Pregenerated sensors for NPM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047911Ensembl transcript IDs: ENSMUST00000062629.5, ENSMUST00000228473.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAGGGTTACAGCCACACCACCTTATTACATTCAGACTAGGGTGGTaGGGCTGGACACCTGCACCAGAGCACAGCTGCTGGACATCCTGC | + |
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Preference number: 1 (lower is better) Translates to: TGLQPHHLITFRLGW*GWTPAPEHSCWTSC Trigger: GCAGGATGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTGTGGCTGTAACCCTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR CCA 90 bp | GTTACAGGGTTACAGCCACACCACCTTATTACATTCAGACTAGGGTaGTGGGGCTGGACACCTGCACCAGAGCACAGCTGCTGGACATCC | + |
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Preference number: 1 (lower is better) Translates to: VTGLQPHHLITFRLG*WGWTPAPEHSCWTS Trigger: GGATGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTGTGGCTGTAACCCTGTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR-3UTR CCA 90 bp | GTGGCCCTAGGCGAGCTTGCTGGGGGCTCTTCACCAAGAGCCTCCGGAAACTGGTTCAGACTAGGGTGGTaGGGCTGGACACCTGCACCA | + |
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Preference number: 2 (lower is better) Translates to: VALGELAGGSSPRASGNWFRLGW*GWTPAP Trigger: TGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAA...CCAGTTTCCGGAGGCTCTTGGTGAAGAGCCCCCAGCAAGCTCGCCTAGGGCCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR-3UTR CCA 90 bp | CACCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCTGGACATCCTGCCTTaGACGCAGAAGATGCTAAGA | + |
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Preference number: 2 (lower is better) Translates to: HHLITFRLGWWGWTPAPELDILP*TQKMLR Trigger: TCTTAGCATCTTCTGCGTCCAAGGCAGGATGTCCAG...CTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR CCA 72 bp | CTTGCTGGGGGCTCTTCACCAAGAGCCTCCGGAAACTaGAGGGCTGGGTTACAGGGTTACAGCCACACCACC | + |
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Preference number: 3 (lower is better) Translates to: LAGGSSPRASGN*RAGLQGYSHTT Trigger: GGTGGTGTGGCTGTAACCCTGTAACCCAGCCCTCCAGTTTCCGGAGGCTCTTGGTGAAGAGCCCCCAGCAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR CCA 72 bp | CACCACCTTATTACATTCAGACTAGGGTGGTGGGGCTaGACACCTGCACCAGAGCACAGCTGCTGGACATCC | + |
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Preference number: 3 (lower is better) Translates to: HHLITFRLGWWG*TPAPEHSCWTS Trigger: GGATGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR CCA 72 bp | TTACAGCCACACCACCTTATTACATTCAGACTAGGGTaGTGGGGCTGGACACCTGCACCAGAGCACAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: LQPHHLITFRLG*WGWTPAPEHSC Trigger: GCAGCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTGTGGCTGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR CCA 72 bp | GGGCTCTTCACCAAGAGCCTCCGGAAACTGGAGGGCTaGGTTACAGGGTTACAGCCACACCACCTTATTACA | + |
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Preference number: 3 (lower is better) Translates to: GLFTKSLRKLEG*VTGLQPHHLIT Trigger: TGTAATAAGGTGGTGTGGCTGTAACCCTGTAACCCAGCCCTCCAGTTTCCGGAGGCTCTTGGTGAAGAGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| 3UTR CCA 72 bp | TCATGCAAATTTTATTGTGGCCCTAGGCGAGCTTGCTaGGGGCTCTTCACCAAGAGCCTCCGGAAACTGGAG | + |
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Preference number: 3 (lower is better) Translates to: SCKFYCGPRRAC*GLFTKSLRKLE Trigger: CTCCAGTTTCCGGAGGCTCTTGGTGAAGAGCCCCCAGCAAGCTCGCCTAGGGCCACAATAAAATTTGCATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR TCA 90 bp | TGGACACCTGCACCAGAGCACAGCTGCTGGACATCCTGCCTTGGACGCAGAAGACAGGGACTCTTGTCCTaGGGGCTGGGCCTCACTACT | + |
