RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NPHP4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039577

Ensembl transcript IDs: ENSMUST00000056567.6, ENSMUST00000081393.10

Found 418 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATaGAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGG +
Preference number: 1 (lower is better)
Translates to: LGTPLSLCTQPAHRP*RPDLESQRRMSAGR
Trigger: CCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR-3UTR GCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGCCAGCTCACAGGCCATaGAGGCCAGACCTGGAGTCA +
Preference number: 2 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVEPAHRP*RPDLES
Trigger: TGACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGG...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR-3UTR GCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCACGCCTTTGTCTCTCTaGACTCAGCCAGCTCACAGG +
Preference number: 2 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVTPLSL*TQPAHR
Trigger: CCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR CCA 72 bp GCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTaGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCA +
Preference number: 3 (lower is better)
Translates to: ALSQLTGHAGQT*SHSDGCLQGGA
Trigger: TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR GCA 72 bp CCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATaGAGGCCAGACCTGGAGTCACAGCGACGGATGTCT +
Preference number: 3 (lower is better)
Translates to: PLSLCTQPAHRP*RPDLESQRRMS
Trigger: AGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR GCA 72 bp GGAGGTATACCATGGCTAGGGACGCCTTTGTCTCTCTaGACTCAGCCAGCTCACAGGCCATGCAGGCCAGAC +
Preference number: 3 (lower is better)
Translates to: GGIPWLGTPLSL*TQPAHRPCRPD
Trigger: GTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCATGGTATACCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR-3UTR CAA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGTGGCTAGGGACGCCTTaGTCTCTCTGCACTCAGCCA +
Preference number: 3 (lower is better)
Translates to: ESRGVTQPCACHRQSELEWLGTP*SLCTQP
Trigger: TGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCA...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR-3UTR CAA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTGGCTAGGGACGCCTTaGTCTCTCTGCACTCAGCCA +
Preference number: 3 (lower is better)
Translates to: TQPCACHRQSELEVTFTHWLGTP*SLCTQP
Trigger: TGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCA...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR TCA 72 bp GGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTaGGCTGGAGGTCACATTCACTCACTCTCGAGTGGA +
Preference number: 3 (lower is better)
Translates to: GCNTALCVSQAE*AGGHIHSLSSG
Trigger: TCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCTGGCCACGGCGTTCCTaGGCAGTCCTGGGCGGCTCT +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPWPRRS*AVLGGS
Trigger: AGAGCCGCCCAGGACTGCCCAGGAACGCCGTGGCCA...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCTCCTCCAGGGGCGTGTaGAGGCCGGTGGCCTCCTTG +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGSSRGV*RPVASL
Trigger: CAAGGAGGCCACCGGCCTGCACACGCCCCTGGAGGA...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGAGCGAGGCCGGCTaGCTCAGGTCGGCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: QTWSHSDGCLQGGALASRWSEAG*LRSASR
Trigger: CCTGGAAGCCGACCTGAGCCAGCCGGCCTCGCTCCA...CCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTGAGCTGTCCGGGGGCTaGAGAGGGGGCTTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGELSGG*RGGLEE
Trigger: CTCTTCCAAGCCCCCTCTTCAGCCCCCGGACAGCTC...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCCAGGTAGAGCTGGGGTaGCAGGCTCCCACGCAGGTG +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGQVELG*QAPTQV
Trigger: CACCTGCGTGGGAGCCTGGCACCCCAGCTCTACCTG...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTTTGAGGTGGGCGAGCTaGCACCGCCATCCGCTCCAG +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPLRWAS*HRHPLQ
Trigger: CTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAA...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACCCCACAGGAGCACCTaGAAGCGTGTGCCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGAPHRST*KRVPGR
Trigger: CCTCCCTGGCACACGCTTCCAGGTGCTCCTGTGGGG...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACGCGCTGCAGGGAGTaGAGGCAGACCTGCCACGTC +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGTRCRE*RQTCHV
Trigger: GACGTGGCAGGTCTGCCTCCACTCCCTGCAGCGCGT...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTACGCGCTGCAGGGAGTaGAGGCAGACCTGCCACGTC +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPTRCRE*RQTCHV
Trigger: GACGTGGCAGGTCTGCCTCCACTCCCTGCAGCGCGT...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCGCTGCCAGCCCTCCTTaGCCTCACACCCACATGCAG +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPAASPP*PHTHMQ
Trigger: CTGCATGTGGGTGTGAGGCCAAGGAGGGCTGGCAGC...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCAGCGTGTGGTGGGTGGTaGTGGCCTGGCTTAGCACTC +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGAACGGW*WPGLAL
Trigger: GAGTGCTAAGCCAGGCCATCACCACCCACCACACGC...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCAGGCAGAGCACAGCAATaGGCTGGCCAGTCTCCACCC +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGAGRAQQ*AGQSPP
Trigger: GGGTGGAGACTGGCCAGCTCATTGCTGTGCTCTGCC...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCAACCACCTGTGGCCTCTaGACGAAGCCCAGCCCGTTG +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGATTCGL*TKPSPL
Trigger: CAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGT...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCTCCAGCTTCCGCTTGTaGACAGCGTCTGCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPSSFRL*TASASW
Trigger: CCAGGAGGCAGACGCTGTGCACAAGCGGAAGCTGGA...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCCTCCAGGGGTGGGTGTaGCTTCAGGGTGTACTGCAG +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALALQGWV*LQGVLQ
Trigger: CTGCAGTACACCCTGAAGCCACACCCACCCCTGGAG...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCATTCTCAGGGAGCAGGTaGAAGGCGGGCTCCAGGGGT +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGAFSGSR*KAGSRG
Trigger: ACCCCTGGAGCCCGCCTTCCACCTGCTCCCTGAGAA...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCGGGGAAGCCGTCAGCTaGGAGAGCGAGAGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: ARDAFVSLHSASSQAMQAGEAVS*ESESPG
Trigger: CCCAGGGCTCTCGCTCTCCCAGCTGACGGCTTCCCC...GGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGTGGCCACGGCGTTCCTaGGCAGTCCTGGGCGGCTCT +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWWPRRS*AVLGGS
Trigger: AGAGCCGCCCAGGACTGCCCAGGAACGCCGTGGCCA...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCCAGCGCTGCTCTCCTaGCTTCAGGAACCCGGGATC +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPPALLS*LQEPGI
Trigger: GATCCCGGGTTCCTGAAGCCAGGAGAGCAGCGCTGG...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAACAGCGTCTGCCTCCTaGCCTGCAGCCTGGGGCCCC +
Preference number: 4 (lower is better)
Translates to: AFVSLHSASSQAMQARPGTASAS*PAAWGP
Trigger: GGGGCCCCAGGCTGCAGGCCAGGAGGCAGACGCTGT...TCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCAGGCCTTGGAGATGAGTaGCTGGCGGCAGGAGAGGCA +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGAGLGDE*LAAGEA
Trigger: TGCCTCTCCTGCCGCCAGCCACTCATCTCCAAGGCC...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCCCAGTGTGTTCTGGGTaGAGGCTCTGTGCCAGTCAC +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALAPVCSG*RLCASH
Trigger: GTGACTGGCACAGAGCCTTCACCCAGAACACACTGG...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCCCGTTTGTCCTGGGCTaGAGAGGTGGGAGATTCTGG +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPPFVLG*RGGRFW
Trigger: CCAGAATCTCCCACCTCTGCAGCCCAGGACAAACGG...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCTCGCTCTCTGTGGGTaGGGAGGGACCAGTGTGTTC +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGLALCG*GGTSVF
Trigger: GAACACACTGGTCCCTCCCCACCCACAGAGAGCGAG...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCAGGCCAGGGATCTGCTaGAAACCAGACACCAGGAGG +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPRPGIC*KPDTRR
Trigger: CCTCCTGGTGTCTGGTTTCCAGCAGATCCCTGGCCT...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCCCCTTCACTACCGTGTaGACTCCGATGGGCTTGACG +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALAPFTTV*TPMGLT
Trigger: CGTCAAGCCCATCGGAGTCCACACGGTAGTGAAGGG...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTTGTGTGTCAGCAGCATaGCGGCCAGCTCGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPCVSAA*RPARCP
Trigger: TGGACAGCGAGCTGGCCGCCATGCTGCTGACACACA...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGATCCACCACGTGGGGCTaGGGCTCCACGGTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: AFVSLHSASSQAMQARPGSTTWG*GSTVRQ
Trigger: CTGCCTGACCGTGGAGCCCCAGCCCCACGTGGTGGA...TCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCCCAGTGTGTTCTGGGTaGAGGCTCTGTGCCAGTCAC +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGPVCSG*RLCASH
Trigger: GTGACTGGCACAGAGCCTTCACCCAGAACACACTGG...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCATAGACCAGACAGCGTaGGGGGTTTTGCTGAACCCC +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALAIDQTA*GVLLNP
Trigger: GGGGTTCAGCAAAACCCCTCACGCTGTCTGGTCTAT...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCAGGTCGGCTTCCAGGTaGGAGACCCTGCTCTCTAAT +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPRSASR*ETLLSN
Trigger: ATTAGAGAGCAGGGTCTCTCACCTGGAAGCCGACCT...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGCCTCCTTCTGAGGGTTaGACCTCACGGGGTCTATGG +
Preference number: 4 (lower is better)
Translates to: QTWSHSDGCLQGGALASRPPSEG*TSRGLW
Trigger: CCATAGACCCCGTGAGGTTCAACCCTCAGAAGGAGG...CCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTGTTGGGCCAGCAAGCTaGTCCTGCGACTGTCAGAGT +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPVGPAS*SCDCQS
Trigger: ACTCTGACAGTCGCAGGATCAGCTTGCTGGCCCAAC...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCCCTTCTTCAGGAACGTaGGCTCTGGGTGGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPPSSGT*ALGGRS
Trigger: GCTTCTACCACCCAGAGCTCACGTTCCTGAAGAAGG...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGGGCTTGGAAGAGCTTTaGAGAGCCGGGGACAGCGGG +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWGLEEL*RAGDSG
Trigger: CCCGCTGTCCCCGGCTCTGCAAAGCTCTTCCAAGCC...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTTCCTCCAGGGGCGTGTaGAGGCCGGTGGCCTCCTTG +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSSSRGV*RPVASL
Trigger: CAAGGAGGCCACCGGCCTGCACACGCCCCTGGAGGA...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCAGTGCAGGAGGGCTCTTaGGGTGCCATGATACAGCCT +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGAVQEGS*GAMIQP
Trigger: AGGCTGTATCATGGCACCCCAAGAGCCCTCCTGCAC...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGTTCTCAGGGAGCAGGTaGAAGGCGGGCTCCAGGGGT +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWFSGSR*KAGSRG
Trigger: ACCCCTGGAGCCCGCCTTCCACCTGCTCCCTGAGAA...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCAAAGCACAACCACCTGTaGCCTCTGCACGAAGCCCAG +
Preference number: 4 (lower is better)
Translates to: GHAGQTWSHSDGCLQGGAKHNHL*PLHEAQ
Trigger: CTGGGCTTCGTGCAGAGGCCACAGGTGGTTGTGCTT...TGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCCGGGAGTCGCAGGTaGCTTCTCAAAACTAGAGCC +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALASGSRR*LLKTRA
Trigger: GGCTCTAGTTTTGAGAAGCCACCTGCGACTCCCGGA...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGGGGAAGCCGTCAGCTaGGAGAGCGAGAGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELEGEAVS*ESESPG
Trigger: CCCAGGGCTCTCGCTCTCCCAGCTGACGGCTTCCCC...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGGCTGAAGAGGGGGCTTaGAAGAGCTTTGCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: QTWSHSDGCLQGGALASRAEEGA*KSFAEP
Trigger: CGGCTCTGCAAAGCTCTTCCAAGCCCCCTCTTCAGC...CCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTGCAGCCTGGGGCCCCTaGCCAGCTCGAGTGTGTGTC +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSAAWGP*PARVCV
Trigger: GACACACACTCGAGCTGGCCAGGGGCCCCAGGCTGC...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGCAGCCTGGGGCCCCTaGCCAGCTCGAGTGTGTGTC +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELEAAWGP*PARVCV
Trigger: GACACACACTCGAGCTGGCCAGGGGCCCCAGGCTGC...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGACCTGGTCCACCACGTaGGGCTGGGGCTCCACGGTC +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQTWSTT*GWGSTV
Trigger: GACCGTGGAGCCCCAGCCCCACGTGGTGGACCAGGT...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGCCCCACAGGAGCACCTaGAAGCGTGTGCCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLPHRST*KRVPGR
Trigger: CCTCCCTGGCACACGCTTCCAGGTGCTCCTGTGGGG...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCCTGTACCCCATGAGGTaGCAACACAAAGACACCGGC +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALALYPMR*QHKDTG
Trigger: GCCGGTGTCTTTGTGTTGCCACCTCATGGGGTACAG...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCCTCCATCATTTGAGATaGCCCGAGACCTGGATGGCG +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGLHHLR*PETWMA
Trigger: CGCCATCCAGGTCTCGGGTCATCTCAAATGATGGAG...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTGGCCGGTGGCCTCCTTaGAGTACCTCCACTCCTGGC +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSGRWPP*STSTPG
