWAS*CRFFTADVVLITRT
Trigger: GGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGCCTTGCTGCAGGTCTTCCAGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp GTTTCCATCCACACACAGGCATGCTGCCCGGGCTCATGTGAGCAGTaGCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGTCACCAC +
Preference number: 1 (lower is better)
Translates to: VSIHTQACCPGSCEQ*LEDGNNRVLMGGHH
Trigger: GTGGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTGTGTGGATGGAAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 90 bp CTCTGCGGCAGAAGGGAGGTTGTTTCCATCCACACACAGGCATGCTaGCCGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGG +
Preference number: 1 (lower is better)
Translates to: LCGRREVVSIHTQAC*PGSCEQCLEDGNNR
Trigger: CCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTGTGTGGATGGAAACAACCTCCCTTCTGCCGCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 90 bp ATCAGCTTGGCCTCTCGAGTGAGGTACTGGCAGCGGCGCTCCTCATaGTGCAGGACAGTAGCAATTCGGCGGGACAAGTTGTGTAGACAG +
Preference number: 1 (lower is better)
Translates to: ISLASRVRYWQRRSS*CRTVAIRRDKLCRQ
Trigger: CTGTCTACACAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGAGGCCAAGCTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp GAACTCTGCGGCAGAAGGGAGGTTGTTTCCATCCACACACAGGCATaGTGCCCGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAAC +
Preference number: 1 (lower is better)
Translates to: ELCGRREVVSIHTQA*CPGSCEQCLEDGNN
Trigger: GTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTGTGTGGATGGAAACAACCTCCCTTCTGCCGCAGAGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 90 bp CGTTCCCTCAAGGACCGTGAACTCTGTAGTGGTCCCTCCAAGCTGTaGCAGGCCCTGGCCATTGATAAGAGCTTTGACCAGCGAGACCTG +
Preference number: 1 (lower is better)
Translates to: RSLKDRELCSGPSKL*QALAIDKSFDQRDL
Trigger: CAGGTCTCGCTGGTCAAAGCTCTTATCAATGGCCAGGGCCTGGCACAGCTTGGAGGGACCACTACAGAGTTCACGGTCCTTGAGGGAACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR CCA 90 bp CAGCTTCAGTCCAACCTGGCAAACATGCGGAGGTCCTCAGGGTTTTaGGCTGCAGGCACATTGAGGATAGCAGCCCGCTCATGCTCTGAG +
Preference number: 1 (lower is better)
Translates to: QLQSNLANMRRSSGF*AAGTLRIAARSCSE
Trigger: CTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGTTGGACTGAAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 90 bp CCAACACACCCTCTGTGGCCCACCCTATCCCAAGGCAGAGCCTTCTaGTCCGGGACCCTTGAAAATTCAGTCCGGGTTCAGAGAGGATGT +
Preference number: 1 (lower is better)
Translates to: PTHPLWPTLSQGRAF*SGTLENSVRVQRGC
Trigger: ACATCCTCTCTGAACCCGGACTGAATTTTCAAGGGTCCCGGACCAGAAGGCTCTGCCTTGGGATAGGGTGGGCCACAGAGGGTGTGTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR TCA 90 bp GGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACTaGGAAGTAGCAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCC +
Preference number: 1 (lower is better)
Translates to: GSSQWEAHSAETSRH*EVARHGTGGWLSGS
Trigger: GGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAGTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
ENSMUST00000149526.2
3UTR TCA 90 bp TGGGACAGAACCAGATCTAGAGAACCTGGGTTCCAATCCTACTGGTaGAAGGTTTCTACACTCGCCCCGCCCTGTCCCGCCCCTAGAGTC +
Preference number: 1 (lower is better)
Translates to: WDRTRSREPGFQSYW*KVSTLAPPCPAPRV
Trigger: GACTCTAGGGGCGGGACAGGGCGGGGCGAGTGTAGAAACCTTTCACCAGTAGGATTGGAACCCAGGTTCTCTAGATCTGGTTCTGTCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR GCA 90 bp AGCTTGGCCTCTCGAGTGAGGTACTGGCAGCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGGCGGGACAAGTTGTGTAGACAGTTT +
Preference number: 1 (lower is better)
Translates to: SLASRVRYWQRRSSC*RTVAIRRDKLCRQF
Trigger: AAACTGTCTACACAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGAGGCCAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CCA 90 bp CAGGTGAGCTGCCAACTGGAAGACCTCACTTGGATCCTAGCCCCATaGCATCAGAGATGGAAAGAGGCAAACCCGCAGTCCTGCAGGGAA +
Preference number: 1 (lower is better)
Translates to: QVSCQLEDLTWILAP*HQRWKEANPQSCRE
Trigger: TTCCCTGCAGGACTGCGGGTTTGCCTCTTTCCATCTCTGATGCCATGGGGCTAGGATCCAAGTGAGGTCTTCCAGTTGGCAGCTCACCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CCA 90 bp GAGTGGACACAGAAGCCCTTGCGCTTCTATGTCCAGGGCAGCCCATaGGTCAGTGTGGTAGACAGAGTGGCTGAACAGATGGATCAGCCT +
Preference number: 1 (lower is better)
Translates to: EWTQKPLRFYVQGSP*VSVVDRVAEQMDQP
Trigger: AGGCTGATCCATCTGTTCAGCCACTCTGTCTACCACACTGACCCATGGGCTGCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR CCA 90 bp AGGACCGTGAACTCTGTAGTGGTCCCTCCAAGCTGTGCCAGGCCCTaGCCATTGATAAGAGCTTTGACCAGCGAGACCTGGCTCAAGATG +
Preference number: 1 (lower is better)
Translates to: RTVNSVVVPPSCARP*PLIRALTSETWLKM
Trigger: CATCTTGAGCCAGGTCTCGCTGGTCAAAGCTCTTATCAATGGCCAGGGCCTGGCACAGCTTGGAGGGACCACTACAGAGTTCACGGTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR TCA 90 bp GTTTTGGGCTGCAGGCACATTGAGGATAGCAGCCCGCTCATGCTCTaGGAGGCTAGCCAGCAGGTTCTCTGTCATCCTCTTGTTCAGTGG +
Preference number: 1 (lower is better)
Translates to: VLGCRHIEDSSPLML*EASQQVLCHPLVQW
Trigger: CCACTGAACAAGAGGATGACAGAGAACCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp TCAGGGTTTTGGGCTGCAGGCACATTGAGGATAGCAGCCCGCTCATaGTCTGAGAGGCTAGCCAGCAGGTTCTCTGTCATCCTCTTGTTC +
Preference number: 1 (lower is better)
Translates to: SGFWAAGTLRIAARS*SERLASRFSVILLF
Trigger: GAACAAGAGGATGACAGAGAACCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp CAGTGGGTAGATGATGACAGCCTTGCCCCAGTATACCAGGTGAGCTaGCAACTGGAAGACCTCACTTGGATCCTAGCCCCATGGCATCAG +
Preference number: 1 (lower is better)
Translates to: QWVDDDSLAPVYQVS*QLEDLTWILAPWHQ
Trigger: CTGATGCCATGGGGCTAGGATCCAAGTGAGGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGGCAAGGCTGTCATCATCTACCCACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CCA 90 bp AAAGAAACAGGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATaGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTAC +
Preference number: 1 (lower is better)
Translates to: KETGKENLARTDGRS*DGNCRENCSASGEY
Trigger: GTACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGTTTCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CCA 90 bp CTTGCCCCAGTATACCAGGTGAGCTGCCAACTGGAAGACCTCACTTaGATCCTAGCCCCATGGCATCAGAGATGGAAAGAGGCAAACCCG +
Preference number: 1 (lower is better)
Translates to: LAPVYQVSCQLEDLT*ILAPWHQRWKEANP
Trigger: CGGGTTTGCCTCTTTCCATCTCTGATGCCATGGGGCTAGGATCCAAGTGAGGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGGCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR TCA 90 bp GAAGCCGTACCACACCAGATGTGCACAGGCTGTCATAAGCTTCTTTaGGGTCCCGAGCCAGCTTGCACTTGGGTAGGATGTGCTGGAATG +
Preference number: 1 (lower is better)
Translates to: EAVPHQMCTGCHKLL*GPEPACTWVGCAGM
Trigger: CATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTCGGGACCTCAAAGAAGCTTATGACAGCCTGTGCACATCTGGTGTGGTACGGCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CCA 90 bp AGCTCACTCAGCAGAGACTTCTCGTCACTGAGAAGTAGCAAGGCATaGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCCTCAGGA +
Preference number: 1 (lower is better)
Translates to: SSLSRDFSSLRSSKA*YGRMAFRLRSIASG
Trigger: TCCTGAGGCTATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAGTGACGAGAAGTCTCTGCTGAGTGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
ENSMUST00000149526.2
3UTR CCA 90 bp CAGCTTACCCTATCCCAAGACTTCCCTTCCCATCATCCCTTCCTTTaGGTCAGTCACTTCCCACTCGAGGAGTACGGGTGCACAACCTCA +
Preference number: 1 (lower is better)
Translates to: QLTLSQDFPSHHPFL*VSHFPLEEYGCTTS
Trigger: TGAGGTTGTGCACCCGTACTCCTCGAGTGGGAAGTGACTGACCCAAAGGAAGGGATGATGGGAAGGGAAGTCTTGGGATAGGGTAAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 90 bp GCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATaGGTGGTCACCACCAGCACACTGCGGAATTTGTCAAAGAGCATG +
Preference number: 1 (lower is better)
Translates to: AHVSSAWKTAITGSS*VVTTSTLRNLSKSM
Trigger: CATGCTCTTTGACAAATTCCGCAGTGTGCTGGTGGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 90 bp ACCCTTCAGACCCACATCACTCCTGGAATGGTAGAAGAGAGTGAGTaGAGTGGGGGAAGGGAGCAGCTTACCCTATCCCAAGACTTCCCT +
Preference number: 1 (lower is better)
Translates to: TLQTHITPGMVEESE*SGGREQLTLSQDFP
Trigger: AGGGAAGTCTTGGGATAGGGTAAGCTGCTCCCTTCCCCCACTTCACTCACTCTCTTCTACCATTCCAGGAGTGATGTGGGTCTGAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR GCA 90 bp TCAAAACCATCTGTAAAGGGATCCAATGTCCTCTTCTGGTGCATCTaGAGCAAGGCCAGATCGGCATCCTGGGCTAGCTGCTGCAGGTTC +
Preference number: 1 (lower is better)
Translates to: SKPSVKGSNVLFWCI*SKARSASWASCCRF
Trigger: GAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGCCTTGCTGCAGATGCACCAGAAGAGGACATTGGATCCCTTTACAGATGGTTTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR GCA 90 bp GATAGCTCAAAACCATCTGTAAAGGGATCCAATGTCCTCTTCTGGTaGATCTGCAGCAAGGCCAGATCGGCATCCTGGGCTAGCTGCTGC +
Preference number: 1 (lower is better)
Translates to: DSSKPSVKGSNVLFW*ICSKARSASWASCC
Trigger: GCAGCAGCTAGCCCAGGATGCCGATCTGGCCTTGCTGCAGATGCACCAGAAGAGGACATTGGATCCCTTTACAGATGGTTTTGAGCTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CCA 90 bp CACACTGGCATTGGGAGACATGACATAGACGTTGTTCTCACACAGTaGGTAGATGATGACAGCCTTGCCCCAGTATACCAGGTGAGCTGC +
Preference number: 1 (lower is better)
Translates to: HTGIGRHDIDVVLTQ*VDDDSLAPVYQVSC
Trigger: GCAGCTCACCTGGTATACTGGGGCAAGGCTGTCATCATCTACCCACTGTGTGAGAACAACGTCTATGTCATGTCTCCCAATGCCAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp AAAGTCACATCCTGGAAGACCTTCTCCAGCTCAGCAATATTAAGCTaGCGTAAGGACCAGATTGAAGAGGGAGGCTGGTGGGTAGGAGAG +
Preference number: 1 (lower is better)
Translates to: KVTSWKTFSSSAILS*RKDQIEEGGWWVGE
Trigger: CTCTCCTACCCACCAGCCTCCCTCTTCAATCTGGTCCTTACGGCAGCTTAATATTGCTGAGCTGGAGAAGGTCTTCCAGGATGTGACTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 90 bp ATGGCTAGGTGGTTAAGAGCACTTCCTGCTCTTAACCAGAGGTCCTaGGTTCAATTCCCACCAACCACATGGTGGCATGTAATGCCCTCT +
Preference number: 1 (lower is better)
Translates to: MARWLRALPALNQRS*VQFPPTTWWHVMPS
Trigger: AGAGGGCATTACATGCCACCATGTGGTTGGTGGGAATTGAACTCAGGACCTCTGGTTAAGAGCAGGAAGTGCTCTTAACCACCTAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 90 bp GATGGCTTTCAGGCTCCGTTCAATAGCCTCAGGAGGAATCAGACTTaGAGCTGCATAGTGGATCTTGTGGGGCAGACAGAAACTCACTTC +
Preference number: 1 (lower is better)
Translates to: DGFQAPFNSLRRNQT*SCIVDLVGQTETHF
Trigger: GAAGTGAGTTTCTGTCTGCCCCACAAGATCCACTATGCAGCTTCAAGTCTGATTCCTCCTGAGGCTATTGAACGGAGCCTGAAAGCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 90 bp AAACAAGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTaGTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATGAT +
Preference number: 1 (lower is better)
Translates to: KQGGWRDGSVVKSTD*SSRGPEFNSQQTHD
Trigger: ATCATGTGTTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR GCA 90 bp CCACACCCAATGGCTCACAACCTCTGTAACTCTAGCTCCAAGGCATaGTTTCTTCTGACCTCTGAGGGCACACATACACACAAAACCATA +
Preference number: 1 (lower is better)
Translates to: PHPMAHNLCNSSSKA*FLLTSEGTHTHKTI
Trigger: TATGGTTTTGTGTGTATGTGTGCCCTCAGAGGTCAGAAGAAAGCATGCCTTGGAGCTAGAGTTACAGAGGTTGTGAGCCATTGGGTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 90 bp GACAAGGACATAACCTGTATGTGTATAAAGAAAGGACTTGGACTCTaGAGACACATCCTGGGGGCTGGAGAGATGGCTAGGTGGTTAAGA +
Preference number: 1 (lower is better)
Translates to: DKDITCMCIKKGLGL*RHILGAGEMARWLR
Trigger: TCTTAACCACCTAGCCATCTCTCCAGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTTCTTTATACACATACAGGTTATGTCCTTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 90 bp AGAGGAAAAACATCAACGTGCAGGTGTATACACCTAGGAACAGAATaGGCTGAACAGGTGTGTTTAGACACTTTCCAGGGCAGCTCCACA +
Preference number: 1 (lower is better)
Translates to: RGKTSTCRCIHLGTE*AEQVCLDTFQGSST
Trigger: TGTGGAGCTGCCCTGGAAAGTGTCTAAACACACCTGTTCAGCTCATTCTGTTCCTAGGTGTATACACCTGCACGTTGATGTTTTTCCTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 90 bp TGCTCTGAACATCTGATTGGACTTAGTTGTCCTCCAAAACAAGGCTaGATCTCTGCATGTCTCATCATTAAAGACATGTATTTTAGTAAA +
Preference number: 1 (lower is better)
Translates to: CSEHLIGLSCPPKQG*ISACLIIKDMYFSK
Trigger: TTTACTAAAATACATGTCTTTAATGATGAGACATGCAGAGATGCAGCCTTGTTTTGGAGGACAACTAAGTCCAATCAGATGTTCAGAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp GGTCGGCCAGATGCCAGCGCCGGTGAGAGGGGGCGCCGCGTCGCGGAGTCTGAGTCTCGAGTGAGGTACTaGCAGCGGCGCTCCTCATGC +
Preference number: 2 (lower is better)
Translates to: GRPDASAGERGRRVAESESRVRY*QRRSSC
Trigger: GCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGA...CTCAGACTCCGCGACGCGGCGCCCCCTCTCACCGGCGCTGGCATCTGGCCGACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR GCA 90 bp GGTCGGCCAGATGCCAGCGCCGGTGAGAGGGGGCGCCGCGTCGCGGAGTCTGAGCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGG +
Preference number: 2 (lower is better)
Translates to: GRPDASAGERGRRVAESERRSSC*RTVAIR
Trigger: CCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG...CTCAGACTCCGCGACGCGGCGCCCCCTCTCACCGGCGCTGGCATCTGGCCGACC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp GGTCGGCCAGATGCCAGCGCCGGTGAGAGGGGGCGCCGCGTCGCGGAGTCTGAGCACCAACTCTGGCTGTaGAGGGGACATCATCCTCTC +
Preference number: 2 (lower is better)
Translates to: GRPDASAGERGRRVAESEHQLWL*RGHHPL
Trigger: GAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGTG...CTCAGACTCCGCGACGCGGCGCCCCCTCTCACCGGCGCTGGCATCTGGCCGACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR CCA 90 bp GGTCGGCCAGATGCCAGCGCCGGTGAGAGGGGGCGCCGCGTCGCGGAGTCTGAGATCCACACCACCATCTaGATGAGCTGGGTCTCCTGT +
Preference number: 2 (lower is better)
Translates to: GRPDASAGERGRRVAESEIHTTI*MSWVSC
Trigger: ACAGGAGACCCAGCTCATCCAGATGGTGGTGTGGAT...CTCAGACTCCGCGACGCGGCGCCCCCTCTCACCGGCGCTGGCATCTGGCCGACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp ACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCCCGCGTCGCGGAGTCTaGGCCCACGGCGAGCTGGCA +
Preference number: 2 (lower is better)
Translates to: TNSGCEGDIILSQSGLLFPRRGV*AHGELA
Trigger: TGCCAGCTCGCCGTGGGCTCAGACTCCGCGACGCGG...GAAGAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp TGCAGGTTCTTCACAGCAGACGTGGTCTTGATCACCCGCACCAGAGCCGGGGAGGCTTGGCCTCTCGAGTaGGGTACTGGCAGCGGCGCT +
Preference number: 2 (lower is better)
Translates to: CRFFTADVVLITRTRAGEAWPLE*GTGSGA
Trigger: AGCGCCGCTGCCAGTACCTCACTCGAGAGGCCAAGC...CTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp GCTGCAGGCACATTGAGGATAGCAGCCCGCTCATGCTCTGAGAGGCTAGCCAGCGAGCATTGGGTGTGCTaGGGCTGCGGCCACCAACTC +
Preference number: 2 (lower is better)
Translates to: AAGTLRIAARSCSERLASEHWVC*GCGHQL
Trigger: GAGTTGGTGGCCGCAGCCTCAGCACACCCAATGCTC...GCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp AGCTGGCACAGTGGGTCGGGCTGCAGAGACGGTCACGTCAGCATCCATTCCCGGGGGGCTCCTCTTCGCTaGGTGAGGCCATTAGGCAAA +
Preference number: 2 (lower is better)
Translates to: SWHSGSGCRDGHVSIHSRGAPLR*VRPLGK
Trigger: TTTGCCTAATGGCCTCACCCAGCGAAGAGGAGCCCC...CCGGGAATGGATGCTGACGTGACCGTCTCTGCAGCCCGACCCACTGTGCCAGCT
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp GCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACTGAGAGCTTGGCCTCTCGAGTaGGGTACTGGCAGCGGCGCT +
Preference number: 2 (lower is better)
Translates to: AGEQSMGSSLSRDFSSLRAWPLE*GTGSGA
Trigger: AGCGCCGCTGCCAGTACCTCACTCGAGAGGCCAAGC...TCTCAGTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp CGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGCAGCAGACGTGGTCTTaGTCACCCGCACCAGAGCCG +
Preference number: 2 (lower is better)
Translates to: RAHVSSAWKTAITGSSWVQQTWS*SPAPEP
Trigger: CGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTG...CACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTGCTTCCTGCTCTTCTaGTGTTCCCAGCCCCACACC +
Preference number: 2 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNCFLLF*CSQPHT
Trigger: GGTGTGGGGCTGGGAACAGCAGAAGAGCAGGAAGCA...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp CCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTGCGGCATCCTGGGCTAGCTGCTaGAGGTTCTTCACAGCAGAC +
Preference number: 2 (lower is better)
Translates to: PTGLGLPIFLRPVRNSAASWASC*RFFTAD
Trigger: GTCTGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGA...TGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTTCTCGAGTGAGGTACTaGCAGCGGCGCTCCTCATGC +
Preference number: 2 (lower is better)
Translates to: MAGHGTGTAGRTVQLAGSSRVRY*QRRSSC
Trigger: GCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGA...ACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 90 bp GCATCCTGGGCTAGCTGCTGCAGGTTCTTCACAGCAGACGTGGTCTaGATCACCCGCACCAGAGCCGGGGAGCAGTCAATGGGAAGCTCA +
Preference number: 2 (lower is better)
Translates to: ASWASCCRFFTADVV*ITRTRAGEQSMGSS
Trigger: TGAGCTTCCCATTGACTGCTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 90 bp CTGGCAAACATGCGGAGGTCCTCAGGGTTTTGGGCTGCAGGCACATaGAGGATAGCAGCCCGCTCATGCTCTGAGAGGCTAGCCAGCAGG +
