Pregenerated sensors for NPPB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029019Ensembl transcript IDs: ENSMUST00000103231.5
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTGCAGCCAGGGTCACCTTGGAATTTTaGGGTCTCTGCTGGACCCGG | + |
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Preference number: 4 (lower is better) Translates to: SWGKRPRQSQKLESPAARVTLEF*GLCWTR Trigger: CCGGGTCCAGCAGAGACCTCAAAATTCCAAGGTGAC...CCTGGCTGCAGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR TCA 90 bp | GGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTGCAGCCAGGAGGTCGTGACCTCCCAGCGGTaGCAGATAAAGGAAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GKETQAESETGVSCSQEVVTSQR*QIKEKQ Trigger: CTGCTTTTCCTTTATCTGTCACCGCTGGGAGGTCAC...GACCTCCTGGCTGCAGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR TCA 90 bp | TCCCAGAGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTGCAGCAGCTTCTGCATCTTaGATTGCTCTGGAGACTGGC | + |
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Preference number: 4 (lower is better) Translates to: SQSWGKRPRQSQKLESPAAASAS*IALETG Trigger: GCCAGTCTCCAGAGCAATTCAAGATGCAGAAGCTGC...TGCAGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCTCTGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CCA 90 bp | GCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTGCAGCCAGGACCGAAGGACTCTTTTTaGGTGTTCTTTTGTGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: AGERDPGRVRNWSLLQPGPKDSF*VFFCEA Trigger: GGCCTCACAAAAGAACACCCAAAAAGAGTCCTTCGG...TCCTGGCTGCAGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CCA 90 bp | AAGGTGGTCCCAGAGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCCATCTTGAATTGCTCTaGAGACTGGCTAGGACTTCC | + |
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Preference number: 4 (lower is better) Translates to: KVVPELGKETQAESETGVHLELL*RLARTS Trigger: GGAAGTCCTAGCCAGTCTCCAGAGCAATTCAAGATG...GACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCTCTGGGACCACCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CCA 90 bp | AAGGTGGTCCCAGAGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTTCAAGAGCTGTCTCTaGGCCATTTCCTCCGACTTT | + |
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Preference number: 4 (lower is better) Translates to: KVVPELGKETQAESETGVFKSCL*AISSDF Trigger: AAAGTCGGAGGAAATGGCCCAGAGACAGCTCTTGAA...GACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCTCTGGGACCACCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR GCA 90 bp | AAGGTGGTCCCAGAGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCATCCGGTCTATCTTGTaGCCAAAGCAGCTTGAGATA | + |
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Preference number: 4 (lower is better) Translates to: KVVPELGKETQAESETGVIRSIL*PKQLEI Trigger: TATCTCAAGCTGCTTTGGGCACAAGATAGACCGGAT...GACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCTCTGGGACCACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CCA 90 bp | AGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTGCAGCCAGGAGATATGTGTCACCTTaGAATTTTGAGGTCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: SWGKRPRQSQKLESPAARRYVSP*NFEVSA Trigger: AGCAGAGACCTCAAAATTCCAAGGTGACACATATCT...CCTGGCTGCAGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CAA 90 bp | AAGGTGGTCCCAGAGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCCCGGAGGGTGCTGCCTaGAGACCGAAGGACTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: KVVPELGKETQAESETGVPEGAA*RPKDSF Trigger: AAAAGAGTCCTTCGGTCTCAAGGCAGCACCCTCCGG...GACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCTCTGGGACCACCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CAA 90 bp | AGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTGCAGCCAGGCCGATCCGGTCTATCTaGTGCCCAAAGCAGCTTGAG | + |