Trigger: GCCAGGAGTGGAGGTACTTCAAGGAGGCCACCGGCC...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGGCAGAGCACAGCAATaGGCTGGCCAGTCTCCACCC +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLGRAQQ*AGQSPP
Trigger: GGGTGGAGACTGGCCAGCTCATTGCTGTGCTCTGCC...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCTTCTTCAGGAACGTaGGCTCTGGGTGGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGPSSGT*ALGGRS
Trigger: GCTTCTACCACCCAGAGCTCACGTTCCTGAAGAAGG...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCAGGATGCACTGGAATaGCGTGGACTCCTTCCCAAG +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGQDALE*RGLLPK
Trigger: CTTGGGAAGGAGTCCACGGCATTCCAGTGCATCCTG...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGAACGGCCTCCACGGGCTaGTGGCTGGCATCAAGGATC +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARTASTG*WLASRI
Trigger: GATCCTTGATGCCAGCCAGCAGCCCGTGGAGGCCGT...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGTTGGCCAAGGTCAGGTaGAGGCGGCCCTTCACTACC +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWLAKVR*RRPFTT
Trigger: GGTAGTGAAGGGCCGCCTGCACCTGACCTTGGCCAA...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp GCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCTCCAGCTTCCGCTTGTaGACAGCGTCTGCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: ARDAFVSLHSASSQAMQASSFRL*TASASW
Trigger: CCAGGAGGCAGACGCTGTGCACAAGCGGAAGCTGGA...GGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATCCCCTCCAGCCTCCTaGAGGCGCACCAGCCGCATC +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTSPPAS*RRTSRI
Trigger: GATGCGGCTGGTGCGCCTGCAGGAGGCTGGAGGGGA...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACGGGTCAGCTGTCCTaGGACACAGGAAACATCCAC +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGTGQLS*DTGNIH
Trigger: GTGGATGTTTCCTGTGTCGCAGGACAGCTGACCCGT...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTACGGGTCAGCTGTCCTaGGACACAGGAAACATCCAC +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGTGQLS*DTGNIH
Trigger: GTGGATGTTTCCTGTGTCGCAGGACAGCTGACCCGT...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTGCCCTTCTCATCCCCTaGTGCCATGGTGATCTCGAA +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGALLIP*CHGDLE
Trigger: TTCGAGATCACCATGGCAGCAGGGGATGAGAAGGGC...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGCTCGCTCTCTGTGGGTaGGGAGGGACCAGTGTGTTC +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWLALCG*GGTSVF
Trigger: GAACACACTGGTCCCTCCCCACCCACAGAGAGCGAG...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCTGGTGGGCTTCACTGTaGTTTTCCACGTCCTCCCAA +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPWWASL*FSTSSQ
Trigger: TTGGGAGGACGTGGAAAACCACAGTGAAGCCCACCA...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCCATCTAAGTGCCATGTaGTGGGCTTCTGGAAGCGAG +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPHLSAM*WASGSE
Trigger: CTCGCTTCCAGAAGCCCACCACATGGCACTTAGATG...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCAGAACTGGAACTGGATaGTTCCGGACTCCACCTGCT +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPRTGTG*FRTPPA
Trigger: AGCAGGTGGAGTCCGGAACCATCCAGTTCCAGTTCT...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCAGTGAGAACTGGAACTaGATGGTTCCGGACTCCACC +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPSENWN*MVPDST
Trigger: GGTGGAGTCCGGAACCATCCAGTTCCAGTTCTCACT...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTGGAGAGCGAGAGCCCTaGGCCCACAGGAGAGTCCTG +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSGEREP*AHRRVL
Trigger: CAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTCTCC...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGCCTCCACGGGCTGCTaGCTGGCATCAAGGATCTCG +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLASTGC*LASRIS
Trigger: CGAGATCCTTGATGCCAGCCAGCAGCCCGTGGAGGC...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTGACCAGCTGCAGGCGTaGCGTGGTCTCGGGTGGGAA +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSDQLQA*RGLGWE
Trigger: TTCCCACCCGAGACCACGCCACGCCTGCAGCTGGTC...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGCCTGTTCGTACTCAGTaGCCACGACCTCCAGTTCGT +
Preference number: 4 (lower is better)
Translates to: QTWSHSDGCLQGGALASRPVRTQ*PRPPVR
Trigger: ACGAACTGGAGGTCGTGGCCACTGAGTACGAACAGG...CCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCCTGTTCGTACTCAGTaGCCACGACCTCCAGTTCGT +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPPVRTQ*PRPPVR
Trigger: ACGAACTGGAGGTCGTGGCCACTGAGTACGAACAGG...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGCAATGCTCTCGGCCTTaGTACGTTCCCGGTAGGCAT +
Preference number: 4 (lower is better)
Translates to: QTWSHSDGCLQGGALASRQCSRP*YVPGRH
Trigger: ATGCCTACCGGGAACGTACCAAGGCCGAGAGCATTG...CCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGTCCACCACGTGGGGCTaGGGCTCCACGGTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRSTTWG*GSTVRQ
Trigger: CTGCCTGACCGTGGAGCCCCAGCCCCACGTGGTGGA...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCCTGTACCCCATGAGGTaGCAACACAAAGACACCGGC +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGLYPMR*QHKDTG
Trigger: GCCGGTGTCTTTGTGTTGCCACCTCATGGGGTACAG...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGCCTGGGCGGCTCTGCTaGAGGCAAGAAACTGCAGCA +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLPGRLC*RQETAA
Trigger: TGCTGCAGTTTCTTGCCTTCAGCAGAGCCGCCCAGG...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGAGTTCGTGTGAGACCTaGACAGCTGGCCGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLSSCET*TAGRPW
Trigger: CCAAGGGCGGCCAGCTGTTCAGGTCTCACACGAACT...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCATGGCCACCGTGTGCTaGGTGTTGTGTGGGTTTTTA +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPMATVC*VLCGFL
Trigger: TAAAAACCCACACAACACTCAGCACACGGTGGCCAT...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCAAGAGGTCATCTAAGTaGCATGTGGTGGGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALAKRSSK*HVVGFW
Trigger: CCAGAAGCCCACCACATGGCACTTAGATGACCTCTT...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGCAGGTAGAGCTGGGGTaGCAGGCTCCCACGCAGGTG +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRQVELG*QAPTQV
Trigger: CACCTGCGTGGGAGCCTGGCACCCCAGCTCTACCTG...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAGAGTGGAGGCAGACCTaGCACGTCTGCACGGGCACC +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTEWRQT*HVCTGT
Trigger: GGTGCCCGTGCAGACGTGGCAGGTCTGCCTCCACTC...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCTGCCTCGCTCTCTGTaGGTGGGGAGGGACCAGTGT +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSLPRSL*VGRDQC
Trigger: ACACTGGTCCCTCCCCACCCACAGAGAGCGAGGCAG...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTTGTTCTATGGGATCCTaGAGAAGTGGGTGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGCSMGS*RSGCRR
Trigger: CCTCCTGCACCCACTTCTCCAGGATCCCATAGAACA...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGGCCAGGGATCTGCTaGAAACCAGACACCAGGAGG +
Preference number: 4 (lower is better)
Translates to: ARDAFVSLHSASSQAMQARPGIC*KPDTRR
Trigger: CCTCCTGGTGTCTGGTTTCCAGCAGATCCCTGGCCT...GGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTAGTGAGAACTGGAACTaGATGGTTCCGGACTCCACC +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPSENWN*MVPDST
Trigger: GGTGGAGTCCGGAACCATCCAGTTCCAGTTCTCACT...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTGAGCTCAGTGAGAACTaGAACTGGATGGTTCCGGAC +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPELSEN*NWMVPD
Trigger: GTCCGGAACCATCCAGTTCCAGTTCTCACTGAGCTC...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAGACCAGCTGCAGGCGTaGCGTGGTCTCGGGTGGGAA +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTDQLQA*RGLGWE
Trigger: TTCCCACCCGAGACCACGCCACGCCTGCAGCTGGTC...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAAAGCGTGACCCACGTTaGCCAAGGTCAGGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: AFVSLHSASSQAMQARPGKRDPR*PRSGAG
Trigger: GCCTGCACCTGACCTTGGCCAACGTGGGTCACGCTT...TCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGAAAGCGTGACCCACGTTaGCCAAGGTCAGGTGCAGGC +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARKRDPR*PRSGAG
Trigger: GCCTGCACCTGACCTTGGCCAACGTGGGTCACGCTT...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGGCCTTGGAGATGAGTaGCTGGCGGCAGGAGAGGCA +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELEGLGDE*LAAGEA
Trigger: TGCCTCTCCTGCCGCCAGCCACTCATCTCCAAGGCC...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCGGAACCGCAGGCCGATaGTGTAGGTCTCTCCTCCCG +
Preference number: 4 (lower is better)
Translates to: FVSLHSASSQAMQARPGVGTAGR*CRSLLP
Trigger: CGGGAGGAGAGACCTACACCATCGGCCTGCGGTTCC...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTGGAACCGCAGGCCGATaGTGTAGGTCTCTCCTCCCG +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSGTAGR*CRSLLP
Trigger: CGGGAGGAGAGACCTACACCATCGGCCTGCGGTTCC...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCCTGGGCGGCTCTGCTaGAGGCAAGAAACTGCAGCA +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSPGRLC*RQETAA
Trigger: TGCTGCAGTTTCTTGCCTTCAGCAGAGCCGCCCAGG...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGAGTTCGTGTGAGACCTaGACAGCTGGCCGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELESSCET*TAGRPW
Trigger: CCAAGGGCGGCCAGCTGTTCAGGTCTCACACGAACT...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGCTCCATCATTTGAGATaGCCCGAGACCTGGATGGCG +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWLHHLR*PETWMA
Trigger: CGCCATCCAGGTCTCGGGTCATCTCAAATGATGGAG...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGGCGTGTGGTGGGTGGTaGTGGCCTGGCTTAGCACTC +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRACGGW*WPGLAL
Trigger: GAGTGCTAAGCCAGGCCATCACCACCCACCACACGC...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCCTGCGTCCTTCTCTGTaGTCACCTCAGCAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: FVSLHSASSQAMQARPGVLRPSL*SPQQGP
Trigger: AGGCCCCTGCTGAGGTGATCACAGAGAAGGACGCAG...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGAAGGGGTTGGTGTAGGTaGTGCGCTTGTTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARRGWCR*CACWCP
Trigger: AGGGCACCAACAAGCGCATCACCTACACCAACCCCT...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGACAGCAGCTGCAGGGTaGCGTCCCTCTTCCTGCCTT +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQTAAAG*RPSSCL
Trigger: AAGGCAGGAAGAGGGACGGCACCCTGCAGCTGCTGT...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGAAGGCCAGGGATCTaGTGGAAACCAGACACCAGG +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWRRPGI*WKPDTR
Trigger: CCTGGTGTCTGGTTTCCAGCAGATCCCTGGCCTTCT...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTAAGAGGTCATCTAAGTaGCATGTGGTGGGCTTCTGG +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPKRSSK*HVVGFW
Trigger: CCAGAAGCCCACCACATGGCACTTAGATGACCTCTT...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGACCACCTGTGGCCTCTaGACGAAGCCCAGCCCGTTG +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRTTCGL*TKPSPL
Trigger: CAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGT...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGCCATGCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCCCAGGTGAGAGACCCTaGTCTCTAATACAGATTCGG +
Preference number: 4 (lower is better)
Translates to: RPCRPDLESQRRMSAGRGPGERP*SLIQIR
Trigger: CCGAATCTGTATTAGAGAGCAGGGTCTCTCACCTGG...GCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGCATGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGCTCAACCGTTTGTCCTaGGCTGCAGAGGTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWLNRLS*AAEVGD
Trigger: ATCTCCCACCTCTGCAGCCCAGGACAAACGGTTGAG...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGACCATGTACCTCAGCTaGAGGCCGGGGGAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRTMYLS*RPGEPA
Trigger: TGCTGGCTCCCCCGGCCTCCAGCTGAGGTACATGGT...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACACCAGCGCTGCTCTCCTaGCTTCAGGAACCCGGGATC +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTPALLS*LQEPGI
Trigger: GATCCCGGGTTCCTGAAGCCAGGAGAGCAGCGCTGG...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCCTTCACTACCGTGTaGACTCCGATGGGCTTGACG +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARPFTTV*TPMGLT
Trigger: CGTCAAGCCCATCGGAGTCCACACGGTAGTGAAGGG...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGCGTACAGCGTGTGGTaGGTGGTGATGGCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELEAYSVW*VVMAWL
Trigger: AAGCCAGGCCATCACCACCCACCACACGCTGTACGC...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTAACTTAAGGGGGATGTaGGCAGTCTCCCGGGGTCGC +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSNLRGM*AVSRGR
Trigger: GCGACCCCGGGAGACTGCCCACATCCCCCTTAAGTT...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGGCTGCCAGCCCTCCTTaGCCTCACACCCACATGCAG +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRAASPP*PHTHMQ
Trigger: CTGCATGTGGGTGTGAGGCCAAGGAGGGCTGGCAGC...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GCAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCTCCATCAGCCTCATaGACTTGTTCTGTTCTATGG +
Preference number: 4 (lower is better)
Translates to: AGQTWSHSDGCLQGGALASPSAS*TCSVLW
Trigger: CCATAGAACAGAACAAGTTCATGAGGCTGATGGAGA...GGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGCTCCAGAGGGGCTGTTaGACACGTACTCCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQLQRGC*TRTPAG
Trigger: TCCAGCTGGAGTACGTGTTCAACAGCCCCTCTGGAG...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGCTCCAGAGGGGCTGTTaGACACGTACTCCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELELQRGC*TRTPAG
