Pregenerated sensors for NPPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041616Ensembl transcript IDs: ENSMUST00000103230.5
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GACCACTCATCTACATTTAACATCGATCGTGATAGATaGAGGCAGGAAGCCGCAGCTCCAGGAGGGTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: DHSSTFNIDRDR*RQEAAAPGGCS Trigger: TGAACACCCTCCTGGAGCTGCGGCTTCCTGCCTTCATCTATCACGATCGATGTTAAATGTAGATGAGTGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR TCA 90 bp | GTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCACGGGCCTGCGGGGGCATaGCCTCATCTTCTACCGGCA | + |
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Preference number: 4 (lower is better) Translates to: VRIYLNMQSGRGKTPLDHGPAGA*PHLLPA Trigger: TGCCGGTAGAAGATGAGGTCATGCCCCCGCAGGCCC...GTGGTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR TCA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCTCTCAGAGGTGGGTTaGCCTCCCCAGTCCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDLSEVG*PPQSRE Trigger: CTCCCTGGACTGGGGAGGTCAACCCACCTCTGAGAG...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR GCA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCCTGCTTCCTCAGTCTaGTCACTCAGGGCCTGCGGG | + |
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Preference number: 4 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDPASSV*SLRACG Trigger: CCCGCAGGCCCTGAGTGAGCAGACTGAGGAAGCAGG...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR GCA 90 bp | GTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCACGGGGAGGGAGCTAAGTaGGGCCCCTGCTTCCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: VRIYLNMQSGRGKTPLDHGEGAK*GPCFLS Trigger: ACTGAGGAAGCAGGGGCCGCACTTAGCTCCCTCCCC...GTGGTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CCA 90 bp | ATCGTGATAGATGAAGGCAGGAAGCCGCAGCTCCAGGAGGGTGTTCACCACGCCCCATCAGATCTGTGTTaGACACCGCACTGTACACAG | + |
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Preference number: 4 (lower is better) Translates to: IVIDEGRKPQLQEGVHHAPSDLC*TPHCTQ Trigger: CTGTGTACAGTGCGGTGTCCAACACAGATCTGATGG...GGCGTGGTGAACACCCTCCTGGAGCTGCGGCTTCCTGCCTTCATCTATCACGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR GCA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACGGTACCGGAAGCTGTTaGAGCCTAGTCCACTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDGTGSC*SLVHSG Trigger: CCCAGAGTGGACTAGGCTGCAACAGCTTCCGGTACC...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CCA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACTACCCCCGAAGCAGCTaGATCTTCGTAGGCTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDYPRSS*IFVGSE Trigger: CTCGGAGCCTACGAAGATCCAGCTGCTTCGGGGGTA...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CCA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCAGCCTAGTCCACTCTaGGCTCCAATCCTGTCAATC | + |
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Preference number: 4 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDQPSPL*APILSI Trigger: GATTGACAGGATTGGAGCCCAGAGTGGACTAGGCTG...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR GCA 90 bp | GTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCACGCAGAGCCCTCAGTTTaGTTTTCAAGAGGGCAGATC | + |
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Preference number: 4 (lower is better) Translates to: VRIYLNMQSGRGKTPLDHAEPSV*FSRGQI Trigger: GATCTGCCCTCTTGAAAAGCAAACTGAGGGCTCTGC...GTGGTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CCA 90 bp | GTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCACGGATTTGCTCCAATATaGCCTGGAAGCCAAAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: VRIYLNMQSGRGKTPLDHGFAPI*PGSQKA Trigger: GGCCTTTTGGCTTCCAGGCCATATTGGAGCAAATCC...GTGGTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR TCA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACGGTCTAGCAGGTTCTTaGAATCCATCAGATCTGTGT | + |