Preference number: 2 (lower is better)
Translates to: LANMRRSSGFWAAGT*RIAARSCSERLASR
Trigger: CCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ATAGCAGCCCGCTCATGCTCTGAGAGGCTAGCCAGCAGGTTCTCTGTCATCCTCAGGTATGCAGCTGGATaGGGAGCCGGCGCTGCAGCA +
Preference number: 2 (lower is better)
Translates to: IAARSCSERLASRFSVILRYAAG*GAGAAA
Trigger: TGCTGCAGCGCCGGCTCCTCATCCAGCTGCATACCT...GAGGATGACAGAGAACCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp AGTGAAGGAGCCTGGCAAACATGCGGAGGTCCTCAGGGTTTTGGGCTGCAGGCAATGAGGAGCCGGCGCTaGAGCATCCACACCACCATC +
Preference number: 2 (lower is better)
Translates to: SEGAWQTCGGPQGFGLQAMRSRR*SIHTTI
Trigger: GATGGTGGTGTGGATGCTGCAGCGCCGGCTCCTCAT...TGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGCTCCTTCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACCATGGTACGGGCGGATaGCTTTCAGGCTCCGTTCAA +
Preference number: 2 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNHGTGG*LSGSVQ
Trigger: TTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATG...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGCCAGATCGGCATCCTaGGCTAGCTGCTGCAGGTTC +
Preference number: 2 (lower is better)
Translates to: RAHVSSAWKTAITGSSWVARSAS*ASCCRF
Trigger: GAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGC...CACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTACCATCTGGATGAGCTaGGTCTCCTGTGCAGGGGGA +
Preference number: 2 (lower is better)
Translates to: MAGHGTGTAGRTVQLAGSTIWMS*VSCAGG
Trigger: TCCCCCTGCACAGGAGACCCAGCTCATCCAGATGGT...ACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp GGACAGATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGGCTCCTCTTCGCTaGGTGAGGCCATTAGGCAAA +
Preference number: 2 (lower is better)
Translates to: GQMAGHGTGTAGRTVQLAGAPLR*VRPLGK
Trigger: TTTGCCTAATGGCCTCACCCAGCGAAGAGGAGCCCC...CGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp GCCACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTG +
Preference number: 2 (lower is better)
Translates to: ATNSGCEGDIILSQSGLLADTSS*SARISL
Trigger: CAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGC...GAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp GGACAGATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGCCAGTCAGGAACTCTaGGGCAGAAGGGAGGTTGTT +
Preference number: 2 (lower is better)
Translates to: GQMAGHGTGTAGRTVQLAASQEL*GRREVV
Trigger: AACAACCTCCCTTCTGCCGCAGAGTTCCTGACTGGC...CGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp CATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTGGCAAATGCCCCAGAGCATGCTaGAGCAGTGTTGGGTGCCCA +
Preference number: 2 (lower is better)
Translates to: HDLLQMVAATEVVKEPGKCPRAC*SSVGCP
Trigger: TGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCA...TTTGCCAGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR GCA 90 bp CATGCAGGGGAGTGGACACAGAAGCCCTTGCGCTTCTATGTCCAGGGCAGCCCAGGAGCCTGGCAAACATaGGGAGGTCCTCAGGGTTTT +
Preference number: 2 (lower is better)
Translates to: HAGEWTQKPLRFYVQGSPGAWQT*GGPQGF
Trigger: AAAACCCTGAGGACCTCCGCATGTTTGCCAGGCTCC...TGGGCTGCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CTCGCAGTCGGGGCTCCTCTTCGCTGGGTGAGGCCATTAGGCAAACATAGGTATTCTCGAGTGAGGTACTaGCAGCGGCGCTCCTCATGC +
Preference number: 2 (lower is better)
Translates to: LAVGAPLRWVRPLGKHRYSRVRY*QRRSSC
Trigger: GCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGA...ATACCTATGTTTGCCTAATGGCCTCACCCAGCGAAGAGGAGCCCCGACTGCGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp GCCACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCGAGCCAGCTTGCACTTaGGTAGGATGTGCTGGAATG +
Preference number: 2 (lower is better)
Translates to: ATNSGCEGDIILSQSGLLEPACT*VGCAGM
Trigger: CATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTC...GAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGCCGGGGAGCAGTCAATaGGAAGCTCACTCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: RAHVSSAWKTAITGSSWVPGSSQ*EAHSAE
Trigger: CTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGG...CACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CGGGAGAACTGTTCAGCTAGCGGGGAGTACAGACACACACTGGCATTGGGAGACGCCAGATCGGCATCCTaGGCTAGCTGCTGCAGGTTC +
Preference number: 2 (lower is better)
Translates to: RENCSASGEYRHTLALGDARSAS*ASCCRF
Trigger: GAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGC...GTCTCCCAATGCCAGTGTGTGTCTGTACTCCCCGCTAGCTGAACAGTTCTCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 90 bp GCCAGAGGGCTCCTGAACTCCGATAAAGAAACAGGCAAGGAAAACTaGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGCCGGGAG +
Preference number: 2 (lower is better)
Translates to: ARGLLNSDKETGKEN*ARTDGRSWDGNCRE
Trigger: CTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGTTTCTTTATCGGAGTTCAGGAGCCCTCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 90 bp GCCCGTATAGGTATTGGTCATGCAGGGGAGTGGACACAGAAGCCCTaGCGCTTCTATGTCCAGGGCAGCCCATGGGTCAGTGTGGTAGAC +
Preference number: 2 (lower is better)
Translates to: ARIGIGHAGEWTQKP*RFYVQGSPWVSVVD
Trigger: GTCTACCACACTGACCCATGGGCTGCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATGACCAATACCTATACGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ACAGCAGACGTGGTCTTGATCACCCGCACCAGAGCCGGGGAGCAGTCAATGGGATGTCATAAGCTTCTTTaGGGTCCCGAGCCAGCTTGC +
Preference number: 2 (lower is better)
Translates to: TADVVLITRTRAGEQSMGCHKLL*GPEPAC
Trigger: GCAAGCTGGCTCGGGACCTCAAAGAAGCTTATGACA...TCCCATTGACTGCTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp CATGCAGGGGAGTGGACACAGAAGCCCTTGCGCTTCTATGTCCAGGGCAGCCCATGTCATAAGCTTCTTTaGGGTCCCGAGCCAGCTTGC +
Preference number: 2 (lower is better)
Translates to: HAGEWTQKPLRFYVQGSPCHKLL*GPEPAC
Trigger: GCAAGCTGGCTCGGGACCTCAAAGAAGCTTATGACA...TGGGCTGCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp CTGCAGATTCCTTCCACCCCCGCGCTACATGCCTTCTGCGCAGACGCAGGTTCCGAGACTTCTCGTCACTaGGAAGTAGCAAGGCATGGT +
Preference number: 2 (lower is better)
Translates to: LQIPSTPALHAFCADAGSETSRH*EVARHG
Trigger: ACCATGCCTTGCTACTTCTCAGTGACGAGAAGTCTC...GGAACCTGCGTCTGCGCAGAAGGCATGTAGCGCGGGGGTGGAAGGAATCTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp GCCACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCGAGACTTCTCGTCACTaGGAAGTAGCAAGGCATGGT +
Preference number: 2 (lower is better)
Translates to: ATNSGCEGDIILSQSGLLETSRH*EVARHG
Trigger: ACCATGCCTTGCTACTTCTCAGTGACGAGAAGTCTC...GAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp ACAGGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGCCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGG +
Preference number: 2 (lower is better)
Translates to: TGKENLARTDGRSWDGNCRRSSC*RTVAIR
Trigger: CCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG...GCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp AGTGAAGGAGCCTGGCAAACATGCGGAGGTCCTCAGGGTTTTGGGCTGCAGGCAGCATCCTGGGCTAGCTaGTGCAGGTTCTTCACAGCA +
Preference number: 2 (lower is better)
Translates to: SEGAWQTCGGPQGFGLQAASWAS*CRFFTA
Trigger: TGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGATGC...TGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGCTCCTTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp TCCTCTTGTTCAGTGGTGAGTCCCCACTGGGGAGCAGCTCAGCACTTGAGTTGTATGAGGAGCCGGCGCTaGAGCATCCACACCACCATC +
Preference number: 2 (lower is better)
Translates to: SSCSVVSPHWGAAQHLSCMRSRR*SIHTTI
Trigger: GATGGTGGTGTGGATGCTGCAGCGCCGGCTCCTCAT...ACAACTCAAGTGCTGAGCTGCTCCCCAGTGGGGACTCACCACTGAACAAGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp CCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTGCGGCACCTCCAAAACAAGGCTaGATCTCTGCATGTCTCATC +
Preference number: 2 (lower is better)
Translates to: PTGLGLPIFLRPVRNSAAPPKQG*ISACLI
Trigger: GATGAGACATGCAGAGATGCAGCCTTGTTTTGGAGG...TGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp GAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACCACAAAGCCCAACCATaGCTGCCCCATAGCTGCTTC +
Preference number: 2 (lower is better)
Translates to: ENLARTDGRSWDGNCRENHKAQP*LPHSCF
Trigger: GAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTG...GTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CCAGAGCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACCATGGTACGGGCGGATaGCTTTCAGGCTCCGTTCAA +
Preference number: 2 (lower is better)
Translates to: PEPGSSQWEAHSAETSRHHGTGG*LSGSVQ
Trigger: TTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATG...GTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
ENSMUST00000149526.2
3UTR-3UTR CCA 90 bp ACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCCATGGTACGGGCGGATaGCTTTCAGGCTCCGTTCAA +
Preference number: 2 (lower is better)
Translates to: TNSGCEGDIILSQSGLLFHGTGG*LSGSVQ
Trigger: TTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATG...GAAGAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp GGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTACAGACACACACTGGCATCCGGGGAGCAGTCAATaGGAAGCTCACTCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: GTAGRTVQLAGSTDTHWHPGSSQ*EAHSAE
Trigger: CTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGG...ATGCCAGTGTGTGTCTGTACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp AGCCTTGCCCCAGTATACCAGGTGAGCTGCCAACTGGAAGACCTCACTTGGATCGCCAGATCGGCATCCTaGGCTAGCTGCTGCAGGTTC +
Preference number: 2 (lower is better)
Translates to: SLAPVYQVSCQLEDLTWIARSAS*ASCCRF
Trigger: GAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGC...GATCCAAGTGAGGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGGCAAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp ATAGCAGCCCGCTCATGCTCTGAGAGGCTAGCCAGCAGGTTCTCTGTCATCCTCACCATCTGGATGAGCTaGGTCTCCTGTGCAGGGGGA +
Preference number: 2 (lower is better)
Translates to: IAARSCSERLASRFSVILTIWMS*VSCAGG
Trigger: TCCCCCTGCACAGGAGACCCAGCTCATCCAGATGGT...GAGGATGACAGAGAACCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ATTGGGACAGAACCAGATCTAGAGAACCTGGGTTCCAATCCTACTGGTGAAAGGTCTCCGCGCTTCCGGTaGCCTGGCCTGTGCTGGCGG +
Preference number: 2 (lower is better)
Translates to: IGTEPDLENLGSNPTGERSPRFR*PGLCWR
Trigger: CCGCCAGCACAGGCCAGGCCACCGGAAGCGCGGAGA...CCTTTCACCAGTAGGATTGGAACCCAGGTTCTCTAGATCTGGTTCTGTCCCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp GAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACCCGGCCGGAAAGGGATaGCAAGGACATAACCTGTAT +
Preference number: 2 (lower is better)
Translates to: ENLARTDGRSWDGNCRENPAGKG*QGHNLY
Trigger: ATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGG...GTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp TCCTCTTGTTCAGTGGTGAGTCCCCACTGGGGAGCAGCTCAGCACTTGAGTTGTCCCCAGTATACCAGGTaGGCTGCCAACTGGAAGACC +
Preference number: 2 (lower is better)
Translates to: SSCSVVSPHWGAAQHLSCPQYTR*AANWKT
Trigger: GGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGG...ACAACTCAAGTGCTGAGCTGCTCCCCAGTGGGGACTCACCACTGAACAAGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCGAGCCAGAGGGCTCCTaGACTCCGATAAAGAAACAG +
Preference number: 2 (lower is better)
Translates to: TNSGCEGDIILSQSGLLFEPEGS*TPIKKQ
Trigger: CTGTTTCTTTATCGGAGTTCAGGAGCCCTCTGGCTC...GAAGAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp AGGGTCATGTCGTCACTGCTGGTTGGGGAGCCAAAGCTTAGAGCATTGGGTGTGACACCACCATCTGGATaGGCTGGGTCTCCTGTGCAG +
Preference number: 2 (lower is better)
Translates to: RVMSSLLVGEPKLRALGVTPPSG*AGSPVQ
Trigger: CTGCACAGGAGACCCAGCTCATCCAGATGGTGGTGT...CACACCCAATGCTCTAAGCTTTGGCTCCCCAACCAGCAGTGACGACATGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp GGGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCGCTGGGTGAGGCCATTAGGCTGAGGACCTTCATTTaGATCAGCCATAGCAGACAC +
Preference number: 2 (lower is better)
Translates to: GTSSSRSRGSSSLGEAIRLRTFI*ISHSRH
Trigger: GTGTCTGCTATGGCTGATGCAAATGAAGGTCCTCAG...CCTAATGGCCTCACCCAGCGAAGAGGAGCCCCGACTGCGAGAGGATGATGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTGTAATCATAGCACTTaGAGGACAGAGGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNCNHST*RTEAGG
Trigger: TCCTCCTGCCTCTGTCCTCCAAGTGCTATGATTACA...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp GGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACTCTCGAGTGAGGTACTaGCAGCGGCGCTCCTCATGC +
Preference number: 2 (lower is better)
Translates to: GLKRITKPNHGCPIAASDSRVRY*QRRSSC
Trigger: GCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGA...GTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCCAGGCAAGGAAAACTTaGCCAGGACAGATGGCAGGT +
Preference number: 2 (lower is better)
Translates to: TNSGCEGDIILSQSGLLFQARKT*PGQMAG
Trigger: ACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTG...GAAGAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCCTCAGGAGGATGCTGCAGCAGTGTTaGGTGCCCAACAAACCGTAC +
Preference number: 2 (lower is better)
Translates to: QGMVRADGFQAPFNSLRRMLQQC*VPNKPY
Trigger: GTACGGTTTGTTGGGCACCCAACACTGCTGCAGCAT...CCTCCTGAGGCTATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp ACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCCTGGAAGACCTCACTTaGATCCTAGCCCCATGGCAT +
Preference number: 2 (lower is better)
Translates to: TNSGCEGDIILSQSGLLFLEDLT*ILAPWH
Trigger: ATGCCATGGGGCTAGGATCCAAGTGAGGTCTTCCAG...GAAGAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CAA 90 bp TGTGGCCCACCCTATCCCAAGGCAGAGCCTTCTGGTCCGGGACCCTaGAAAATTCAGTCCGGGTTCAGAGAGGATGTCTTGATGGCAATC +
Preference number: 2 (lower is better)
Translates to: CGPPYPKAEPSGPGP*KIQSGFREDVLMAI
Trigger: GATTGCCATCAAGACATCCTCTCTGAACCCGGACTGAATTTTCAAGGGTCCCGGACCAGAAGGCTCTGCCTTGGGATAGGGTGGGCCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CAA 90 bp CCTTGCCCCAGTATACCAGGTGAGCTGCCAACTGGAAGACCTCACTaGGATCCTAGCCCCATGGCATCAGAGATGGAAAGAGGCAAACCC +
Preference number: 2 (lower is better)
Translates to: PCPSIPGELPTGRPH*DPSPMASEMERGKP
Trigger: GGGTTTGCCTCTTTCCATCTCTGATGCCATGGGGCTAGGATCCAAGTGAGGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGGCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR TCA 90 bp GCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGTCAAAGGACTTGGACTCTaGAGACACATCCTGGGGGCT +
Preference number: 2 (lower is better)
Translates to: AHVSSAWKTAITGSSWVVKGLGL*RHILGA
Trigger: AGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTT...GACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGGCTTGGCCTCTCGAGTaGGGTACTGGCAGCGGCGCT +
Preference number: 2 (lower is better)
Translates to: TRDRPERDDKDITCMCIKAWPLE*GTGSGA
Trigger: AGCGCCGCTGCCAGTACCTCACTCGAGAGGCCAAGC...CTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ATAGCAGCCCGCTCATGCTCTGAGAGGCTAGCCAGCAGGTTCTCTGTCATCCTCGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTG +
Preference number: 2 (lower is better)
Translates to: IAARSCSERLASRFSVILADTSS*SARISL
Trigger: CAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGC...GAGGATGACAGAGAACCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp CACGGAAGTAGTGAAGGAGCCTGGCAAACATGCGGAGGTCCTCAGGGTTTTGGGGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTG +
Preference number: 2 (lower is better)
Translates to: HGSSEGAWQTCGGPQGFGADTSS*SARISL
Trigger: CAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGC...CCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGCTCCTTCACTACTTCCGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp CATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTGGCAAAGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTG +
Preference number: 2 (lower is better)
Translates to: HDLLQMVAATEVVKEPGKADTSS*SARISL
Trigger: CAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGC...TTTGCCAGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp AGTGAAGGAGCCTGGCAAACATGCGGAGGTCCTCAGGGTTTTGGGCTGCAGGCAGAGACTTCTCGTCACTaGGAAGTAGCAAGGCATGGT +
Preference number: 2 (lower is better)
Translates to: SEGAWQTCGGPQGFGLQAETSRH*EVARHG
Trigger: ACCATGCCTTGCTACTTCTCAGTGACGAGAAGTCTC...TGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGCTCCTTCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp TTGTTCAGTGGTGAGTCCCCACTGGGGAGCAGCTCAGCACTTGAGTTGTCCATACCCCAGTATACCAGGTaGGCTGCCAACTGGAAGACC +
Preference number: 2 (lower is better)
Translates to: LFSGESPLGSSSALELSIPQYTR*AANWKT
Trigger: GGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGG...TATGGACAACTCAAGTGCTGAGCTGCTCCCCAGTGGGGACTCACCACTGAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp TTGTTCAGTGGTGAGTCCCCACTGGGGAGCAGCTCAGCACTTGAGTTGTCCATAACACCACCATCTGGATaGGCTGGGTCTCCTGTGCAG +
Preference number: 2 (lower is better)
