RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NPPC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026241

Ensembl transcript IDs: ENSMUST00000027449.6

Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTCAGGGATGGCCTCAGTaGACAGAGCAGTTCCCAATC +
Preference number: 2 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSQGWPQ*TEQFPI
Trigger: GATTGGGAACTGCTCTGTGCACTGAGGCCATCCCTG...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR GCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGGAGGTGTTTCCAGATaGTGGAGGCTGATGACCAGG +
Preference number: 2 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSGGVSR*WRLMTR
Trigger: CCTGGTCATCAGCCTCCAGCATCTGGAAACACCTCC...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR CCA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATAGCTGATGACCAGGGATaGCCTCAGTGCACAGAGCAG +
Preference number: 2 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIADDQG*PQCTEQ
Trigger: CTGCTCTGTGCACTGAGGCCATCCCTGGTCATCAGC...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR CCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGGTGTTTCCAGATGCTaGAGGCTGATGACCAGGGAT +
Preference number: 2 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSGVSRC*RLMTRD
Trigger: ATCCCTGGTCATCAGCCTCCAGCATCTGGAAACACC...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR GCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGCTGGTGTTGTGTATTaGCAGTACCAGGAGGAAAAA +
Preference number: 2 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSAGVVY*QYQEEK
Trigger: TTTTTCCTCCTGGTACTGGCAATACACAACACCAGC...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR CCA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATAAAAGCCACATTGCGTTaGAGGTGTTTCCAGATGCTG +
Preference number: 2 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIKATLR*RCFQML
Trigger: CAGCATCTGGAAACACCTCCAACGCAATGTGGCTTT...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR CAA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATAAAAAGCCACATTGCGTaGGAGGTGTTTCCAGATGCT +
Preference number: 3 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIKSHIA*EVFPDA
Trigger: AGCATCTGGAAACACCTCCAACGCAATGTGGCTTTT...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR CAA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATAAGCTGGTGTTGTGTATaGCCAGTACCAGGAGGAAAA +
Preference number: 3 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYISWCCV*PVPGGK
Trigger: TTTTCCTCCTGGTACTGGCAATACACAACACCAGCT...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR CAA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTATAAAACAGCTGGTGTaGTGTATTGCCAGTACCAGG +
Preference number: 3 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSIKQLV*CIASTR
Trigger: CCTGGTACTGGCAATACACAACACCAGCTGTTTTAT...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
3UTR-3UTR CAA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATAAATGTAAAAGCCACATaGCGTTGGAGGTGTTTCCAG +
Preference number: 3 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYINVKAT*RWRCFQ
Trigger: CTGGAAACACCTCCAACGCAATGTGGCTTTTACATT...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR GCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTTTGCGCGCGTTGGGGTaGTCGTGCAGAAGGCGGGCC +
Preference number: 4 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSLRALG*SCRRRA
Trigger: GGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAA...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR GCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGCGTTGGGGTGCTCGTaGAGAAGGCGGGCCCAAGCA +
Preference number: 4 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSALGCS*RRRAQA
Trigger: TGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGC...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CCA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATAGTGGTGTCCCGGGCTTaGCTTCAGAGGGCCGGAGCG +