Trigger: TCCAGCTGGAGTACGTGTTCAACAGCCCCTCTGGAG...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGGGAGCTCATGCTAGCTaGAGGCACCTTATAGACCAG +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWGAHAS*RHLIDQ
Trigger: CTGGTCTATAAGGTGCCTTCAGCTAGCATGAGCTCC...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCGTTGGGCCAGCAAGCTaGTCCTGCGACTGTCAGAGT +
Preference number: 4 (lower is better)
Translates to: FVSLHSASSQAMQARPGVVGPAS*SCDCQS
Trigger: ACTCTGACAGTCGCAGGATCAGCTTGCTGGCCCAAC...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGCGACAAAGAAGTCTTTaGTCTCCGGGCTTGGACCAC +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWRQRSL*SPGLDH
Trigger: GTGGTCCAAGCCCGGAGATCAAAGACTTCTTTGTCG...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGAAGAAGGCCAGGGATCTaGTGGAAACCAGACACCAGG +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARRRPGI*WKPDTR
Trigger: CCTGGTGTCTGGTTTCCAGCAGATCCCTGGCCTTCT...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACACGGCCTCCACGGGCTaGTGGCTGGCATCAAGGATC +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHTASTG*WLASRI
Trigger: GATCCTTGATGCCAGCCAGCAGCCCGTGGAGGCCGT...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGGAAACATCCACGCGCTaGAGGGAGTGGAGGCAGACC +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRETSTR*REWRQT
Trigger: GGTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTC...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAGAAACATCCACGCGCTaGAGGGAGTGGAGGCAGACC +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTETSTR*REWRQT
Trigger: GGTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTC...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGAGCCCTTCTCATCCCCTaGTGCCATGGTGATCTCGAA +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARALLIP*CHGDLE
Trigger: TTCGAGATCACCATGGCAGCAGGGGATGAGAAGGGC...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGCACTTCAGGATGCACTaGAATGCCGTGGACTCCTTC +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWHFRMH*NAVDSF
Trigger: GAAGGAGTCCACGGCATTCCAGTGCATCCTGAAGTG...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGAGGGTCACTCGCAGATaGCATTCAAGCTCCGACAGC +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLRVTRR*HSSSDS
Trigger: GCTGTCGGAGCTTGAATGCCATCTGCGAGTGACCCT...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGTGGTGGGCTTCACTGTaGTTTTCCACGTCCTCCCAA +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWWWASL*FSTSSQ
Trigger: TTGGGAGGACGTGGAAAACCACAGTGAAGCCCACCA...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTAGAGGTGGGAGATTCTaGCTTATTGCCAAAGATGCG +
Preference number: 4 (lower is better)
Translates to: QARPGVTATDVCREGHWPRGGRF*LIAKDA
Trigger: CGCATCTTTGGCAATAAGCCAGAATCTCCCACCTCT...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGACCTGGGCTGCAGAGGTaGGAGATTCTGGCTTATTGC +
Preference number: 4 (lower is better)
Translates to: AFVSLHSASSQAMQARPGPGLQR*EILAYC
Trigger: GCAATAAGCCAGAATCTCCCACCTCTGCAGCCCAGG...TCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGTGCAGGAGGGCTCTTaGGGTGCCATGATACAGCCT +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQVQEGS*GAMIQP
Trigger: AGGCTGTATCATGGCACCCCAAGAGCCCTCCTGCAC...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCTGTTCTATGGGATCCTaGAGAAGTGGGTGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: ARDAFVSLHSASSQAMQACSMGS*RSGCRR
Trigger: CCTCCTGCACCCACTTCTCCAGGATCCCATAGAACA...GGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACACTCCAGGGGTGGGTGTaGCTTCAGGGTGTACTGCAG +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTLQGWV*LQGVLQ
Trigger: CTGCAGTACACCCTGAAGCCACACCCACCCCTGGAG...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGCATCTAAGTGCCATGTaGTGGGCTTCTGGAAGCGAG +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWHLSAM*WASGSE
Trigger: CTCGCTTCCAGAAGCCCACCACATGGCACTTAGATG...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGAAGCACAACCACCTGTaGCCTCTGCACGAAGCCCAG +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQKHNHL*PLHEAQ
Trigger: CTGGGCTTCGTGCAGAGGCCACAGGTGGTTGTGCTT...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACGCCTCCACGGGCTGCTaGCTGGCATCAAGGATCTCG +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHASTGC*LASRIS
Trigger: CGAGATCCTTGATGCCAGCCAGCAGCCCGTGGAGGC...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACACCATGTACCTCAGCTaGAGGCCGGGGGAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHTMYLS*RPGEPA
Trigger: TGCTGGCTCCCCCGGCCTCCAGCTGAGGTACATGGT...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAGCGTACAGCGTGTGGTaGGTGGTGATGGCCTGGCTT +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTAYSVW*VVMAWL
Trigger: AAGCCAGGCCATCACCACCCACCACACGCTGTACGC...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGATCCACTAGGTTGAGATaGACAAAGCGGCTGCCAGCC +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARSTRLR*TKRLPA
Trigger: GGCTGGCAGCCGCTTTGTCCATCTCAACCTAGTGGA...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTTTGGAGATGAGTGGCTaGCGGCAGGAGAGGCACACA +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSLEMSG*RQERHT
Trigger: TGTGTGCCTCTCCTGCCGCCAGCCACTCATCTCCAA...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGGGGAAGGGTACAGGGTaGAGAAGAGGTCATCTAAGT +
Preference number: 4 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWGKGTG*RRGHLS
Trigger: ACTTAGATGACCTCTTCTTCACCCTGTACCCTTCCC...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCTCAAAACTAGAGCCTaGTTTCCAGAGCTGTTCTTG +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGLKTRA*FPELFL
Trigger: CAAGAACAGCTCTGGAAATCAGGCTCTAGTTTTGAG...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCAGGTCGGCTTCCAGGTaGGAGACCCTGCTCTCTAAT +
Preference number: 4 (lower is better)
Translates to: FVSLHSASSQAMQARPGVRSASR*ETLLSN
Trigger: ATTAGAGAGCAGGGTCTCTCACCTGGAAGCCGACCT...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGCCTCCTTCTGAGGGTTaGACCTCACGGGGTCTATGG +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRPPSEG*TSRGLW
Trigger: CCATAGACCCCGTGAGGTTCAACCCTCAGAAGGAGG...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCATGGCCACCGTGTGCTaGGTGTTGTGTGGGTTTTTA +
Preference number: 4 (lower is better)
Translates to: ARDAFVSLHSASSQAMQAMATVC*VLCGFL
Trigger: TAAAAACCCACACAACACTCAGCACACGGTGGCCAT...GGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp AGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACTATGTCCACTAGGTTaGGATGGACAAAGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: RDAFVSLHSASSQAMQARLCPLG*DGQSGC
Trigger: GCAGCCGCTTTGTCCATCTCAACCTAGTGGACATAG...TCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGCTATGTCCACTAGGTTaGGATGGACAAAGCGGCTGC +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLLCPLG*DGQSGC
Trigger: GCAGCCGCTTTGTCCATCTCAACCTAGTGGACATAG...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAAGGGGTTGGTGTAGGTaGTGCGCTTGTTGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTRGWCR*CACWCP
Trigger: AGGGCACCAACAAGCGCATCACCTACACCAACCCCT...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGCAGGATGCACTGGAATaGCGTGGACTCCTTCCCAAG +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQQDALE*RGLLPK
Trigger: CTTGGGAAGGAGTCCACGGCATTCCAGTGCATCCTG...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGCCGTTTGTCCTGGGCTaGAGAGGTGGGAGATTCTGG +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRPFVLG*RGGRFW
Trigger: CCAGAATCTCCCACCTCTGCAGCCCAGGACAAACGG...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTGGGAAGCCAGAAGACTaGAGAAGCACCATCGCAGCT +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSGKPED*RSTIAA
Trigger: AGCTGCGATGGTGCTTCTGCAGTCTTCTGGCTTCCC...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTTGGCCAAGGTCAGGTaGAGGCGGCCCTTCACTACC +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHLAKVR*RRPFTT
Trigger: GGTAGTGAAGGGCCGCCTGCACCTGACCTTGGCCAA...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAGGGACCAGTGTGTTCTaGGTGAAGGCTCTGTGCCAG +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTGTSVF*VKALCQ
Trigger: CTGGCACAGAGCCTTCACCCAGAACACACTGGTCCC...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGCACTTCAGGATGCACTaGAATGCCGTGGACTCCTTC +
Preference number: 4 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLHFRMH*NAVDSF
Trigger: GAAGGAGTCCACGGCATTCCAGTGCATCCTGAAGTG...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCAGGGTCACTCGCAGATaGCATTCAAGCTCCGACAGC +
Preference number: 4 (lower is better)
Translates to: FVSLHSASSQAMQARPGVRVTRR*HSSSDS
Trigger: GCTGTCGGAGCTTGAATGCCATCTGCGAGTGACCCT...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGCCTGGGCTGCAGAGGTaGGAGATTCTGGCTTATTGC +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELEPGLQR*EILAYC
Trigger: GCAATAAGCCAGAATCTCCCACCTCTGCAGCCCAGG...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGAAATACACAGTCTGTaGCCACGGCGTTCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELEEIHSL*PRRSWA
Trigger: TGCCCAGGAACGCCGTGGCCACAGACTGTGTATTTC...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCAATGCTCTCGGCCTTaGTACGTTCCCGGTAGGCAT +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSQCSRP*YVPGRH
Trigger: ATGCCTACCGGGAACGTACCAAGGCCGAGAGCATTG...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAGGCTGTCGATCTCGATaGCCACCGTGTGCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTGCRSR*PPCAEC
Trigger: ACACTCAGCACACGGTGGCCATCGAGATCGACAGCC...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAAGTACCTCCACTCCTaGCTGTCCAGGATGATACTG +
Preference number: 4 (lower is better)
Translates to: ARDAFVSLHSASSQAMQAKYLHS*LSRMIL
Trigger: CAGTATCATCCTGGACAGCCAGGAGTGGAGGTACTT...GGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTTCTGTCTTCAGCTCCTaGGGGTGGGAGGTGAAAGCT +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSSVFSS*GWEVKA
Trigger: AGCTTTCACCTCCCACCCCCAGGAGCTGAAGACAGA...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTTCCACTAGGTTGAGATaGACAAAGCGGCTGCCAGCC +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSSTRLR*TKRLPA
Trigger: GGCTGGCAGCCGCTTTGTCCATCTCAACCTAGTGGA...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGTTGGAGATGAGTGGCTaGCGGCAGGAGAGGCACACA +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRLEMSG*RQERHT
Trigger: TGTGTGCCTCTCCTGCCGCCAGCCACTCATCTCCAA...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAATAGACCAGACAGCGTaGGGGGTTTTGCTGAACCCC +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTIDQTA*GVLLNP
Trigger: GGGGTTCAGCAAAACCCCTCACGCTGTCTGGTCTAT...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTGGGCATGCAGAGGAGTaGAGGGAAGTTCCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSGHAEE*REVPVD
Trigger: ATCTACAGGAACTTCCCTTCACTCCTCTGCATGCCC...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGCGACAAAGAAGTCTTTaGTCTCCGGGCTTGGACCAC +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELERQRSL*SPGLDH
Trigger: GTGGTCCAAGCCCGGAGATCAAAGACTTCTTTGTCG...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCTGTCCTCGTGGTCATTaGTGTAGATCAGGATCTCCT +
Preference number: 4 (lower is better)
Translates to: ARDAFVSLHSASSQAMQACPRGH*CRSGSP
Trigger: AGGAGATCCTGATCTACATCAATGACCACGAGGACA...GGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGCAAGCCACTTCAGGATaGACTGGAATGCCGTGGACT +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQQATSG*TGMPWT
Trigger: AGTCCACGGCATTCCAGTGCATCCTGAAGTGGCTTG...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCGAGATTCTGGCTTATTaGCAAAGATGCGAAGAATTC +
Preference number: 4 (lower is better)
Translates to: GVTATDVCREGHWPHGGPEILAY*QRCEEF
Trigger: GAATTCTTCGCATCTTTGGCAATAAGCCAGAATCTC...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCTTAGCACTCCGGCAATaGTCTCGGCCTTGGTACGTT +
Preference number: 4 (lower is better)
Translates to: FVSLHSASSQAMQARPGVLALRQ*SRPWYV
Trigger: AACGTACCAAGGCCGAGAGCATTGCCGGAGTGCTAA...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGTTAGCACTCCGGCAATaGTCTCGGCCTTGGTACGTT +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQLALRQ*SRPWYV
Trigger: AACGTACCAAGGCCGAGAGCATTGCCGGAGTGCTAA...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTGTGTGGGTTTTTAAGTaGAAACTCGAAGAACTCAGC +
Preference number: 4 (lower is better)
Translates to: PGVTATDVCREGHWPHGGVWVFK*KLEELS
Trigger: GCTGAGTTCTTCGAGTTTGCACTTAAAAACCCACAC...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGAGAACTGGAACTGGATaGTTCCGGACTCCACCTGCT +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELERTGTG*FRTPPA
Trigger: AGCAGGTGGAGTCCGGAACCATCCAGTTCCAGTTCT...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGAGCTCAGTGAGAACTaGAACTGGATGGTTCCGGAC +
Preference number: 4 (lower is better)
Translates to: MARDAFVSLHSASSQAMQELSEN*NWMVPD
Trigger: GTCCGGAACCATCCAGTTCCAGTTCTCACTGAGCTC...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCAGGAACGTGAGCTCTaGGTGGTAGAAGCGGAAAAC +
Preference number: 4 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSQEREL*VVEAEN
Trigger: GTTTTCCGCTTCTACCACCCAGAGCTCACGTTCCTG...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGCAGGAACGTGAGCTCTaGGTGGTAGAAGCGGAAAAC +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELEQEREL*VVEAEN
Trigger: GTTTTCCGCTTCTACCACCCAGAGCTCACGTTCCTG...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGTCTGTCTTCAGCTCCTaGGGGTGGGAGGTGAAAGCT +
Preference number: 4 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRSVFSS*GWEVKA