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Preference number: 4 (lower is better) Translates to: WTPAPEHSCWTSCLGRRRQGLLS*GLGLTT Trigger: AGTAGTGAGGCCCAGCCCTCAGGACAAGAGTCCCTG...TCTTCTGCGTCCAAGGCAGGATGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR GCA 90 bp | ACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCACAGCTGCTGGTGGTTTCGGTCACGCTaGTGGTGCTGTGGCGACTCA | + |
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Preference number: 4 (lower is better) Translates to: TFRLGWWGWTPAPEHSCWWFRSR*WCCGDS Trigger: TGAGTCGCCACAGCACCAGCAGCGTGACCGAAACCA...CCAGCAGCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CCA 90 bp | ACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCACAGCTGCTGGGGTTTTCTGCCTTCCTaGGAGAGGACTTCCACACGG | + |
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Preference number: 4 (lower is better) Translates to: TFRLGWWGWTPAPEHSCWGFLPS*ERTSTR Trigger: CCGTGTGGAAGTCCTCTCCCAGGAAGGCAGAAAACC...CCAGCAGCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR GCA 90 bp | TGTGGCCCTAGGCGAGCTTGCTGGGGGCTCTTCACCAAGAGCCTCCGGAAACTGTTTGCTATGCTCATCTaGTTCTGGGGAGCCACCCTT | + |
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Preference number: 4 (lower is better) Translates to: CGPRRACWGLFTKSLRKLFAMLI*FWGATL Trigger: AAGGGTGGCTCCCCAGAAGCAGATGAGCATAGCAAA...CAGTTTCCGGAGGCTCTTGGTGAAGAGCCCCCAGCAAGCTCGCCTAGGGCCACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR GCA 90 bp | GGGCTGGACACCTGCACCAGAGCACAGCTGCTGGACATCCTGCCTTGGACGCAGGGTCACTGGCTTCTTTaGTCTGGGTGTAGATTTCTC | + |
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Preference number: 4 (lower is better) Translates to: GLDTCTRAQLLDILPWTQGHWLL*SGCRFL Trigger: GAGAAATCTACACCCAGAGCAAAGAAGCCAGTGACC...CTGCGTCCAAGGCAGGATGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCAGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR TCA 90 bp | CCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCAAACATTCCAGGCCACTaGGGAACACAGGTCCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PPYYIQTRVVGLDTCTRANIPGH*GTQVLS Trigger: GCTCAGGACCTGTGTTCCTCAGTGGCCTGGAATGTT...TGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR TCA 90 bp | GGGGCTCTTCACCAAGAGCCTCCGGAAACTGGAGGGCTGGGTTACAGGGTTACACAAGTCTGCTTTTCCTaGTTGAGTTCACTACCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GALHQEPPETGGLGYRVTQVCFS*LSSLPQ Trigger: CTGGGGTAGTGAACTCAATCAGGAAAAGCAGACTTG...TGTAACCCTGTAACCCAGCCCTCCAGTTTCCGGAGGCTCTTGGTGAAGAGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CCA 90 bp | CTGGGGGCTCTTCACCAAGAGCCTCCGGAAACTGGAGGGCTGGGTTACAGGGTTAGCAATAGTGATTGGTaGTTTTCTGCCTTCCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LGALHQEPPETGGLGYRVSNSDW*FSAFLG Trigger: TCCCAGGAAGGCAGAAAACCACCAATCACTATTGCT...AACCCTGTAACCCAGCCCTCCAGTTTCCGGAGGCTCTTGGTGAAGAGCCCCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR TCA 90 bp | GCCACACCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCTCTGCTTTTCCTGATTaGGTTCACTACCCCAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: ATPPYYIQTRVVGLDTCTSAFPD*VHYPRA Trigger: TGCTCTGGGGTAGTGAACTCAATCAGGAAAAGCAGA...GGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTGTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR TCA 90 bp | CTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCACAGCAGAAAGCTCTATACCTaGCACAGTGACCATGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LITFRLGWWGWTPAPEHSRKLYT*HSDHGQ Trigger: CTGCCCATGGTCACTGTGTCAGGTATAGAGCTTTCT...GCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CCA 90 bp | CCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCATCCTTCTTCTCGCCTTaGCCTCTAAAGGTGCAAGTC | + |