Preference number: 4 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIVVSRA*LQRAGA
Trigger: CGCTCCGGCCCTCTGAAGCCAAGCCCGGGACACCAC...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CCA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATACGCCAGCTCCTCCCCTaGCGGGGTTCTCGGGACCTT +
Preference number: 4 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIRQLLP*RGSRDL
Trigger: AAGGTCCCGAGAACCCCGCCAGGGGAGGAGCTGGCG...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTTCTCGGGACCTTCGGTaGTGTCCCGGGCTTGGCTTC +
Preference number: 4 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSSRDLR*CPGLGF
Trigger: GAAGCCAAGCCCGGGACACCACCGAAGGTCCCGAGA...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR TCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTCGATCCGGTCCAGCTTaGGGCCAAAGCAGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSRSGPA*GQSSLW
Trigger: CCAAAGGCTGCTTTGGCCTCAAGCTGGACCGGATCG...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR GCA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATATGCCGCCTTTGTATTTaGGCGCGTTGGGGTGCTCGT +
Preference number: 4 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYICRLCI*ARWGAR
Trigger: ACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCA...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGGCCAAAGCAGCCTTTaGACAAGCCCTTCTTGTTGC +
Preference number: 4 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSGQSSL*TSPSCC
Trigger: GCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGGCC...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR TCA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATATTGTCACCCTTTTTCTaGTTGCCACCAGCTGCCTGG +
Preference number: 4 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYILSPFF*LPPAAW
Trigger: CCAGGCAGCTGGTGGCAATCAGAAAAAGGGTGACAA...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR GCA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTACAAGCCCTTCTTGTTaGCGCCTTTGTATTTGCGCG +
Preference number: 4 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSTSPSC*RLCICA
Trigger: CGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGT...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 90 bp CCTCCCCTGGCGGGGTTCTCGGGACCTTCGGTGGTGTCCCGGGCTTaGCTTCAGAGGGCCGGAGCGAGAGTAGCGCGAGCAGCAGGGCGC +
Preference number: 5 (lower is better)
Translates to: PPLAGFSGPSVVSRA*LQRAGARVARAAGR
Trigger: GCGCCCTGCTGCTCGCGCTACTCTCGCTCCGGCCCTCTGAAGCCAAGCCCGGGACACCACCGAAGGTCCCGAGAACCCCGCCAGGGGAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 90 bp CGTTGGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGACTTaGTGTCCACACGCAGGTCCCGGAGCAGTCGCGATCGGTCTCCCT +
Preference number: 5 (lower is better)
Translates to: RWGARAEGGPKQPGT*CPHAGPGAVAIGLP
Trigger: AGGGAGACCGATCGCGACTGCTCCGGGACCTGCGTGTGGACACCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS GCA 90 bp CCCTTCTTGTTGCCGCCTTTGTATTTGCGCGCGTTGGGGTGCTCGTaGAGAAGGCGGGCCCAAGCAGCCCGGGACTTGGTGTCCACACGC +
Preference number: 5 (lower is better)
Translates to: PFLLPPLYLRALGCS*RRRAQAARDLVSTR
Trigger: GCGTGTGGACACCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS GCA 90 bp GACAAGCCCTTCTTGTTGCCGCCTTTGTATTTGCGCGCGTTGGGGTaGTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGACTTGGTGTCC +
Preference number: 5 (lower is better)
Translates to: DKPFLLPPLYLRALG*SCRRRAQAARDLVS
Trigger: GGACACCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 90 bp CTTTGGACAAGCCCTTCTTGTTGCCGCCTTTGTATTTGCGCGCGTTaGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGACTTGG +
Preference number: 5 (lower is better)
Translates to: LWTSPSCCRLCICAR*GARAEGGPKQPGTW