Trigger: AGCTTTCACCTCCCACCCCCAGGAGCTGAAGACAGA...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACACAAGCCACTTCAGGATaGACTGGAATGCCGTGGACT +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTQATSG*TGMPWT
Trigger: AGTCCACGGCATTCCAGTGCATCCTGAAGTGGCTTG...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp CAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGGAGATTCTGGCTTATTaGCAAAGATGCGAAGAATTC +
Preference number: 4 (lower is better)
Translates to: QTWSHSDGCLQGGALASREILAY*QRCEEF
Trigger: GAATTCTTCGCATCTTTGGCAATAAGCCAGAATCTC...CCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAAACACGTACTCCAGCTaGAAGACGATGGCGAAGGCT +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTNTYSS*KTMAKA
Trigger: AGCCTTCGCCATCGTCTTCCAGCTGGAGTACGTGTT...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACGAAATACACAGTCTGTaGCCACGGCGTTCCTGGGCA +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHEIHSL*PRRSWA
Trigger: TGCCCAGGAACGCCGTGGCCACAGACTGTGTATTTC...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATGGCGTGGTCTCGGGTaGGAAACGGTAAAACTGGAA +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTWRGLG*ETVKLE
Trigger: TTCCAGTTTTACCGTTTCCCACCCGAGACCACGCCA...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTTGATCTCCGGGCTTaGACCACTGGCCACCTTAAG +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTFDLRA*TTGHLK
Trigger: CTTAAGGTGGCCAGTGGTCCAAGCCCGGAGATCAAA...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
3UTR CAA 72 bp ATTACTCTCGGAGGTATACCATGGCTAGGGACGCCTTaGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: ITLGGIPWLGTP*SLCTQPAHRPC
Trigger: GCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCATGGTATACCTCCGAGAGTAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACGGGCATGCAGAGGAGTaGAGGGAAGTTCCTGTAGAT +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHGHAEE*REVPVD
Trigger: ATCTACAGGAACTTCCCTTCACTCCTCTGCATGCCC...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACACCAGGTGAGAGACCCTaGTCTCTAATACAGATTCGG +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTPGERP*SLIQIR
Trigger: CCGAATCTGTATTAGAGAGCAGGGTCTCTCACCTGG...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACAAGGGGTCCAGACTCTaGGTCCTTCTCTGTGATCAC +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHKGSRL*VLLCDH
Trigger: GTGATCACAGAGAAGGACGCAGAGTCTGGACCCCTT...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGAGAGGTGGGAGATTCTaGCTTATTGCCAAAGATGCG +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELERGGRF*LIAKDA
Trigger: CGCATCTTTGGCAATAAGCCAGAATCTCCCACCTCT...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGACAGCGTCTGCCTCCTaGCCTGCAGCCTGGGGCCCC +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVETASAS*PAAWGP
Trigger: GGGGCCCCAGGCTGCAGGCCAGGAGGCAGACGCTGT...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGCTCAAAACTAGAGCCTaGTTTCCAGAGCTGTTCTTG +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELELKTRA*FPELFL
Trigger: CAAGAACAGCTCTGGAAATCAGGCTCTAGTTTTGAG...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGCTGAAGGCAAGAAACTaGAGCACAATCTCATTCCCT +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELELKARN*STISFP
Trigger: AGGGAATGAGATTGTGCTGCAGTTTCTTGCCTTCAG...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGTCCCCTCCAGCCTCCTaGAGGCGCACCAGCCGCATC +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVESPPAS*RRTSRI
Trigger: GATGCGGCTGGTGCGCCTGCAGGAGGCTGGAGGGGA...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGACTTGTTCTGTTCTATaGGATCCTGGAGAAGTGGGT +
Preference number: 4 (lower is better)
Translates to: ESRGVTQPCACHRQSELETCSVL*DPGEVG
Trigger: ACCCACTTCTCCAGGATCCCATAGAACAGAACAAGT...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACAAGTACCTCCACTCCTaGCTGTCCAGGATGATACTG +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHKYLHS*LSRMIL
Trigger: CAGTATCATCCTGGACAGCCAGGAGTGGAGGTACTT...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGACCTGGTCCACCACGTaGGGCTGGGGCTCCACGGTC +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVETWSTT*GWGSTV
Trigger: GACCGTGGAGCCCCAGCCCCACGTGGTGGACCAGGT...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGGAGCTGTCCGGGGGCTaGAGAGGGGGCTTGGAAGAG +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVEELSGG*RGGLEE
Trigger: CTCTTCCAAGCCCCCTCTTCAGCCCCCGGACAGCTC...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGTTGAGGTGGGCGAGCTaGCACCGCCATCCGCTCCAG +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVELRWAS*HRHPLQ
Trigger: CTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAA...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCTGGAGCGAGGCCGGCTaGCTCAGGTCGGCTTCCAGG +
Preference number: 4 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVWSEAG*LRSASR
Trigger: CCTGGAAGCCGACCTGAGCCAGCCGGCCTCGCTCCA...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp ACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCCATCAGCCTCATaGACTTGTTCTGTTCTATGG +
Preference number: 4 (lower is better)
Translates to: TQPCACHRQSELEVTFTHSPSAS*TCSVLW
Trigger: CCATAGAACAGAACAAGTTCATGAGGCTGATGGAGA...GTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGGCCGGTGGCCTCCTTaGAGTACCTCCACTCCTGGC +
Preference number: 4 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVGRWPP*STSTPG
Trigger: GCCAGGAGTGGAGGTACTTCAAGGAGGCCACCGGCC...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAGTGTGGGTTTTTAAGTaGAAACTCGAAGAACTCAGC +
Preference number: 4 (lower is better)
Translates to: RGVTQPCACHRQSELEVTVWVFK*KLEELS
Trigger: GCTGAGTTCTTCGAGTTTGCACTTAAAAACCCACAC...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp TTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGAGTGGAGGCAGACCTaGCACGTCTGCACGGGCACC +
Preference number: 4 (lower is better)
Translates to: LETIYKTVCSGQSQPESREWRQT*HVCTGT
Trigger: GGTGCCCGTGCAGACGTGGCAGGTCTGCCTCCACTC...TCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGCTGCGTCCTTCTCTGTaGTCACCTCAGCAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVELRPSL*SPQQGP
Trigger: AGGCCCCTGCTGAGGTGATCACAGAGAAGGACGCAG...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCATGGGGACGAGGATGTaGGACAGGGAGCCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVMGTRM*DREPEP
Trigger: CGGCTCTGGCTCCCTGTCCCACATCCTCGTCCCCAT...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGTGTGTGTCAGCAGCATaGCGGCCAGCTCGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVECVSAA*RPARCP
Trigger: TGGACAGCGAGCTGGCCGCCATGCTGCTGACACACA...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TCATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTATGGGGACGAGGATGTaGGACAGGGAGCCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: SLETIYKTVCSGQSQPESMGTRM*DREPEP
Trigger: CGGCTCTGGCTCCCTGTCCCACATCCTCGTCCCCAT...ACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAAACTTAAGGGGGATGTaGGCAGTCTCCCGGGGTCGC +
Preference number: 4 (lower is better)
Translates to: LETIYKTVCSGQSQPESRNLRGM*AVSRGR
Trigger: GCGACCCCGGGAGACTGCCCACATCCCCCTTAAGTT...TCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGGCTGGCTCCATCATTTaGGATGACCCGAGACCTGGA +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVEAGSII*DDPRPG
Trigger: TCCAGGTCTCGGGTCATCTCAAATGATGGAGCCAGC...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGGGGAAGCCAGAAGACTaGAGAAGCACCATCGCAGCT +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVEGKPED*RSTIAA
Trigger: AGCTGCGATGGTGCTTCTGCAGTCTTCTGGCTTCCC...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGGGACCAGTGTGTTCTaGGTGAAGGCTCTGTGCCAG +
Preference number: 4 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVGTSVF*VKALCQ
Trigger: CTGGCACAGAGCCTTCACCCAGAACACACTGGTCCC...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGTCCGGGAGTCGCAGGTaGCTTCTCAAAACTAGAGCC +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVESGSRR*LLKTRA
Trigger: GGCTCTAGTTTTGAGAAGCCACCTGCGACTCCCGGA...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGCTGAAGAGGGGGCTTaGAAGAGCTTTGCAGAGCCG +
Preference number: 4 (lower is better)
Translates to: LETIYKTVCSGQSQPESRAEEGA*KSFAEP
Trigger: CGGCTCTGCAAAGCTCTTCCAAGCCCCCTCTTCAGC...TCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGGCTGTCGATCTCGATaGCCACCGTGTGCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVGCRSR*PPCAEC
Trigger: ACACTCAGCACACGGTGGCCATCGAGATCGACAGCC...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR TCA 90 bp TTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGCTGGCTCCATCATTTaGGATGACCCGAGACCTGGA +
Preference number: 4 (lower is better)
Translates to: LETIYKTVCSGQSQPESRAGSII*DDPRPG
Trigger: TCCAGGTCTCGGGTCATCTCAAATGATGGAGCCAGC...TCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGAAGGGGTCCAGACTCTaGGTCCTTCTCTGTGATCAC +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVEKGSRL*VLLCDH
Trigger: GTGATCACAGAGAAGGACGCAGAGTCTGGACCCCTT...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCCTCAACCGTTTGTCCTaGGCTGCAGAGGTGGGAGAT +
Preference number: 4 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVLNRLS*AAEVGD
Trigger: ATCTCCCACCTCTGCAGCCCAGGACAAACGGTTGAG...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGAACACGTACTCCAGCTaGAAGACGATGGCGAAGGCT +
Preference number: 4 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVENTYSS*KTMAKA
Trigger: AGCCTTCGCCATCGTCTTCCAGCTGGAGTACGTGTT...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TCATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTTGGCGTGGTCTCGGGTaGGAAACGGTAAAACTGGAA +
Preference number: 4 (lower is better)
Translates to: SLETIYKTVCSGQSQPESWRGLG*ETVKLE
Trigger: TTCCAGTTTTACCGTTTCCCACCCGAGACCACGCCA...ACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081393.10
CDS-3UTR GCA 90 bp TTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGACTGAAGGCAAGAAACTaGAGCACAATCTCATTCCCT +
Preference number: 4 (lower is better)
Translates to: LETIYKTVCSGQSQPESRLKARN*STISFP
Trigger: AGGGAATGAGATTGTGCTGCAGTTTCTTGCCTTCAG...TCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAACTTGTTCTGTTCTATaGGATCCTGGAGAAGTGGGT +
Preference number: 4 (lower is better)
Translates to: LETIYKTVCSGQSQPESRTCSVL*DPGEVG
Trigger: ACCCACTTCTCCAGGATCCCATAGAACAGAACAAGT...TCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp CATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCCTCACAGATGACATTTaGATCACTGCATCGAACATG +
Preference number: 4 (lower is better)
Translates to: HWKPFIKQFVLDSHSLRVLTDDI*ITASNM
Trigger: CATGTTCGATGCAGTGATCCAAATGTCATCTGTGAG...GACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CCA 90 bp TCATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCTCACAGATGACATTTaGATCACTGCATCGAACATG +
Preference number: 4 (lower is better)
Translates to: SLETIYKTVCSGQSQPESLTDDI*ITASNM
Trigger: CATGTTCGATGCAGTGATCCAAATGTCATCTGTGAG...ACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081393.10
CDS GCA 90 bp ACCTGTGGCCTCTGCACGAAGCCCAGCCCGTTGTGGACGCAGACGTaGAGGCGCCGCTCCAGGACCTCGAGGGTGCCGCTGTCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: TCGLCTKPSPLWTQT*RRRSRTSRVPLSSR
Trigger: CCTGCTGGACAGCGGCACCCTCGAGGTCCTGGAGCGGCGCCTGCACGTCTGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp AGCCGGGGACAGCGGGGAAGCCGTCAGCTGGGAGAGCGAGAGCCCTaGGCCCACAGGAGAGTCCTGTGTTGCAGCAAGATCCCGGGCAGC +
Preference number: 5 (lower is better)
Translates to: SRGQRGSRQLGEREP*AHRRVLCCSKIPGS
Trigger: GCTGCCCGGGATCTTGCTGCAACACAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTCTCCCAGCTGACGGCTTCCCCGCTGTCCCCGGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp ACAAGCACAACCACCTGTGGCCTCTGCACGAAGCCCAGCCCGTTGTaGACGCAGACGTGCAGGCGCCGCTCCAGGACCTCGAGGGTGCCG +
Preference number: 5 (lower is better)
Translates to: TSTTTCGLCTKPSPL*TQTCRRRSRTSRVP
Trigger: CGGCACCCTCGAGGTCCTGGAGCGGCGCCTGCACGTCTGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGTTGTGCTTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp AGCCGCATCCTCTCCAGCTTCCGCTTGTGCACAGCGTCTGCCTCCTaGCCTGCAGCCTGGGGCCCCTGGCCAGCTCGAGTGTGTGTCAGC +
Preference number: 5 (lower is better)
Translates to: SRILSSFRLCTASAS*PAAWGPWPARVCVS
Trigger: GCTGACACACACTCGAGCTGGCCAGGGGCCCCAGGCTGCAGGCCAGGAGGCAGACGCTGTGCACAAGCGGAAGCTGGAGAGGATGCGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCGGCTGCCAGCCCTCCTaGGCCTCACACCCACATGCA +
Preference number: 5 (lower is better)
Translates to: GVTATDVCREGHWPHGGPGCQPS*ASHPHA
Trigger: TGCATGTGGGTGTGAGGCCAAGGAGGGCTGGCAGCC...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp GACAGACGGGTCAGCTGTCCTGCGACACAGGAAACATCCACGCGCTaGAGGGAGTGGAGGCAGACCTGCCACGTCTGCACGGGCACCGCC +
Preference number: 5 (lower is better)
Translates to: DRRVSCPATQETSTR*REWRQTCHVCTGTA
Trigger: GGCGGTGCCCGTGCAGACGTGGCAGGTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTCCTGTGTCGCAGGACAGCTGACCCGTCTGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp TCCGGGAGGACCGACGCCCCACCCTGGGGCCGTTGGCATGCTCTGTaGGGCCGTCTGAGCTCAGTGAGAACTGGAACTGGATGGTTCCGG +
Preference number: 5 (lower is better)
Translates to: SGRTDAPPWGRWHAL*GRLSSVRTGTGWFR
Trigger: CCGGAACCATCCAGTTCCAGTTCTCACTGAGCTCAGACGGCCCCACAGAGCATGCCAACGGCCCCAGGGTGGGGCGTCGGTCCTCCCGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CCCACGTTGGCCAAGGTCAGGTGCAGGCGGCCCTTCACTACCGTGTaGACTCCGATGGGCTTGACGCTGCCGAAGCCAGCCACATCGCCG +
Preference number: 5 (lower is better)
Translates to: PTLAKVRCRRPFTTV*TPMGLTLPKPATSP
Trigger: CGGCGATGTGGCTGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTAGTGAAGGGCCGCCTGCACCTGACCTTGGCCAACGTGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GTCAGCTGTCCTGCGACACAGGAAACATCCACGCGCTGCAGGGAGTaGAGGCAGACCTGCCACGTCTGCACGGGCACCGCCAGCCAGCGA +
