Pregenerated sensors for NPL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042684

Ensembl transcript IDs: ENSMUST00000041874.9

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCCGTGTCGGTGAACTTCAGTCCTTGGAAGGTGGGGATCTTGTCCTaGATCCCGTCCAGCAGCTCCTCAGCGCGAATCTTTACCCCGGTC	+
Preference number: 5 (lower is better) Translates to: SVSVNFSPWKVGILS*IPSSSSSARIFTPV Trigger: GACCGGGGTAAAGATTCGCGCTGAGGAGCTGCTGGACGGGATTCAGGACAAGATCCCCACCTTCCAAGGACTGAAGTTCACCGACACGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS GCA 90 bp	CCTGGCGACGTTCAGAGACGCTCAGGGACAGGCCTTCTCCTGTGGTaGCATTCACAAAAATATTCTTCACCCCCTGTTCCTTCACCAGGT	+
Preference number: 5 (lower is better) Translates to: PGDVQRRSGTGLLLW*HSQKYSSPPVPSPG Trigger: ACCTGGTGAAGGAACAGGGGGTGAAGAATATTTTTGTGAATGGCACCACAGGAGAAGGCCTGTCCCTGAGCGTCTCTGAACGTCGCCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS CCA 90 bp	CGACCTGGCGACGTTCAGAGACGCTCAGGGACAGGCCTTCTCCTGTaGTGCCATTCACAAAAATATTCTTCACCCCCTGTTCCTTCACCA	+
Preference number: 5 (lower is better) Translates to: RPGDVQRRSGTGLLL*CHSQKYSSPPVPSP Trigger: TGGTGAAGGAACAGGGGGTGAAGAATATTTTTGTGAATGGCACCACAGGAGAAGGCCTGTCCCTGAGCGTCTCTGAACGTCGCCAGGTCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS CCA 72 bp	AAACTCCTGGGTGGCTTTCTGCAGAGGAAGCCGGGGTaGGCCCATTGGAATCCCAGAGACCAGCGTCATGAT	+
Preference number: 6 (lower is better) Translates to: KLLGGFLQRKPG*AHWNPRDQRHD Trigger: ATCATGACGCTGGTCTCTGGGATTCCAATGGGCCCACCCCGGCTTCCTCTGCAGAAAGCCACCCAGGAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS CAA 72 bp	CACGTGAATCACCACCTGGTCCAACTTGTTCCTCCCTaGGTTAACCCATTCCTCCGCGACCTGGCGACGTTC	+
Preference number: 6 (lower is better) Translates to: HVNHHLVQLVPP*VNPFLRDLATF Trigger: GAACGTCGCCAGGTCGCGGAGGAATGGGTTAACCAAGGGAGGAACAAGTTGGACCAGGTGGTGATTCACGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS TCA 72 bp	GTGAACTTCAGTCCTTGGAAGGTGGGGATCTTGTCCTaGATCCCGTCCAGCAGCTCCTCAGCGCGAATCTTT	+
Preference number: 6 (lower is better) Translates to: VNFSPWKVGILS*IPSSSSSARIF Trigger: AAAGATTCGCGCTGAGGAGCTGCTGGACGGGATTCAGGACAAGATCCCCACCTTCCAAGGACTGAAGTTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS TCA 72 bp	CGACACATTGGCCGAAATCCAAGAGGTCCGTGTCGGTaGACTTCAGTCCTTGGAAGGTGGGGATCTTGTCCT	+
Preference number: 6 (lower is better) Translates to: RHIGRNPRGPCR*TSVLGRWGSCP Trigger: AGGACAAGATCCCCACCTTCCAAGGACTGAAGTTCACCGACACGGACCTCTTGGATTTCGGCCAATGTGTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS CAA 72 bp	GAAATCCAAGAGGTCCGTGTCGGTGAACTTCAGTCCTaGGAAGGTGGGGATCTTGTCCTGAATCCCGTCCAG	+
Preference number: 6 (lower is better) Translates to: EIQEVRVGELQS*EGGDLVLNPVQ Trigger: CTGGACGGGATTCAGGACAAGATCCCCACCTTCCAAGGACTGAAGTTCACCGACACGGACCTCTTGGATTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS CAA 90 bp	CCCAAAGAGCAAAGCAAACTGTCGCTGGTGATTCTGATCGACACATaGGCCGAAATCCAAGAGGTCCGTGTCGGTGAACTTCAGTCCTTG	+
Preference number: 6 (lower is better) Translates to: PKEQSKLSLVILIDT*AEIQEVRVGELQSL Trigger: CAAGGACTGAAGTTCACCGACACGGACCTCTTGGATTTCGGCCAATGTGTCGATCAGAATCACCAGCGACAGTTTGCTTTGCTCTTTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS TCA 72 bp	AGTTCTTGTGACTCCTTCACGTTTAGTGCTCCCACGTaGATCACCACCTGGTCCAACTTGTTCCTCCCTTGG	+
Preference number: 6 (lower is better) Translates to: SSCDSFTFSAPT*ITTWSNLFLPW Trigger: CCAAGGGAGGAACAAGTTGGACCAGGTGGTGATTCACGTGGGAGCACTAAACGTGAAGGAGTCACAAGAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS GCA 72 bp	GTTCAGAGACGCTCAGGGACAGGCCTTCTCCTGTGGTaGCATTCACAAAAATATTCTTCACCCCCTGTTCCT	+
Preference number: 6 (lower is better) Translates to: VQRRSGTGLLLW*HSQKYSSPPVP Trigger: AGGAACAGGGGGTGAAGAATATTTTTGTGAATGGCACCACAGGAGAAGGCCTGTCCCTGAGCGTCTCTGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS CAA 72 bp	CAAAGCAAACTGTCGCTGGTGATTCTGATCGACACATaGGCCGAAATCCAAGAGGTCCGTGTCGGTGAACTT	+
Preference number: 6 (lower is better) Translates to: QSKLSLVILIDT*AEIQEVRVGEL Trigger: AAGTTCACCGACACGGACCTCTTGGATTTCGGCCAATGTGTCGATCAGAATCACCAGCGACAGTTTGCTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS GCA 72 bp	GTGGTAGTAATAAAATGGCAAAGTAGGAGCTGCGGCTaGCACCTCTCTCAGGAAGCTTATCAGGGCATCTTT	+
Preference number: 6 (lower is better) Translates to: VVVIKWQSRSCG*HLSQEAYQGIF Trigger: AAAGATGCCCTGATAAGCTTCCTGAGAGAGGTGGCAGCCGCAGCTCCTACTTTGCCATTTTATTACTACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS CCA 72 bp	AATGACAGGAAAGTTGATTTCTCCATTCTCTGTCATTaGAGTGATGGTGGCAGCAACAAGACCCCGGAGTTT	+
Preference number: 6 (lower is better) Translates to: NDRKVDFSILCH*SDGGSNKTPEF Trigger: AAACTCCGGGGTCTTGTTGCTGCCACCATCACTCCAATGACAGAGAATGGAGAAATCAACTTTCCTGTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041874.9
CDS TCA 72 bp	GATAAATCTCTGGATACGAAACTGGTAACTGAGCGCTaGAGCCAAGTCCTTCTGTTCAAAAGCTTCCAACAT	+
Preference number: 6 (lower is better) Translates to: DKSLDTKLVTER*SQVLLFKSFQH Trigger: ATGTTGGAAGCTTTTGAACAGAAGGACTTGGCTTCAGCGCTCAGTTACCAGTTTCGTATCCAGAGATTTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041874.9