Translates to: LFSGESPLGSSSALELSITPPSG*AGSPVQ
Trigger: CTGCACAGGAGACCCAGCTCATCCAGATGGTGGTGT...TATGGACAACTCAAGTGCTGAGCTGCTCCCCAGTGGGGACTCACCACTGAACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp GATCTAGAGAACCTGGGTTCCAATCCTACTGGTGAAAGGTTTCTACACTCGCCCAGGTATGCAGCTGGATaGGGAGCCGGCGCTGCAGCA +
Preference number: 2 (lower is better)
Translates to: DLENLGSNPTGERFLHSPRYAAG*GAGAAA
Trigger: TGCTGCAGCGCCGGCTCCTCATCCAGCTGCATACCT...GGGCGAGTGTAGAAACCTTTCACCAGTAGGATTGGAACCCAGGTTCTCTAGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR GCA 90 bp CTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGG +
Preference number: 2 (lower is better)
Translates to: LKRITKPNHGCPIAASDQRRSSC*RTVAIR
Trigger: CCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG...CTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp CATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTGGCAAACTCAGGGTTTTGGGCTaGAGGCACATTGAGGATAGC +
Preference number: 2 (lower is better)
Translates to: HDLLQMVAATEVVKEPGKLRVLG*RHIEDS
Trigger: GCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAG...TTTGCCAGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp ACACTGCGGAATTTGTCAAAGAGCATGAGTAGCTGGGAGCGCCGAGTGTTCTCAACCTGCCCCAGAGCATaGTGCAGCAGTGTTGGGTGC +
Preference number: 2 (lower is better)
Translates to: TLRNLSKSMSSWERRVFSTCPRA*CSSVGC
Trigger: GCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGT...TGAGAACACTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAATTCCGCAGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp CATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGTCACCGAGCCAGCTTGCACTTaGGTAGGATGTGCTGGAATG +
Preference number: 2 (lower is better)
Translates to: HVSSAWKTAITGSSWVVTEPACT*VGCAGM
Trigger: CATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTC...GGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp GCCACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCGTTGTTCTCACACAGTaGGTAGATGATGACAGCCTT +
Preference number: 2 (lower is better)
Translates to: ATNSGCEGDIILSQSGLLVVLTQ*VDDDSL
Trigger: AAGGCTGTCATCATCTACCCACTGTGTGAGAACAAC...GAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp TGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGTCACCACCAGGCAAGGAAAACTTaGCCAGGACAGATGGCAGGT +
Preference number: 2 (lower is better)
Translates to: CEQCLEDGNNRVLMGGHHQARKT*PGQMAG
Trigger: ACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTG...GTGGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CTCATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGGGGGCTCCTCTTCGCTaGGTGAGGCCATTAGGCAAA +
Preference number: 2 (lower is better)
Translates to: LIVHDLLQMVAATEVVKEGAPLR*VRPLGK
Trigger: TTTGCCTAATGGCCTCACCCAGCGAAGAGGAGCCCC...CTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAATGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp GGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACGCCAGTCAGGAACTCTaGGGCAGAAGGGAGGTTGTT +
Preference number: 2 (lower is better)
Translates to: GLKRITKPNHGCPIAASDASQEL*GRREVV
Trigger: AACAACCTCCCTTCTGCCGCAGAGTTCCTGACTGGC...GTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp CCAGAGCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACCTGAGGACCTTCATTTaGATCAGCCATAGCAGACAC +
Preference number: 2 (lower is better)
Translates to: PEPGSSQWEAHSAETSRHLRTFI*ISHSRH
Trigger: GTGTCTGCTATGGCTGATGCAAATGAAGGTCCTCAG...GTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp AACAGGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGGAGCCAGCTTGCACTTaGGTAGGATGTGCTGGAATG +
Preference number: 2 (lower is better)
Translates to: NRQGKLGQDRWQVMGRELEPACT*VGCAGM
Trigger: CATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTC...CAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTGTTGTTCTCACACAGTaGGTAGATGATGACAGCCTT +
Preference number: 2 (lower is better)
Translates to: MAGHGTGTAGRTVQLAGSVVLTQ*VDDDSL
Trigger: AAGGCTGTCATCATCTACCCACTGTGTGAGAACAAC...ACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp GCAATAACAGGGTCCTCATGGGTGGTCACCACCAGCACACTGCGGAATTTGTCAAGGTCCTCAGGGTTTTaGGCTGCAGGCACATTGAGG +
Preference number: 2 (lower is better)
Translates to: AITGSSWVVTTSTLRNLSRSSGF*AAGTLR
Trigger: CCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCT...TGACAAATTCCGCAGTGTGCTGGTGGTGACCACCCATGAGGACCCTGTTATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 90 bp CGGCGCTCCTCATGCTGCAGGACAGTAGCAATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACTGATGGATCAGCATTGGCCCTCAGT +
Preference number: 2 (lower is better)
Translates to: RRSSCCRTVAIRRDK*CRQFITDGSALALS
Trigger: ACTGAGGGCCAATGCTGATCCATCAGTGATAAACTGTCTACACAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR CAA 90 bp ATAACAGGGTCCTCATGGGTGGTCACCACCAGCACACTGCGGAATTaGTCAAAGAGCATGAGTAGCTGGGAGCGCCGAGTGTTCTCATTG +
Preference number: 2 (lower is better)
Translates to: ITGSSWVVTTSTLRN*SKSMSSWERRVFSL
Trigger: CAATGAGAACACTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAATTCCGCAGTGTGCTGGTGGTGACCACCCATGAGGACCCTGTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ACCAACTCTGGCTGTGAAGGGGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCCACCTAGGAACAGAATaGGCTGAACAGGTGTGTTTA +
Preference number: 2 (lower is better)
Translates to: TNSGCEGDIILSQSGLLFHLGTE*AEQVCL
Trigger: TAAACACACCTGTTCAGCTCATTCTGTTCCTAGGTG...GAAGAGGAGCCCCGACTGCGAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp TCACTGAGAAGTAGCAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCATGCTGGAATGGGGACTaGGGACCTTCATTTGCATCA +
Preference number: 2 (lower is better)
Translates to: SLRSSKAWYGRMAFRLRSCWNGD*GPSFAS
Trigger: TGATGCAAATGAAGGTCCTCAGTCCCCATTCCAGCA...TGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp GCAATAACAGGGTCCTCATGGGTGGTCACCACCAGCACACTGCGGAATTTGTCAGAGCCAGAGGGCTCCTaGACTCCGATAAAGAAACAG +
Preference number: 2 (lower is better)
Translates to: AITGSSWVVTTSTLRNLSEPEGS*TPIKKQ
Trigger: CTGTTTCTTTATCGGAGTTCAGGAGCCCTCTGGCTC...TGACAAATTCCGCAGTGTGCTGGTGGTGACCACCCATGAGGACCCTGTTATTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp CAGACACACACTGGCATTGGGAGACATGACATAGACGTTGTTCTCACACAGTGGCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGG +
Preference number: 2 (lower is better)
Translates to: QTHTGIGRHDIDVVLTQWRRSSC*RTVAIR
Trigger: CCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG...CCACTGTGTGAGAACAACGTCTATGTCATGTCTCCCAATGCCAGTGTGTGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp GCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCCTCAGGAGGAATCCTGAGGACCTTCATTTaGATCAGCCATAGCAGACAC +
Preference number: 2 (lower is better)
Translates to: AWYGRMAFRLRSIASGGILRTFI*ISHSRH
Trigger: GTGTCTGCTATGGCTGATGCAAATGAAGGTCCTCAG...GATTCCTCCTGAGGCTATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp TCCACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATACCGGGGAGCAGTCAATaGGAAGCTCACTCAGCAGAG +
Preference number: 2 (lower is better)
Translates to: STRDRPERDDKDITCMCIPGSSQ*EAHSAE
Trigger: CTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGG...TATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp AGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTGTGAGGACCATCTGGATGAGCTaGGTCTCCTGTGCAGGGGGA +
Preference number: 2 (lower is better)
Translates to: RQEDQEFKVILNYKASVRTIWMS*VSCAGG
Trigger: TCCCCCTGCACAGGAGACCCAGCTCATCCAGATGGT...CCTCACACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp CATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTGGCAAATTCCCGCTTTGGAGATaGATCTGTTTTGGAGACCTG +
Preference number: 2 (lower is better)
Translates to: HDLLQMVAATEVVKEPGKFPLWR*ICFGDL
Trigger: CAGGTCTCCAAAACAGATCCATCTCCAAAGCGGGAA...TTTGCCAGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR TCA 90 bp AGGGTCATGTCGTCACTGCTGGTTGGGGAGCCAAAGCTTAGAGCATTGGGTGTGTGGCATTGGGAGACATaGCATAGACGTTGTTCTCAC +
Preference number: 2 (lower is better)
Translates to: RVMSSLLVGEPKLRALGVWHWET*HRRCSH
Trigger: GTGAGAACAACGTCTATGTCATGTCTCCCAATGCCA...CACACCCAATGCTCTAAGCTTTGGCTCCCCAACCAGCAGTGACGACATGACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp ATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTAATGTCCTCTTCTGGTaGATCTGCAGCAAGGCCAGA +
Preference number: 2 (lower is better)
Translates to: IVHDLLQMVAATEVVKEPNVLFW*ICSKAR
Trigger: TCTGGCCTTGCTGCAGATGCACCAGAAGAGGACATT...AGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAAT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp CCCACCAACCACATGGTGGCATGTAATGCCCTCTTCTGGTGTCTGAAGACAGCAGGAGAGATGGCTAGGTaGTTAAGAGCACTTCCTGCT +
Preference number: 2 (lower is better)
Translates to: PTNHMVACNALFWCLKTAGEMAR*LRALPA
Trigger: AGCAGGAAGTGCTCTTAACCACCTAGCCATCTCTCC...TGCTGTCTTCAGACACCAGAAGAGGGCATTACATGCCACCATGTGGTTGGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ACACTGCGGAATTTGTCAAAGAGCATGAGTAGCTGGGAGCGCCGAGTGTTCTCACAGGCAAGGAAAACTTaGCCAGGACAGATGGCAGGT +
Preference number: 2 (lower is better)
Translates to: TLRNLSKSMSSWERRVFSQARKT*PGQMAG
Trigger: ACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTG...TGAGAACACTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAATTCCGCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTACACCACCATCTGGATaGGCTGGGTCTCCTGTGCAG +
Preference number: 2 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGTPPSG*AGSPVQ
Trigger: CTGCACAGGAGACCCAGCTCATCCAGATGGTGGTGT...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTTGCTTCCTGCTCTTCTaGTGTTCCCAGCCCCACACC +
Preference number: 2 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGCFLLF*CSQPHT
Trigger: GGTGTGGGGCTGGGAACAGCAGAAGAGCAGGAAGCA...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ACACTGCGGAATTTGTCAAAGAGCATGAGTAGCTGGGAGCGCCGAGTGTTCTCAGAGATGGATCTGTTTTaGAGACCTGCCCCAGAGCAT +
Preference number: 2 (lower is better)
Translates to: TLRNLSKSMSSWERRVFSEMDLF*RPAPEH
Trigger: ATGCTCTGGGGCAGGTCTCCAAAACAGATCCATCTC...TGAGAACACTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAATTCCGCAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp CAGACACACACTGGCATTGGGAGACATGACATAGACGTTGTTCTCACACAGTGGCGAAAACAAGGGGGCTaGAGAGATGGCTCAGTGGTT +
Preference number: 2 (lower is better)
Translates to: QTHTGIGRHDIDVVLTQWRKQGG*RDGSVV
Trigger: AACCACTGAGCCATCTCTCCAGCCCCCTTGTTTTCG...CCACTGTGTGAGAACAACGTCTATGTCATGTCTCCCAATGCCAGTGTGTGTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CAA 90 bp GGGCAGGCATCCACTTGCTGTCAGTTCCACCATTCAGAGATAAGGTaGGGGAAGGACAGTTCTAGGATCAGAATTCAGACTGAGATTCCC +
Preference number: 2 (lower is better)
Translates to: GQASTCCQFHHSEIR*GKDSSRIRIQTEIP
Trigger: GGGAATCTCAGTCTGAATTCTGATCCTAGAACTGTCCTTCCCCAACCTTATCTCTGAATGGTGGAACTGACAGCAAGTGGATGCCTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp GTTCTCATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGTGGCATTGGGAGACATaGCATAGACGTTGTTCTCAC +
Preference number: 2 (lower is better)
Translates to: VLIVHDLLQMVAATEVVKWHWET*HRRCSH
Trigger: GTGAGAACAACGTCTATGTCATGTCTCCCAATGCCA...CTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAATGAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp AGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGAAACACCAACTCTGGCTGTaGAGGGGACATCATCCTCTC +
Preference number: 2 (lower is better)
Translates to: RDRPERDDKDITCMCIKKHQLWL*RGHHPL
Trigger: GAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGTG...TTTCTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp AAGACCTTCTCCAGCTCAGCAATATTAAGCTGCCGTAAGGACCAGATTGAAGAGGCCAGTCAGGAACTCTaGGGCAGAAGGGAGGTTGTT +
Preference number: 2 (lower is better)
Translates to: KTFSSSAILSCRKDQIEEASQEL*GRREVV
Trigger: AACAACCTCCCTTCTGCCGCAGAGTTCCTGACTGGC...CTCTTCAATCTGGTCCTTACGGCAGCTTAATATTGCTGAGCTGGAGAAGGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp AACAGGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGAGCATTGGCCCTCAGTaGAAATACCACGTTAAAAAG +
Preference number: 2 (lower is better)
Translates to: NRQGKLGQDRWQVMGRELSIGPQ*KYHVKK
Trigger: CTTTTTAACGTGGTATTTGCACTGAGGGCCAATGCT...CAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTCACAAAGCCCAACCATaGCTGCCCCATAGCTGCTTC +
Preference number: 2 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGHKAQP*LPHSCF
Trigger: GAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTG...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp GTTCTCATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGTGTAATCATAGCACTTaGAGGACAGAGGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: VLIVHDLLQMVAATEVVKCNHST*RTEAGG
Trigger: TCCTCCTGCCTCTGTCCTCCAAGTGCTATGATTACA...CTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAATGAGAAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp AGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGAAAGAAGAGGGAGGCTGGTaGGTAGGAGAGAGCAATGGT +
Preference number: 2 (lower is better)
Translates to: RDRPERDDKDITCMCIKKEEGGW*VGESNG
Trigger: ACCATTGCTCTCTCCTACCCACCAGCCTCCCTCTTC...TTTCTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR CAA 90 bp AGTTCTAGGATCAGAATTCAGACTGAGATTCCCAAGGCCTCATGTTaGTTCTCTACAACACCCAACACACCCTCTGTGGCCCACCCTATC +
Preference number: 2 (lower is better)
Translates to: SSRIRIQTEIPKASC*FSTTPNTPSVAHPI
Trigger: GATAGGGTGGGCCACAGAGGGTGTGTTGGGTGTTGTAGAGAACAAACATGAGGCCTTGGGAATCTCAGTCTGAATTCTGATCCTAGAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR TCA 90 bp TTATCCGGGTCAGGAAACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAACCGGCCGGAAAGGGATaGCAAGGACATAACCTGTAT +
Preference number: 2 (lower is better)
Translates to: LSGSGNWVTQYVWQQRGKPAGKG*QGHNLY
Trigger: ATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGG...TTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGTTTCCTGACCCGGATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp CTGTATGTGTATAAAGAAAGGACTTGGACTCTGAAGACACATCCTGGGGGCTGGTGCTGGAATGGGGACTaGGGACCTTCATTTGCATCA +
Preference number: 2 (lower is better)
Translates to: LYVYKERTWTLKTHPGGWCWNGD*GPSFAS
Trigger: TGATGCAAATGAAGGTCCTCAGTCCCCATTCCAGCA...CCAGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTTCTTTATACACATACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTATTTGTCAAAGAGCATaGGTAGCTGGGAGCGCCGAG +
Preference number: 2 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGICQRA*VAGSAE
Trigger: CTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAAT...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR GCA 90 bp ATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTAGCATTGGCCCTCAGTaGAAATACCACGTTAAAAAG +
Preference number: 2 (lower is better)
Translates to: IVHDLLQMVAATEVVKEPSIGPQ*KYHVKK
Trigger: CTTTTTAACGTGGTATTTGCACTGAGGGCCAATGCT...AGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp AGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGAAACCATGGCATCAGAGATaGAAAGAGGCAAACCCGCAG +
Preference number: 2 (lower is better)
Translates to: RDRPERDDKDITCMCIKKPWHQR*KEANPQ
Trigger: CTGCGGGTTTGCCTCTTTCCATCTCTGATGCCATGG...TTTCTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR TCA 90 bp TGTAACTCTAGCTCCAAGGCATGCTTTCTTCTGACCTCTGAGGGCACACATACACTTTCTTCTGACCTCTaGGGGCACACATACACACAA +
Preference number: 2 (lower is better)
Translates to: CNSSSKACFLLTSEGTHTLSSDL*GHTYTQ
Trigger: TTGTGTGTATGTGTGCCCTCAGAGGTCAGAAGAAAG...TGTATGTGTGCCCTCAGAGGTCAGAAGAAAGCATGCCTTGGAGCTAGAGTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp CAGACACACACTGGCATTGGGAGACATGACATAGACGTTGTTCTCACACAGTGGAGGAACAGAATGAGCTaGACAGGTGTGTTTAGACAC +
Preference number: 2 (lower is better)
Translates to: QTHTGIGRHDIDVVLTQWRNRMS*TGVFRH
Trigger: GTGTCTAAACACACCTGTTCAGCTCATTCTGTTCCT...CCACTGTGTGAGAACAACGTCTATGTCATGTCTCCCAATGCCAGTGTGTGTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR TCA 90 bp ACAGAACCAGATCTAGAGAACCTGGGTTCCAATCCTACTGGTGAAAGGTTTCTATGTCATAAGCTTCTTTaGGGTCCCGAGCCAGCTTGC +
Preference number: 2 (lower is better)
Translates to: TEPDLENLGSNPTGERFLCHKLL*GPEPAC
Trigger: GCAAGCTGGCTCGGGACCTCAAAGAAGCTTATGACA...TAGAAACCTTTCACCAGTAGGATTGGAACCCAGGTTCTCTAGATCTGGTTCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR GCA 90 bp CTGTATGTGTATAAAGAAAGGACTTGGACTCTGAAGACACATCCTGGGGGCTGGCTGAGGACCTTCATTTaGATCAGCCATAGCAGACAC +
Preference number: 2 (lower is better)
Translates to: LYVYKERTWTLKTHPGGWLRTFI*ISHSRH
Trigger: GTGTCTGCTATGGCTGATGCAAATGAAGGTCCTCAG...CCAGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTTCTTTATACACATACAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CCA 90 bp TTATCCGGGTCAGGAAACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAACGGAGCTTCCCGCTTTaGAGATGGATCTGTTTTGGA +