Preference number: 5 (lower is better)
Translates to: VSCPATQETSTRCRE*RQTCHVCTGTASQR
Trigger: TCGCTGGCTGGCGGTGCCCGTGCAGACGTGGCAGGTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTCCTGTGTCGCAGGACAGCTGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp AAGGCCACGTCCATCTCAGGCACAAGCACAACCACCTGTGGCCTCTaGACGAAGCCCAGCCCGTTGTGGACGCAGACGTGCAGGCGCCGC +
Preference number: 5 (lower is better)
Translates to: KATSISGTSTTTCGL*TKPSPLWTQTCRRR
Trigger: GCGGCGCCTGCACGTCTGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGTTGTGCTTGTGCCTGAGATGGACGTGGCCTT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp GCCAGGCTCCCACGCAGGTGGAACATATCCTCCTCCAGGGGCGTGTaGAGGCCGGTGGCCTCCTTGAAGTACCTCCACTCCTGGCTGTCC +
Preference number: 5 (lower is better)
Translates to: ARLPRRWNISSSRGV*RPVASLKYLHSWLS
Trigger: GGACAGCCAGGAGTGGAGGTACTTCAAGGAGGCCACCGGCCTGCACACGCCCCTGGAGGAGGATATGTTCCACCTGCGTGGGAGCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GTCAGCAGCATGGCGGCCAGCTCGCTGTCCACATCAGCCAGCCTCTaGGCCTGTACCACACGCTTTCGCTTGGGGCCTCCGGGTATGAGG +
Preference number: 5 (lower is better)
Translates to: VSSMAASSLSTSASL*ACTTRFRLGPPGMR
Trigger: CCTCATACCCGGAGGCCCCAAGCGAAAGCGTGTGGTACAGGCCCAGAGGCTGGCTGATGTGGACAGCGAGCTGGCCGCCATGCTGCTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTGGTGCAGGAGGGCTCTaGGGGTGCCATGATACAGCC +
Preference number: 5 (lower is better)
Translates to: PGVTATDVCREGHWPHGGGAGGL*GCHDTA
Trigger: GGCTGTATCATGGCACCCCAAGAGCCCTCCTGCACC...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp GGTCTGTGTCCCCCGAAGGACGAGGGACAGACGGGTCAGCTGTCCTaGGACACAGGAAACATCCACGCGCTGCAGGGAGTGGAGGCAGAC +
Preference number: 5 (lower is better)
Translates to: GLCPPKDEGQTGQLS*DTGNIHALQGVEAD
Trigger: GTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTCCTGTGTCGCAGGACAGCTGACCCGTCTGTCCCTCGTCCTTCGGGGGACACAGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GCGGGTCAAGGCCACGTCCATCTCAGGCACAAGCACAACCACCTGTaGCCTCTGCACGAAGCCCAGCCCGTTGTGGACGCAGACGTGCAG +
Preference number: 5 (lower is better)
Translates to: AGQGHVHLRHKHNHL*PLHEAQPVVDADVQ
Trigger: CTGCACGTCTGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGTTGTGCTTGTGCCTGAGATGGACGTGGCCTTGACCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CGGGGTTCCAAACAGCCCATCGGACCATGTGCATGCACGCCACGCTaGATATTGAGGTGGGCGAGCTGGCACCGCCATCCGCTCCAGAGG +
Preference number: 5 (lower is better)
Translates to: RGSKQPIGPCACTPR*ILRWASWHRHPLQR
Trigger: CCTCTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTTGGAACCCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CAGCGTCTGAGCAGCCAGGTAGTGGGCGAACCAGCGCTGCTCTCCTaGCTTCAGGAACCCGGGATCCACCATGTACCTCAGCTGGAGGCC +
Preference number: 5 (lower is better)
Translates to: QRLSSQVVGEPALLS*LQEPGIHHVPQLEA
Trigger: GGCCTCCAGCTGAGGTACATGGTGGATCCCGGGTTCCTGAAGCCAGGAGAGCAGCGCTGGTTCGCCCACTACCTGGCTGCTCAGACGCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GCGGTGCCCAGTGTAGCGTACAGCGTGTGGTGGGTGGTGATGGCCTaGCTTAGCACTCCGGCAATGCTCTCGGCCTTGGTACGTTCCCGG +
Preference number: 5 (lower is better)
Translates to: AVPSVAYSVWWVVMA*LSTPAMLSALVRSR
Trigger: CCGGGAACGTACCAAGGCCGAGAGCATTGCCGGAGTGCTAAGCCAGGCCATCACCACCCACCACACGCTGTACGCTACACTGGGCACCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GTGCCAGGGAGGCAGGCGGATGGCCTTCTTCAGGAACGTGAGCTCTaGGTGGTAGAAGCGGAAAACCTGGTCCACCACGTGGGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: VPGRQADGLLQEREL*VVEAENLVHHVGLG
Trigger: CCCCAGCCCCACGTGGTGGACCAGGTTTTCCGCTTCTACCACCCAGAGCTCACGTTCCTGAAGAAGGCCATCCGCCTGCCTCCCTGGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CAGGCCAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTGCTCCAGAGGGGCTGTaGAACACGTACTCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: QARPGVTATDVCREGHWPAPEGL*NTYSSW
Trigger: CCAGCTGGAGTACGTGTTCAACAGCCCCTCTGGAGC...AGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTGGCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp CACAGGACAGCAGCTGCAGGGTGCCGTCCCTCTTCCTGCCTTCGGTaGCCACTTCTACCACAGCCACGATGCTGGGGTGGCTCAAGGTCG +
Preference number: 5 (lower is better)
Translates to: HRTAAAGCRPSSCLR*PLLPQPRCWGGSRS
Trigger: CGACCTTGAGCCACCCCAGCATCGTGGCTGTGGTAGAAGTGGTCACCGAAGGCAGGAAGAGGGACGGCACCCTGCAGCTGCTGTCCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp CCAAACAGCCCATCGGACCATGTGCATGCACGCCACGCTGGATATTaGGGTGGGCGAGCTGGCACCGCCATCCGCTCCAGAGGGGCTGTT +
Preference number: 5 (lower is better)
Translates to: PNSPSDHVHARHAGY*GGRAGTAIRSRGAV
Trigger: AACAGCCCCTCTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp TCAGGTGCAGGCGGCCCTTCACTACCGTGTGGACTCCGATGGGCTTaGCGCTGCCGAAGCCAGCCACATCGCCGCTCACGGCCATCATTT +
Preference number: 5 (lower is better)
Translates to: SGAGGPSLPCGLRWA*RCRSQPHRRSRPSF
Trigger: AAATGATGGCCGTGAGCGGCGATGTGGCTGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTAGTGAAGGGCCGCCTGCACCTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp AGTCCCGTGAGTGCTGTGCACGGACACTGTGTTGGGCCAGCAAGCTaGTCCTGCGACTGTCAGAGTCCCCTCCAGCCTCCTGCAGGCGCA +
Preference number: 5 (lower is better)
Translates to: SPVSAVHGHCVGPAS*SCDCQSPLQPPAGA
Trigger: TGCGCCTGCAGGAGGCTGGAGGGGACTCTGACAGTCGCAGGATCAGCTTGCTGGCCCAACACAGTGTCCGTGCACAGCACTCACGGGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp TGGCGCTGCACTTCCAAAGGGGTCCAGACTCTGCGTCCTTCTCTGTaGTCACCTCAGCAGGGGCCTGTGTCGGAGCAAGAGGGCCCACGG +
Preference number: 5 (lower is better)
Translates to: WRCTSKGVQTLRPSL*SPQQGPVSEQEGPR
Trigger: CCGTGGGCCCTCTTGCTCCGACACAGGCCCCTGCTGAGGTGATCACAGAGAAGGACGCAGAGTCTGGACCCCTTTGGAAGTGCAGCGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp CCGCTGTCCAGCAGGCCGACCCCCTCCCGGTCGCTGATGAGCAGCTaGACAAGTTCCTCCTCAAACTTCTCCAGGGAAGGGTACAGGGTG +
Preference number: 5 (lower is better)
Translates to: PLSSRPTPSRSLMSS*TSSSSNFSREGYRV
Trigger: CACCCTGTACCCTTCCCTGGAGAAGTTTGAGGAGGAACTTGTGCAGCTGCTCATCAGCGACCGGGAGGGGGTCGGCCTGCTGGACAGCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp GGGCCCACTTCCAGATCGGGGTTCCAAACAGCCCATCGGACCATGTaGATGCACGCCACGCTGGATATTGAGGTGGGCGAGCTGGCACCG +
Preference number: 5 (lower is better)
Translates to: GPTSRSGFQTAHRTM*MHATLDIEVGELAP
Trigger: CGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTTGGAACCCCGATCTGGAAGTGGGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GGGATCTGCTGGAAACCAGACACCAGGAGGTTCTCAGGGAGCAGGTaGAAGGCGGGCTCCAGGGGTGGGTGTGGCTTCAGGGTGTACTGC +
Preference number: 5 (lower is better)
Translates to: GICWKPDTRRFSGSR*KAGSRGGCGFRVYC
Trigger: GCAGTACACCCTGAAGCCACACCCACCCCTGGAGCCCGCCTTCCACCTGCTCCCTGAGAACCTCCTGGTGTCTGGTTTCCAGCAGATCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp AACATGCACTGGGGGATCCTCGCCAGGCATCCCCACAGGAGCACCTaGAAGCGTGTGCCAGGGAGGCAGGCGGATGGCCTTCTTCAGGAA +
Preference number: 5 (lower is better)
Translates to: NMHWGILARHPHRST*KRVPGRQADGLLQE
Trigger: TTCCTGAAGAAGGCCATCCGCCTGCCTCCCTGGCACACGCTTCCAGGTGCTCCTGTGGGGATGCCTGGCGAGGATCCCCCAGTGCATGTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp GCCCTTGGCGGAGGAGGTGCTTCATCTGGACGCCAGCAGACCCAATaGGGAGCAAGGAGTCTCCATCCCAGACGTCGACCTGCAGCGTCT +
Preference number: 5 (lower is better)
Translates to: ALGGGGASSGRQQTQ*GARSLHPRRRPAAS
Trigger: AGACGCTGCAGGTCGACGTCTGGGATGGAGACTCCTTGCTCCTCATTGGGTCTGCTGGCGTCCAGATGAAGCACCTCCTCCGCCAAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp GATGGCGGCAGCAAGTTGGAACCTCTTGCTCTCGGCTCACAAGCGTaGCCCACGTTGGCCAAGGTCAGGTGCAGGCGGCCCTTCACTACC +
Preference number: 5 (lower is better)
Translates to: DGGSKLEPLALGSQA*PTLAKVRCRRPFTT
Trigger: GGTAGTGAAGGGCCGCCTGCACCTGACCTTGGCCAACGTGGGTCACGCTTGTGAGCCGAGAGCAAGAGGTTCCAACTTGCTGCCGCCATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GGGCCGTTGGCATGCTCTGTGGGGCCGTCTGAGCTCAGTGAGAACTaGAACTGGATGGTTCCGGACTCCACCTGCTTCACCTCCTCGGAG +
Preference number: 5 (lower is better)
Translates to: GPLACSVGPSELSEN*NWMVPDSTCFTSSE
Trigger: CTCCGAGGAGGTGAAGCAGGTGGAGTCCGGAACCATCCAGTTCCAGTTCTCACTGAGCTCAGACGGCCCCACAGAGCATGCCAACGGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCGGCTGCCAGCCCTCCTaGGCCTCACACCCACATGCA +
Preference number: 5 (lower is better)
Translates to: FVSLHSASSQAMQARPGVGCQPS*ASHPHA
Trigger: TGCATGTGGGTGTGAGGCCAAGGAGGGCTGGCAGCC...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp TCCTGTTCGTACTCAGTGGCCACGACCTCCAGTTCGTGTGAGACCTaGACAGCTGGCCGCCCTTGGCGGAGGAGGTGCTTCATCTGGACG +
Preference number: 5 (lower is better)
Translates to: SCSYSVATTSSSCET*TAGRPWRRRCFIWT
Trigger: CGTCCAGATGAAGCACCTCCTCCGCCAAGGGCGGCCAGCTGTTCAGGTCTCACACGAACTGGAGGTCGTGGCCACTGAGTACGAACAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp CCAGCCCTCCTTGGCCTCACACCCACATGCAGGTCCTGTACCCCATaGGGTGGCAACACAAAGACACCGGCAGGGTCTGTCTTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: PALLGLTPTCRSCTP*GGNTKTPAGSVFSS
Trigger: GGAGCTGAAGACAGACCCTGCCGGTGTCTTTGTGTTGCCACCTCATGGGGTACAGGACCTGCATGTGGGTGTGAGGCCAAGGAGGGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp CCACTTCCAGATCGGGGTTCCAAACAGCCCATCGGACCATGTGCATaGACGCCACGCTGGATATTGAGGTGGGCGAGCTGGCACCGCCAT +
Preference number: 5 (lower is better)
Translates to: PLPDRGSKQPIGPCA*TPRWILRWASWHRH
Trigger: ATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTTGGAACCCCGATCTGGAAGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CAGCCACATCGCCGCTCACGGCCATCATTTCCTGTTCGTACTCAGTaGCCACGACCTCCAGTTCGTGTGAGACCTGAACAGCTGGCCGCC +
Preference number: 5 (lower is better)
Translates to: QPHRRSRPSFPVRTQ*PRPPVRVRPEQLAA
Trigger: GGCGGCCAGCTGTTCAGGTCTCACACGAACTGGAGGTCGTGGCCACTGAGTACGAACAGGAAATGATGGCCGTGAGCGGCGATGTGGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GCAAGTTGGAACCTCTTGCTCTCGGCTCACAAGCGTGACCCACGTTaGCCAAGGTCAGGTGCAGGCGGCCCTTCACTACCGTGTGGACTC +
Preference number: 5 (lower is better)
Translates to: ASWNLLLSAHKRDPR*PRSGAGGPSLPCGL
Trigger: GAGTCCACACGGTAGTGAAGGGCCGCCTGCACCTGACCTTGGCCAACGTGGGTCACGCTTGTGAGCCGAGAGCAAGAGGTTCCAACTTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp AACTCGAAGAACTCAGCGGTGCCCAGTGTAGCGTACAGCGTGTGGTaGGTGGTGATGGCCTGGCTTAGCACTCCGGCAATGCTCTCGGCC +
Preference number: 5 (lower is better)
Translates to: NSKNSAVPSVAYSVW*VVMAWLSTPAMLSA
Trigger: GGCCGAGAGCATTGCCGGAGTGCTAAGCCAGGCCATCACCACCCACCACACGCTGTACGCTACACTGGGCACCGCTGAGTTCTTCGAGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CCTCCTTGGCCTCACACCCACATGCAGGTCCTGTACCCCATGAGGTaGCAACACAAAGACACCGGCAGGGTCTGTCTTCAGCTCCTGGGG +
Preference number: 5 (lower is better)
Translates to: PPWPHTHMQVLYPMR*QHKDTGRVCLQLLG
Trigger: CCCCAGGAGCTGAAGACAGACCCTGCCGGTGTCTTTGTGTTGCCACCTCATGGGGTACAGGACCTGCATGTGGGTGTGAGGCCAAGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCGGTGCAGGAGGGCTCTaGGGGTGCCATGATACAGCC +
Preference number: 5 (lower is better)
Translates to: FVSLHSASSQAMQARPGVGAGGL*GCHDTA
Trigger: GGCTGTATCATGGCACCCCAAGAGCCCTCCTGCACC...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGGGGCTTGGAAGAGCTTaGCAGAGCCGGGGACAGCGG +
Preference number: 5 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRGLGRA*QSRGQR
Trigger: CCGCTGTCCCCGGCTCTGCAAAGCTCTTCCAAGCCC...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp GAGTCGAGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGAGGCCGGTGGCCTCCTaGAAGTACCTCCACTCCTGG +
Preference number: 5 (lower is better)
Translates to: ESRGVTQPCACHRQSELERPVAS*KYLHSW
Trigger: CCAGGAGTGGAGGTACTTCAAGGAGGCCACCGGCCT...CTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCTCGACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTAGGCCGGTGGCCTCCTaGAAGTACCTCCACTCCTGG +
Preference number: 5 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSRPVAS*KYLHSW
Trigger: CCAGGAGTGGAGGTACTTCAAGGAGGCCACCGGCCT...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp AGCTCCTGGTCTGTGCTCCCACGACGATGGGGGCATGCAGAGGAGTaGAGGGAAGTTCCTGTAGATGCTCGACAGCAGGCGTTCCCTGGA +
Preference number: 5 (lower is better)
Translates to: SSWSVLPRRWGHAEE*REVPVDARQQAFPG
Trigger: TCCAGGGAACGCCTGCTGTCGAGCATCTACAGGAACTTCCCTTCACTCCTCTGCATGCCCCCATCGTCGTGGGAGCACAGACCAGGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp GCCTCTGGGCCTGTACCACACGCTTTCGCTTGGGGCCTCCGGGTATaGGGAGGCTTCCCCCAGAGAAGAAGCTGGCTCCATCATTTGAGA +
Preference number: 5 (lower is better)
Translates to: ASGPVPHAFAWGLRV*GGFPQRRSWLHHLR
Trigger: TCTCAAATGATGGAGCCAGCTTCTTCTCTGGGGGAAGCCTCCTCATACCCGGAGGCCCCAAGCGAAAGCGTGTGGTACAGGCCCAGAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp CTCCGGCAATGCTCTCGGCCTTGGTACGTTCCCGGTAGGCATCAATaGCCTGCAAGTCCCGTGAGTGCTGTGCACGGACACTGTGTTGGG +
Preference number: 5 (lower is better)
Translates to: LRQCSRPWYVPGRHQ*PASPVSAVHGHCVG
Trigger: CCCAACACAGTGTCCGTGCACAGCACTCACGGGACTTGCAGGTCATTGATGCCTACCGGGAACGTACCAAGGCCGAGAGCATTGCCGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp ACGGGCTGCTGGCTGGCATCAAGGATCTCGGGGAAGCCAGAAGACTaGAGAAGCACCATCGCAGCTCTGGAGAGCTGGCTTCTAGAGCTC +
Preference number: 5 (lower is better)
Translates to: TGCWLASRISGKPED*RSTIAALESWLLEL
Trigger: GAGCTCTAGAAGCCAGCTCTCCAGAGCTGCGATGGTGCTTCTGCAGTCTTCTGGCTTCCCCGAGATCCTTGATGCCAGCCAGCAGCCCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp GTGTTTCGTAGGCATGGCGCTGCACTTCCAAAGGGGTCCAGACTCTaGGTCCTTCTCTGTGATCACCTCAGCAGGGGCCTGTGTCGGAGC +
Preference number: 5 (lower is better)
Translates to: VFRRHGAALPKGSRL*VLLCDHLSRGLCRS