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Preference number: 5 (lower is better) Translates to: SWGKRPRQSQKLESPAARPIRSI*CPKQLE Trigger: CTCAAGCTGCTTTGGGCACAAGATAGACCGGATCGG...CCTGGCTGCAGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CAA 90 bp | AGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTGCAGCCAGGTGTCACCTTGGAATTTaGAGGTCTCTGCTGGACCCG | + |
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Preference number: 5 (lower is better) Translates to: SWGKRPRQSQKLESPAARCHLGI*RSLLDP Trigger: CGGGTCCAGCAGAGACCTCAAAATTCCAAGGTGACA...CCTGGCTGCAGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS TCA 90 bp | GGGTGCTGCCTTGAGACCGAAGGACTCTTTTTGGGTGTTCTTTTGTaGGGCCTTGGTCCTTCAAGAGCTGTCTCTGGGCCATTTCCTCCG | + |
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Preference number: 5 (lower is better) Translates to: GCCLETEGLFLGVLL*GLGPSRAVSGPFPP Trigger: CGGAGGAAATGGCCCAGAGACAGCTCTTGAAGGACCAAGGCCTCACAAAAGAACACCCAAAAAGAGTCCTTCGGTCTCAAGGCAGCACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CAA 90 bp | AGGTGGTCCCAGAGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCTTCTGCATCTTGAATaGCTCTGGAGACTGGCTAGG | + |
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Preference number: 5 (lower is better) Translates to: RWSQSWGKRPRQSQKLESLLHLE*LWRLAR Trigger: CCTAGCCAGTCTCCAGAGCAATTCAAGATGCAGAAG...AGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCTCTGGGACCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS-3UTR CAA 90 bp | TGGTCCCAGAGCTGGGGAAAGAGACCCAGGCAGAGTCAGAAACTGGAGTCTCCTAGCAGCTTCTGCATCTaGAATTGCTCTGGAGACTGG | + |
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Preference number: 5 (lower is better) Translates to: WSQSWGKRPRQSQKLESPSSFCI*NCSGDW Trigger: CCAGTCTCCAGAGCAATTCAAGATGCAGAAGCTGCT...AGGAGACTCCAGTTTCTGACTCTGCCTGGGTCTCTTTCCCCAGCTCTGGGACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS TCA 90 bp | ACGACTGACGGATCCGATCCGGTCTATCTTGTGCCCAAAGCAGCTTaGGATATGTGTCACCTTGGAATTTTGAGGTCTCTGCTGGACCCG | + |
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Preference number: 5 (lower is better) Translates to: TTDGSDPVYLVPKAA*DMCHLGILRSLLDP Trigger: CGGGTCCAGCAGAGACCTCAAAATTCCAAGGTGACACATATCTCAAGCTGCTTTGGGCACAAGATAGACCGGATCGGATCCGTCAGTCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS TCA 90 bp | AGACTGGCTAGGACTTCCCAGAGGATAGGAGTGACCTCCCAGCGGTaGCAGATAAAGGAAAAGCAGAAACAGAATCATCTGGGACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: RLARTSQRIGVTSQR*QIKEKQKQNHLGQH Trigger: GTGCTGTCCCAGATGATTCTGTTTCTGCTTTTCCTTTATCTGTCACCGCTGGGAGGTCACTCCTATCCTCTGGGAAGTCCTAGCCAGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CCA 90 bp | CTTTTCTCTTATCAGCTCCAGCAGCTTCTGCATCTTGAATTGCTCTaGAGACTGGCTAGGACTTCCCAGAGGATAGGAGTGACCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: LFSYQLQQLLHLELL*RLARTSQRIGVTSQ Trigger: CTGGGAGGTCACTCCTATCCTCTGGGAAGTCCTAGCCAGTCTCCAGAGCAATTCAAGATGCAGAAGCTGCTGGAGCTGATAAGAGAAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS GCA 72 bp | CCTTGGAATTTTGAGGTCTCTGCTGGACCCGGAGGGTaGTGCCTTGAGACCGAAGGACTCTTTTTGGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: PWNFEVSAGPGG*CLETEGLFLGV Trigger: AACACCCAAAAAGAGTCCTTCGGTCTCAAGGCAGCACCCTCCGGGTCCAGCAGAGACCTCAAAATTCCAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CCA 72 bp | CCGGAGGGTGCTGCCTTGAGACCGAAGGACTCTTTTTaGGTGTTCTTTTGTGAGGCCTTGGTCCTTCAAGAG | + |
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Preference number: 6 (lower is better) Translates to: PEGAALRPKDSF*VFFCEALVLQE Trigger: CTCTTGAAGGACCAAGGCCTCACAAAAGAACACCCAAAAAGAGTCCTTCGGTCTCAAGGCAGCACCCTCCGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS GCA 72 bp | TGGAATTTTGAGGTCTCTGCTGGACCCGGAGGGTGCTaGCTTGAGACCGAAGGACTCTTTTTGGGTGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: WNFEVSAGPGGC*LETEGLFLGVL Trigger: AAGAACACCCAAAAAGAGTCCTTCGGTCTCAAGGCAGCACCCTCCGGGTCCAGCAGAGACCTCAAAATTCCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CCA 72 bp | TCTTGTGCCCAAAGCAGCTTGAGATATGTGTCACCTTaGAATTTTGAGGTCTCTGCTGGACCCGGAGGGTGC | + |