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Preference number: 4 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDGLAGS*NPSDLC Trigger: ACACAGATCTGATGGATTTCAAGAACCTGCTAGACC...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CCA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACATCTTCTCCTCCAGGTaGTCTAGCAGGTTCTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDIFSSR*SSRFLK Trigger: TTTCAAGAACCTGCTAGACCACCTGGAGGAGAAGAT...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS TCA 90 bp | CGGCCCCTGCTTCCTCAGTCTGCTCACTCAGGGCCTGCGGGGGCATaGCCTCATCTTCTACCGGCATCTTCTCCTCCAGGTGGTCTAGCA | + |
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Preference number: 5 (lower is better) Translates to: RPLLPQSAHSGPAGA*PHLLPASSPPGGLA Trigger: TGCTAGACCACCTGGAGGAGAAGATGCCGGTAGAAGATGAGGTCATGCCCCCGCAGGCCCTGAGTGAGCAGACTGAGGAAGCAGGGGCCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CCA 90 bp | GTCCACTCTGGGCTCCAATCCTGTCAATCCTACCCCCGAAGCAGCTaGATCTTCGTAGGCTCCGAGGGCCAGCGAGCAGAGCCCTCAGTT | + |
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Preference number: 5 (lower is better) Translates to: VHSGLQSCQSYPRSS*IFVGSEGQRAEPSV Trigger: AACTGAGGGCTCTGCTCGCTGGCCCTCGGAGCCTACGAAGATCCAGCTGCTTCGGGGGTAGGATTGACAGGATTGGAGCCCAGAGTGGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CAA 90 bp | ATCGTGATAGATGAAGGCAGGAAGCCGCAGCTCCAGGAGGGTGTTCACCACGCCAGCAGAGCCCTCAGTTaGCTTTTCAAGAGGGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: IVIDEGRKPQLQEGVHHASRALS*LFKRAD Trigger: ATCTGCCCTCTTGAAAAGCAAACTGAGGGCTCTGCT...GGCGTGGTGAACACCCTCCTGGAGCTGCGGCTTCCTGCCTTCATCTATCACGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CAA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACCGGTACCGGAAGCTGTaGCAGCCTAGTCCACTCTGG | + |
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Preference number: 5 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDRYRKL*QPSPLW Trigger: CCAGAGTGGACTAGGCTGCAACAGCTTCCGGTACCG...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS GCA 90 bp | GAAATCCATCAGATCTGTGTTGGACACCGCACTGTACACAGGATTTaGTCCAATATGGCCTGGAAGCCAAAAGGCCAAGACGAGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: EIHQICVGHRTVHRI*SNMAWKPKGQDEEE Trigger: TTCTTCCTCGTCTTGGCCTTTTGGCTTCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTGTCCAACACAGATCTGATGGATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS-3UTR CAA 90 bp | AGGGTGAGGATCTACCTTAATATGCAGAGTGGGAGAGGCAAGACCCCACTAGACTGGTCTAGCAGGTTCTaGAAATCCATCAGATCTGTG | + |
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Preference number: 5 (lower is better) Translates to: RVRIYLNMQSGRGKTPLDWSSRF*KSIRSV Trigger: CACAGATCTGATGGATTTCAAGAACCTGCTAGACCA...GTCTAGTGGGGTCTTGCCTCTCCCACTCTGCATATTAAGGTAGATCCTCACCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS GCA 72 bp | GGGAGGCACCTCGGGGAGGGAGCTAAGTGCGGCCCCTaGTTCCTCAGTCTGCTCACTCAGGGCCTGCGGGGG | + |
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Preference number: 6 (lower is better) Translates to: GRHLGEGAKCGP*FLSLLTQGLRG Trigger: CCCCCGCAGGCCCTGAGTGAGCAGACTGAGGAAGCAGGGGCCGCACTTAGCTCCCTCCCCGAGGTGCCTCCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS TCA 72 bp | TGCGCCCTAGAGCACTGCCGTCTCTCAGAGGTGGGTTaGCCTCCCCAGTCCAGGGAGGCACCTCGGGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: CALEHCRLSEVG*PPQSREAPRGG Trigger: CCCTCCCCGAGGTGCCTCCCTGGACTGGGGAGGTCAACCCACCTCTGAGAGACGGCAGTGCTCTAGGGCGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS GCA 72 bp | GGGAGGGAGCTAAGTGCGGCCCCTGCTTCCTCAGTCTaGTCACTCAGGGCCTGCGGGGGCATGACCTCATCT | + |