Trigger: CCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS TCA 90 bp TGGTGTCCACACGCAGGTCCCGGAGCAGTCGCGATCGGTCTCCCTTaGGATTGGCTCCCCCGCTGCCTGGAGTCTTGTCACCCTTTTTCT +
Preference number: 5 (lower is better)
Translates to: WCPHAGPGAVAIGLP*DWLPRCLESCHPFS
Trigger: AGAAAAAGGGTGACAAGACTCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCGATCGCGACTGCTCCGGGACCTGCGTGTGGACACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS GCA 90 bp CAAAGCAGCCTTTGGACAAGCCCTTCTTGTTGCCGCCTTTGTATTTaGGCGCGTTGGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: QSSLWTSPSCCRLCI*ARWGARAEGGPKQP
Trigger: GGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 90 bp GAGCAGTCGCGATCGGTCTCCCTTGAGATTGGCTCCCCCGCTGCCTaGAGTCTTGTCACCCTTTTTCTGATTGCCACCAGCTGCCTGGGA +
Preference number: 5 (lower is better)
Translates to: EQSRSVSLEIGSPAA*SLVTLFLIATSCLG
Trigger: TCCCAGGCAGCTGGTGGCAATCAGAAAAAGGGTGACAAGACTCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCGATCGCGACTGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATAGGTGGTGTCCCGGGCTaGGCTTCAGAGGGCCGGAGC +
Preference number: 5 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIGGVPG*ASEGRS
Trigger: GCTCCGGCCCTCTGAAGCCAAGCCCGGGACACCACC...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATACGGTCTCCCTTGAGATaGGCTCCCCCGCTGCCTGGA +
Preference number: 5 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIRSPLR*APPLPG
Trigger: TCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCG...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTTTGCCGCCTTTGTATTaGCGCGCGTTGGGGTGCTCG +
Preference number: 5 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSLPPLY*RALGCS
Trigger: CGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAA...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTCCGATCCGGTCCAGCTaGAGGCCAAAGCAGCCTTTG +
Preference number: 5 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSPIRSS*RPKQPL
Trigger: CAAAGGCTGCTTTGGCCTCAAGCTGGACCGGATCGG...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTTTGTATTTGCGCGCGTaGGGGTGCTCGTGCAGAAGG +
Preference number: 5 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSLYLRA*GCSCRR
Trigger: CCTTCTGCACGAGCACCCCAACGCGCGCAAATACAA...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp AAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGTGTGTCTCATGTATATATTCTTGTTGCCGCCTTaGTATTTGCGCGCGTTGGGG +
Preference number: 5 (lower is better)
Translates to: KNCPLSSSRCGSVCLMYIFLLPP*YLRALG
Trigger: CCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAA...TATATACATGAGACACACACTCCCACACCGACTTGATGACAAGGGACAGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTGACAAGCCCTTCTTGTaGCCGCCTTTGTATTTGCGC +
Preference number: 5 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSDKPFL*PPLYLR
Trigger: GCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTC...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTAGGCCAAAGCAGCCTTaGGACAAGCCCTTCTTGTTG +
Preference number: 5 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSRPKQP*DKPFLL
Trigger: CAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGGCCT...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS-3UTR CAA 90 bp GGTTTTGTCAGTCACTTTAAAAACTGTCCCTTGTCATCAAGTCGGTGTGGGAGTTTGGACAAGCCCTTCTaGTTGCCGCCTTTGTATTTG +
Preference number: 5 (lower is better)
Translates to: GFVSHFKNCPLSSSRCGSLDKPF*LPPLYL
Trigger: CAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAA...ACTCCCACACCGACTTGATGACAAGGGACAGTTTTTAAAGTGACTGACAAAACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 72 bp GCCACCAGCTGCCTGGGAATCCGCCAGCTCCTCCCCTaGCGGGGTTCTCGGGACCTTCGGTGGTGTCCCGGG +
Preference number: 6 (lower is better)
Translates to: ATSCLGIRQLLP*RGSRDLRWCPG
Trigger: CCCGGGACACCACCGAAGGTCCCGAGAACCCCGCCAGGGGAGGAGCTGGCGGATTCCCAGGCAGCTGGTGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp TCCTCCCCTGGCGGGGTTCTCGGGACCTTCGGTGGTGTCCCGGGCTaGGCTTCAGAGGGCCGGAGCGAGAGTAGCGCGAGCAGCAGGGCG +