Preference number: 2 (lower is better)
Translates to: LSGSGNWVTQYVWQQRGKRSFPL*RWICFG
Trigger: TCCAAAACAGATCCATCTCCAAAGCGGGAAGCTCCG...TTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGTTTCCTGACCCGGATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CCA 90 bp CCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTGTATACACCTGGAGAGATGGCTAGGTaGTTAAGAGCACTTCCTGCT +
Preference number: 2 (lower is better)
Translates to: PVCMATERKNINVQVYTPGEMAR*LRALPA
Trigger: AGCAGGAAGTGCTCTTAACCACCTAGCCATCTCTCC...AGGTGTATACACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR CCA 72 bp GGGCGCCGCGTCGCGGAGTCTGAGCCCACGGCGAGCTaGCACAGTGGGTCGGGCTGCAGAGACGGTCACGTC +
Preference number: 3 (lower is better)
Translates to: GRRVAESEPTAS*HSGSGCRDGHV
Trigger: GACGTGACCGTCTCTGCAGCCCGACCCACTGTGCCAGCTCGCCGTGGGCTCAGACTCCGCGACGCGGCGCCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR GCA 72 bp TCTGAGCCCACGGCGAGCTGGCACAGTGGGTCGGGCTaGAGAGACGGTCACGTCAGCATCCATTCCCGGCAG +
Preference number: 3 (lower is better)
Translates to: SEPTASWHSGSG*RDGHVSIHSRQ
Trigger: CTGCCGGGAATGGATGCTGACGTGACCGTCTCTGCAGCCCGACCCACTGTGCCAGCTCGCCGTGGGCTCAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR CAA 90 bp CCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTGCGGCAGCCGTAAGGACCAGATaGAAGAGGGAGGCTGGTGGG +
Preference number: 3 (lower is better)
Translates to: PTGLGLPIFLRPVRNSAAAVRTR*KREAGG
Trigger: CCCACCAGCCTCCCTCTTCAATCTGGTCCTTACGGC...TGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp AGCTGGCACAGTGGGTCGGGCTGCAGAGACGGTCACGTCAGCATCCATTCCCGGACAGCAGACGTGGTCTaGATCACCCGCACCAGAGCC +
Preference number: 3 (lower is better)
Translates to: SWHSGSGCRDGHVSIHSRTADVV*ITRTRA
Trigger: GGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGT...CCGGGAATGGATGCTGACGTGACCGTCTCTGCAGCCCGACCCACTGTGCCAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR-3UTR CAA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACACAGCAGACGTGGTCTaGATCACCCGCACCAGAGCC +
Preference number: 3 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNTADVV*ITRTRA
Trigger: GGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGT...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp TGCAGGTTCTTCACAGCAGACGTGGTCTTGATCACCCGCACCAGAGCCGGGGAGAGGTCCCGAGCCAGCTaGCACTTGGGTAGGATGTGC +
Preference number: 3 (lower is better)
Translates to: CRFFTADVVLITRTRAGERSRAS*HLGRMC
Trigger: GCACATCCTACCCAAGTGCAAGCTGGCTCGGGACCT...CTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp GCCTCTCGAGTGAGGTACTGGCAGCGGCGCTCCTCATaGTGCAGGACAGTAGCAATTCGGCGGGACAAGTTG +
Preference number: 3 (lower is better)
Translates to: ASRVRYWQRRSS*CRTVAIRRDKL
Trigger: CAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CCA 72 bp CACAGGCATGCTGCCCGGGCTCATGTGAGCAGTGCCTaGAAGACGGCAATAACAGGGTCCTCATGGGTGGTC +
Preference number: 3 (lower is better)
Translates to: HRHAARAHVSSA*KTAITGSSWVV
Trigger: GACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp ACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGACCGACCGGGCTGCGGCAGAAGGGAGGTaGTTTCCATCCACACACAGG +
Preference number: 3 (lower is better)
Translates to: TKPNHGCPIAASDQTDRAAAEGR*FPSTHR
Trigger: CCTGTGTGTGGATGGAAACAACCTCCCTTCTGCCGC...AGCCCGGTCGGTCTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp GAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACGCCGTAAGGACCAGATaGAAGAGGGAGGCTGGTGGG +
Preference number: 3 (lower is better)
Translates to: ENLARTDGRSWDGNCRENAVRTR*KREAGG
Trigger: CCCACCAGCCTCCCTCTTCAATCTGGTCCTTACGGC...GTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CTGCAGATTCCTTCCACCCCCGCGCTACATGCCTTCTGCGCAGACGCAGGTTCCAGTGCTAGGATCAGCTaGGCCTCTCGAGTGAGGTAC +
Preference number: 3 (lower is better)
Translates to: LQIPSTPALHAFCADAGSSARIS*ASRVRY
Trigger: GTACCTCACTCGAGAGGCCAAGCTGATCCTAGCACT...GGAACCTGCGTCTGCGCAGAAGGCATGTAGCGCGGGGGTGGAAGGAATCTGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR TCA 72 bp CATCCTGAAGTGCTAGGATCAGCTTGGCCTCTCGAGTaGGGTACTGGCAGCGGCGCTCCTCATGCTGCAGGA +
Preference number: 3 (lower is better)
Translates to: HPEVLGSAWPLE*GTGSGAPHAAG
Trigger: TCCTGCAGCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGAGGCCAAGCTGATCCTAGCACTTCAGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 72 bp CTAGCTGCTGCAGGTTCTTCACAGCAGACGTGGTCTTaGTCACCCGCACCAGAGCCGGGGAGCAGTCAATGG +
Preference number: 3 (lower is better)
Translates to: LAAAGSSQQTWS*SPAPEPGSSQW
Trigger: CCATTGACTGCTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCAGCAGCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp CCTGGCAAACATGCGGAGGTCCTCAGGGTTTTGGGCTaGAGGCACATTGAGGATAGCAGCCCGCTCATGCTC +
Preference number: 3 (lower is better)
Translates to: PGKHAEVLRVLG*RHIEDSSPLML
Trigger: GAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp CACACACAGGCATGCTGCCCGGGCTCATGTGAGCAGTaGCTGGAAGACGGCAATAACAGGGTCCTCATGGGT +
Preference number: 3 (lower is better)
Translates to: HTQACCPGSCEQ*LEDGNNRVLMG
Trigger: ACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTGTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 72 bp AGAAGGGAGGTTGTTTCCATCCACACACAGGCATGCTaGCCGGGCTCATGTGAGCAGTGCCTGGAAGACGGC +
Preference number: 3 (lower is better)
Translates to: RREVVSIHTQAC*PGSCEQCLEDG
Trigger: GCCGTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTGTGTGGATGGAAACAACCTCCCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 72 bp GGCAGAAGGGAGGTTGTTTCCATCCACACACAGGCATaGTGCCCGGGCTCATGTGAGCAGTGCCTGGAAGAC +
Preference number: 3 (lower is better)
Translates to: GRREVVSIHTQA*CPGSCEQCLED
Trigger: GTCTTCCAGGCACTGCTCACATGAGCCCGGGCAGCATGCCTGTGTGTGGATGGAAACAACCTCCCTTCTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR CCA 72 bp CCTCTGTGGCCCACCCTATCCCAAGGCAGAGCCTTCTaGTCCGGGACCCTTGAAAATTCAGTCCGGGTTCAG +
Preference number: 3 (lower is better)
Translates to: PLWPTLSQGRAF*SGTLENSVRVQ
Trigger: CTGAACCCGGACTGAATTTTCAAGGGTCCCGGACCAGAAGGCTCTGCCTTGGGATAGGGTGGGCCACAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 72 bp AGGAGCCTGGCAAACATGCGGAGGTCCTCAGGGTTTTaGGCTGCAGGCACATTGAGGATAGCAGCCCGCTCA +
Preference number: 3 (lower is better)
Translates to: RSLANMRRSSGF*AAGTLRIAARS
Trigger: TGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGCGGCAGAAGGGAGGTaGTTTCCATCCACACACAGG +
Preference number: 3 (lower is better)
Translates to: RAHVSSAWKTAITGSSWVAAEGR*FPSTHR
Trigger: CCTGTGTGTGGATGGAAACAACCTCCCTTCTGCCGC...CACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CATGCAGGGGAGTGGACACAGAAGCCCTTGCGCTTCTATGTCCAGGGCAGCCCACGAGCCAGCTTGCACTaGGGTAGGATGTGCTGGAAT +
Preference number: 3 (lower is better)
Translates to: HAGEWTQKPLRFYVQGSPRASLH*GRMCWN
Trigger: ATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTCG...TGGGCTGCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp GGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTACAGACACACACTGGCATAGGTCCCGAGCCAGCTaGCACTTGGGTAGGATGTGC +
Preference number: 3 (lower is better)
Translates to: GTAGRTVQLAGSTDTHWHRSRAS*HLGRMC
Trigger: GCACATCCTACCCAAGTGCAAGCTGGCTCGGGACCT...ATGCCAGTGTGTGTCTGTACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp ATAGCAGCCCGCTCATGCTCTGAGAGGCTAGCCAGCAGGTTCTCTGTCATCCTCACAGCAGACGTGGTCTaGATCACCCGCACCAGAGCC +
Preference number: 3 (lower is better)
Translates to: IAARSCSERLASRFSVILTADVV*ITRTRA
Trigger: GGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGT...GAGGATGACAGAGAACCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp TCGTCACTGAGAAGTAGCAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTGCGGCAGAAGGGAGGTaGTTTCCATCCACACACAGG +
Preference number: 3 (lower is better)
Translates to: SSLRSSKAWYGRMAFRLRAAEGR*FPSTHR
Trigger: CCTGTGTGTGGATGGAAACAACCTCCCTTCTGCCGC...ACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAGTGACGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGAGTGCTAGGATCAGCTaGGCCTCTCGAGTGAGGTAC +
Preference number: 3 (lower is better)
Translates to: RAHVSSAWKTAITGSSWVSARIS*ASRVRY
Trigger: GTACCTCACTCGAGAGGCCAAGCTGATCCTAGCACT...CACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGCGAGCCAGCTTGCACTaGGGTAGGATGTGCTGGAAT +
Preference number: 3 (lower is better)
Translates to: RAHVSSAWKTAITGSSWVRASLH*GRMCWN
Trigger: ATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTCG...CACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTGGCAAAGAGGTCCTCAGGGTTTaGGGCTGCAGGCACATTGAG +
Preference number: 3 (lower is better)
Translates to: HDLLQMVAATEVVKEPGKEVLRV*GCRHIE
Trigger: CTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTC...TTTGCCAGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp TCTCGAGTGAGGTACTGGCAGCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGGCGGGACAAGTTGTGT +
Preference number: 3 (lower is better)
Translates to: SRVRYWQRRSSC*RTVAIRRDKLC
Trigger: ACACAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp TGCAGCAAGGCCAGATCGGCATCCTGGGCTAGCTGCTaGAGGTTCTTCACAGCAGACGTGGTCTTGATCACC +
Preference number: 3 (lower is better)
Translates to: CSKARSASWASC*RFFTADVVLIT
Trigger: GGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGCCTTGCTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp GATGATGACAGCCTTGCCCCAGTATACCAGGTGAGCTaGCAACTGGAAGACCTGCAGCAAGGCCAGATCGGC +
Preference number: 3 (lower is better)
Translates to: DDDSLAPVYQVS*QLEDLQQGQIG
Trigger: GCCGATCTGGCCTTGCTGCAGGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGGCAAGGCTGTCATCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp CAGGGTAGGGGCCTCCAGATGGGGCAGGCATCCACTTaGTGTCAGTTCCACCATTCAGAGATAAGGTTGGGG +
Preference number: 3 (lower is better)
Translates to: QGRGLQMGQAST*CQFHHSEIRLG
Trigger: CCCCAACCTTATCTCTGAATGGTGGAACTGACAGCAAGTGGATGCCTGCCCCATCTGGAGGCCCCTACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR GCA 72 bp GTATTGGTCATGCAGGGGAGTGGACACAGAAGCCCTTaGGCTTCTATGTCCAGGGCAGCCCATGGGTCAGTG +
Preference number: 3 (lower is better)
Translates to: VLVMQGSGHRSP*ASMSRAAHGSV
Trigger: CACTGACCCATGGGCTGCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATGACCAATAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR CCA 72 bp GGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATaGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGC +
Preference number: 3 (lower is better)
Translates to: GKENLARTDGRS*DGNCRENCSAS
Trigger: GCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CCA 72 bp TCCAACCTGGCAAACATGCGGAGGTCCTCAGGGTTTTaGGCTGCAGGCACATTGAGGATAGCAGCCCGCTCA +
Preference number: 3 (lower is better)
Translates to: SNLANMRRSSGF*AAGTLRIAARS
Trigger: TGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 72 bp GCAGCAGCCCGTATAGGTATTGGTCATGCAGGGGAGTaGACACAGAAGCCCTTGCGCTTCTATGTCCAGGGC +
Preference number: 3 (lower is better)
Translates to: AAARIGIGHAGE*TQKPLRFYVQG
Trigger: GCCCTGGACATAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATGACCAATACCTATACGGGCTGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp TGCCGGGAGAACTGTTCAGCTAGCGGGGAGTACAGACACACACTGGCATTGGGAAGTGCTAGGATCAGCTaGGCCTCTCGAGTGAGGTAC +
Preference number: 3 (lower is better)
Translates to: CRENCSASGEYRHTLALGSARIS*ASRVRY
Trigger: GTACCTCACTCGAGAGGCCAAGCTGATCCTAGCACT...TCCCAATGCCAGTGTGTGTCTGTACTCCCCGCTAGCTGAACAGTTCTCCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp AAGAAACAGGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAAGGTCCCGAGCCAGCTaGCACTTGGGTAGGATGTGC +
Preference number: 3 (lower is better)
Translates to: KKQARKTWPGQMAGHGTGRSRAS*HLGRMC
Trigger: GCACATCCTACCCAAGTGCAAGCTGGCTCGGGACCT...TCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGTTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 72 bp GTGAGGCCATTAGGCAAACATAGGTATGCAGCTGGATaGGGAGCCGGCGCTGCAGCATCCACACCACCATCT +
Preference number: 3 (lower is better)
Translates to: VRPLGKHRYAAG*GAGAAASTPPS
Trigger: AGATGGTGGTGTGGATGCTGCAGCGCCGGCTCCTCATCCAGCTGCATACCTATGTTTGCCTAATGGCCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 72 bp ACCAGATCTAGAGAACCTGGGTTCCAATCCTACTGGTaGAAGGTTTCTACACTCGCCCCGCCCTGTCCCGCC +
Preference number: 3 (lower is better)
Translates to: TRSREPGFQSYW*KVSTLAPPCPA
Trigger: GGCGGGACAGGGCGGGGCGAGTGTAGAAACCTTTCACCAGTAGGATTGGAACCCAGGTTCTCTAGATCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR GCA 72 bp GGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTaGGGCAGAAGGGAGGTTGTTTCCATCCACACACAG +
Preference number: 3 (lower is better)
Translates to: GAAYLPKASQEL*GRREVVSIHTQ
Trigger: CTGTGTGTGGATGGAAACAACCTCCCTTCTGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 72 bp TGTGGTGGTGGCAGCAGCCCGTATAGGTATTGGTCATaGAGGGGAGTGGACACAGAAGCCCTTGCGCTTCTA +
Preference number: 3 (lower is better)
Translates to: CGGGSSPYRYWS*RGVDTEALALL
Trigger: TAGAAGCGCAAGGGCTTCTGTGTCCACTCCCCTGCATGACCAATACCTATACGGGCTGCTGCCACCACCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR CCA 72 bp GGACATCATCCTCTCGCAGTCGGGGCTCCTCTTCGCTaGGTGAGGCCATTAGGCAAACATAGGTATGCAGCT +
Preference number: 3 (lower is better)
Translates to: GHHPLAVGAPLR*VRPLGKHRYAA
Trigger: AGCTGCATACCTATGTTTGCCTAATGGCCTCACCCAGCGAAGAGGAGCCCCGACTGCGAGAGGATGATGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CCA 72 bp GACCTCACTTGGATCCTAGCCCCATGGCATCAGAGATaGAAAGAGGCAAACCCGCAGTCCTGCAGGGAAGGT +
Preference number: 3 (lower is better)
Translates to: DLTWILAPWHQR*KEANPQSCREG
Trigger: ACCTTCCCTGCAGGACTGCGGGTTTGCCTCTTTCCATCTCTGATGCCATGGGGCTAGGATCCAAGTGAGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CCA 72 bp AACTCTGTAGTGGTCCCTCCAAGCTGTGCCAGGCCCTaGCCATTGATAAGAGCTTTGACCAGCGAGACCTGG +
Preference number: 3 (lower is better)
Translates to: NSVVVPPSCARP*PLIRALTSETW
Trigger: CCAGGTCTCGCTGGTCAAAGCTCTTATCAATGGCCAGGGCCTGGCACAGCTTGGAGGGACCACTACAGAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp ATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTCAGGAGGAATCAGACTaGAAGCTGCATAGTGGATCT +
Preference number: 3 (lower is better)
Translates to: MAGHGTGTAGRTVQLAGSQEESD*KLHSGS
Trigger: AGATCCACTATGCAGCTTCAAGTCTGATTCCTCCTG...ACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp GTTCTCATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGACAGCAGACGTGGTCTaGATCACCCGCACCAGAGCC +
Preference number: 3 (lower is better)
Translates to: VLIVHDLLQMVAATEVVKTADVV*ITRTRA
Trigger: GGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGT...CTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAATGAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTGGCAAAAGCTCAGCACTTGAGTaGTCCATACTGGGGCTGGTA +
Preference number: 3 (lower is better)
Translates to: HDLLQMVAATEVVKEPGKSSALE*SILGLV
Trigger: TACCAGCCCCAGTATGGACAACTCAAGTGCTGAGCT...TTTGCCAGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 72 bp TGCAGGCACATTGAGGATAGCAGCCCGCTCATGCTCTaGGAGGCTAGCCAGCAGGTTCTCTGTCATCCTCTT +
Preference number: 3 (lower is better)
Translates to: CRHIEDSSPLML*EASQQVLCHPL
Trigger: AAGAGGATGACAGAGAACCTGCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp GGAGATGGATCTGTTTTGGAGACCTGCCCCAGAGCATaGTGCAGCAGTGTTGGGTGCCCAACAAACCGTACA +
Preference number: 3 (lower is better)
Translates to: GDGSVLETCPRA*CSSVGCPTNRT
Trigger: TGTACGGTTTGTTGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGTCTCCAAAACAGATCCATCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR GCA 72 bp TCTGTAAAGGGATCCAATGTCCTCTTCTGGTGCATCTaGAGCAAGGCCAGATCGGCATCCTGGGCTAGCTGC +
Preference number: 3 (lower is better)
Translates to: SVKGSNVLFWCI*SKARSASWASC
Trigger: GCAGCTAGCCCAGGATGCCGATCTGGCCTTGCTGCAGATGCACCAGAAGAGGACATTGGATCCCTTTACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR GCA 72 bp GATGATGACAGCCTTGCCCCAGTATACCAGGTGAGCTaGCAACTGGAAGACCTCACTTGGATCCTAGCCCCA +
Preference number: 3 (lower is better)
Translates to: DDDSLAPVYQVS*QLEDLTWILAP
Trigger: TGGGGCTAGGATCCAAGTGAGGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGGCAAGGCTGTCATCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CCA 72 bp CATGTTTGTTCTCTACAACACCCAACACACCCTCTGTaGCCCACCCTATCCCAAGGCAGAGCCTTCTGGTCC +
Preference number: 3 (lower is better)
Translates to: HVCSLQHPTHPL*PTLSQGRAFWS
Trigger: GGACCAGAAGGCTCTGCCTTGGGATAGGGTGGGCCACAGAGGGTGTGTTGGGTGTTGTAGAGAACAAACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 72 bp CTATCCCAAGACTTCCCTTCCCATCATCCCTTCCTTTaGGTCAGTCACTTCCCACTCGAGGAGTACGGGTGC +
Preference number: 3 (lower is better)
