Pregenerated sensors for NPM1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057113

Ensembl transcript IDs: ENSMUST00000075641.10, ENSMUST00000101375.5, ENSMUST00000109354.10

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	TTCCAGCCTGCAAGGGGGAATGGATGGCCAATCAGGAAAGGGGATTaGGATGTCTGGATTGTTGATGGTACTATATTTGTTTCTCCTTTT	+
Preference number: 1 (lower is better) Translates to: FQPARGNGWPIRKGD*DVWIVDGTIFVSPF Trigger: AAAAGGAGAAACAAATATAGTACCATCAACAATCCAGACATCTCAATCCCCTTTCCTGATTGGCCATCCATTCCCCCTTGCAGGCTGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109354.10
3UTR TCA 72 bp	GCAAGGGGGAATGGATGGCCAATCAGGAAAGGGGATTaGGATGTCTGGATTGTTGATGGTACTATATTTGTT	+
Preference number: 3 (lower is better) Translates to: ARGNGWPIRKGD*DVWIVDGTIFV Trigger: AACAAATATAGTACCATCAACAATCCAGACATCTCAATCCCCTTTCCTGATTGGCCATCCATTCCCCCTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109354.10
3UTR TCA 72 bp	TGTGTTTTAAGTGTTAAGTTCCTAAATGGGAATGTATaGACAGTGATTCTGCTCAGAAATGAGGGCACTAAC	+
Preference number: 3 (lower is better) Translates to: CVLSVKFLNGNV*TVILLRNEGTN Trigger: GTTAGTGCCCTCATTTCTGAGCAGAATCACTGTTCATACATTCCCATTTAGGAACTTAACACTTAAAACACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075641.10
CDS-3UTR TCA 90 bp	AAAAACAAGATTGCTTCCAGCCTGCAAGGGGGAATGGATGGCCAATCAGGAAAGCCCCTGCTCCTAAACTaGCCGTTCTTAATGACAACT	+
Preference number: 4 (lower is better) Translates to: KNKIASSLQGGMDGQSGKPLLLN*PFLMTT Trigger: AGTTGTCATTAAGAACGGTCAGTTTAGGAGCAGGGG...CTTTCCTGATTGGCCATCCATTCCCCCTTGCAGGCTGGAAGCAATCTTGTTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000109354.10
CDS-3UTR GCA 90 bp	AAAAACAAGATTGCTTCCAGCCTGCAAGGGGGAATGGATGGCCAATCAGGAAAGGCCTTCATAGTTCATTaGTTCTGCCTCTACGATGTG	+
Preference number: 4 (lower is better) Translates to: KNKIASSLQGGMDGQSGKAFIVH*FCLYDV Trigger: CACATCGTAGAGGCAGAAGCAATGAACTATGAAGGC...CTTTCCTGATTGGCCATCCATTCCCCCTTGCAGGCTGGAAGCAATCTTGTTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000109354.10
CDS-3UTR GCA 90 bp	GAAAAACAAGATTGCTTCCAGCCTGCAAGGGGGAATGGATGGCCAATCAGGAAATTCATCTTCAGACTCTaGATCTTCCTCTACAGCTAC	+
Preference number: 4 (lower is better) Translates to: EKQDCFQPARGNGWPIRKFIFRL*IFLYSY Trigger: GTAGCTGTAGAGGAAGATGCAGAGTCTGAAGATGAA...TTTCCTGATTGGCCATCCATTCCCCCTTGCAGGCTGGAAGCAATCTTGTTTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000109354.10
CDS-3UTR TCA 90 bp	TGGCTATCAATAGAGGAAAGGTGTGTTTTAAGTGTTAAGTTCCTAAATGGGAATCCCCTGCTCCTAAACTaGCCGTTCTTAATGACAACT	+
Preference number: 4 (lower is better) Translates to: WLSIEERCVLSVKFLNGNPLLLN*PFLMTT Trigger: AGTTGTCATTAAGAACGGTCAGTTTAGGAGCAGGGG...ATTCCCATTTAGGAACTTAACACTTAAAACACACCTTTCCTCTATTGATAGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075641.10