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Preference number: 6 (lower is better) Translates to: SCAQSSLRYVSP*NFEVSAGPGGC Trigger: GCACCCTCCGGGTCCAGCAGAGACCTCAAAATTCCAAGGTGACACATATCTCAAGCTGCTTTGGGCACAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CAA 72 bp | CAGCCCAAACGACTGACGGATCCGATCCGGTCTATCTaGTGCCCAAAGCAGCTTGAGATATGTGTCACCTTG | + |
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Preference number: 6 (lower is better) Translates to: QPKRLTDPIRSI*CPKQLEICVTL Trigger: CAAGGTGACACATATCTCAAGCTGCTTTGGGCACAAGATAGACCGGATCGGATCCGTCAGTCGTTTGGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS TCA 72 bp | CTTGAGACCGAAGGACTCTTTTTGGGTGTTCTTTTGTaGGGCCTTGGTCCTTCAAGAGCTGTCTCTGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LETEGLFLGVLL*GLGPSRAVSGP Trigger: TGGCCCAGAGACAGCTCTTGAAGGACCAAGGCCTCACAAAAGAACACCCAAAAAGAGTCCTTCGGTCTCAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS GCA 72 bp | CCCAAACGACTGACGGATCCGATCCGGTCTATCTTGTaGCCAAAGCAGCTTGAGATATGTGTCACCTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: PKRLTDPIRSIL*PKQLEICVTLE Trigger: TTCCAAGGTGACACATATCTCAAGCTGCTTTGGGCACAAGATAGACCGGATCGGATCCGTCAGTCGTTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CCA 72 bp | TATCAGCTCCAGCAGCTTCTGCATCTTGAATTGCTCTaGAGACTGGCTAGGACTTCCCAGAGGATAGGAGTG | + |
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Preference number: 6 (lower is better) Translates to: YQLQQLLHLELL*RLARTSQRIGV Trigger: CACTCCTATCCTCTGGGAAGTCCTAGCCAGTCTCCAGAGCAATTCAAGATGCAGAAGCTGCTGGAGCTGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CAA 72 bp | CCGAAGGACTCTTTTTGGGTGTTCTTTTGTGAGGCCTaGGTCCTTCAAGAGCTGTCTCTGGGCCATTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: PKDSFWVFFCEA*VLQELSLGHFL Trigger: GAGGAAATGGCCCAGAGACAGCTCTTGAAGGACCAAGGCCTCACAAAAGAACACCCAAAAAGAGTCCTTCGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CCA 72 bp | TCTTTTGTGAGGCCTTGGTCCTTCAAGAGCTGTCTCTaGGCCATTTCCTCCGACTTTTCTCTTATCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SFVRPWSFKSCL*AISSDFSLISS Trigger: GGAGCTGATAAGAGAAAAGTCGGAGGAAATGGCCCAGAGACAGCTCTTGAAGGACCAAGGCCTCACAAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS GCA 72 bp | TCCTCCGACTTTTCTCTTATCAGCTCCAGCAGCTTCTaGATCTTGAATTGCTCTGGAGACTGGCTAGGACTT | + |
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Preference number: 6 (lower is better) Translates to: SSDFSLISSSSF*ILNCSGDWLGL Trigger: AAGTCCTAGCCAGTCTCCAGAGCAATTCAAGATGCAGAAGCTGCTGGAGCTGATAAGAGAAAAGTCGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CAA 72 bp | TTCTCTTATCAGCTCCAGCAGCTTCTGCATCTTGAATaGCTCTGGAGACTGGCTAGGACTTCCCAGAGGATA | + |
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Preference number: 6 (lower is better) Translates to: FSYQLQQLLHLE*LWRLARTSQRI Trigger: TATCCTCTGGGAAGTCCTAGCCAGTCTCCAGAGCAATTCAAGATGCAGAAGCTGCTGGAGCTGATAAGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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| CDS CAA 72 bp | CGGATCCGATCCGGTCTATCTTGTGCCCAAAGCAGCTaGAGATATGTGTCACCTTGGAATTTTGAGGTCTCT | + |
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Preference number: 6 (lower is better) Translates to: RIRSGLSCAQSS*RYVSPWNFEVS Trigger: AGAGACCTCAAAATTCCAAGGTGACACATATCTCAAGCTGCTTTGGGCACAAGATAGACCGGATCGGATCCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103231.5 |
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