Translates to: LSQDFPSHHPFL*VSHFPLEEYGC
Trigger: GCACCCGTACTCCTCGAGTGGGAAGTGACTGACCCAAAGGAAGGGATGATGGGAAGGGAAGTCTTGGGATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 72 bp TGCCAACTGGAAGACCTCACTTGGATCCTAGCCCCATaGCATCAGAGATGGAAAGAGGCAAACCCGCAGTCC +
Preference number: 3 (lower is better)
Translates to: CQLEDLTWILAP*HQRWKEANPQS
Trigger: GGACTGCGGGTTTGCCTCTTTCCATCTCTGATGCCATGGGGCTAGGATCCAAGTGAGGTCTTCCAGTTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CCA 72 bp AGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATaGGTGGTCACCACCAGCACACTGCGGAATTTGTCA +
Preference number: 3 (lower is better)
Translates to: SSAWKTAITGSS*VVTTSTLRNLS
Trigger: TGACAAATTCCGCAGTGTGCTGGTGGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CCAGAGCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACCAGGAGGAATCAGACTaGAAGCTGCATAGTGGATCT +
Preference number: 3 (lower is better)
Translates to: PEPGSSQWEAHSAETSRHQEESD*KLHSGS
Trigger: AGATCCACTATGCAGCTTCAAGTCTGATTCCTCCTG...GTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGCTCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
ENSMUST00000149526.2
3UTR TCA 72 bp CCACACCAGATGTGCACAGGCTGTCATAAGCTTCTTTaGGGTCCCGAGCCAGCTTGCACTTGGGTAGGATGT +
Preference number: 3 (lower is better)
Translates to: PHQMCTGCHKLL*GPEPACTWVGC
Trigger: ACATCCTACCCAAGTGCAAGCTGGCTCGGGACCTCAAAGAAGCTTATGACAGCCTGTGCACATCTGGTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CCA 72 bp TCTCTGTCATCCTCTTGTTCAGTGGTGAGTCCCCACTaGGGAGCAGCTCAGCACTTGAGTTGTCCATACTGG +
Preference number: 3 (lower is better)
Translates to: SLSSSCSVVSPH*GAAQHLSCPYW
Trigger: CCAGTATGGACAACTCAAGTGCTGAGCTGCTCCCCAGTGGGGACTCACCACTGAACAAGAGGATGACAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp CGGGCTCATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACT +
Preference number: 3 (lower is better)
Translates to: RAHVSSAWKTAITGSSWVIRRDK*CRQFIT
Trigger: AGTGATAAACTGTCTACACAACTTGTCCCGCCGAAT...CACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATGAGCCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 72 bp CCAGGGCAGCTCCACAAGGGACCGGCCGGAAAGGGATaGCAAGGACATAACCTGTATGTGTATAAAGAAAGG +
Preference number: 3 (lower is better)
Translates to: PGQLHKGPAGKG*QGHNLYVYKER
Trigger: CCTTTCTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGTGGAGCTGCCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 72 bp CCTTCATTTGCATCAGCCATAGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTGGCCTCTCGAGTGAGG +
Preference number: 3 (lower is better)
Translates to: PSFASAIADTSS*SARISLASRVR
Trigger: CCTCACTCGAGAGGCCAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGCTATGGCTGATGCAAATGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 72 bp GGCAGACAGAAACTCACTTCCAGCCAGCTGTTAATGTaGAGCCGTACCACACCAGATGTGCACAGGCTGTCA +
Preference number: 3 (lower is better)
Translates to: GRQKLTSSQLLM*SRTTPDVHRLS
Trigger: TGACAGCCTGTGCACATCTGGTGTGGTACGGCTTCACATTAACAGCTGGCTGGAAGTGAGTTTCTGTCTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR GCA 72 bp TCCTGGAAGACCTTCTCCAGCTCAGCAATATTAAGCTaGCGTAAGGACCAGATTGAAGAGGGAGGCTGGTGG +
Preference number: 3 (lower is better)
Translates to: SWKTFSSSAILS*RKDQIEEGGWW
Trigger: CCACCAGCCTCCCTCTTCAATCTGGTCCTTACGGCAGCTTAATATTGCTGAGCTGGAGAAGGTCTTCCAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR GCA 72 bp GGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTaGTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAA +
Preference number: 3 (lower is better)
Translates to: GWRDGSVVKSTD*SSRGPEFNSQQ
Trigger: TTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR CCA 72 bp AGCAGAGACTTCTCGTCACTGAGAAGTAGCAAGGCATaGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATA +
Preference number: 3 (lower is better)
Translates to: SRDFSSLRSSKA*YGRMAFRLRSI
Trigger: TATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAGTGACGAGAAGTCTCTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
ENSMUST00000149526.2
3UTR-3UTR CAA 90 bp AGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTGTGAGGAGTGCTAGGATCAGCTaGGCCTCTCGAGTGAGGTAC +
Preference number: 3 (lower is better)
Translates to: RQEDQEFKVILNYKASVRSARIS*ASRVRY
Trigger: GTACCTCACTCGAGAGGCCAAGCTGATCCTAGCACT...CCTCACACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp GCTGTTAATGTGAAGCCGTACCACACCAGATGTGCACAGGCTGTCATAAGCTTCCGAGCCAGCTTGCACTaGGGTAGGATGTGCTGGAAT +
Preference number: 3 (lower is better)
Translates to: AVNVKPYHTRCAQAVISFRASLH*GRMCWN
Trigger: ATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTCG...GAAGCTTATGACAGCCTGTGCACATCTGGTGTGGTACGGCTTCACATTAACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp AACAGGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGCAGGAGGAATCAGACTaGAAGCTGCATAGTGGATCT +
Preference number: 3 (lower is better)
Translates to: NRQGKLGQDRWQVMGRELQEESD*KLHSGS
Trigger: AGATCCACTATGCAGCTTCAAGTCTGATTCCTCCTG...CAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 72 bp CAGGCTCCGTTCAATAGCCTCAGGAGGAATCAGACTTaGAGCTGCATAGTGGATCTTGTGGGGCAGACAGAA +
Preference number: 3 (lower is better)
Translates to: QAPFNSLRRNQT*SCIVDLVGQTE
Trigger: TTCTGTCTGCCCCACAAGATCCACTATGCAGCTTCAAGTCTGATTCCTCCTGAGGCTATTGAACGGAGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
ENSMUST00000149526.2
3UTR TCA 72 bp CCCGCAGTCCTGCAGGGAAGGTTTGCTCTGAACATCTaGTTGGACTTAGTTGTCCTCCAAAACAAGGCTGCA +
Preference number: 3 (lower is better)
Translates to: PAVLQGRFALNI*LDLVVLQNKAA
Trigger: TGCAGCCTTGTTTTGGAGGACAACTAAGTCCAATCAGATGTTCAGAGCAAACCTTCCCTGCAGGACTGCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR TCA 72 bp TCACCACCAGCACACTGCGGAATTTGTCAAAGAGCATaGGTAGCTGGGAGCGCCGAGTGTTCTCATTGTACA +
Preference number: 3 (lower is better)
Translates to: SPPAHCGICQRA*VAGSAECSHCT
Trigger: TGTACAATGAGAACACTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAATTCCGCAGTGTGCTGGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR TCA 72 bp TACCTCTACAACACTGGGTGTGCATGGCAGGAGGCTTaGGGTTTACTGCCAAGCTTTCTGTCTTTCCCACAG +
Preference number: 3 (lower is better)
Translates to: YLYNTGCAWQEA*GLLPSFLSFPQ
Trigger: CTGTGGGAAAGACAGAAAGCTTGGCAGTAAACCTCAAGCCTCCTGCCATGCACACCCAGTGTTGTAGAGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR GCA 72 bp GGAAAGAGGCAAACCCGCAGTCCTGCAGGGAAGGTTTaGTCTGAACATCTGATTGGACTTAGTTGTCCTCCA +
Preference number: 3 (lower is better)
Translates to: GKRQTRSPAGKV*SEHLIGLSCPP
Trigger: TGGAGGACAACTAAGTCCAATCAGATGTTCAGAGCAAACCTTCCCTGCAGGACTGCGGGTTTGCCTCTTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR GCA 72 bp TGCAGGAAGACAGCAATACCTCTACAACACTGGGTGTaGATGGCAGGAGGCTTGAGGTTTACTGCCAAGCTT +
Preference number: 3 (lower is better)
Translates to: CRKTAIPLQHWV*MAGGLRFTAKL
Trigger: AAGCTTGGCAGTAAACCTCAAGCCTCCTGCCATGCACACCCAGTGTTGTAGAGGTATTGCTGTCTTCCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR CCA 72 bp GTGACATTGATGGCACGCGTGTGTAATCATAGCACTTaGAGGACAGAGGCAGGAGGATCAGGAGTTCAAGGT +
Preference number: 3 (lower is better)
Translates to: VTLMARVCNHST*RTEAGGSGVQG
Trigger: ACCTTGAACTCCTGATCCTCCTGCCTCTGTCCTCCAAGTGCTATGATTACACACGCGTGCCATCAATGTCAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp GCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAACACATGATAGCTCAAAACACAGGCAAGGAAAACTaGGCCAGGACAGATGGCAGG +
Preference number: 3 (lower is better)
Translates to: ALPEVLSSIPSKHMIAQNTGKEN*ARTDGR
Trigger: CCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGT...GTTTTGAGCTATCATGTGTTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
3UTR-3UTR CAA 90 bp ATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACT +
Preference number: 3 (lower is better)
Translates to: IVHDLLQMVAATEVVKEPIRRDK*CRQFIT
Trigger: AGTGATAAACTGTCTACACAACTTGTCCCGCCGAAT...AGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR CCA 72 bp AGCACACTGCGGAATTTGTCAAAGAGCATGAGTAGCTaGGAGCGCCGAGTGTTCTCATTGTACATGATCTCC +
Preference number: 3 (lower is better)
Translates to: STLRNLSKSMSS*ERRVFSLYMIS
Trigger: GGAGATCATGTACAATGAGAACACTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAATTCCGCAGTGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTAGCTCAGCACTTGAGTaGTCCATACTGGGGCTGGTA +
Preference number: 3 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGSSALE*SILGLV
Trigger: TACCAGCCCCAGTATGGACAACTCAAGTGCTGAGCT...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 72 bp AACGTGCAGGTGTATACACCTAGGAACAGAATGAGCTaGACAGGTGTGTTTAGACACTTTCCAGGGCAGCTC +
Preference number: 3 (lower is better)
Translates to: NVQVYTPRNRMS*TGVFRHFPGQL
Trigger: GAGCTGCCCTGGAAAGTGTCTAAACACACCTGTTCAGCTCATTCTGTTCCTAGGTGTATACACCTGCACGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR CCA 72 bp GGGTGCACAACCTCATTTGAAAGGTTACAGATAGGGTaGGTGGCAAGCCTAGGTCCCAGAGAAATAATCACT +
Preference number: 3 (lower is better)
Translates to: GCTTSFERLQIG*VASLGPREIIT
Trigger: AGTGATTATTTCTCTGGGACCTAGGCTTGCCACCCACCCTATCTGTAACCTTTCAAATGAGGTTGTGCACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR TCA 72 bp ATAACCTGTATGTGTATAAAGAAAGGACTTGGACTCTaGAGACACATCCTGGGGGCTGGAGAGATGGCTAGG +
Preference number: 3 (lower is better)
Translates to: ITCMCIKKGLGL*RHILGAGEMAR
Trigger: CCTAGCCATCTCTCCAGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTTCTTTATACACATACAGGTTAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR TCA 72 bp ACATCAACGTGCAGGTGTATACACCTAGGAACAGAATaGGCTGAACAGGTGTGTTTAGACACTTTCCAGGGC +
Preference number: 3 (lower is better)
Translates to: TSTCRCIHLGTE*AEQVCLDTFQG
Trigger: GCCCTGGAAAGTGTCTAAACACACCTGTTCAGCTCATTCTGTTCCTAGGTGTATACACCTGCACGTTGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
3UTR-3UTR CAA 90 bp TCTAGGATCAGAATTCAGACTGAGATTCCCAAGGCCTCATGTTTGTTCTCTACATTCTCTGTCATCCTCTaGTTCAGTGGTGAGTCCCCA +
Preference number: 3 (lower is better)
Translates to: SRIRIQTEIPKASCLFSTFSVIL*FSGESP
Trigger: TGGGGACTCACCACTGAACAAGAGGATGACAGAGAA...TGTAGAGAACAAACATGAGGCCTTGGGAATCTCAGTCTGAATTCTGATCCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
3UTR CCA 72 bp CAAGGACATAACCTGTATGTGTATAAAGAAAGGACTTaGACTCTGAAGACACATCCTGGGGGCTGGAGAGAT +
Preference number: 3 (lower is better)
Translates to: QGHNLYVYKERT*TLKTHPGGWRD
Trigger: ATCTCTCCAGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTTCTTTATACACATACAGGTTATGTCCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
CDS-3UTR TCA 90 bp CTACACTCGCCCCGCCCTGTCCCGCCCCTAGAGTCCTCGCTCCGCCTCTTCTGCTCTGGAAGGGGTACCTaGAGAGCAGCTTATTGCCCC +
Preference number: 4 (lower is better)
Translates to: LHSPRPVPPLESSLRLFCSGRGT*RAAYCP
Trigger: GGGGCAATAAGCTGCTCTTCAGGTACCCCTTCCAGA...GCAGAAGAGGCGGAGCGAGGACTCTAGGGGCGGGACAGGGCGGGGCGAGTGTAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
CDS-3UTR GCA 90 bp TCGCCCCGCCCTGTCCCGCCCCTAGAGTCCTCGCTCCGCCTCTTCTGCAGATTCGCTTATTGCCCCTGCTaGCCGAGCTCACCAGGATCA +
Preference number: 4 (lower is better)
Translates to: SPRPVPPLESSLRLFCRFAYCPC*PSSPGS
Trigger: TGATCCTGGTGAGCTCGGGCAGCAGGGGCAATAAGC...GAATCTGCAGAAGAGGCGGAGCGAGGACTCTAGGGGCGGGACAGGGCGGGGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
CDS-3UTR GCA 90 bp ATGGCAGGTCATGGGACGGGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTGTCTGGGACGCGGGGTaGTCCTGGCTCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: MAGHGTGTAGRTVQLAGSVWDAG*SWLLWK
Trigger: CTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGAC...ACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCCCGTCCCATGACCTGCCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp CCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTGCGGCAGCCAGATCGGCATCCTaGGCTAGCTGCTGCAGGTTC +
Preference number: 4 (lower is better)
Translates to: PTGLGLPIFLRPVRNSAAARSAS*ASCCRF
Trigger: GAACCTGCAGCAGCTAGCCCAGGATGCCGATCTGGC...TGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACACCTGCCCCAGAGCATaGTGCAGCAGTGTTGGGTGC +
Preference number: 4 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNTCPRA*CSSVGC
Trigger: GCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGT...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACCCCCAGTATACCAGGTaGGCTGCCAACTGGAAGACC +
Preference number: 4 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNPQYTR*AANWKT
Trigger: GGTCTTCCAGTTGGCAGCTCACCTGGTATACTGGGG...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACACACCACCATCTGGATaGGCTGGGTCTCCTGTGCAG +
Preference number: 4 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNTPPSG*AGSPVQ
Trigger: CTGCACAGGAGACCCAGCTCATCCAGATGGTGGTGT...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp GCTGCAGGCACATTGAGGATAGCAGCCCGCTCATGCTCTGAGAGGCTAGCCAGCGCTTATTGCCCCTGCTaGCCGAGCTCACCAGGATCA +
Preference number: 4 (lower is better)
Translates to: AAGTLRIAARSCSERLASAYCPC*PSSPGS
Trigger: TGATCCTGGTGAGCTCGGGCAGCAGGGGCAATAAGC...GCTGGCTAGCCTCTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp TGCTGTTCCCAGCCCCACACCCAATGGCTCACAACCTCTGTAACTCTAGCTCCAGACGCGGGGTGCTCCTaGCTCCTCTGGAAGGGGTAC +
Preference number: 4 (lower is better)
Translates to: CCSQPHTQWLTTSVTLAPDAGCS*LLWKGY
Trigger: GTACCCCTTCCAGAGGAGCCAGGAGCACCCCGCGTC...TGGAGCTAGAGTTACAGAGGTTGTGAGCCATTGGGTGTGGGGCTGGGAACAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
3UTR CAA 72 bp GCTAGCTGCTGCAGGTTCTTCACAGCAGACGTGGTCTaGATCACCCGCACCAGAGCCGGGGAGCAGTCAATG +
Preference number: 4 (lower is better)
Translates to: ASCCRFFTADVV*ITRTRAGEQSM
Trigger: CATTGACTGCTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGTGAAGAACCTGCAGCAGCTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 72 bp TCGTCACTGCTGGTTGGGGAGCCAAAGCTTAGAGCATaGGGTGTGCTGAGGCTGCGGCCACCAACTCTGGCT +
Preference number: 4 (lower is better)
Translates to: SSLLVGEPKLRA*GVLRLRPPTLA
Trigger: AGCCAGAGTTGGTGGCCGCAGCCTCAGCACACCCAATGCTCTAAGCTTTGGCTCCCCAACCAGCAGTGACGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 72 bp GTCCAACCTGGCAAACATGCGGAGGTCCTCAGGGTTTaGGGCTGCAGGCACATTGAGGATAGCAGCCCGCTC +
Preference number: 4 (lower is better)
Translates to: VQPGKHAEVLRV*GCRHIEDSSPL
Trigger: GAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTCCGCATGTTTGCCAGGTTGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
CDS-3UTR TCA 90 bp CTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGGCTTGGCCTCTCGAGTaGGGTACTGGCAGCGGCGCT +
Preference number: 4 (lower is better)
Translates to: LKRITKPNHGCPIAASDQAWPLE*GTGSGA
Trigger: AGCGCCGCTGCCAGTACCTCACTCGAGAGGCCAAGC...CTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp GTGCTGGAATGGGGACTGAGGACCTTCATTTGCATCAGCCATAGCAGACACCTCGTCTGGGACGCGGGGTaGTCCTGGCTCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: VLEWGLRTFICISHSRHLVWDAG*SWLLWK
Trigger: CTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGAC...GAGGTGTCTGCTATGGCTGATGCAAATGAAGGTCCTCAGTCCCCATTCCAGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp ACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGACCGACCGGGCTGCATCCTGGGCTAGCTaGTGCAGGTTCTTCACAGCA +
Preference number: 4 (lower is better)
Translates to: TKPNHGCPIAASDQTDRAASWAS*CRFFTA
Trigger: TGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGATGC...AGCCCGGTCGGTCTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp GCAAACATAGGTATGCAGCTGGATGAGGAGCCGGCGCTGCAGCATCCACACCACTGCTCCTGGCTCCTCTaGAAGGGGTACCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: ANIGMQLDEEPALQHPHHCSWLL*KGYLKS
Trigger: GCTCTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCA...GTGGTGTGGATGCTGCAGCGCCGGCTCCTCATCCAGCTGCATACCTATGTTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp CCAGAGCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACCGTGGTTTATTTGTCTaGGACGCGGGGTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: PEPGSSQWEAHSAETSRHRGLFV*DAGCSW
Trigger: CCAGGAGCACCCCGCGTCCCAGACAAATAAACCACG...GTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGCTCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp CAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCCTCAGGAGGCGTGGTTTATTTGTCTaGGACGCGGGGTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: QGMVRADGFQAPFNSLRRRGLFV*DAGCSW
Trigger: CCAGGAGCACCCCGCGTCCCAGACAAATAAACCACG...CCTCCTGAGGCTATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp TGCGGCAGCTTCGTAACTCCCTCCGAAAAAGCACTGTCGGCCGTTCCCTCAAGGCGTGGTTTATTTGTCTaGGACGCGGGGTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: CGSFVTPSEKALSAVPSRRGLFV*DAGCSW