Trigger: GCTCCGACACAGGCCCCTGCTGAGGTGATCACAGAGAAGGACGCAGAGTCTGGACCCCTTTGGAAGTGCAGCGCCATGCCTACGAAACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CTCGGGTGGGAAACGGTAAAACTGGAAGGTGAAATACACAGTCTGTaGCCACGGCGTTCCTGGGCAGTCCTGGGCGGCTCTGCTGAAGGC +
Preference number: 5 (lower is better)
Translates to: LGWETVKLEGEIHSL*PRRSWAVLGGSAEG
Trigger: GCCTTCAGCAGAGCCGCCCAGGACTGCCCAGGAACGCCGTGGCCACAGACTGTGTATTTCACCTTCCAGTTTTACCGTTTCCCACCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp TCAATGACCTGCAAGTCCCGTGAGTGCTGTGCACGGACACTGTGTTaGGCCAGCAAGCTGATCCTGCGACTGTCAGAGTCCCCTCCAGCC +
Preference number: 5 (lower is better)
Translates to: SMTCKSRECCARTLC*ASKLILRLSESPPA
Trigger: GGCTGGAGGGGACTCTGACAGTCGCAGGATCAGCTTGCTGGCCCAACACAGTGTCCGTGCACAGCACTCACGGGACTTGCAGGTCATTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GCAAACTCGAAGAACTCAGCGGTGCCCAGTGTAGCGTACAGCGTGTaGTGGGTGGTGATGGCCTGGCTTAGCACTCCGGCAATGCTCTCG +
Preference number: 5 (lower is better)
Translates to: ANSKNSAVPSVAYSV*WVVMAWLSTPAMLS
Trigger: CGAGAGCATTGCCGGAGTGCTAAGCCAGGCCATCACCACCCACCACACGCTGTACGCTACACTGGGCACCGCTGAGTTCTTCGAGTTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp TCTCGGCTCACCGGGGCCCACGTTCTGGGCCTCACAGATGACATTTaGATCACTGCATCGAACATGCACTGGGGGATCCTCGCCAGGCAT +
Preference number: 5 (lower is better)
Translates to: SRLTGAHVLGLTDDI*ITASNMHWGILARH
Trigger: ATGCCTGGCGAGGATCCCCCAGTGCATGTTCGATGCAGTGATCCAAATGTCATCTGTGAGGCCCAGAACGTGGGCCCCGGTGAGCCGAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCTCCAGAGGGGCTGTaGAACACGTACTCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: MARDAFVSLHSASSQAMQAPEGL*NTYSSW
Trigger: CCAGCTGGAGTACGTGTTCAACAGCCCCTCTGGAGC...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CAGACCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTCTATGTCCACTAGGTaGAGATGGACAAAGCGGCTG +
Preference number: 5 (lower is better)
Translates to: QTWSHSDGCLQGGALASRSMSTR*RWTKRL
Trigger: CAGCCGCTTTGTCCATCTCAACCTAGTGGACATAGA...CCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp ATGGGATCCTGGAGAAGTGGGTGCAGGAGGGCTCTTGGGGTGCCATaGTACAGCCTCAACCGTTTGTCCTGGGCTGCAGAGGTGGGAGAT +
Preference number: 5 (lower is better)
Translates to: MGSWRSGCRRALGVP*YSLNRLSWAAEVGD
Trigger: ATCTCCCACCTCTGCAGCCCAGGACAAACGGTTGAGGCTGTATCATGGCACCCCAAGAGCCCTCCTGCACCCACTTCTCCAGGATCCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp GGCCTTGGTACGTTCCCGGTAGGCATCAATGACCTGCAAGTCCCGTaGGTGCTGTGCACGGACACTGTGTTGGGCCAGCAAGCTGATCCT +
Preference number: 5 (lower is better)
Translates to: GLGTFPVGINDLQVP*VLCTDTVLGQQADP
Trigger: AGGATCAGCTTGCTGGCCCAACACAGTGTCCGTGCACAGCACTCACGGGACTTGCAGGTCATTGATGCCTACCGGGAACGTACCAAGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp GGCGTTCCTGGGCAGTCCTGGGCGGCTCTGCTGAAGGCAAGAAACTaGAGCACAATCTCATTCCCTCGAAGACAGTCCGACTCCTCCTTC +
Preference number: 5 (lower is better)
Translates to: GVPGQSWAALLKARN*STISFPRRQSDSSF
Trigger: GAAGGAGGAGTCGGACTGTCTTCGAGGGAATGAGATTGTGCTGCAGTTTCTTGCCTTCAGCAGAGCCGCCCAGGACTGCCCAGGAACGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GGGGCTGTTGAACACGTACTCCAGCTGGAAGACGATGGCGAAGGCTaGGTGACTGACCATCTCCGGGAGTCGCAGGTGGCTTCTCAAAAC +
Preference number: 5 (lower is better)
Translates to: GAVEHVLQLEDDGEG*VTDHLRESQVASQN
Trigger: GTTTTGAGAAGCCACCTGCGACTCCCGGAGATGGTCAGTCACCCAGCCTTCGCCATCGTCTTCCAGCTGGAGTACGTGTTCAACAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp TTGGCATGCTCTGTGGGGCCGTCTGAGCTCAGTGAGAACTGGAACTaGATGGTTCCGGACTCCACCTGCTTCACCTCCTCGGAGCTCATG +
Preference number: 5 (lower is better)
Translates to: LACSVGPSELSENWN*MVPDSTCFTSSELM
Trigger: CATGAGCTCCGAGGAGGTGAAGCAGGTGGAGTCCGGAACCATCCAGTTCCAGTTCTCACTGAGCTCAGACGGCCCCACAGAGCATGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp AGAGCCGCTCTTGCCCGTCCCATCCAGCTTGACCAGCTGCAGGCGTaGCGTGGTCTCGGGTGGGAAACGGTAAAACTGGAAGGTGAAATA +
Preference number: 5 (lower is better)
Translates to: RAALARPIQLDQLQA*RGLGWETVKLEGEI
Trigger: TATTTCACCTTCCAGTTTTACCGTTTCCCACCCGAGACCACGCCACGCCTGCAGCTGGTCAAGCTGGATGGGACGGGCAAGAGCGGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp GGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTCCCTTTCCAGAGCTGTTCTaGGAAGAGGCACTGATTTTC +
Preference number: 5 (lower is better)
Translates to: GVTATDVCREGHWPHGGPFPELF*EEALIF
Trigger: GAAAATCAGTGCCTCTTCCAAGAACAGCTCTGGAAA...GGGACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp CATCATTTCCTGTTCGTACTCAGTGGCCACGACCTCCAGTTCGTGTaGGACCTGAACAGCTGGCCGCCCTTGGCGGAGGAGGTGCTTCAT +
Preference number: 5 (lower is better)
Translates to: HHFLFVLSGHDLQFV*DLNSWPPLAEEVLH
Trigger: ATGAAGCACCTCCTCCGCCAAGGGCGGCCAGCTGTTCAGGTCTCACACGAACTGGAGGTCGTGGCCACTGAGTACGAACAGGAAATGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp ACGTTCTGGGCCTCACAGATGACATTTGGATCACTGCATCGAACATaGACTGGGGGATCCTCGCCAGGCATCCCCACAGGAGCACCTGGA +
Preference number: 5 (lower is better)
Translates to: TFWASQMTFGSLHRT*TGGSSPGIPTGAPG
Trigger: TCCAGGTGCTCCTGTGGGGATGCCTGGCGAGGATCCCCCAGTGCATGTTCGATGCAGTGATCCAAATGTCATCTGTGAGGCCCAGAACGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CGTCCCATCCAGCTTGACCAGCTGCAGGCGTGGCGTGGTCTCGGGTaGGAAACGGTAAAACTGGAAGGTGAAATACACAGTCTGTGGCCA +
Preference number: 5 (lower is better)
Translates to: RPIQLDQLQAWRGLG*ETVKLEGEIHSLWP
Trigger: TGGCCACAGACTGTGTATTTCACCTTCCAGTTTTACCGTTTCCCACCCGAGACCACGCCACGCCTGCAGCTGGTCAAGCTGGATGGGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GAGCCAGCATCAAAGGAGCCATCTTTATTAATGGGGACGAGGATGTaGGACAGGGAGCCAGAGCCGCTCTTGCCCGTCCCATCCAGCTTG +
Preference number: 5 (lower is better)
Translates to: EPASKEPSLLMGTRM*DREPEPLLPVPSSL
Trigger: CAAGCTGGATGGGACGGGCAAGAGCGGCTCTGGCTCCCTGTCCCACATCCTCGTCCCCATTAATAAAGATGGCTCCTTTGATGCTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CCTGGAGTCACAGCGACGGATGTCTGCAGGGAGGGGCACTGGCCTCACGGTGGTATCAGCCTCATGAACTaGTTCTGTTCTATGGGATCC +
Preference number: 5 (lower is better)
Translates to: PGVTATDVCREGHWPHGGISLMN*FCSMGS
Trigger: GGATCCCATAGAACAGAACAAGTTCATGAGGCTGAT...ACCACCGTGAGGCCAGTGCCCCTCCCTGCAGACATCCGTCGCTGTGACTCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp GGGTATGAGGAGGCTTCCCCCAGAGAAGAAGCTGGCTCCATCATTTaGGATGACCCGAGACCTGGATGGCGGCAGCAAGTTGGAACCTCT +
Preference number: 5 (lower is better)
Translates to: GYEEASPREEAGSII*DDPRPGWRQQVGTS
Trigger: AGAGGTTCCAACTTGCTGCCGCCATCCAGGTCTCGGGTCATCTCAAATGATGGAGCCAGCTTCTTCTCTGGGGGAAGCCTCCTCATACCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp CAAGCCATGACGCAACCAGCTGATGGTAGTCTATGTCCACTAGGTTaGGATGGACAAAGCGGCTGCCAGCCCTCCTTGGCCTCACACCCA +
Preference number: 5 (lower is better)
Translates to: QAMTQPADGSLCPLG*DGQSGCQPSLASHP
Trigger: TGGGTGTGAGGCCAAGGAGGGCTGGCAGCCGCTTTGTCCATCTCAACCTAGTGGACATAGACTACCATCAGCTGGTTGCGTCATGGCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp AACTTCTCCAGGGAAGGGTACAGGGTGAAGAAGAGGTCATCTAAGTaGCATGTGGTGGGCTTCTGGAAGCGAGGCTTCCGCAGGGCATCA +
Preference number: 5 (lower is better)
Translates to: NFSREGYRVKKRSSK*HVVGFWKRGFRRAS
Trigger: TGATGCCCTGCGGAAGCCTCGCTTCCAGAAGCCCACCACATGGCACTTAGATGACCTCTTCTTCACCCTGTACCCTTCCCTGGAGAAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp TTCCTGCCTTCGGTGACCACTTCTACCACAGCCACGATGCTGGGGTaGCTCAAGGTCGTGTGGAAGTACAAGGGCTCATTGAAGGTGATC +
Preference number: 5 (lower is better)
Translates to: FLPSVTTSTTATMLG*LKVVWKYKGSLKVI
Trigger: GATCACCTTCAATGAGCCCTTGTACTTCCACACGACCTTGAGCCACCCCAGCATCGTGGCTGTGGTAGAAGTGGTCACCGAAGGCAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GCCACCTTAAGGAACACATCTCTCGGCTCACCGGGGCCCACGTTCTaGGCCTCACAGATGACATTTGGATCACTGCATCGAACATGCACT +
Preference number: 5 (lower is better)
Translates to: ATLRNTSLGSPGPTF*ASQMTFGSLHRTCT
Trigger: AGTGCATGTTCGATGCAGTGATCCAAATGTCATCTGTGAGGCCCAGAACGTGGGCCCCGGTGAGCCGAGAGATGTGTTCCTTAAGGTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GCGATCCGCATAGATGACGACAAAGAAGTCTTTGATCTCCGGGCTTaGACCACTGGCCACCTTAAGGAACACATCTCTCGGCTCACCGGG +
Preference number: 5 (lower is better)
Translates to: AIRIDDDKEVFDLRA*TTGHLKEHISRLTG
Trigger: CCCGGTGAGCCGAGAGATGTGTTCCTTAAGGTGGCCAGTGGTCCAAGCCCGGAGATCAAAGACTTCTTTGTCGTCATCTATGCGGATCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTACGACAAAGAAGTCTTaGATCTCCGGGCTTGGACCA +
Preference number: 5 (lower is better)
Translates to: LCLSALSQLTGHAGQTWSTTKKS*ISGLGP
Trigger: TGGTCCAAGCCCGGAGATCAAAGACTTCTTTGTCGT...ACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp ATGGCTAGGGACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGACGACAAAGAAGTCTTaGATCTCCGGGCTTGGACCA +
Preference number: 5 (lower is better)
Translates to: MARDAFVSLHSASSQAMQTTKKS*ISGLGP
Trigger: TGGTCCAAGCCCGGAGATCAAAGACTTCTTTGTCGT...CTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGTCCCTAGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp GGACCTTCACACAGAATGTCTCCTCATTCTTGTCCTCGTGGTCATTaGTGTAGATCAGGATCTCCTCCTGCCCGGCGCTGCCACTTGGCA +
Preference number: 5 (lower is better)
Translates to: GPSHRMSPHSCPRGH*CRSGSPPARRCHLA
Trigger: TGCCAAGTGGCAGCGCCGGGCAGGAGGAGATCCTGATCTACATCAATGACCACGAGGACAAGAATGAGGAGACATTCTGTGTGAAGGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp TTATTGCCAAAGATGCGAAGAATTCCAAACCCACAGGACAGCAGCTaGAGGGTGCCGTCCCTCTTCCTGCCTTCGGTGACCACTTCTACC +
Preference number: 5 (lower is better)
Translates to: LLPKMRRIPNPQDSS*RVPSLFLPSVTTST
Trigger: GGTAGAAGTGGTCACCGAAGGCAGGAAGAGGGACGGCACCCTGCAGCTGCTGTCCTGTGGGTTTGGAATTCTTCGCATCTTTGGCAATAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp ACCACTTCTACCACAGCCACGATGCTGGGGTGGCTCAAGGTCGTGTaGAAGTACAAGGGCTCATTGAAGGTGATCCTAGGTGGCTGCTTA +
Preference number: 5 (lower is better)
Translates to: TTSTTATMLGWLKVV*KYKGSLKVILGGCL
Trigger: TAAGCAGCCACCTAGGATCACCTTCAATGAGCCCTTGTACTTCCACACGACCTTGAGCCACCCCAGCATCGTGGCTGTGGTAGAAGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CATCAGCCTCATGAACTTGTTCTGTTCTATGGGATCCTGGAGAAGTaGGTGCAGGAGGGCTCTTGGGGTGCCATGATACAGCCTCAACCG +
Preference number: 5 (lower is better)
Translates to: HQPHELVLFYGILEK*VQEGSWGAMIQPQP
Trigger: CGGTTGAGGCTGTATCATGGCACCCCAAGAGCCCTCCTGCACCCACTTCTCCAGGATCCCATAGAACAGAACAAGTTCATGAGGCTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CTCAGGGCTGTCGATCTCGATGGCCACCGTGTGCTGAGTGTTGTGTaGGTTTTTAAGTGCAAACTCGAAGAACTCAGCGGTGCCCAGTGT +
Preference number: 5 (lower is better)
Translates to: LRAVDLDGHRVLSVV*VFKCKLEELSGAQC
Trigger: ACACTGGGCACCGCTGAGTTCTTCGAGTTTGCACTTAAAAACCCACACAACACTCAGCACACGGTGGCCATCGAGATCGACAGCCCTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGGGAGATTCTGGCTTATaGCCAAAGATGCGAAGAATT +
Preference number: 5 (lower is better)
Translates to: RLCLSALSQLTGHAGQTWGDSGL*PKMRRI
Trigger: AATTCTTCGCATCTTTGGCAATAAGCCAGAATCTCC...CCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp ACGCCTTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGAATGTCTCCTCATTCTaGTCCTCGTGGTCATTGATG +
Preference number: 5 (lower is better)
Translates to: TPLSLCTQPAHRPCRPDLNVSSF*SSWSLM
Trigger: CATCAATGACCACGAGGACAAGAATGAGGAGACATT...CAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAAGGCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp GATCTCGATGGCCACCGTGTGCTGAGTGTTGTGTGGGTTTTTAAGTaGAAACTCGAAGAACTCAGCGGTGCCCAGTGTAGCGTACAGCGT +
Preference number: 5 (lower is better)
Translates to: DLDGHRVLSVVWVFK*KLEELSGAQCSVQR
Trigger: ACGCTGTACGCTACACTGGGCACCGCTGAGTTCTTCGAGTTTGCACTTAAAAACCCACACAACACTCAGCACACGGTGGCCATCGAGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp CTGACCATCTCCGGGAGTCGCAGGTGGCTTCTCAAAACTAGAGCCTaGTTTCCAGAGCTGTTCTTGGAAGAGGCACTGATTTTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: LTISGSRRWLLKTRA*FPELFLEEALIFLL
Trigger: CAGCAGGAAAATCAGTGCCTCTTCCAAGAACAGCTCTGGAAATCAGGCTCTAGTTTTGAGAAGCCACCTGCGACTCCCGGAGATGGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp ACTCGCAGATGGCATTCAAGCTCCGACAGCATGTCTAGGATTCCCTaGTTAATGAGTGGCCCGTCAAGCCACTTCAGGATGCACTGGAAT +
Preference number: 5 (lower is better)
Translates to: TRRWHSSSDSMSRIP*LMSGPSSHFRMHWN
Trigger: ATTCCAGTGCATCCTGAAGTGGCTTGACGGGCCACTCATTAAGCAGGGAATCCTAGACATGCTGTCGGAGCTTGAATGCCATCTGCGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 90 bp TCAACCGTTTGTCCTGGGCTGCAGAGGTGGGAGATTCTGGCTTATTaGCAAAGATGCGAAGAATTCCAAACCCACAGGACAGCAGCTGCA +
Preference number: 5 (lower is better)
Translates to: STVCPGLQRWEILAY*QRCEEFQTHRTAAA
Trigger: TGCAGCTGCTGTCCTGTGGGTTTGGAATTCTTCGCATCTTTGGCAATAAGCCAGAATCTCCCACCTCTGCAGCCCAGGACAAACGGTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp GGGTGCCATGATACAGCCTCAACCGTTTGTCCTGGGCTGCAGAGGTaGGAGATTCTGGCTTATTGCCAAAGATGCGAAGAATTCCAAACC +
Preference number: 5 (lower is better)
Translates to: GCHDTASTVCPGLQR*EILAYCQRCEEFQT
Trigger: GGTTTGGAATTCTTCGCATCTTTGGCAATAAGCCAGAATCTCCCACCTCTGCAGCCCAGGACAAACGGTTGAGGCTGTATCATGGCACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp TTTGTCTCTCTGCACTCAGCCAGCTCACAGGCCATGCAGGCCAGACCTGGAGTCGGAGATTCTGGCTTATaGCCAAAGATGCGAAGAATT +
Preference number: 5 (lower is better)
Translates to: FVSLHSASSQAMQARPGVGDSGL*PKMRRI
Trigger: AATTCTTCGCATCTTTGGCAATAAGCCAGAATCTCC...GACTCCAGGTCTGGCCTGCATGGCCTGTGAGCTGGCTGAGTGCAGAGAGACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp CGTGTCACAGGCAGAGTGAGCTGGAGGTCACATTCACTCACTCTCGAGTGGAGGTTTCCAGAGCTGTTCTaGGAAGAGGCACTGATTTTC +
Preference number: 5 (lower is better)
Translates to: RVTGRVSWRSHSLTLEWRFPELF*EEALIF
Trigger: GAAAATCAGTGCCTCTTCCAAGAACAGCTCTGGAAA...CCTCCACTCGAGAGTGAGTGAATGTGACCTCCAGCTCACTCTGCCTGTGACACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGGGGCTTGGAAGAGCTTaGCAGAGCCGGGGACAGCGG +