Preference number: 6 (lower is better)
Translates to: SSPGGVLGTFGGVPG*ASEGRSESSASSRA
Trigger: CGCCCTGCTGCTCGCGCTACTCTCGCTCCGGCCCTCTGAAGCCAAGCCCGGGACACCACCGAAGGTCCCGAGAACCCCGCCAGGGGAGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 72 bp CAGCTCCTCCCCTGGCGGGGTTCTCGGGACCTTCGGTaGTGTCCCGGGCTTGGCTTCAGAGGGCCGGAGCGA +
Preference number: 6 (lower is better)
Translates to: QLLPWRGSRDLR*CPGLGFRGPER
Trigger: TCGCTCCGGCCCTCTGAAGCCAAGCCCGGGACACCACCGAAGGTCCCGAGAACCCCGCCAGGGGAGGAGCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp GGCGGGGTTCTCGGGACCTTCGGTGGTGTCCCGGGCTaGGCTTCAGAGGGCCGGAGCGAGAGTAGCGCGAGC +
Preference number: 6 (lower is better)
Translates to: GGVLGTFGGVPG*ASEGRSESSAS
Trigger: GCTCGCGCTACTCTCGCTCCGGCCCTCTGAAGCCAAGCCCGGGACACCACCGAAGGTCCCGAGAACCCCGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp GCGTTGGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGACTaGGTGTCCACACGCAGGTCCCGGAGCAGTCGCGATCGGTCTCCC +
Preference number: 6 (lower is better)
Translates to: ALGCSCRRRAQAARD*VSTRRSRSSRDRSP
Trigger: GGGAGACCGATCGCGACTGCTCCGGGACCTGCGTGTGGACACCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 72 bp GCGGGGTTCTCGGGACCTTCGGTGGTGTCCCGGGCTTaGCTTCAGAGGGCCGGAGCGAGAGTAGCGCGAGCA +
Preference number: 6 (lower is better)
Translates to: AGFSGPSVVSRA*LQRAGARVARA
Trigger: TGCTCGCGCTACTCTCGCTCCGGCCCTCTGAAGCCAAGCCCGGGACACCACCGAAGGTCCCGAGAACCCCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 72 bp GCTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGACTTaGTGTCCACACGCAGGTCCCGGAGCAGTCGCGATC +
Preference number: 6 (lower is better)
Translates to: ARAEGGPKQPGT*CPHAGPGAVAI
Trigger: GATCGCGACTGCTCCGGGACCTGCGTGTGGACACCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp TGCTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGACTaGGTGTCCACACGCAGGTCCCGGAGCAGTCGCGAT +
Preference number: 6 (lower is better)
Translates to: CSCRRRAQAARD*VSTRRSRSSRD
Trigger: ATCGCGACTGCTCCGGGACCTGCGTGTGGACACCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS TCA 72 bp CACGCAGGTCCCGGAGCAGTCGCGATCGGTCTCCCTTaGGATTGGCTCCCCCGCTGCCTGGAGTCTTGTCAC +
Preference number: 6 (lower is better)
Translates to: HAGPGAVAIGLP*DWLPRCLESCH
Trigger: GTGACAAGACTCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCGATCGCGACTGCTCCGGGACCTGCGTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS GCA 72 bp TTGCCGCCTTTGTATTTGCGCGCGTTGGGGTGCTCGTaGAGAAGGCGGGCCCAAGCAGCCCGGGACTTGGTG +
Preference number: 6 (lower is better)
Translates to: LPPLYLRALGCS*RRRAQAARDLV
Trigger: CACCAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS GCA 72 bp TTCTTGTTGCCGCCTTTGTATTTGCGCGCGTTGGGGTaGTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGAC +
Preference number: 6 (lower is better)
Translates to: FLLPPLYLRALG*SCRRRAQAARD
Trigger: GTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 72 bp AGCCCTTCTTGTTGCCGCCTTTGTATTTGCGCGCGTTaGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCCC +
Preference number: 6 (lower is better)
Translates to: SPSCCRLCICAR*GARAEGGPKQP
Trigger: GGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp ACACGCAGGTCCCGGAGCAGTCGCGATCGGTCTCCCTaGAGATTGGCTCCCCCGCTGCCTGGAGTCTTGTCA +
Preference number: 6 (lower is better)
Translates to: TRRSRSSRDRSP*RLAPPLPGVLS
Trigger: TGACAAGACTCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCGATCGCGACTGCTCCGGGACCTGCGTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp CCTTTGGACAAGCCCTTCTTGTTGCCGCCTTTGTATTTGCGCGCGTaGGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCCCGGGACTTG +
Preference number: 6 (lower is better)
Translates to: PLDKPFLLPPLYLRA*GCSCRRRAQAARDL