Trigger: CCAGGAGCACCCCGCGTCCCAGACAAATAAACCACG...CCTTGAGGGAACGGCCGACAGTGCTTTTTCGGAGGGAGTTACGAAGCTGCCGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp AGCAGACGTGGTCTTGATCACCCGCACCAGAGCCGGGGAGCAGTCAATGGGAAGCTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: SRRGLDHPHQSRGAVNGKLESPS*SSACSP
Trigger: TGGCGAACATGCTGATGACCAGGACGGTGACTCCAG...CTTCCCATTGACTGCTCCCCGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp CCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTGCGGCACGGAGCTTCCCGCTTTaGAGATGGATCTGTTTTGGA +
Preference number: 4 (lower is better)
Translates to: PTGLGLPIFLRPVRNSAARSFPL*RWICFG
Trigger: TCCAAAACAGATCCATCTCCAAAGCGGGAAGCTCCG...TGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACCAGGCAAGGAAAACTTaGCCAGGACAGATGGCAGGT +
Preference number: 4 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNQARKT*PGQMAG
Trigger: ACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTG...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp GTTCTCATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGTCTGGGACGCGGGGTaGTCCTGGCTCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: VLIVHDLLQMVAATEVVKVWDAG*SWLLWK
Trigger: CTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGAC...CTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAATGAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp AGCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACTGAGCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGG +
Preference number: 4 (lower is better)
Translates to: SRGAVNGKLTQQRLLVTERRSSC*RTVAIR
Trigger: CCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG...CTCAGTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
CDS-3UTR CCA 90 bp AGCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACTGAGTGCTCCTGGCTCCTCTaGAAGGGGTACCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: SRGAVNGKLTQQRLLVTECSWLL*KGYLKS
Trigger: GCTCTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCA...CTCAGTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp GGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCCTCAGGAGGAATTGCTCCTGGCTCCTCTaGAAGGGGTACCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: GMVRADGFQAPFNSLRRNCSWLL*KGYLKS
Trigger: GCTCTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCA...ATTCCTCCTGAGGCTATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp CTGACCAGACCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACCGGAGCTTCCCGCTTTaGAGATGGATCTGTTTTGGA +
Preference number: 4 (lower is better)
Translates to: LTRPTGLGLPIFLRPVRNRSFPL*RWICFG
Trigger: TCCAAAACAGATCCATCTCCAAAGCGGGAAGCTCCG...GTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGGTCTGGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp GAGGTACTGGCAGCGGCGCTCCTCATGCTGCAGGACAGTAGCAATTCGGCGGGAGAGATGGATCTGTTTTaGAGACCTGGAGTCACCGTC +
Preference number: 4 (lower is better)
Translates to: EVLAAALLMLQDSSNSAGEMDLF*RPGVTV
Trigger: GACGGTGACTCCAGGTCTCCAAAACAGATCCATCTC...TCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCGCTGCCAGTACCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
3UTR CAA 72 bp ATGCGGAGGTCCTCAGGGTTTTGGGCTGCAGGCACATaGAGGATAGCAGCCCGCTCATGCTCTGAGAGGCTA +
Preference number: 4 (lower is better)
Translates to: MRRSSGFWAAGT*RIAARSCSERL
Trigger: TAGCCTCTCAGAGCATGAGCGGGCTGCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTCCGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR TCA 90 bp TGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGTCACCACTCTGGAAGGGGTACCTaGAGAGCAGCTTATTGCCCC +
Preference number: 4 (lower is better)
Translates to: CEQCLEDGNNRVLMGGHHSGRGT*RAAYCP
Trigger: GGGGCAATAAGCTGCTCTTCAGGTACCCCTTCCAGA...GTGGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR TCA 90 bp GGAACTGCCGGGAGAACTGTTCAGCTAGCGGGGAGTACAGACACACACTGGCATTCTGGAAGGGGTACCTaGAGAGCAGCTTATTGCCCC +
Preference number: 4 (lower is better)
Translates to: GTAGRTVQLAGSTDTHWHSGRGT*RAAYCP
Trigger: GGGGCAATAAGCTGCTCTTCAGGTACCCCTTCCAGA...ATGCCAGTGTGTGTCTGTACTCCCCGCTAGCTGAACAGTTCTCCCGGCAGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp CCCACCAACCACATGGTGGCATGTAATGCCCTCTTCTGGTGTCTGAAGACAGCAGCAGCTTATTGCCCCTaGTGCCCGAGCTCACCAGGA +
Preference number: 4 (lower is better)
Translates to: PTNHMVACNALFWCLKTAAAYCP*CPSSPG
Trigger: TCCTGGTGAGCTCGGGCAGCAGGGGCAATAAGCTGC...TGCTGTCTTCAGACACCAGAAGAGGGCATTACATGCCACCATGTGGTTGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp TCCACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAGTCTGGGACGCGGGGTaGTCCTGGCTCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: STRDRPERDDKDITCMCIVWDAG*SWLLWK
Trigger: CTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGAC...TATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp TGCCGGGAGAACTGTTCAGCTAGCGGGGAGTACAGACACACACTGGCATTGGGACTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: CRENCSASGEYRHTLALGLESPS*SSACSP
Trigger: TGGCGAACATGCTGATGACCAGGACGGTGACTCCAG...TCCCAATGCCAGTGTGTGTCTGTACTCCCCGCTAGCTGAACAGTTCTCCCGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp GGGGAGCAGTCAATGGGAAGCTCACTCAGCAGAGACTTCTCGTCACTGAGAAGTTCTCGAGTGAGGTACTaGCAGCGGCGCTCCTCATGC +
Preference number: 4 (lower is better)
Translates to: GEQSMGSSLSRDFSSLRSSRVRY*QRRSSC
Trigger: GCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGA...ACTTCTCAGTGACGAGAAGTCTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
3UTR CAA 72 bp AAGAGCATGAGTAGCTGGGAGCGCCGAGTGTTCTCATaGTACATGATCTCCTCCAGATGGTGGCGGCCACGG +
Preference number: 4 (lower is better)
Translates to: KSMSSWERRVFS*YMISSRWWRPR
Trigger: CCGTGGCCGCCACCATCTGGAGGAGATCATGTACAATGAGAACACTCGGCGCTCCCAGCTACTCATGCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 72 bp TCCTCATGGGTGGTCACCACCAGCACACTGCGGAATTaGTCAAAGAGCATGAGTAGCTGGGAGCGCCGAGTG +
Preference number: 4 (lower is better)
Translates to: SSWVVTTSTLRN*SKSMSSWERRV
Trigger: CACTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAATTCCGCAGTGTGCTGGTGGTGACCACCCATGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR TCA 90 bp TGCTGTTCCCAGCCCCACACCCAATGGCTCACAACCTCTGTAACTCTAGCTCCATCTGGAAGGGGTACCTaGAGAGCAGCTTATTGCCCC +
Preference number: 4 (lower is better)
Translates to: CCSQPHTQWLTTSVTLAPSGRGT*RAAYCP
Trigger: GGGGCAATAAGCTGCTCTTCAGGTACCCCTTCCAGA...TGGAGCTAGAGTTACAGAGGTTGTGAGCCATTGGGTGTGGGGCTGGGAACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp ACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGACCGACCGGGCTTGCAGCAGTGTTGGGTaGCCAACAAACCGTACATTA +
Preference number: 4 (lower is better)
Translates to: TKPNHGCPIAASDQTDRACSSVG*PTNRTL
Trigger: TAATGTACGGTTTGTTGGGCACCCAACACTGCTGCA...AGCCCGGTCGGTCTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp GTGAGGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCCGGCGCTCCTCATGCTaGAGGACAGTAGCAATTCGG +
Preference number: 4 (lower is better)
Translates to: VRSQENHKAQPWLPHSCFRRSSC*RTVAIR
Trigger: CCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG...GAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp CCCACCAACCACATGGTGGCATGTAATGCCCTCTTCTGGTGTCTGAAGACAGCACGTGGTTTATTTGTCTaGGACGCGGGGTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: PTNHMVACNALFWCLKTARGLFV*DAGCSW
Trigger: CCAGGAGCACCCCGCGTCCCAGACAAATAAACCACG...TGCTGTCTTCAGACACCAGAAGAGGGCATTACATGCCACCATGTGGTTGGTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp TCACTGAGAAGTAGCAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCACTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: SLRSSKAWYGRMAFRLRSLESPS*SSACSP
Trigger: TGGCGAACATGCTGATGACCAGGACGGTGACTCCAG...TGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
3UTR CAA 72 bp CCTATCCCAAGACTTCCCTTCCCATCATCCCTTCCTTaGGGTCAGTCACTTCCCACTCGAGGAGTACGGGTG +
Preference number: 4 (lower is better)
Translates to: PIPRLPFPSSLP*GQSLPTRGVRV
Trigger: CACCCGTACTCCTCGAGTGGGAAGTGACTGACCCAAAGGAAGGGATGATGGGAAGGGAAGTCTTGGGATAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
CDS-3UTR TCA 90 bp CTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGCACCAACTCTGGCTGTaGAGGGGACATCATCCTCTC +
Preference number: 4 (lower is better)
Translates to: LKRITKPNHGCPIAASDQHQLWL*RGHHPL
Trigger: GAGAGGATGATGTCCCCTTCACAGCCAGAGTTGGTG...CTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp CCTCAGGAGGAATCAGACTTGAAGCTGCATAGTGGATCTTGTGGGGCAGACAGAGCTTATTGCCCCTGCTaGCCGAGCTCACCAGGATCA +
Preference number: 4 (lower is better)
Translates to: PQEESDLKLHSGSCGADRAYCPC*PSSPGS
Trigger: TGATCCTGGTGAGCTCGGGCAGCAGGGGCAATAAGC...TCTGTCTGCCCCACAAGATCCACTATGCAGCTTCAAGTCTGATTCCTCCTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp CCCACCAACCACATGGTGGCATGTAATGCCCTCTTCTGGTGTCTGAAGACAGCAGGAGCCTGGCAAACATaGGGAGGTCCTCAGGGTTTT +
Preference number: 4 (lower is better)
Translates to: PTNHMVACNALFWCLKTAGAWQT*GGPQGF
Trigger: AAAACCCTGAGGACCTCCGCATGTTTGCCAGGCTCC...TGCTGTCTTCAGACACCAGAAGAGGGCATTACATGCCACCATGTGGTTGGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp ATTGTACATGATCTCCTCCAGATGGTGGCGGCCACGGAAGTAGTGAAGGAGCCTCTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: IVHDLLQMVAATEVVKEPLESPS*SSACSP
Trigger: TGGCGAACATGCTGATGACCAGGACGGTGACTCCAG...AGGCTCCTTCACTACTTCCGTGGCCGCCACCATCTGGAGGAGATCATGTACAAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp CCGACCGGGCTGGGGCTGCCTATCTTCCTAAGGCCAGTCAGGAACTCTGCGGCACGCACATTTCAGATTTaGTTGCCAAAATTGTTGCCA +
Preference number: 4 (lower is better)
Translates to: PTGLGLPIFLRPVRNSAARTFQI*LPKLLP
Trigger: TGGCAACAATTTTGGCAACCAAATCTGAAATGTGCG...TGCCGCAGAGTTCCTGACTGGCCTTAGGAAGATAGGCAGCCCCAGCCCGGTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
CDS-3UTR CCA 90 bp TCCACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATATCTCGAGTGAGGTACTaGCAGCGGCGCTCCTCATGC +
Preference number: 4 (lower is better)
Translates to: STRDRPERDDKDITCMCISRVRY*QRRSSC
Trigger: GCATGAGGAGCGCCGCTGCCAGTACCTCACTCGAGA...TATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp GGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCATGGTACGGGCGGATaGCTTTCAGGCTCCGTTCAA +
Preference number: 4 (lower is better)
Translates to: GLKRITKPNHGCPIAASDHGTGG*LSGSVQ
Trigger: TTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATG...GTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp AGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTGTGAGGCAGGGTCCTCATGGGTaGTCACCACCAGCACACTGC +
Preference number: 4 (lower is better)
Translates to: RQEDQEFKVILNYKASVRQGPHG*SPPAHC
Trigger: GCAGTGTGCTGGTGGTGACCACCCATGAGGACCCTG...CCTCACACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp CTGAGAAGTAGCAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTG +
Preference number: 4 (lower is better)
Translates to: LRSSKAWYGRMAFRLRSIADTSS*SARISL
Trigger: CAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGC...TATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
CDS-3UTR TCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTCAGCAGACGTGGTCTTaGTCACCCGCACCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGQQTWS*SPAPEP
Trigger: CGGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTG...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp AGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGAAAAGGTATGCAGCTGGATaGGGAGCCGGCGCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: RDRPERDDKDITCMCIKKRYAAG*GAGAAA
Trigger: TGCTGCAGCGCCGGCTCCTCATCCAGCTGCATACCT...TTTCTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp TTATCCGGGTCAGGAAACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAGAGCATTGGGTGTGCTaGGGCTGCGGCCACCAACTC +
Preference number: 4 (lower is better)
Translates to: LSGSGNWVTQYVWQQRGKEHWVC*GCGHQL
Trigger: GAGTTGGTGGCCGCAGCCTCAGCACACCCAATGCTC...TTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGTTTCCTGACCCGGATAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp GCACTTGGAGGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACGAGCAGCTCAGCACTTaGGTTGTCCATACTGGGGCT +
Preference number: 4 (lower is better)
Translates to: ALGGQRQEDQEFKVILNYEQLST*VVHTGA
Trigger: AGCCCCAGTATGGACAACTCAAGTGCTGAGCTGCTC...GTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCCTCCAAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp GAGGTACTGGCAGCGGCGCTCCTCATGCTGCAGGACAGTAGCAATTCGGCGGGAGGTTGCCAAAATTGTTaGCAGAATAACATCCGAGAA +
Preference number: 4 (lower is better)
Translates to: EVLAAALLMLQDSSNSAGGCQNC*QNNIRE
Trigger: TTCTCGGATGTTATTCTGGCAACAATTTTGGCAACC...TCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCGCTGCCAGTACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS-3UTR GCA 90 bp CCCACCAACCACATGGTGGCATGTAATGCCCTCTTCTGGTGTCTGAAGACAGCACTCAGGGTTTTGGGCTaGAGGCACATTGAGGATAGC +
Preference number: 4 (lower is better)
Translates to: PTNHMVACNALFWCLKTALRVLG*RHIEDS
Trigger: GCTATCCTCAATGTGCCTGCAGCCCAAAACCCTGAG...TGCTGTCTTCAGACACCAGAAGAGGGCATTACATGCCACCATGTGGTTGGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp AGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTGTGAGGTGCTCCTGGCTCCTCTaGAAGGGGTACCTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: RQEDQEFKVILNYKASVRCSWLL*KGYLKS
Trigger: GCTCTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCA...CCTCACACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp GGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACGAGCCAGCTTGCACTTaGGTAGGATGTGCTGGAATG +
Preference number: 4 (lower is better)
Translates to: GLKRITKPNHGCPIAASDEPACT*VGCAGM
Trigger: CATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTC...GTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
3UTR CAA 72 bp CTCCTGAACTCCGATAAAGAAACAGGCAAGGAAAACTaGGCCAGGACAGATGGCAGGTCATGGGACGGGAAC +
Preference number: 4 (lower is better)
Translates to: LLNSDKETGKEN*ARTDGRSWDGN
Trigger: GTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGTTTCTTTATCGGAGTTCAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124640.8
ENSMUST00000136903.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR TCA 90 bp CCCACCAACCACATGGTGGCATGTAATGCCCTCTTCTGGTGTCTGAAGACAGCATGCTGGAATGGGGACTaGGGACCTTCATTTGCATCA +
Preference number: 4 (lower is better)
Translates to: PTNHMVACNALFWCLKTACWNGD*GPSFAS
Trigger: TGATGCAAATGAAGGTCCTCAGTCCCCATTCCAGCA...TGCTGTCTTCAGACACCAGAAGAGGGCATTACATGCCACCATGTGGTTGGTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp AAGACCTTCTCCAGCTCAGCAATATTAAGCTGCCGTAAGGACCAGATTGAAGAGCCTCTTGTTCAGTGGTaGGTCCCCACTGGGGAGCAG +
Preference number: 4 (lower is better)
Translates to: KTFSSSAILSCRKDQIEEPLVQW*VPTGEQ
Trigger: CTGCTCCCCAGTGGGGACTCACCACTGAACAAGAGG...CTCTTCAATCTGGTCCTTACGGCAGCTTAATATTGCTGAGCTGGAGAAGGTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTTGCCCCAGAGCATGCTaGAGCAGTGTTGGGTGCCCA +
Preference number: 4 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGCPRAC*SSVGCP
Trigger: TGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCA...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp GGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTTCCTGGGCTAGCTGCTaGAGGTTCTTCACAGCAGAC +
Preference number: 4 (lower is better)
Translates to: GQRQEDQEFKVILNYKASSWASC*RFFTAD
Trigger: GTCTGCTGTGAAGAACCTGCAGCAGCTAGCCCAGGA...ACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTATGAGGAGCCGGCGCTaGAGCATCCACACCACCATC +
Preference number: 4 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGMRSRR*SIHTTI
Trigger: GATGGTGGTGTGGATGCTGCAGCGCCGGCTCCTCAT...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp TGTAACTCTAGCTCCAAGGCATGCTTTCTTCTGACCTCTGAGGGCACACATACAACCATCTGGATGAGCTaGGTCTCCTGTGCAGGGGGA +
Preference number: 4 (lower is better)
Translates to: CNSSSKACFLLTSEGTHTTIWMS*VSCAGG
Trigger: TCCCCCTGCACAGGAGACCCAGCTCATCCAGATGGT...TGTATGTGTGCCCTCAGAGGTCAGAAGAAAGCATGCCTTGGAGCTAGAGTTACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp AGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTGTGAGGAGGTCCTCAGGGTTTTaGGCTGCAGGCACATTGAGG +
Preference number: 4 (lower is better)
Translates to: RQEDQEFKVILNYKASVRRSSGF*AAGTLR
Trigger: CCTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCT...CCTCACACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp GCACTTGGAGGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACATAACAGGGTCCTCATaGGTGGTCACCACCAGCACA +
Preference number: 4 (lower is better)
Translates to: ALGGQRQEDQEFKVILNYITGSS*VVTTST
Trigger: TGTGCTGGTGGTGACCACCCATGAGGACCCTGTTAT...GTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCCTCCAAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp GCACTTGGAGGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACCATGTGAGCAGTGCCTaGAAGACGGCAATAACAGGG +