Preference number: 5 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVEGLGRA*QSRGQR
Trigger: CCGCTGTCCCCGGCTCTGCAAAGCTCTTCCAAGCCC...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp AGGGGTGTAACACAGCCTTGTGCGTGTCACAGGCAGAGTGAGCTGGAGGTCACAAATGTCTCCTCATTCTaGTCCTCGTGGTCATTGATG +
Preference number: 5 (lower is better)
Translates to: RGVTQPCACHRQSELEVTNVSSF*SSWSLM
Trigger: CATCAATGACCACGAGGACAAGAATGAGGAGACATT...TGTGACCTCCAGCTCACTCTGCCTGTGACACGCACAAGGCTGTGTTACACCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp GTGGCTTCAGGGTGTACTGCAGGCTACAATTCTCCATCAGCCTCATaGACTTGTTCTGTTCTATGGGATCCTGGAGAAGTGGGTGCAGGA +
Preference number: 5 (lower is better)
Translates to: VASGCTAGYNSPSAS*TCSVLWDPGEVGAG
Trigger: TCCTGCACCCACTTCTCCAGGATCCCATAGAACAGAACAAGTTCATGAGGCTGATGGAGAATTGTAGCCTGCAGTACACCCTGAAGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 90 bp ATGATACTGAGCTCAGGGCTGTCGATCTCGATGGCCACCGTGTGCTaGGTGTTGTGTGGGTTTTTAAGTGCAAACTCGAAGAACTCAGCG +
Preference number: 5 (lower is better)
Translates to: MILSSGLSISMATVC*VLCGFLSANSKNSA
Trigger: CGCTGAGTTCTTCGAGTTTGCACTTAAAAACCCACACAACACTCAGCACACGGTGGCCATCGAGATCGACAGCCCTGAGCTCAGTATCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp CAAGGTCGTGTGGAAGTACAAGGGCTCATTGAAGGTGATCCTAGGTaGCTGCTTAGAGGGTTGATTGGTGGGCTTCACTGTGGTTTTCCA +
Preference number: 5 (lower is better)
Translates to: QGRVEVQGLIEGDPR*LLRGLIGGLHCGFP
Trigger: TGGAAAACCACAGTGAAGCCCACCAATCAACCCTCTAAGCAGCCACCTAGGATCACCTTCAATGAGCCCTTGTACTTCCACACGACCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 90 bp ATACAGCCTCAACCGTTTGTCCTGGGCTGCAGAGGTGGGAGATTCTaGCTTATTGCCAAAGATGCGAAGAATTCCAAACCCACAGGACAG +
Preference number: 5 (lower is better)
Translates to: IQPQPFVLGCRGGRF*LIAKDAKNSKPTGQ
Trigger: CTGTCCTGTGGGTTTGGAATTCTTCGCATCTTTGGCAATAAGCCAGAATCTCCCACCTCTGCAGCCCAGGACAAACGGTTGAGGCTGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp TGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGAGTGGAAGGAGTCCTCCTaGAAGCGCAACAGCTCGGGA +
Preference number: 5 (lower is better)
Translates to: WKPFIKQFVLDSHSLRVEWKESS*KRNSSG
Trigger: TCCCGAGCTGTTGCGCTTCAAGGAGGACTCCTTCCA...CTCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp TCATTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTTGGAAGGAGTCCTCCTaGAAGCGCAACAGCTCGGGA +
Preference number: 5 (lower is better)
Translates to: SLETIYKTVCSGQSQPESWKESS*KRNSSG
Trigger: TCCCGAGCTGTTGCGCTTCAAGGAGGACTCCTTCCA...ACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081393.10
CDS-3UTR CAA 90 bp TTGGAAACCATTTATAAAACAGTTTGTTCTGGACAGTCACAGCCTGAGAGTCGATCTATGTCCACTAGGTaGAGATGGACAAAGCGGCTG +
Preference number: 5 (lower is better)
Translates to: LETIYKTVCSGQSQPESRSMSTR*RWTKRL
Trigger: CAGCCGCTTTGTCCATCTCAACCTAGTGGACATAGA...TCGACTCTCAGGCTGTGACTGTCCAGAACAAACTGTTTTATAAATGGTTTCCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp CGCAGACGTGCAGGCGCCGCTCCAGGACCTCGAGGGTaGCGCTGTCCAGCAGGCCGACCCCCTCCCGGTCGC +
Preference number: 6 (lower is better)
Translates to: RRRAGAAPGPRG*RCPAGRPPPGR
Trigger: GCGACCGGGAGGGGGTCGGCCTGCTGGACAGCGGCACCCTCGAGGTCCTGGAGCGGCGCCTGCACGTCTGCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp ACCACCTGTGGCCTCTGCACGAAGCCCAGCCCGTTGTaGACGCAGACGTGCAGGCGCCGCTCCAGGACCTCG +
Preference number: 6 (lower is better)
Translates to: TTCGLCTKPSPL*TQTCRRRSRTS
Trigger: CGAGGTCCTGGAGCGGCGCCTGCACGTCTGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp CTTTGCAGAGCCGGGGACAGCGGGGAAGCCGTCAGCTaGGAGAGCGAGAGCCCTGGGCCCACAGGAGAGTCC +
Preference number: 6 (lower is better)
Translates to: LCRAGDSGEAVS*ESESPGPTGES
Trigger: GGACTCTCCTGTGGGCCCAGGGCTCTCGCTCTCCCAGCTGACGGCTTCCCCGCTGTCCCCGGCTCTGCAAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp AGGGAGCCAGAGCCGCTCTTGCCCGTCCCATCCAGCTaGACCAGCTGCAGGCGTGGCGTGGTCTCGGGTGGG +
Preference number: 6 (lower is better)
Translates to: REPEPLLPVPSS*TSCRRGVVSGG
Trigger: CCCACCCGAGACCACGCCACGCCTGCAGCTGGTCAAGCTGGATGGGACGGGCAAGAGCGGCTCTGGCTCCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 90 bp GGCACAAGCACAACCACCTGTGGCCTCTGCACGAAGCCCAGCCCGTaGTGGACGCAGACGTGCAGGCGCCGCTCCAGGACCTCGAGGGTG +
Preference number: 6 (lower is better)
Translates to: GTSTTTCGLCTKPSP*WTQTCRRRSRTSRV
Trigger: CACCCTCGAGGTCCTGGAGCGGCGCCTGCACGTCTGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGTTGTGCTTGTGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp GGCGGCCCTTCACTACCGTGTGGACTCCGATGGGCTTaGCGCTGCCGAAGCCAGCCACATCGCCGCTCACGG +
Preference number: 6 (lower is better)
Translates to: GGPSLPCGLRWA*RCRSQPHRRSR
Trigger: CCGTGAGCGGCGATGTGGCTGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTAGTGAAGGGCCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GAGCGAGAGCCCTGGGCCCACAGGAGAGTCCTGTGTTaGAGCAAGATCCCGGGCAGCTGGTGCTGGGGTGCC +
Preference number: 6 (lower is better)
Translates to: EREPWAHRRVLC*SKIPGSWCWGA
Trigger: GGCACCCCAGCACCAGCTGCCCGGGATCTTGCTGCAACACAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GAAACATCCACGCGCTGCAGGGAGTGGAGGCAGACCTaGCACGTCTGCACGGGCACCGCCAGCCAGCGATCC +
Preference number: 6 (lower is better)
Translates to: ETSTRCREWRQT*HVCTGTASQRS
Trigger: GGATCGCTGGCTGGCGGTGCCCGTGCAGACGTGGCAGGTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GGGGCCCCTGGCCAGCTCGAGTGTGTGTCAGCAGCATaGCGGCCAGCTCGCTGTCCACATCAGCCAGCCTCT +
Preference number: 6 (lower is better)
Translates to: GAPGQLECVSAA*RPARCPHQPAS
Trigger: AGAGGCTGGCTGATGTGGACAGCGAGCTGGCCGCCATGCTGCTGACACACACTCGAGCTGGCCAGGGGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp CCTGCGACACAGGAAACATCCACGCGCTGCAGGGAGTaGAGGCAGACCTGCCACGTCTGCACGGGCACCGCC +
Preference number: 6 (lower is better)
Translates to: PATQETSTRCRE*RQTCHVCTGTA
Trigger: GGCGGTGCCCGTGCAGACGTGGCAGGTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTCCTGTGTCGCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GCCCGGCGCTGCCACTTGGCAGGAACCGCAGGCCGATaGTGTAGGTCTCTCCTCCCGCCACCTGGAAGGAGT +
Preference number: 6 (lower is better)
Translates to: ARRCHLAGTAGR*CRSLLPPPGRS
Trigger: ACTCCTTCCAGGTGGCGGGAGGAGAGACCTACACCATCGGCCTGCGGTTCCTGCCAAGTGGCAGCGCCGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp ACAACCACCTGTGGCCTCTGCACGAAGCCCAGCCCGTaGTGGACGCAGACGTGCAGGCGCCGCTCCAGGACC +
Preference number: 6 (lower is better)
Translates to: TTTCGLCTKPSP*WTQTCRRRSRT
Trigger: GGTCCTGGAGCGGCGCCTGCACGTCTGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGTTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GTGTTGCAGCAAGATCCCGGGCAGCTGGTGCTGGGGTaGCTGAAGGGGATGCCGGCATCTTCCGGGAGGACC +
Preference number: 6 (lower is better)
Translates to: VLQQDPGQLVLG*LKGMPASSGRT
Trigger: GGTCCTCCCGGAAGATGCCGGCATCCCCTTCAGGCACCCCAGCACCAGCTGCCCGGGATCTTGCTGCAACAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp CTGATCCTGCGACTGTCAGAGTCCCCTCCAGCCTCCTaGAGGCGCACCAGCCGCATCCTCTCCAGCTTCCGC +
Preference number: 6 (lower is better)
Translates to: LILRLSESPPAS*RRTSRILSSFR
Trigger: GCGGAAGCTGGAGAGGATGCGGCTGGTGCGCCTGCAGGAGGCTGGAGGGGACTCTGACAGTCGCAGGATCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GTGGGCAGTCTCCCGGGGTCGCAGGTAGAGCTGGGGTaGCAGGCTCCCACGCAGGTGGAACATATCCTCCTC +
Preference number: 6 (lower is better)
Translates to: VGSLPGSQVELG*QAPTQVEHILL
Trigger: GAGGAGGATATGTTCCACCTGCGTGGGAGCCTGGCACCCCAGCTCTACCTGCGACCCCGGGAGACTGCCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GGACCATGTGCATGCACGCCACGCTGGATATTGAGGTaGGCGAGCTGGCACCGCCATCCGCTCCAGAGGGGC +
Preference number: 6 (lower is better)
Translates to: GPCACTPRWILR*ASWHRHPLQRG
Trigger: GCCCCTCTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp ATGGCGGCCAGCTCGCTGTCCACATCAGCCAGCCTCTaGGCCTGTACCACACGCTTTCGCTTGGGGCCTCCG +
Preference number: 6 (lower is better)
Translates to: MAASSLSTSASL*ACTTRFRLGPP
Trigger: CGGAGGCCCCAAGCGAAAGCGTGTGGTACAGGCCCAGAGGCTGGCTGATGTGGACAGCGAGCTGGCCGCCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp AGAGCGAGAGCCCTGGGCCCACAGGAGAGTCCTGTGTaGCAGCAAGATCCCGGGCAGCTGGTGCTGGGGTGC +
Preference number: 6 (lower is better)
Translates to: RARALGPQESPV*QQDPGQLVLGC
Trigger: GCACCCCAGCACCAGCTGCCCGGGATCTTGCTGCAACACAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp AGGCGGCCCTTCACTACCGTGTGGACTCCGATGGGCTaGACGCTGCCGAAGCCAGCCACATCGCCGCTCACG +
Preference number: 6 (lower is better)
Translates to: RRPFTTVWTPMG*TLPKPATSPLT
Trigger: CGTGAGCGGCGATGTGGCTGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTAGTGAAGGGCCGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp CCCCCGAAGGACGAGGGACAGACGGGTCAGCTGTCCTaGGACACAGGAAACATCCACGCGCTGCAGGGAGTG +
Preference number: 6 (lower is better)
Translates to: PPKDEGQTGQLS*DTGNIHALQGV
Trigger: CACTCCCTGCAGCGCGTGGATGTTTCCTGTGTCGCAGGACAGCTGACCCGTCTGTCCCTCGTCCTTCGGGGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp ACCGACGCCCCACCCTGGGGCCGTTGGCATGCTCTGTaGGGCCGTCTGAGCTCAGTGAGAACTGGAACTGGA +
Preference number: 6 (lower is better)
Translates to: TDAPPWGRWHAL*GRLSSVRTGTG
Trigger: TCCAGTTCCAGTTCTCACTGAGCTCAGACGGCCCCACAGAGCATGCCAACGGCCCCAGGGTGGGGCGTCGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp CAGCGGGGAAGCCGTCAGCTGGGAGAGCGAGAGCCCTaGGCCCACAGGAGAGTCCTGTGTTGCAGCAAGATC +
Preference number: 6 (lower is better)
Translates to: QRGSRQLGEREP*AHRRVLCCSKI
Trigger: GATCTTGCTGCAACACAGGACTCTCCTGTGGGCCCAGGGCTCTCGCTCTCCCAGCTGACGGCTTCCCCGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GGAAGTTCCTGTAGATGCTCGACAGCAGGCGTTCCCTaGAGCGAGGCCGGCTGGCTCAGGTCGGCTTCCAGG +
Preference number: 6 (lower is better)
Translates to: GSSCRCSTAGVP*SEAGWLRSASR
Trigger: CCTGGAAGCCGACCTGAGCCAGCCGGCCTCGCTCCAGGGAACGCCTGCTGTCGAGCATCTACAGGAACTTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp CCCATCGGACCATGTGCATGCACGCCACGCTGGATATaGAGGTGGGCGAGCTGGCACCGCCATCCGCTCCAG +
Preference number: 6 (lower is better)
Translates to: PIGPCACTPRWI*RWASWHRHPLQ
Trigger: CTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp TCAGCCAGCCTCTGGGCCTGTACCACACGCTTTCGCTaGGGGCCTCCGGGTATGAGGAGGCTTCCCCCAGAG +
Preference number: 6 (lower is better)
Translates to: SASLWACTTRFR*GPPGMRRLPPE
Trigger: CTCTGGGGGAAGCCTCCTCATACCCGGAGGCCCCAAGCGAAAGCGTGTGGTACAGGCCCAGAGGCTGGCTGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 90 bp GTCAGGTGCAGGCGGCCCTTCACTACCGTGTGGACTCCGATGGGCTaGACGCTGCCGAAGCCAGCCACATCGCCGCTCACGGCCATCATT +
Preference number: 6 (lower is better)
Translates to: VRCRRPFTTVWTPMG*TLPKPATSPLTAII
Trigger: AATGATGGCCGTGAGCGGCGATGTGGCTGGCTTCGGCAGCGTCAAGCCCATCGGAGTCCACACGGTAGTGAAGGGCCGCCTGCACCTGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp AAGCGAGGCTTCCGCAGGGCATCACCCGTGTCCCCATaGGGCGGGAGAAGGCCAGGGATCTGCTGGAAACCA +
Preference number: 6 (lower is better)
Translates to: KRGFRRASPVSP*GGRRPGICWKP
Trigger: TGGTTTCCAGCAGATCCCTGGCCTTCTCCCGCCTCATGGGGACACGGGTGATGCCCTGCGGAAGCCTCGCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp CCATCGGACCATGTGCATGCACGCCACGCTGGATATTaGGGTGGGCGAGCTGGCACCGCCATCCGCTCCAGA +
Preference number: 6 (lower is better)
Translates to: PSDHVHARHAGY*GGRAGTAIRSR
Trigger: TCTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp AGGTCTCTCCTCCCGCCACCTGGAAGGAGTCCTCCTTaGAGCGCAACAGCTCGGGACGGTCACTGTGCAGGC +
Preference number: 6 (lower is better)
Translates to: RSLLPPPGRSPP*SATARDGHCAG
Trigger: GCCTGCACAGTGACCGTCCCGAGCTGTTGCGCTTCAAGGAGGACTCCTTCCAGGTGGCGGGAGGAGAGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GGGGCATGCAGAGGAGTGAAGGGAAGTTCCTGTAGATaGTCGACAGCAGGCGTTCCCTGGAGCGAGGCCGGC +
Preference number: 6 (lower is better)
Translates to: GACRGVKGSSCR*STAGVPWSEAG
Trigger: GCCGGCCTCGCTCCAGGGAACGCCTGCTGTCGAGCATCTACAGGAACTTCCCTTCACTCCTCTGCATGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp CCACGCAGGTGGAACATATCCTCCTCCAGGGGCGTGTaGAGGCCGGTGGCCTCCTTGAAGTACCTCCACTCC +
Preference number: 6 (lower is better)
Translates to: PRRWNISSSRGV*RPVASLKYLHS
Trigger: GGAGTGGAGGTACTTCAAGGAGGCCACCGGCCTGCACACGCCCCTGGAGGAGGATATGTTCCACCTGCGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GTCAGCTGTCCTGCGACACAGGAAACATCCACGCGCTaGAGGGAGTGGAGGCAGACCTGCCACGTCTGCACG +
Preference number: 6 (lower is better)
Translates to: VSCPATQETSTR*REWRQTCHVCT
Trigger: CGTGCAGACGTGGCAGGTCTGCCTCCACTCCCTGCAGCGCGTGGATGTTTCCTGTGTCGCAGGACAGCTGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GGCCACGTCCATCTCAGGCACAAGCACAACCACCTGTaGCCTCTGCACGAAGCCCAGCCCGTTGTGGACGCA +
Preference number: 6 (lower is better)
Translates to: GHVHLRHKHNHL*PLHEAQPVVDA
Trigger: TGCGTCCACAACGGGCTGGGCTTCGTGCAGAGGCCACAGGTGGTTGTGCTTGTGCCTGAGATGGACGTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp GGCGAGCTGGCACCGCCATCCGCTCCAGAGGGGCTGTaGAACACGTACTCCAGCTGGAAGACGATGGCGAAG +
Preference number: 6 (lower is better)
Translates to: GELAPPSAPEGL*NTYSSWKTMAK
Trigger: CTTCGCCATCGTCTTCCAGCTGGAGTACGTGTTCAACAGCCCCTCTGGAGCGGATGGCGGTGCCAGCTCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 90 bp TCCAAACAGCCCATCGGACCATGTGCATGCACGCCACGCTGGATATaGAGGTGGGCGAGCTGGCACCGCCATCCGCTCCAGAGGGGCTGT +
Preference number: 6 (lower is better)
Translates to: SKQPIGPCACTPRWI*RWASWHRHPLQRGC
Trigger: ACAGCCCCTCTGGAGCGGATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 90 bp TTATTAATGGGGACGAGGATGTGGGACAGGGAGCCAGAGCCGCTCTaGCCCGTCCCATCCAGCTTGACCAGCTGCAGGCGTGGCGTGGTC +
Preference number: 6 (lower is better)
Translates to: LLMGTRMWDREPEPL*PVPSSLTSCRRGVV