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Preference number: 4 (lower is better) Translates to: PPYYIQTRVVGLDTCTRASFFSP*PLKVQV Trigger: GACTTGCACCTTTAGAGGCCAAGGCGAGAAGAAGGA...TGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CCA 90 bp | CCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCAATGCTCATCTGCTTCTaGGGAGCCACCCTTTTGACT | + |
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Preference number: 4 (lower is better) Translates to: PPYYIQTRVVGLDTCTRAMLICF*GATLLT Trigger: AGTCAAAAGGGTGGCTCCCCAGAAGCAGATGAGCAT...TGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR GCA 90 bp | TATTGTGGCCCTAGGCGAGCTTGCTGGGGGCTCTTCACCAAGAGCCTCCGGAAATCTTTTTCTTTGCTATaGTCATCTGCTTCTGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: YCGPRRACWGLFTKSLRKSFSLL*SSASGE Trigger: CTCCCCAGAAGCAGATGAGCATAGCAAAGAAAAAGA...TTTCCGGAGGCTCTTGGTGAAGAGCCCCCAGCAAGCTCGCCTAGGGCCACAATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CCA 90 bp | CCACACCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCATCATTTCTTGGTCACTaGCTTCTTTGCTCTGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: PHHLITFRLGWWGWTPAPSFLGH*LLCSGC Trigger: ACACCCAGAGCAAAGAAGCCAGTGACCAAGAAATGA...TGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CAA 90 bp | TGGACACCTGCACCAGAGCACAGCTGCTGGACATCCTGCCTTGGACGCAGAAGACGGTTCACCTCCTCTTaGGCTTTCTCCCCCAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: WTPAPEHSCWTSCLGRRRRFTSS*AFSPRQ Trigger: CTGCCTGGGGGAGAAAGCCAAAGAGGAGGTGAACCG...TCTTCTGCGTCCAAGGCAGGATGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CAA 90 bp | AGGCGAGCTTGCTGGGGGCTCTTCACCAAGAGCCTCCGGAAACTGGAGGGCTGGAGCCACCCTTTTGACTaGTTTGACAGGTATCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: RRACWGLFTKSLRKLEGWSHPFD*FDRYLL Trigger: GAGGAGATACCTGTCAAACAAGTCAAAAGGGTGGCT...CCAGCCCTCCAGTTTCCGGAGGCTCTTGGTGAAGAGCCCCCAGCAAGCTCGCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS TCA 90 bp | GCCAGTCCTGAGCCGAAAAGTTACTGGAGGAGAAAGCTCTATACCTaGCACAGTGACCATGGGCAGGACGGAGGCCTTCAGCGTAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: ASPEPKSYWRRKLYT*HSDHGQDGGLQRSN Trigger: ATTGCTACGCTGAAGGCCTCCGTCCTGCCCATGGTCACTGTGTCAGGTATAGAGCTTTCTCCTCCAGTAACTTTTCGGCTCAGGACTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062629.5 ENSMUST00000228473.2 |
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| CDS-3UTR CAA 90 bp | CCACACCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCACCCAGAGCATGTTTTTaGCTGTGGTTTCGGTCACGC | + |
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Preference number: 5 (lower is better) Translates to: PHHLITFRLGWWGWTPAPPRACF*LWFRSR Trigger: GCGTGACCGAAACCACAGCAAAAAACATGCTCTGGG...TGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CAA 90 bp | TTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCAGAGCACAGCTGCTGGACAACCCTTTTGACTTGTTaGACAGGTATCTCCTCTAGC | + |
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Preference number: 5 (lower is better) Translates to: FRLGWWGWTPAPEHSCWTTLLTC*TGISSS Trigger: GCTAGAGGAGATACCTGTCAAACAAGTCAAAAGGGT...TGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS CCA 90 bp | GAGGCCTTCAGCGTAGCAATAGTGATTGGTGGTTTTCTGCCTTCCTaGGAGAGGACTTCCACACGGTTCACCTCCTCTTTGGCTTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: EAFSVAIVIGGFLPS*ERTSTRFTSSLAFS Trigger: GGAGAAAGCCAAAGAGGAGGTGAACCGTGTGGAAGTCCTCTCCCAGGAAGGCAGAAAACCACCAATCACTATTGCTACGCTGAAGGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062629.5 ENSMUST00000228473.2 |
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| CDS-3UTR CAA 90 bp | CCACACCACCTTATTACATTCAGACTAGGGTGGTGGGGCTGGACACCTGCACCATGGGGAGCCACCCTTTaGACTTGTTTGACAGGTATC | + |