CDS-3UTR GCA 90 bp	TGGCTATCAATAGAGGAAAGGTGTGTTTTAAGTGTTAAGTTCCTAAATGGGAATGCCTTCATAGTTCATTaGTTCTGCCTCTACGATGTG	+
Preference number: 4 (lower is better) Translates to: WLSIEERCVLSVKFLNGNAFIVH*FCLYDV Trigger: CACATCGTAGAGGCAGAAGCAATGAACTATGAAGGC...ATTCCCATTTAGGAACTTAACACTTAAAACACACCTTTCCTCTATTGATAGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075641.10
CDS-3UTR GCA 90 bp	ATCCTATGGTTATGTCCAACAGATTGGCTATCAATAGAGGAAAGGTGTGTTTTATTCATCTTCAGACTCTaGATCTTCCTCTACAGCTAC	+
Preference number: 4 (lower is better) Translates to: ILWLCPTDWLSIEERCVLFIFRL*IFLYSY Trigger: GTAGCTGTAGAGGAAGATGCAGAGTCTGAAGATGAA...TAAAACACACCTTTCCTCTATTGATAGCCAATCTGTTGGACATAACCATAGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075641.10
CDS-3UTR CAA 90 bp	AGGAAAAACAAGATTGCTTCCAGCCTGCAAGGGGGAATGGATGGCCAATCAGGATGCCTTCATAGTTCATaGCTTCTGCCTCTACGATGT	+
Preference number: 5 (lower is better) Translates to: RKNKIASSLQGGMDGQSGCLHSS*LLPLRC Trigger: ACATCGTAGAGGCAGAAGCAATGAACTATGAAGGCA...TCCTGATTGGCCATCCATTCCCCCTTGCAGGCTGGAAGCAATCTTGTTTTTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000109354.10
CDS-3UTR CAA 90 bp	AAAACAAGATTGCTTCCAGCCTGCAAGGGGGAATGGATGGCCAATCAGGAAAGGCCTTTGATCTCGGTGTaGATGGTTTTAAGTCTTTTC	+
Preference number: 5 (lower is better) Translates to: KTRLLPACKGEWMANQERPLISV*MVLSLF Trigger: GAAAAGACTTAAAACCATCAACACCGAGATCAAAGG...CCTTTCCTGATTGGCCATCCATTCCCCCTTGCAGGCTGGAAGCAATCTTGTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000109354.10
CDS-3UTR CAA 90 bp	TGGCTATCAATAGAGGAAAGGTGTGTTTTAAGTGTTAAGTTCCTAAATGGGAATTGCCTTCATAGTTCATaGCTTCTGCCTCTACGATGT	+
Preference number: 5 (lower is better) Translates to: WLSIEERCVLSVKFLNGNCLHSS*LLPLRC Trigger: ACATCGTAGAGGCAGAAGCAATGAACTATGAAGGCA...ATTCCCATTTAGGAACTTAACACTTAAAACACACCTTTCCTCTATTGATAGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075641.10
CDS-3UTR CAA 90 bp	TGGCTATCAATAGAGGAAAGGTGTGTTTTAAGTGTTAAGTTCCTAAATGGGAATCCTTTGATCTCGGTGTaGATGGTTTTAAGTCTTTTC	+
Preference number: 5 (lower is better) Translates to: WLSIEERCVLSVKFLNGNPLISV*MVLSLF Trigger: GAAAAGACTTAAAACCATCAACACCGAGATCAAAGG...ATTCCCATTTAGGAACTTAACACTTAAAACACACCTTTCCTCTATTGATAGCCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000075641.10
CDS GCA 72 bp	GTGCTGCCAAGTGCTAAATTCCAATCCATTTGTGGCTaGACAAAGGAAGAAAATCTTCTGAAGCCATGTGAG	+
Preference number: 6 (lower is better) Translates to: VLPSAKFQSICG*TKEENLLKPCE Trigger: CTCACATGGCTTCAGAAGATTTTCTTCCTTTGTGCAGCCACAAATGGATTGGAATTTAGCACTTGGCAGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101375.5