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Preference number: 6 (lower is better) Translates to: GRELSAAPASSV*SLRACGGMTSS Trigger: AGATGAGGTCATGCCCCCGCAGGCCCTGAGTGAGCAGACTGAGGAAGCAGGGGCCGCACTTAGCTCCCTCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CCA 72 bp | GGGCTCCAATCCTGTCAATCCTACCCCCGAAGCAGCTaGATCTTCGTAGGCTCCGAGGGCCAGCGAGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: GLQSCQSYPRSS*IFVGSEGQRAE Trigger: CTCTGCTCGCTGGCCCTCGGAGCCTACGAAGATCCAGCTGCTTCGGGGGTAGGATTGACAGGATTGGAGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS GCA 72 bp | GTAGGCTCCGAGGGCCAGCGAGCAGAGCCCTCAGTTTaGTTTTCAAGAGGGCAGATCTATCGGAGGGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VGSEGQRAEPSV*FSRGQIYRRGP Trigger: GGGACCCCTCCGATAGATCTGCCCTCTTGAAAAGCAAACTGAGGGCTCTGCTCGCTGGCCCTCGGAGCCTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CAA 72 bp | CGTAGGCTCCGAGGGCCAGCGAGCAGAGCCCTCAGTTaGCTTTTCAAGAGGGCAGATCTATCGGAGGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: RRLRGPASRALS*LFKRADLSEGS Trigger: GGACCCCTCCGATAGATCTGCCCTCTTGAAAAGCAAACTGAGGGCTCTGCTCGCTGGCCCTCGGAGCCTACG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CCA 72 bp | CTTCGGTACCGGAAGCTGTTGCAGCCTAGTCCACTCTaGGCTCCAATCCTGTCAATCCTACCCCCGAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LRYRKLLQPSPL*APILSILPPKQ Trigger: CTGCTTCGGGGGTAGGATTGACAGGATTGGAGCCCAGAGTGGACTAGGCTGCAACAGCTTCCGGTACCGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CCA 72 bp | CACCGCACTGTACACAGGATTTGCTCCAATATGGCCTaGAAGCCAAAAGGCCAAGACGAGGAAGAAGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: HRTVHRICSNMA*KPKGQDEEEAQ Trigger: CTGGGCTTCTTCCTCGTCTTGGCCTTTTGGCTTCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS TCA 72 bp | CCGGCATCTTCTCCTCCAGGTGGTCTAGCAGGTTCTTaGAATCCATCAGATCTGTGTTGGACACCGCACTGT | + |
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Preference number: 6 (lower is better) Translates to: PASSPPGGLAGS*NPSDLCWTPHC Trigger: ACAGTGCGGTGTCCAACACAGATCTGATGGATTTCAAGAACCTGCTAGACCACCTGGAGGAGAAGATGCCGG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS GCA 72 bp | CAGATCTGTGTTGGACACCGCACTGTACACAGGATTTaGTCCAATATGGCCTGGAAGCCAAAAGGCCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: QICVGHRTVHRI*SNMAWKPKGQD Trigger: GTCTTGGCCTTTTGGCTTCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTGTCCAACACAGATCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CCA 72 bp | TTGGACACCGCACTGTACACAGGATTTGCTCCAATATaGCCTGGAAGCCAAAAGGCCAAGACGAGGAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: LDTALYTGFAPI*PGSQKAKTRKK Trigger: CTTCTTCCTCGTCTTGGCCTTTTGGCTTCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTGTCCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CAA 90 bp | TCCTCCAGGTGGTCTAGCAGGTTCTTGAAATCCATCAGATCTGTGTaGGACACCGCACTGTACACAGGATTTGCTCCAATATGGCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SSRWSSRFLKSIRSV*DTALYTGFAPIWPG Trigger: TCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTGTCCAACACAGATCTGATGGATTTCAAGAACCTGCTAGACCACCTGGAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CAA 90 bp | TCATCTTCTACCGGCATCTTCTCCTCCAGGTGGTCTAGCAGGTTCTaGAAATCCATCAGATCTGTGTTGGACACCGCACTGTACACAGGA | + |
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Preference number: 6 (lower is better) Translates to: SSSTGIFSSRWSSRF*KSIRSVLDTALYTG Trigger: TCCTGTGTACAGTGCGGTGTCCAACACAGATCTGATGGATTTCAAGAACCTGCTAGACCACCTGGAGGAGAAGATGCCGGTAGAAGATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CAA 72 bp | TCAGATCTGTGTTGGACACCGCACTGTACACAGGATTaGCTCCAATATGGCCTGGAAGCCAAAAGGCCAAGA | + |
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Preference number: 6 (lower is better) Translates to: SDLCWTPHCTQD*LQYGLEAKRPR Trigger: TCTTGGCCTTTTGGCTTCCAGGCCATATTGGAGCAAATCCTGTGTACAGTGCGGTGTCCAACACAGATCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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| CDS CAA 72 bp | TGGTCTAGCAGGTTCTTGAAATCCATCAGATCTGTGTaGGACACCGCACTGTACACAGGATTTGCTCCAATA | + |
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Preference number: 6 (lower is better) Translates to: WSSRFLKSIRSV*DTALYTGFAPI Trigger: TATTGGAGCAAATCCTGTGTACAGTGCGGTGTCCAACACAGATCTGATGGATTTCAAGAACCTGCTAGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103230.5 |
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