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Preference number: 5 (lower is better) Translates to: PHHLITFRLGWWGWTPAPWGATL*TCLTGI Trigger: GATACCTGTCAAACAAGTCAAAAGGGTGGCTCCCCA...TGGTGCAGGTGTCCAGCCCCACCACCCTAGTCTGAATGTAATAAGGTGGTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS-3UTR CAA 90 bp | CTGGACACCTGCACCAGAGCACAGCTGCTGGACATCCTGCCTTGGACGCAGAAGCCACCTTCTTTTTCTTaGCTATGCTCATCTGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LDTCTRAQLLDILPWTQKPPSFS*LCSSAS Trigger: AGAAGCAGATGAGCATAGCAAAGAAAAAGAAGGTGG...CTTCTGCGTCCAAGGCAGGATGTCCAGCAGCTGTGCTCTGGTGCAGGTGTCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS TCA 90 bp | TTTGCTCTGGGTGTAGATTTCTCCTTCTTCCAGGGACTCTTGTCCTaGGGGCTGGGCCTCACTACTGTTTCATCCTCTTCTTTTTCCACC | + |
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Preference number: 5 (lower is better) Translates to: FALGVDFSFFQGLLS*GLGLTTVSSSSFST Trigger: GGTGGAAAAAGAAGAGGATGAAACAGTAGTGAGGCCCAGCCCTCAGGACAAGAGTCCCTGGAAGAAGGAGAAATCTACACCCAGAGCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS CCA 72 bp | GGGCAGGACGGAGGCCTTCAGCGTAGCAATAGTGATTaGTGGTTTTCTGCCTTCCTGGGAGAGGACTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: GQDGGLQRSNSD*WFSAFLGEDFH Trigger: GTGGAAGTCCTCTCCCAGGAAGGCAGAAAACCACCAATCACTATTGCTACGCTGAAGGCCTCCGTCCTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062629.5 ENSMUST00000228473.2 |
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| CDS CCA 72 bp | CAGGACGGAGGCCTTCAGCGTAGCAATAGTGATTGGTaGTTTTCTGCCTTCCTGGGAGAGGACTTCCACACG | + |
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Preference number: 6 (lower is better) Translates to: QDGGLQRSNSDW*FSAFLGEDFHT Trigger: CGTGTGGAAGTCCTCTCCCAGGAAGGCAGAAAACCACCAATCACTATTGCTACGCTGAAGGCCTCCGTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062629.5 ENSMUST00000228473.2 |
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| CDS CAA 90 bp | TTTCTGCCTTCCTGGGAGAGGACTTCCACACGGTTCACCTCCTCTTaGGCTTTCTCCCCCAGGCAGATCGTGCTGAGCAAGAGTTTACAG | + |
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Preference number: 6 (lower is better) Translates to: FLPSWERTSTRFTSS*AFSPRQIVLSKSLQ Trigger: CTGTAAACTCTTGCTCAGCACGATCTGCCTGGGGGAGAAAGCCAAAGAGGAGGTGAACCGTGTGGAAGTCCTCTCCCAGGAAGGCAGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062629.5 ENSMUST00000228473.2 |
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| CDS TCA 72 bp | GAGCCGAAAAGTTACTGGAGGAGAAAGCTCTATACCTaGCACAGTGACCATGGGCAGGACGGAGGCCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: EPKSYWRRKLYT*HSDHGQDGGLQ Trigger: CTGAAGGCCTCCGTCCTGCCCATGGTCACTGTGTCAGGTATAGAGCTTTCTCCTCCAGTAACTTTTCGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062629.5 ENSMUST00000228473.2 |
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| CDS TCA 72 bp | GGTGTAGATTTCTCCTTCTTCCAGGGACTCTTGTCCTaGGGGCTGGGCCTCACTACTGTTTCATCCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: GVDFSFFQGLLS*GLGLTTVSSSS Trigger: AGAAGAGGATGAAACAGTAGTGAGGCCCAGCCCTCAGGACAAGAGTCCCTGGAAGAAGGAGAAATCTACACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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| CDS CCA 72 bp | AGCGTAGCAATAGTGATTGGTGGTTTTCTGCCTTCCTaGGAGAGGACTTCCACACGGTTCACCTCCTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: SVAIVIGGFLPS*ERTSTRFTSSL Trigger: CAAAGAGGAGGTGAACCGTGTGGAAGTCCTCTCCCAGGAAGGCAGAAAACCACCAATCACTATTGCTACGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062629.5 ENSMUST00000228473.2 |
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| CDS CCA 72 bp | ATTTCTCCTTCTTCCAGGGACTCTTGTCCTGAGGGCTaGGCCTCACTACTGTTTCATCCTCTTCTTTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: ISPSSRDSCPEG*ASLLFHPLLFP Trigger: TGGAAAAAGAAGAGGATGAAACAGTAGTGAGGCCCAGCCCTCAGGACAAGAGTCCCTGGAAGAAGGAGAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062629.5 |
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