Trigger: CAAGTCCCGGGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp AGGTCCCGGAGCAGTCGCGATCGGTCTCCCTTGAGATaGGCTCCCCCGCTGCCTGGAGTCTTGTCACCCTTT +
Preference number: 6 (lower is better)
Translates to: RSRSSRDRSPLR*APPLPGVLSPF
Trigger: AAAGGGTGACAAGACTCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCGATCGCGACTGCTCCGGGACCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp AAGCCCTTCTTGTTGCCGCCTTTGTATTTGCGCGCGTaGGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCC +
Preference number: 6 (lower is better)
Translates to: KPFLLPPLYLRA*GCSCRRRAQAA
Trigger: GGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp TTGGTGTCCACACGCAGGTCCCGGAGCAGTCGCGATCGGTCTCCCTaGAGATTGGCTCCCCCGCTGCCTGGAGTCTTGTCACCCTTTTTC +
Preference number: 6 (lower is better)
Translates to: LVSTRRSRSSRDRSP*RLAPPLPGVLSPFF
Trigger: GAAAAAGGGTGACAAGACTCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCGATCGCGACTGCTCCGGGACCTGCGTGTGGACACCAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp CCAAAGCAGCCTTTGGACAAGCCCTTCTTGTTGCCGCCTTTGTATTaGCGCGCGTTGGGGTGCTCGTGCAGAAGGCGGGCCCAAGCAGCC +
Preference number: 6 (lower is better)
Translates to: PKQPLDKPFLLPPLY*RALGCSCRRRAQAA
Trigger: GGCTGCTTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS GCA 72 bp CTTTGGACAAGCCCTTCTTGTTGCCGCCTTTGTATTTaGGCGCGTTGGGGTGCTCGTGCAGAAGGCGGGCCC +
Preference number: 6 (lower is better)
Translates to: LWTSPSCCRLCI*ARWGARAEGGP
Trigger: GGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp CCTTTGGACAAGCCCTTCTTGTTGCCGCCTTTGTATTaGCGCGCGTTGGGGTGCTCGTGCAGAAGGCGGGCC +
Preference number: 6 (lower is better)
Translates to: PLDKPFLLPPLY*RALGCSCRRRA
Trigger: GGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp TTGAGGCCAAAGCAGCCTTTGGACAAGCCCTTCTTGTTGCCGCCTTaGTATTTGCGCGCGTTGGGGTGCTCGTGCAGAAGGCGGGCCCAA +
Preference number: 6 (lower is better)
Translates to: LRPKQPLDKPFLLPP*YLRALGCSCRRRAQ
Trigger: TTGGGCCCGCCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGGCCTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp CGGTCCAGCTTGAGGCCAAAGCAGCCTTTGGACAAGCCCTTCTTGTaGCCGCCTTTGTATTTGCGCGCGTTGGGGTGCTCGTGCAGAAGG +
Preference number: 6 (lower is better)
Translates to: RSSLRPKQPLDKPFL*PPLYLRALGCSCRR
Trigger: CCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGGCCTCAAGCTGGACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 90 bp ATCCGGTCCAGCTTGAGGCCAAAGCAGCCTTTGGACAAGCCCTTCTaGTTGCCGCCTTTGTATTTGCGCGCGTTGGGGTGCTCGTGCAGA +
Preference number: 6 (lower is better)
Translates to: IRSSLRPKQPLDKPF*LPPLYLRALGCSCR
Trigger: TCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGGCCTCAAGCTGGACCGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CCA 72 bp CGATCGGTCTCCCTTGAGATTGGCTCCCCCGCTGCCTaGAGTCTTGTCACCCTTTTTCTGATTGCCACCAGC +
Preference number: 6 (lower is better)
Translates to: RSVSLEIGSPAA*SLVTLFLIATS
Trigger: GCTGGTGGCAATCAGAAAAAGGGTGACAAGACTCCAGGCAGCGGGGGAGCCAATCTCAAGGGAGACCGATCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp AAGCAGCCTTTGGACAAGCCCTTCTTGTTGCCGCCTTaGTATTTGCGCGCGTTGGGGTGCTCGTGCAGAAGG +
Preference number: 6 (lower is better)
Translates to: KQPLDKPFLLPP*YLRALGCSCRR
Trigger: CCTTCTGCACGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp TTGAGGCCAAAGCAGCCTTTGGACAAGCCCTTCTTGTaGCCGCCTTTGTATTTGCGCGCGTTGGGGTGCTCG +
Preference number: 6 (lower is better)
Translates to: LRPKQPLDKPFL*PPLYLRALGCS
Trigger: CGAGCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGGCCTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6
CDS CAA 72 bp AGCTTGAGGCCAAAGCAGCCTTTGGACAAGCCCTTCTaGTTGCCGCCTTTGTATTTGCGCGCGTTGGGGTGC +
Preference number: 6 (lower is better)
Translates to: SLRPKQPLDKPF*LPPLYLRALGC
Trigger: GCACCCCAACGCGCGCAAATACAAAGGCGGCAACAAGAAGGGCTTGTCCAAAGGCTGCTTTGGCCTCAAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027449.6