Preference number: 4 (lower is better)
Translates to: ALGGQRQEDQEFKVILNYHVSSA*KTAITG
Trigger: CCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATG...GTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCCTCCAAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp GCTTCCCAAGGTACTCAGGGAAGGCTTAGCAGCCTAGGCCATGCTATAGAGAAGTCTGTTTTGGAGACCTaGAGTCACCGTCCTGGTCAT +
Preference number: 4 (lower is better)
Translates to: ASQGTQGRLSSLGHAIEKSVLET*SHRPGH
Trigger: ATGACCAGGACGGTGACTCCAGGTCTCCAAAACAGA...CTTCTCTATAGCATGGCCTAGGCTGCTAAGCCTTCCCTGAGTACCTTGGGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
CDS-3UTR TCA 90 bp GGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTGAGCCAGAGGGCTCCTaGACTCCGATAAAGAAACAG +
Preference number: 4 (lower is better)
Translates to: GQRQEDQEFKVILNYKASEPEGS*TPIKKQ
Trigger: CTGTTTCTTTATCGGAGTTCAGGAGCCCTCTGGCTC...ACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp AAGACCTTCTCCAGCTCAGCAATATTAAGCTGCCGTAAGGACCAGATTGAAGAGGCTTATTGCCCCTGCTaGCCGAGCTCACCAGGATCA +
Preference number: 4 (lower is better)
Translates to: KTFSSSAILSCRKDQIEEAYCPC*PSSPGS
Trigger: TGATCCTGGTGAGCTCGGGCAGCAGGGGCAATAAGC...CTCTTCAATCTGGTCCTTACGGCAGCTTAATATTGCTGAGCTGGAGAAGGTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp GTGAGGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTCACCACCAGCACACTaGGGAATTTGTCAAAGAGCA +
Preference number: 4 (lower is better)
Translates to: VRSQENHKAQPWLPHSCFSPPAH*GICQRA
Trigger: TGCTCTTTGACAAATTCCGCAGTGTGCTGGTGGTGA...GAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp TGTAACTCTAGCTCCAAGGCATGCTTTCTTCTGACCTCTGAGGGCACACATACACTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCA +
Preference number: 4 (lower is better)
Translates to: CNSSSKACFLLTSEGTHTLESPS*SSACSP
Trigger: TGGCGAACATGCTGATGACCAGGACGGTGACTCCAG...TGTATGTGTGCCCTCAGAGGTCAGAAGAAAGCATGCCTTGGAGCTAGAGTTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp AGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGAAAGGGGCTCCTCTTCGCTaGGTGAGGCCATTAGGCAAA +
Preference number: 4 (lower is better)
Translates to: RDRPERDDKDITCMCIKKGAPLR*VRPLGK
Trigger: TTTGCCTAATGGCCTCACCCAGCGAAGAGGAGCCCC...TTTCTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
3UTR CAA 72 bp AGTATACCAGGTGAGCTGCCAACTGGAAGACCTCACTaGGATCCTAGCCCCATGGCATCAGAGATGGAAAGA +
Preference number: 4 (lower is better)
Translates to: SIPGELPTGRPH*DPSPMASEMER
Trigger: TCTTTCCATCTCTGATGCCATGGGGCTAGGATCCAAGTGAGGTCTTCCAGTTGGCAGCTCACCTGGTATACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS-3UTR TCA 90 bp CTTGGAGGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGAGACTTCTCGTCACTaGGAAGTAGCAAGGCATGGT +
Preference number: 4 (lower is better)
Translates to: LGGQRQEDQEFKVILNYKETSRH*EVARHG
Trigger: ACCATGCCTTGCTACTTCTCAGTGACGAGAAGTCTC...CTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCCTCCAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp TGTAACTCTAGCTCCAAGGCATGCTTTCTTCTGACCTCTGAGGGCACACATACAATTTGTCAAAGAGCATaGGTAGCTGGGAGCGCCGAG +
Preference number: 4 (lower is better)
Translates to: CNSSSKACFLLTSEGTHTICQRA*VAGSAE
Trigger: CTCGGCGCTCCCAGCTACTCATGCTCTTTGACAAAT...TGTATGTGTGCCCTCAGAGGTCAGAAGAAAGCATGCCTTGGAGCTAGAGTTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp CATGTGAGCAGTGCCTGGAAGACGGCAATAACAGGGTCCTCATGGGTGGTCACCCGCACATTTCAGATTTaGTTGCCAAAATTGTTGCCA +
Preference number: 4 (lower is better)
Translates to: HVSSAWKTAITGSSWVVTRTFQI*LPKLLP
Trigger: TGGCAACAATTTTGGCAACCAAATCTGAAATGTGCG...GGTGACCACCCATGAGGACCCTGTTATTGCCGTCTTCCAGGCACTGCTCACATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS-3UTR CCA 90 bp CCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTGTATACACCTCCGGGGAGCAGTCAATaGGAAGCTCACTCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: PVCMATERKNINVQVYTPPGSSQ*EAHSAE
Trigger: CTCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGG...AGGTGTATACACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp CTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGGTTGTTCTCACACAGTaGGTAGATGATGACAGCCTT +
Preference number: 4 (lower is better)
Translates to: LKRITKPNHGCPIAASDQVVLTQ*VDDDSL
Trigger: AAGGCTGTCATCATCTACCCACTGTGTGAGAACAAC...CTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp TGTAACTCTAGCTCCAAGGCATGCTTTCTTCTGACCTCTGAGGGCACACATACAAGTAGTGAAGGAGCCTaGCAAACATGCGGAGGTCCT +
Preference number: 4 (lower is better)
Translates to: CNSSSKACFLLTSEGTHTSSEGA*QTCGGP
Trigger: AGGACCTCCGCATGTTTGCCAGGCTCCTTCACTACT...TGTATGTGTGCCCTCAGAGGTCAGAAGAAAGCATGCCTTGGAGCTAGAGTTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
3UTR CAA 72 bp ATACCTCTACAACACTGGGTGTGCATGGCAGGAGGCTaGAGGTTTACTGCCAAGCTTTCTGTCTTTCCCACA +
Preference number: 4 (lower is better)
Translates to: IPLQHWVCMAGG*RFTAKLSVFPT
Trigger: TGTGGGAAAGACAGAAAGCTTGGCAGTAAACCTCAAGCCTCCTGCCATGCACACCCAGTGTTGTAGAGGTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp TTATCCGGGTCAGGAAACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAATGCTGCAGCAGTGTTaGGTGCCCAACAAACCGTAC +
Preference number: 4 (lower is better)
Translates to: LSGSGNWVTQYVWQQRGKMLQQC*VPNKPY
Trigger: GTACGGTTTGTTGGGCACCCAACACTGCTGCAGCAT...TTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGTTTCCTGACCCGGATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp CTGTATGTGTATAAAGAAAGGACTTGGACTCTGAAGACACATCCTGGGGGCTGGGAGATGGATCTGTTTTaGAGACCTGCCCCAGAGCAT +
Preference number: 4 (lower is better)
Translates to: LYVYKERTWTLKTHPGGWEMDLF*RPAPEH
Trigger: ATGCTCTGGGGCAGGTCTCCAAAACAGATCCATCTC...CCAGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTTCTTTATACACATACAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp AGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTGTGAGGTTCCCGCTTTGGAGATaGATCTGTTTTGGAGACCTG +
Preference number: 4 (lower is better)
Translates to: RQEDQEFKVILNYKASVRFPLWR*ICFGDL
Trigger: CAGGTCTCCAAAACAGATCCATCTCCAAAGCGGGAA...CCTCACACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR CCA 90 bp AGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGAAAATCCACACCACCATCTaGATGAGCTGGGTCTCCTGT +
Preference number: 4 (lower is better)
Translates to: RDRPERDDKDITCMCIKKIHTTI*MSWVSC
Trigger: ACAGGAGACCCAGCTCATCCAGATGGTGGTGTGGAT...TTTCTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
3UTR CAA 72 bp GGCAGTGTGAATGGGGAAAGTAGGATTGTATCTGCTTaGAAACCCTTCAGACCCACATCACTCCTGGAATGG +
Preference number: 4 (lower is better)
Translates to: GSVNGESRIVSA*KPFRPTSLLEW
Trigger: CCATTCCAGGAGTGATGTGGGTCTGAAGGGTTTCAAAGCAGATACAATCCTACTTTCCCCATTCACACTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
CDS-3UTR TCA 90 bp CCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTGTATACACCTGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTG +
Preference number: 4 (lower is better)
Translates to: PVCMATERKNINVQVYTPADTSS*SARISL
Trigger: CAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGC...AGGTGTATACACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp CCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTGTATACACCTTGTCATAAGCTTCTTTaGGGTCCCGAGCCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: PVCMATERKNINVQVYTPCHKLL*GPEPAC
Trigger: GCAAGCTGGCTCGGGACCTCAAAGAAGCTTATGACA...AGGTGTATACACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR TCA 90 bp ACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTTGGCATTGGGAGACATaGCATAGACGTTGTTCTCAC +
Preference number: 4 (lower is better)
Translates to: TGLPSMYGNREEKHQRAGWHWET*HRRCSH
Trigger: GTGAGAACAACGTCTATGTCATGTCTCCCAATGCCA...ACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR GCA 90 bp CTTGGAGGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGAGCATTGGCCCTCAGTaGAAATACCACGTTAAAAAG +
Preference number: 4 (lower is better)
Translates to: LGGQRQEDQEFKVILNYKSIGPQ*KYHVKK
Trigger: CTTTTTAACGTGGTATTTGCACTGAGGGCCAATGCT...CTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCCTCCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CCA 90 bp TTATCCGGGTCAGGAAACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAATTCCCGCTTTGGAGATaGATCTGTTTTGGAGACCTG +
Preference number: 4 (lower is better)
Translates to: LSGSGNWVTQYVWQQRGKFPLWR*ICFGDL
Trigger: CAGGTCTCCAAAACAGATCCATCTCCAAAGCGGGAA...TTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGTTTCCTGACCCGGATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
3UTR CAA 72 bp TCATGCTGCAGGACAGTAGCAATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACTGATGGATCAGCATTG +
Preference number: 4 (lower is better)
Translates to: SCCRTVAIRRDK*CRQFITDGSAL
Trigger: CAATGCTGATCCATCAGTGATAAACTGTCTACACAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000136903.8
ENSMUST00000141859.8
CDS-3UTR GCA 90 bp CCAGTATGTATGGCAACAGAGAGGAAAAACATCAACGTGCAGGTGTATACACCTCTGAGGACCTTCATTTaGATCAGCCATAGCAGACAC +
Preference number: 4 (lower is better)
Translates to: PVCMATERKNINVQVYTPLRTFI*ISHSRH
Trigger: GTGTCTGCTATGGCTGATGCAAATGAAGGTCCTCAG...AGGTGTATACACCTGCACGTTGATGTTTTTCCTCTCTGTTGCCATACATACTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
3UTR CAA 72 bp TCCACTTGCTGTCAGTTCCACCATTCAGAGATAAGGTaGGGGAAGGACAGTTCTAGGATCAGAATTCAGACT +
Preference number: 4 (lower is better)
Translates to: STCCQFHHSEIR*GKDSSRIRIQT
Trigger: AGTCTGAATTCTGATCCTAGAACTGTCCTTCCCCAACCTTATCTCTGAATGGTGGAACTGACAGCAAGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
CDS-3UTR GCA 90 bp TTATCCGGGTCAGGAAACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAGGTTGCCAAAATTGTTaGCAGAATAACATCCGAGAA +
Preference number: 4 (lower is better)
Translates to: LSGSGNWVTQYVWQQRGKGCQNC*QNNIRE
Trigger: TTCTCGGATGTTATTCTGGCAACAATTTTGGCAACC...TTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGTTTCCTGACCCGGATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
CDS-3UTR CCA 90 bp ACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGTTCAGTTCAAATTTTTaGCCGCACATTTCAGATTTG +
Preference number: 4 (lower is better)
Translates to: TRDRPERDDKDITCMCIKFSSNF*PHISDL
Trigger: CAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAA...CTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp AGCTGGCACAGTGGGTCGGGCTGCAGAGACGGTCACGTCAGCATCCATTCCCGGCTGAAGAGCAGCTTATaGCCCCTGCTGCCCGAGCTC +
Preference number: 5 (lower is better)
Translates to: SWHSGSGCRDGHVSIHSRLKSSL*PLLPEL
Trigger: GAGCTCGGGCAGCAGGGGCAATAAGCTGCTCTTCAG...CCGGGAATGGATGCTGACGTGACCGTCTCTGCAGCCCGACCCACTGTGCCAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124640.8
CDS-3UTR CAA 90 bp ACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGACCGACCGGGCTACAGCAGACGTGGTCTaGATCACCCGCACCAGAGCC +
Preference number: 5 (lower is better)
Translates to: TKPNHGCPIAASDQTDRATADVV*ITRTRA
Trigger: GGCTCTGGTGCGGGTGATCAAGACCACGTCTGCTGT...AGCCCGGTCGGTCTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp TTGATCACCCGCACCAGAGCCGGGGAGCAGTCAATGGGAAGCTCACTCAGCAGACTGAAGAGCAGCTTATaGCCCCTGCTGCCCGAGCTC +
Preference number: 5 (lower is better)
Translates to: LITRTRAGEQSMGSSLSRLKSSL*PLLPEL
Trigger: GAGCTCGGGCAGCAGGGGCAATAAGCTGCTCTTCAG...TCTGCTGAGTGAGCTTCCCATTGACTGCTCCCCGGCTCTGGTGCGGGTGATCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CAA 90 bp ACAGGCAAGGAAAACTTGGCCAGGACAGATGGCAGGTCATGGGACGGGAACTGCCTGAAGAGCAGCTTATaGCCCCTGCTGCCCGAGCTC +
Preference number: 5 (lower is better)
Translates to: TGKENLARTDGRSWDGNCLKSSL*PLLPEL
Trigger: GAGCTCGGGCAGCAGGGGCAATAAGCTGCTCTTCAG...GCAGTTCCCGTCCCATGACCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS CCA 90 bp TCGCCAGTGTTGTTGACAGCATATCTGCTCCGTGGTTTATTTGTCTaGGACGCGGGGTGCTCCTGGCTCCTCTGGAAGGGGTACCTGAAG +
Preference number: 5 (lower is better)
Translates to: SPVLLTAYLLRGLFV*DAGCSWLLWKGYLK
Trigger: CTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CAA 90 bp TGCTGTTCCCAGCCCCACACCCAATGGCTCACAACCTCTGTAACTCTAGCTCCACCAAAGCTTAGAGCATaGGGTGTGCTGAGGCTGCGG +
Preference number: 5 (lower is better)
Translates to: CCSQPHTQWLTTSVTLAPPKLRA*GVLRLR
Trigger: CCGCAGCCTCAGCACACCCAATGCTCTAAGCTTTGG...TGGAGCTAGAGTTACAGAGGTTGTGAGCCATTGGGTGTGGGGCTGGGAACAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS TCA 90 bp GCCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTTaGCAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGGT +
Preference number: 5 (lower is better)
Translates to: AWSHRPGHQHVRQCC*QHICSVVYLSGTRG
Trigger: ACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
CDS-3UTR CAA 90 bp CTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGGAGGTCCTCAGGGTTTaGGGCTGCAGGCACATTGAG +
Preference number: 5 (lower is better)
Translates to: LKRITKPNHGCPIAASDQEVLRV*GCRHIE
Trigger: CTCAATGTGCCTGCAGCCCAAAACCCTGAGGACCTC...CTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS TCA 90 bp ACCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTTaGCAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGGT +
Preference number: 5 (lower is better)
Translates to: TWSHRPGHQHVRQCC*QHICSVVYLSGTRG
Trigger: ACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000141859.8
CDS TCA 90 bp TGCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTTaGCAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGGT +
Preference number: 5 (lower is better)
Translates to: CWSHRPGHQHVRQCC*QHICSVVYLSGTRG
Trigger: ACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS GCA 90 bp TTGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGGTaGTCCTGGCTCCTCTGGAAGGGGTACCTGAAGAGCAGCTTATTG +
Preference number: 5 (lower is better)
Translates to: LTAYLLRGLFVWDAG*SWLLWKGYLKSSLL
Trigger: CAATAAGCTGCTCTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS-3UTR CAA 90 bp GGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGGCAAGTCTGAAGAGCAGCTTATaGCCCCTGCTGCCCGAGCTC +
Preference number: 5 (lower is better)
Translates to: GQRQEDQEFKVILNYKASLKSSL*PLLPEL
Trigger: GAGCTCGGGCAGCAGGGGCAATAAGCTGCTCTTCAG...ACTTGCCTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000141859.8
CDS-3UTR CAA 90 bp CTGAGAAGTAGCAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAAGTGCTAGGATCAGCTaGGCCTCTCGAGTGAGGTAC +
Preference number: 5 (lower is better)
Translates to: LRSSKAWYGRMAFRLRSISARIS*ASRVRY
Trigger: GTACCTCACTCGAGAGGCCAAGCTGATCCTAGCACT...TATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACTTCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
CDS-3UTR CAA 90 bp CCCACCAACCACATGGTGGCATGTAATGCCCTCTTCTGGTGTCTGAAGACAGCACGAGCCAGCTTGCACTaGGGTAGGATGTGCTGGAAT +
Preference number: 5 (lower is better)
Translates to: PTNHMVACNALFWCLKTARASLH*GRMCWN
Trigger: ATTCCAGCACATCCTACCCAAGTGCAAGCTGGCTCG...TGCTGTCTTCAGACACCAGAAGAGGGCATTACATGCCACCATGTGGTTGGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp TGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCCTCAGGAGGAATCAGAACTGATGGATCAGCATaGGCCAGGATCACGCTGATG +
Preference number: 5 (lower is better)
Translates to: WYGRMAFRLRSIASGGIRTDGSA*ARITLM
Trigger: CATCAGCGTGATCCTGGCCAATGCTGATCCATCAGT...TCTGATTCCTCCTGAGGCTATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
CDS TCA 90 bp ACCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTTaGCAGCATATCTGCTCCGTGGTTTATCAGGATCACGCTGATGGG +
Preference number: 5 (lower is better)
Translates to: TWSHRPGHQHVRQCC*QHICSVVYQDHADG
Trigger: CCCATCAGCGTGATCCTGATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS-3UTR CAA 90 bp ACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGAGGTCCCGAGCCAGCTaGCACTTGGGTAGGATGTGC +
Preference number: 5 (lower is better)
Translates to: TRDRPERDDKDITCMCIKRSRAS*HLGRMC
Trigger: GCACATCCTACCCAAGTGCAAGCTGGCTCGGGACCT...CTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp CTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCAGAGCTCAGCACTTGAGTaGTCCATACTGGGGCTGGTA +
Preference number: 5 (lower is better)
Translates to: LKRITKPNHGCPIAASDQSSALE*SILGLV
Trigger: TACCAGCCCCAGTATGGACAACTCAAGTGCTGAGCT...CTGGTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS CCA 90 bp CCGCTTTGGAGATGGATCTGTTTTGGAGACCTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCAGTGTTGTTGACAGCATATCTGCTC +
Preference number: 5 (lower is better)
Translates to: PLWRWICFGDLESPS*SSACSPVLLTAYLL
Trigger: GAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGTCTCCAAAACAGATCCATCTCCAAAGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
CDS-3UTR CAA 90 bp CTTGGAGGACAGAGGCAGGAGGATCAGGAGTTCAAGGTCATCCTTAACTACAAGAGTGCTAGGATCAGCTaGGCCTCTCGAGTGAGGTAC +
Preference number: 5 (lower is better)
Translates to: LGGQRQEDQEFKVILNYKSARIS*ASRVRY
Trigger: GTACCTCACTCGAGAGGCCAAGCTGATCCTAGCACT...CTTGTAGTTAAGGATGACCTTGAACTCCTGATCCTCCTGCCTCTGTCCTCCAAG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp GTGAGGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTTCTCTGTCATCCTCTaGTTCAGTGGTGAGTCCCCA +
Preference number: 5 (lower is better)
Translates to: VRSQENHKAQPWLPHSCFFSVIL*FSGESP
Trigger: TGGGGACTCACCACTGAACAAGAGGATGACAGAGAA...GAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACCTCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS GCA 90 bp CGCTTTGGAGATGGATCTGTTTTGGAGACCTGCCCCAGAGCATGCTaGAGCAGTGTTGGGTGCCCAACAAACCGTACATTATCAATCTTC +
Preference number: 5 (lower is better)
Translates to: RFGDGSVLETCPRAC*SSVGCPTNRTLSIF
Trigger: GAAGATTGATAATGTACGGTTTGTTGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGTCTCCAAAACAGATCCATCTCCAAAGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000129010.2
CDS-3UTR CAA 90 bp AGTAGCAAGGCATGGTACGGGCGGATGGCTTTCAGGCTCCGTTCAATAGCCTCAATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACT +
Preference number: 5 (lower is better)
Translates to: SSKAWYGRMAFRLRSIASIRRDK*CRQFIT
Trigger: AGTGATAAACTGTCTACACAACTTGTCCCGCCGAAT...TGAGGCTATTGAACGGAGCCTGAAAGCCATCCGCCCGTACCATGCCTTGCTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
CDS-3UTR CAA 90 bp GTGAGGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCCCGCACATTTCAGATTaGGTTGCCAAAATTGTTGCC +
Preference number: 5 (lower is better)
Translates to: VRSQENHKAQPWLPHSCFPHISD*VAKIVA
Trigger: GGCAACAATTTTGGCAACCAAATCTGAAATGTGCGG...GAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACCTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000136903.8
CDS-3UTR CAA 90 bp TTATCCGGGTCAGGAAACTGGGTTACCCAGTATGTATGGCAACAGAGAGGAAAAACAGGCAAGGAAAACTaGGCCAGGACAGATGGCAGG +
Preference number: 5 (lower is better)
Translates to: LSGSGNWVTQYVWQQRGKTGKEN*ARTDGR
Trigger: CCTGCCATCTGTCCTGGCCAAGTTTTCCTTGCCTGT...TTTTCCTCTCTGTTGCCATACATACTGGGTAACCCAGTTTCCTGACCCGGATAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp TCCACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATACAGGAGGAATCAGACTaGAAGCTGCATAGTGGATCT +
Preference number: 5 (lower is better)
Translates to: STRDRPERDDKDITCMCIQEESD*KLHSGS
Trigger: AGATCCACTATGCAGCTTCAAGTCTGATTCCTCCTG...TATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp ACAAGGGACCGGCCGGAAAGGGATGACAAGGACATAACCTGTATGTGTATAAAGCGCCGAGTGTTCTCATaGTACATGATCTCCTCCAGA +
Preference number: 5 (lower is better)
Translates to: TRDRPERDDKDITCMCIKRRVFS*YMISSR
Trigger: TCTGGAGGAGATCATGTACAATGAGAACACTCGGCG...CTTTATACACATACAGGTTATGTCCTTGTCATCCCTTTCCGGCCGGTCCCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS CCA 90 bp TGGATCTGTTTTGGAGACCTGCCCCAGAGCATGCTGCAGCAGTGTTaGGTGCCCAACAAACCGTACATTATCAATCTTCAGTTCAAATTT +
Preference number: 5 (lower is better)
Translates to: WICFGDLPQSMLQQC*VPNKPYIINLQFKF
Trigger: AAATTTGAACTGAAGATTGATAATGTACGGTTTGTTGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGTCTCCAAAACAGATCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000129010.2
CDS-3UTR CAA 90 bp GGTCTCAAGAGAATCACAAAGCCCAACCATGGCTGCCCCATAGCTGCTTCTGACCTTCAGTTCAAATTTTaGGCCGCACATTTCAGATTT +
Preference number: 5 (lower is better)
Translates to: GLKRITKPNHGCPIAASDLQFKF*AAHFRF
Trigger: AAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAG...GTCAGAAGCAGCTATGGGGCAGCCATGGTTGGGCTTTGTGATTCTCTTGAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS-3UTR CAA 90 bp CTGTATGTGTATAAAGAAAGGACTTGGACTCTGAAGACACATCCTGGGGGCTGGATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACT +
Preference number: 5 (lower is better)
Translates to: LYVYKERTWTLKTHPGGWIRRDK*CRQFIT
Trigger: AGTGATAAACTGTCTACACAACTTGTCCCGCCGAAT...CCAGCCCCCAGGATGTGTCTTCAGAGTCCAAGTCCTTTCTTTATACACATACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020530.12
CDS GCA 90 bp TTCAAATTTTTGGCCGCACATTTCAGATTTGGTTGCCAAAATTGTTaGCAGAATAACATCCGAGAACCTGGAGTCACCGTCCTGGTCATC +
Preference number: 5 (lower is better)
Translates to: FKFLAAHFRFGCQNC*QNNIREPGVTVLVI
Trigger: GATGACCAGGACGGTGACTCCAGGTTCTCGGATGTTATTCTGGCAACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000136903.8
CDS GCA 90 bp ATCAATCTTCAGTTCAAATTTTTGGCCGCACATTTCAGATTTGGTTaGCAAAATTGTTGCCAGAATAACATCCGAGAACCTGGAGTCACC +
Preference number: 5 (lower is better)
Translates to: INLQFKFLAAHFRFG*QNCCQNNIREPGVT
Trigger: GGTGACTCCAGGTTCTCGGATGTTATTCTGGCAACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAGATTGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
CDS GCA 90 bp ATCAATCTTCAGTTCAAATTTTTGGCCGCACATTTCAGATTTGGTTaGCAAAATTGTTGCCAGAATAACATCCGAGAACCCTGCAACCAA +
Preference number: 5 (lower is better)
Translates to: INLQFKFLAAHFRFG*QNCCQNNIREPCNQ
Trigger: TTGGTTGCAGGGTTCTCGGATGTTATTCTGGCAACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAGATTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS CCA 90 bp GGGTGCCCAACAAACCGTACATTATCAATCTTCAGTTCAAATTTTTaGCCGCACATTTCAGATTTGGTTGCCAAAATTGTTGCCAGAATA +
Preference number: 5 (lower is better)
Translates to: GCPTNRTLSIFSSNF*PHISDLVAKIVARI
Trigger: TATTCTGGCAACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAGATTGATAATGTACGGTTTGTTGGGCACCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000129010.2
CDS CAA 72 bp TGGCTCCTCTGGAAGGGGTACCTGAAGAGCAGCTTATaGCCCCTGCTGCCCGAGCTCACCAGGATCACGCTG +
Preference number: 6 (lower is better)
Translates to: WLLWKGYLKSSL*PLLPELTRITL
Trigger: CAGCGTGATCCTGGTGAGCTCGGGCAGCAGGGGCAATAAGCTGCTCTTCAGGTACCCCTTCCAGAGGAGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS GCA 72 bp TATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGGTaGTCCTGGCTCCTCTGGAAGGGGTACCTGAAGAGC +
Preference number: 6 (lower is better)
Translates to: YLLRGLFVWDAG*SWLLWKGYLKS
Trigger: GCTCTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS CCA 72 bp CTCCGTGGTTTATTTGTCTGGGACGCGGGGTGCTCCTaGCTCCTCTGGAAGGGGTACCTGAAGAGCAGCTTA +
Preference number: 6 (lower is better)
Translates to: LRGLFVWDAGCS*LLWKGYLKSSL
Trigger: TAAGCTGCTCTTCAGGTACCCCTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGACAAATAAACCACGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS CAA 90 bp GGCCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTaGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGG +
Preference number: 6 (lower is better)
Translates to: GLESPSWSSACSPVL*TAYLLRGLFVWDAG
Trigger: CCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
CDS CCA 72 bp TTGTTGACAGCATATCTGCTCCGTGGTTTATTTGTCTaGGACGCGGGGTGCTCCTGGCTCCTCTGGAAGGGG +
Preference number: 6 (lower is better)
Translates to: LLTAYLLRGLFV*DAGCSWLLWKG
Trigger: CCCCTTCCAGAGGAGCCAGGAGCACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS CAA 90 bp CGGCGCTCCTCATGCTGCAGGACAGTAGCAATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACTGATGGATCAGCATTGGCCTGCCCC +
Preference number: 6 (lower is better)
Translates to: RRSSCCRTVAIRRDK*CRQFITDGSALACP
Trigger: GGGGCAGGCCAATGCTGATCCATCAGTGATAAACTGTCTACACAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109389.9
CDS CAA 90 bp GACCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTaGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGG +
Preference number: 6 (lower is better)
Translates to: DLESPSWSSACSPVL*TAYLLRGLFVWDAG
Trigger: CCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
CDS TCA 72 bp TGTGCACAGGCATCAGCCATAGCAGACACCTCATCCTaGAGTGCTAGGATCAGCTTGGCCTCTCGAGTGAGG +
Preference number: 6 (lower is better)
Translates to: CAQASAIADTSS*SARISLASRVR
Trigger: CCTCACTCGAGAGGCCAAGCTGATCCTAGCACTTCAGGATGAGGTGTCTGCTATGGCTGATGCCTGTGCACA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
CDS GCA 72 bp ATCACTGATGGATCAGCATTGGCCTGCCCCAGAGCATaGTGCAGCAGTGTTGGGTGCCCAACAAACCGTACA +
Preference number: 6 (lower is better)
Translates to: ITDGSALACPRA*CSSVGCPTNRT
Trigger: TGTACGGTTTGTTGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGCCAATGCTGATCCATCAGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109389.9
CDS CCA 72 bp TCGGTTGGAGGACATGGCTTGCTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCAGTGTTGTTGACAGCA +
Preference number: 6 (lower is better)
Translates to: SVGGHGLLESPS*SSACSPVLLTA
Trigger: TGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGCAAGCCATGTCCTCCAACCGA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS CAA 90 bp AACCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTaGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGG +
Preference number: 6 (lower is better)
Translates to: NLESPSWSSACSPVL*TAYLLRGLFVWDAG
Trigger: CCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
CDS CAA 90 bp TTGCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTaGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCGGGG +
Preference number: 6 (lower is better)
Translates to: LLESPSWSSACSPVL*TAYLLRGLFVWDAG
Trigger: CCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS CAA 90 bp GGCTTGCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTaGTTGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCG +
Preference number: 6 (lower is better)
Translates to: GLLESPSWSSACSPV*LTAYLLRGLFVWDA
Trigger: CGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGCAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS CAA 90 bp GGAGACCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTaGTTGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCG +
Preference number: 6 (lower is better)
Translates to: GDLESPSWSSACSPV*LTAYLLRGLFVWDA
Trigger: CGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
CDS CCA 72 bp ATGTTCGCCAGTGTTGTTGACAGCATATCTGCTCCGTaGTTTATTTGTCTGGGACGCGGGGTGCTCCTGGCT +
Preference number: 6 (lower is better)
Translates to: MFASVVDSISAP*FICLGRGVLLA
Trigger: AGCCAGGAGCACCCCGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS CAA 90 bp GAGAACCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTaGTTGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCG +
Preference number: 6 (lower is better)
Translates to: ENLESPSWSSACSPV*LTAYLLRGLFVWDA
Trigger: CGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGTTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
CDS CAA 90 bp ATTGGCCTGGAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTaGTTGACAGCATATCTGCTCCGTGGTTTATTTGTCTGGGACGCG +
Preference number: 6 (lower is better)
Translates to: IGLESPSWSSACSPV*LTAYLLRGLFVWDA
Trigger: CGCGTCCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGCCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000124640.8
ENSMUST00000137950.8
CDS CAA 90 bp CGGCGCTCCTCATGCTGCAGGACAGTAGCAATTCGGCGGGACAAGTaGTGTAGACAGTTTATCACTGATGGATCAGCATTGGCCAGGATC +
Preference number: 6 (lower is better)
Translates to: RRSSCCRTVAIRRDK*CRQFITDGSALARI
Trigger: GATCCTGGCCAATGCTGATCCATCAGTGATAAACTGTCTACACAACTTGTCCCGCCGAATTGCTACTGTCCTGCAGCATGAGGAGCGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000149526.2
CDS CCA 72 bp GCCAGAATAACATCCGAGAACCTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCAGTGTTGTTGACAGCA +
Preference number: 6 (lower is better)
Translates to: ARITSENLESPS*SSACSPVLLTA
Trigger: TGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGTTCTCGGATGTTATTCTGGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000136903.8
CDS TCA 72 bp CACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTTaGCAGCATATCTGCTCCGTGGTTTATTTGTCTGGG +
Preference number: 6 (lower is better)
Translates to: HRPGHQHVRQCC*QHICSVVYLSG
Trigger: CCCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS TCA 72 bp CACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTTaGCAGCATATCTGCTCCGTGGTTTATCAGGATCAC +
Preference number: 6 (lower is better)
Translates to: HRPGHQHVRQCC*QHICSVVYQDH
Trigger: GTGATCCTGATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS GCA 72 bp TTGGCCTGCCCCAGAGCATGCTGCAGCAGTGTTGGGTaGCCAACAAACCGTACATTATCAATCTTCAGTTCA +
Preference number: 6 (lower is better)
Translates to: LACPRACCSSVG*PTNRTLSIFSS
Trigger: TGAACTGAAGATTGATAATGTACGGTTTGTTGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109389.9
CDS GCA 72 bp GTTGCCAGAATAACATCCGAGAACCCTGCAACCAATTaGTCATCGGTTGGAGGACATGGCTTGCTGGAGTCA +
Preference number: 6 (lower is better)
Translates to: VARITSENPATN*SSVGGHGLLES
Trigger: TGACTCCAGCAAGCCATGTCCTCCAACCGATGAGCAATTGGTTGCAGGGTTCTCGGATGTTATTCTGGCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS CCA 72 bp AGATGGATCTGTTTTGGAGACCTGGAGTCACCGTCCTaGTCATCAGCATGTTCGCCAGTGTTGTTGACAGCA +
Preference number: 6 (lower is better)
Translates to: RWICFGDLESPS*SSACSPVLLTA
Trigger: TGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTCCAGGTCTCCAAAACAGATCCATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000141859.8
CDS CAA 72 bp TGTTGCCAGAATAACATCCGAGAACCCTGCAACCAATaGCTCATCGGTTGGAGGACATGGCTTGCTGGAGTC +
Preference number: 6 (lower is better)
Translates to: CCQNNIREPCNQ*LIGWRTWLAGV
Trigger: GACTCCAGCAAGCCATGTCCTCCAACCGATGAGCAATTGGTTGCAGGGTTCTCGGATGTTATTCTGGCAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS CAA 72 bp GAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTaGTTGACAGCATATCTGCTCCGTGGTTTATCAGGA +
Preference number: 6 (lower is better)
Translates to: ESPSWSSACSPV*LTAYLLRGLSG
Trigger: TCCTGATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS CCA 72 bp ATGTTCGCCAGTGTTGTTGACAGCATATCTGCTCCGTaGTTTATCAGGATCACGCTGATGGGGCTGGTATTG +
Preference number: 6 (lower is better)
Translates to: MFASVVDSISAP*FIRITLMGLVL
Trigger: CAATACCAGCCCCATCAGCGTGATCCTGATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS CAA 72 bp TCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTaGACAGCATATCTGCTCCGTGGTTTATTTGTCTGG +
Preference number: 6 (lower is better)
Translates to: SPSWSSACSPVL*TAYLLRGLFVW
Trigger: CCAGACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS CAA 72 bp GAGTCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTaGTTGACAGCATATCTGCTCCGTGGTTTATTTGTC +
Preference number: 6 (lower is better)
Translates to: ESPSWSSACSPV*LTAYLLRGLFV
Trigger: GACAAATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000124640.8
ENSMUST00000129010.2
ENSMUST00000137950.8
ENSMUST00000141859.8
CDS CAA 72 bp TCACCGTCCTGGTCATCAGCATGTTCGCCAGTGTTGTaGACAGCATATCTGCTCCGTGGTTTATCAGGATCA +
Preference number: 6 (lower is better)
Translates to: SPSWSSACSPVL*TAYLLRGLSGS
Trigger: TGATCCTGATAAACCACGGAGCAGATATGCTGTCAACAACACTGGCGAACATGCTGATGACCAGGACGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000136903.8
CDS CAA 90 bp ATGGATCTGTTTTGGAGACCTGCCCCAGAGCATGCTGCAGCAGTGTaGGGTGCCCAACAAACCGTACATTATCAATCTTCAGTTCAAATT +
Preference number: 6 (lower is better)
Translates to: MDLFWRPAPEHAAAV*GAQQTVHYQSSVQI
Trigger: AATTTGAACTGAAGATTGATAATGTACGGTTTGTTGGGCACCCAACACTGCTGCAGCATGCTCTGGGGCAGGTCTCCAAAACAGATCCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000129010.2
CDS CAA 90 bp ACATTATCAATCTTCAGTTCAAATTTTTGGCCGCACATTTCAGATTaGGTTGCCAAAATTGTTGCCAGAATAACATCCGAGAACCTGGAG +
Preference number: 6 (lower is better)
Translates to: TLSIFSSNFWPHISD*VAKIVARITSENLE
Trigger: CTCCAGGTTCTCGGATGTTATTCTGGCAACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAGATTGATAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
CDS CAA 90 bp ACATTATCAATCTTCAGTTCAAATTTTTGGCCGCACATTTCAGATTaGGTTGCCAAAATTGTTGCCAGAATAACATCCGAGAACCCTGCA +
Preference number: 6 (lower is better)
Translates to: TLSIFSSNFWPHISD*VAKIVARITSENPA
Trigger: TGCAGGGTTCTCGGATGTTATTCTGGCAACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAGATTGATAATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129010.2
CDS CAA 72 bp ATCTTCAGTTCAAATTTTTGGCCGCACATTTCAGATTaGGTTGCCAAAATTGTTGCCAGAATAACATCCGAG +
Preference number: 6 (lower is better)
Translates to: IFSSNFWPHISD*VAKIVARITSE
Trigger: CTCGGATGTTATTCTGGCAACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000129010.2
CDS CCA 72 bp ACAAACCGTACATTATCAATCTTCAGTTCAAATTTTTaGCCGCACATTTCAGATTTGGTTGCCAAAATTGTT +
Preference number: 6 (lower is better)
Translates to: TNRTLSIFSSNF*PHISDLVAKIV
Trigger: AACAATTTTGGCAACCAAATCTGAAATGTGCGGCCAAAAATTTGAACTGAAGATTGATAATGTACGGTTTGT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020530.12
ENSMUST00000109389.9
ENSMUST00000129010.2