Trigger: GACCACGCCACGCCTGCAGCTGGTCAAGCTGGATGGGACGGGCAAGAGCGGCTCTGGCTCCCTGTCCCACATCCTCGTCCCCATTAATAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp TACTCAGTGGCCACGACCTCCAGTTCGTGTGAGACCTaGACAGCTGGCCGCCCTTGGCGGAGGAGGTGCTTC +
Preference number: 6 (lower is better)
Translates to: YSVATTSSSCET*TAGRPWRRRCF
Trigger: GAAGCACCTCCTCCGCCAAGGGCGGCCAGCTGTTCAGGTCTCACACGAACTGGAGGTCGTGGCCACTGAGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp CTGTTCGTACTCAGTGGCCACGACCTCCAGTTCGTGTaGGACCTGAACAGCTGGCCGCCCTTGGCGGAGGAG +
Preference number: 6 (lower is better)
Translates to: LFVLSGHDLQFV*DLNSWPPLAEE
Trigger: CTCCTCCGCCAAGGGCGGCCAGCTGTTCAGGTCTCACACGAACTGGAGGTCGTGGCCACTGAGTACGAACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp AGCAAGTTGGAACCTCTTGCTCTCGGCTCACAAGCGTaGCCCACGTTGGCCAAGGTCAGGTGCAGGCGGCCC +
Preference number: 6 (lower is better)
Translates to: SKLEPLALGSQA*PTLAKVRCRRP
Trigger: GGGCCGCCTGCACCTGACCTTGGCCAACGTGGGTCACGCTTGTGAGCCGAGAGCAAGAGGTTCCAACTTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp AGCAGGCCGACCCCCTCCCGGTCGCTGATGAGCAGCTaGACAAGTTCCTCCTCAAACTTCTCCAGGGAAGGG +
Preference number: 6 (lower is better)
Translates to: SRPTPSRSLMSS*TSSSSNFSREG
Trigger: CCCTTCCCTGGAGAAGTTTGAGGAGGAACTTGTGCAGCTGCTCATCAGCGACCGGGAGGGGGTCGGCCTGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AAACAGCCCATCGGACCATGTGCATGCACGCCACGCTaGATATTGAGGTGGGCGAGCTGGCACCGCCATCCG +
Preference number: 6 (lower is better)
Translates to: KQPIGPCACTPR*ILRWASWHRHP
Trigger: CGGATGGCGGTGCCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AGCAGCCAGGTAGTGGGCGAACCAGCGCTGCTCTCCTaGCTTCAGGAACCCGGGATCCACCATGTACCTCAG +
Preference number: 6 (lower is better)
Translates to: SSQVVGEPALLS*LQEPGIHHVPQ
Trigger: CTGAGGTACATGGTGGATCCCGGGTTCCTGAAGCCAGGAGAGCAGCGCTGGTTCGCCCACTACCTGGCTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp ACAGCTGGCCGCCCTTGGCGGAGGAGGTGCTTCATCTaGACGCCAGCAGACCCAATGAGGAGCAAGGAGTCT +
Preference number: 6 (lower is better)
Translates to: TAGRPWRRRCFI*TPADPMRSKES
Trigger: AGACTCCTTGCTCCTCATTGGGTCTGCTGGCGTCCAGATGAAGCACCTCCTCCGCCAAGGGCGGCCAGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AACCTCTTGCTCTCGGCTCACAAGCGTGACCCACGTTaGCCAAGGTCAGGTGCAGGCGGCCCTTCACTACCG +
Preference number: 6 (lower is better)
Translates to: NLLLSAHKRDPR*PRSGAGGPSLP
Trigger: CGGTAGTGAAGGGCCGCCTGCACCTGACCTTGGCCAACGTGGGTCACGCTTGTGAGCCGAGAGCAAGAGGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp CCTGTACCACACGCTTTCGCTTGGGGCCTCCGGGTATaGGGAGGCTTCCCCCAGAGAAGAAGCTGGCTCCAT +
Preference number: 6 (lower is better)
Translates to: PVPHAFAWGLRV*GGFPQRRSWLH
Trigger: ATGGAGCCAGCTTCTTCTCTGGGGGAAGCCTCCTCATACCCGGAGGCCCCAAGCGAAAGCGTGTGGTACAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GAGTGGCCCGTCAAGCCACTTCAGGATGCACTGGAATaGCGTGGACTCCTTCCCAAGCTGCCTCGCTCTCTG +
Preference number: 6 (lower is better)
Translates to: EWPVKPLQDALE*RGLLPKLPRSL
Trigger: CAGAGAGCGAGGCAGCTTGGGAAGGAGTCCACGGCATTCCAGTGCATCCTGAAGTGGCTTGACGGGCCACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GATCGGGGTTCCAAACAGCCCATCGGACCATGTGCATaGACGCCACGCTGGATATTGAGGTGGGCGAGCTGG +
Preference number: 6 (lower is better)
Translates to: DRGSKQPIGPCA*TPRWILRWASW
Trigger: CCAGCTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTTGGAACCCCGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp AGGCATGGCGCTGCACTTCCAAAGGGGTCCAGACTCTaGGTCCTTCTCTGTGATCACCTCAGCAGGGGCCTG +
Preference number: 6 (lower is better)
Translates to: RHGAALPKGSRL*VLLCDHLSRGL
Trigger: CAGGCCCCTGCTGAGGTGATCACAGAGAAGGACGCAGAGTCTGGACCCCTTTGGAAGTGCAGCGCCATGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GAACACGTACTCCAGCTGGAAGACGATGGCGAAGGCTaGGTGACTGACCATCTCCGGGAGTCGCAGGTGGCT +
Preference number: 6 (lower is better)
Translates to: EHVLQLEDDGEG*VTDHLRESQVA
Trigger: AGCCACCTGCGACTCCCGGAGATGGTCAGTCACCCAGCCTTCGCCATCGTCTTCCAGCTGGAGTACGTGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp CTGAACCCCACCCTGAAGAGGCAGCGTCACCTTTCCTaGGCCCACTTCCAGATCGGGGTTCCAAACAGCCCA +
Preference number: 6 (lower is better)
Translates to: LNPTLKRQRHLS*AHFQIGVPNSP
Trigger: TGGGCTGTTTGGAACCCCGATCTGGAAGTGGGCCCAGGAAAGGTGACGCTGCCTCTTCAGGGTGGGGTTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp TGGGGCCGTCTGAGCTCAGTGAGAACTGGAACTGGATaGTTCCGGACTCCACCTGCTTCACCTCCTCGGAGC +
Preference number: 6 (lower is better)
Translates to: WGRLSSVRTGTG*FRTPPASPPRS
Trigger: GCTCCGAGGAGGTGAAGCAGGTGGAGTCCGGAACCATCCAGTTCCAGTTCTCACTGAGCTCAGACGGCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp TACACAGTCTGTGGCCACGGCGTTCCTGGGCAGTCCTaGGCGGCTCTGCTGAAGGCAAGAAACTGCAGCACA +
Preference number: 6 (lower is better)
Translates to: YTVCGHGVPGQS*AALLKARNCST
Trigger: TGTGCTGCAGTTTCTTGCCTTCAGCAGAGCCGCCCAGGACTGCCCAGGAACGCCGTGGCCACAGACTGTGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AACTCAGCGGTGCCCAGTGTAGCGTACAGCGTGTGGTaGGTGGTGATGGCCTGGCTTAGCACTCCGGCAATG +
Preference number: 6 (lower is better)
Translates to: NSAVPSVAYSVW*VVMAWLSTPAM
Trigger: CATTGCCGGAGTGCTAAGCCAGGCCATCACCACCCACCACACGCTGTACGCTACACTGGGCACCGCTGAGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AAGAACTCAGCGGTGCCCAGTGTAGCGTACAGCGTGTaGTGGGTGGTGATGGCCTGGCTTAGCACTCCGGCA +
Preference number: 6 (lower is better)
Translates to: KNSAVPSVAYSV*WVVMAWLSTPA
Trigger: TGCCGGAGTGCTAAGCCAGGCCATCACCACCCACCACACGCTGTACGCTACACTGGGCACCGCTGAGTTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GCCATGGTGATCTCGAAGGCCTTGGAGATGAGTGGCTaGCGGCAGGAGAGGCACACAAGCCATGACGCAACC +
Preference number: 6 (lower is better)
Translates to: AMVISKALEMSG*RQERHTSHDAT
Trigger: GGTTGCGTCATGGCTTGTGTGCCTCTCCTGCCGCCAGCCACTCATCTCCAAGGCCTTCGAGATCACCATGGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 90 bp TTGGTGCCCTTCTCATCCCCTGCTGCCATGGTGATCTCGAAGGCCTaGGAGATGAGTGGCTGGCGGCAGGAGAGGCACACAAGCCATGAC +
Preference number: 6 (lower is better)
Translates to: LVPFSSPAAMVISKA*EMSGWRQERHTSHD
Trigger: GTCATGGCTTGTGTGCCTCTCCTGCCGCCAGCCACTCATCTCCAAGGCCTTCGAGATCACCATGGCAGCAGGGGATGAGAAGGGCACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp GGAGGAGGTGCTTCATCTGGACGCCAGCAGACCCAATaGGGAGCAAGGAGTCTCCATCCCAGACGTCGACCT +
Preference number: 6 (lower is better)
Translates to: GGGASSGRQQTQ*GARSLHPRRRP
Trigger: AGGTCGACGTCTGGGATGGAGACTCCTTGCTCCTCATTGGGTCTGCTGGCGTCCAGATGAAGCACCTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp TGCTCTCGGCCTTGGTACGTTCCCGGTAGGCATCAATaGCCTGCAAGTCCCGTGAGTGCTGTGCACGGACAC +
Preference number: 6 (lower is better)
Translates to: CSRPWYVPGRHQ*PASPVSAVHGH
Trigger: GTGTCCGTGCACAGCACTCACGGGACTTGCAGGTCATTGATGCCTACCGGGAACGTACCAAGGCCGAGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp TCGGCTCACCGGGGCCCACGTTCTGGGCCTCACAGATaGCATTTGGATCACTGCATCGAACATGCACTGGGG +
Preference number: 6 (lower is better)
Translates to: SAHRGPRSGPHR*HLDHCIEHALG
Trigger: CCCCAGTGCATGTTCGATGCAGTGATCCAAATGTCATCTGTGAGGCCCAGAACGTGGGCCCCGGTGAGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp CTTGGCCTCACACCCACATGCAGGTCCTGTACCCCATaGGGTGGCAACACAAAGACACCGGCAGGGTCTGTC +
Preference number: 6 (lower is better)
Translates to: LGLTPTCRSCTP*GGNTKTPAGSV
Trigger: GACAGACCCTGCCGGTGTCTTTGTGTTGCCACCTCATGGGGTACAGGACCTGCATGTGGGTGTGAGGCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp TCCAGATCGGGGTTCCAAACAGCCCATCGGACCATGTaGATGCACGCCACGCTGGATATTGAGGTGGGCGAG +
Preference number: 6 (lower is better)
Translates to: SRSGFQTAHRTM*MHATLDIEVGE
Trigger: CTCGCCCACCTCAATATCCAGCGTGGCGTGCATGCACATGGTCCGATGGGCTGTTTGGAACCCCGATCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp AGCTCTGGAGAGCTGGCTTCTAGAGCTCCTGGTCTGTaGTCCCACGACGATGGGGGCATGCAGAGGAGTGAA +
Preference number: 6 (lower is better)
Translates to: SSGELASRAPGL*SHDDGGMQRSE
Trigger: TTCACTCCTCTGCATGCCCCCATCGTCGTGGGAGCACAGACCAGGAGCTCTAGAAGCCAGCTCTCCAGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp TCTGTGGGGCCGTCTGAGCTCAGTGAGAACTGGAACTaGATGGTTCCGGACTCCACCTGCTTCACCTCCTCG +
Preference number: 6 (lower is better)
Translates to: SVGPSELSENWN*MVPDSTCFTSS
Trigger: CGAGGAGGTGAAGCAGGTGGAGTCCGGAACCATCCAGTTCCAGTTCTCACTGAGCTCAGACGGCCCCACAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GCATGCTCTGTGGGGCCGTCTGAGCTCAGTGAGAACTaGAACTGGATGGTTCCGGACTCCACCTGCTTCACC +
Preference number: 6 (lower is better)
Translates to: ACSVGPSELSEN*NWMVPDSTCFT
Trigger: GGTGAAGCAGGTGGAGTCCGGAACCATCCAGTTCCAGTTCTCACTGAGCTCAGACGGCCCCACAGAGCATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GAAGACTGCAGAAGCACCATCGCAGCTCTGGAGAGCTaGCTTCTAGAGCTCCTGGTCTGTGCTCCCACGACG +
Preference number: 6 (lower is better)
Translates to: EDCRSTIAALES*LLELLVCAPTT
Trigger: CGTCGTGGGAGCACAGACCAGGAGCTCTAGAAGCCAGCTCTCCAGAGCTGCGATGGTGCTTCTGCAGTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp TGCAAGTCCCGTGAGTGCTGTGCACGGACACTGTGTTaGGCCAGCAAGCTGATCCTGCGACTGTCAGAGTCC +
Preference number: 6 (lower is better)
Translates to: CKSRECCARTLC*ASKLILRLSES
Trigger: GGACTCTGACAGTCGCAGGATCAGCTTGCTGGCCCAACACAGTGTCCGTGCACAGCACTCACGGGACTTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AGTGTAGCGTACAGCGTGTGGTGGGTGGTGATGGCCTaGCTTAGCACTCCGGCAATGCTCTCGGCCTTGGTA +
Preference number: 6 (lower is better)
Translates to: SVAYSVWWVVMA*LSTPAMLSALV
Trigger: TACCAAGGCCGAGAGCATTGCCGGAGTGCTAAGCCAGGCCATCACCACCCACCACACGCTGTACGCTACACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp ACGTTCCCGGTAGGCATCAATGACCTGCAAGTCCCGTaGGTGCTGTGCACGGACACTGTGTTGGGCCAGCAA +
Preference number: 6 (lower is better)
Translates to: TFPVGINDLQVP*VLCTDTVLGQQ
Trigger: TTGCTGGCCCAACACAGTGTCCGTGCACAGCACTCACGGGACTTGCAGGTCATTGATGCCTACCGGGAACGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp ACTTCCAAAGGGGTCCAGACTCTGCGTCCTTCTCTGTaGTCACCTCAGCAGGGGCCTGTGTCGGAGCAAGAG +
Preference number: 6 (lower is better)
Translates to: TSKGVQTLRPSL*SPQQGPVSEQE
Trigger: CTCTTGCTCCGACACAGGCCCCTGCTGAGGTGATCACAGAGAAGGACGCAGAGTCTGGACCCCTTTGGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp GGTAGGTCCTCCGAGAAGGATAGGGGTTGGTGTAGGTaGTGCGCTTGTTGGTGCCCTTCTCATCCCCTGCTG +
Preference number: 6 (lower is better)
Translates to: GRSSEKDRGWCR*CACWCPSHPLL
Trigger: CAGCAGGGGATGAGAAGGGCACCAACAAGCGCATCACCTACACCAACCCCTATCCTTCTCGGAGGACCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp AAGATGCGAAGAATTCCAAACCCACAGGACAGCAGCTaGAGGGTGCCGTCCCTCTTCCTGCCTTCGGTGACC +
Preference number: 6 (lower is better)
Translates to: KMRRIPNPQDSS*RVPSLFLPSVT
Trigger: GGTCACCGAAGGCAGGAAGAGGGACGGCACCCTGCAGCTGCTGTCCTGTGGGTTTGGAATTCTTCGCATCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp TGGCTGGCATCAAGGATCTCGGGGAAGCCAGAAGACTaGAGAAGCACCATCGCAGCTCTGGAGAGCTGGCTT +
Preference number: 6 (lower is better)
Translates to: WLASRISGKPED*RSTIAALESWL
Trigger: AAGCCAGCTCTCCAGAGCTGCGATGGTGCTTCTGCAGTCTTCTGGCTTCCCCGAGATCCTTGATGCCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GGGCAGTCCTGGGCGGCTCTGCTGAAGGCAAGAAACTaGAGCACAATCTCATTCCCTCGAAGACAGTCCGAC +
Preference number: 6 (lower is better)
Translates to: GQSWAALLKARN*STISFPRRQSD
Trigger: GTCGGACTGTCTTCGAGGGAATGAGATTGTGCTGCAGTTTCTTGCCTTCAGCAGAGCCGCCCAGGACTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GGTGATGCGCTTGTTGGTGCCCTTCTCATCCCCTGCTaGCATGGTGATCTCGAAGGCCTTGGAGATGAGTGG +
Preference number: 6 (lower is better)
Translates to: GDALVGALLIPC*HGDLEGLGDEW
Trigger: CCACTCATCTCCAAGGCCTTCGAGATCACCATGGCAGCAGGGGATGAGAAGGGCACCAACAAGCGCATCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GAAGGTGAAATACACAGTCTGTGGCCACGGCGTTCCTaGGCAGTCCTGGGCGGCTCTGCTGAAGGCAAGAAA +
Preference number: 6 (lower is better)
Translates to: EGEIHSLWPRRS*AVLGGSAEGKK
Trigger: TTTCTTGCCTTCAGCAGAGCCGCCCAGGACTGCCCAGGAACGCCGTGGCCACAGACTGTGTATTTCACCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp ACCGGGGCCCACGTTCTGGGCCTCACAGATGACATTTaGATCACTGCATCGAACATGCACTGGGGGATCCTC +
Preference number: 6 (lower is better)
Translates to: TGAHVLGLTDDI*ITASNMHWGIL
Trigger: GAGGATCCCCCAGTGCATGTTCGATGCAGTGATCCAAATGTCATCTGTGAGGCCCAGAACGTGGGCCCCGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp CCTCACACCCACATGCAGGTCCTGTACCCCATGAGGTaGCAACACAAAGACACCGGCAGGGTCTGTCTTCAG +
Preference number: 6 (lower is better)
Translates to: PHTHMQVLYPMR*QHKDTGRVCLQ
Trigger: CTGAAGACAGACCCTGCCGGTGTCTTTGTGTTGCCACCTCATGGGGTACAGGACCTGCATGTGGGTGTGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 90 bp TGTTCTGTTCTATGGGATCCTGGAGAAGTGGGTGCAGGAGGGCTCTaGGGGTGCCATGATACAGCCTCAACCGTTTGTCCTGGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: CSVLWDPGEVGAGGL*GCHDTASTVCPGLQ
Trigger: CTGCAGCCCAGGACAAACGGTTGAGGCTGTATCATGGCACCCCAAGAGCCCTCCTGCACCCACTTCTCCAGGATCCCATAGAACAGAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GCCTCACAGATGACATTTGGATCACTGCATCGAACATaGACTGGGGGATCCTCGCCAGGCATCCCCACAGGA +
Preference number: 6 (lower is better)
Translates to: ASQMTFGSLHRT*TGGSSPGIPTG
Trigger: TCCTGTGGGGATGCCTGGCGAGGATCCCCCAGTGCATGTTCGATGCAGTGATCCAAATGTCATCTGTGAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS GCA 72 bp GTAGGTGATGCGCTTGTTGGTGCCCTTCTCATCCCCTaGTGCCATGGTGATCTCGAAGGCCTTGGAGATGAG +
Preference number: 6 (lower is better)
Translates to: VGDALVGALLIP*CHGDLEGLGDE
Trigger: CTCATCTCCAAGGCCTTCGAGATCACCATGGCAGCAGGGGATGAGAAGGGCACCAACAAGCGCATCACCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp TCGGTGACCACTTCTACCACAGCCACGATGCTGGGGTaGCTCAAGGTCGTGTGGAAGTACAAGGGCTCATTG +
Preference number: 6 (lower is better)
Translates to: SVTTSTTATMLG*LKVVWKYKGSL
Trigger: CAATGAGCCCTTGTACTTCCACACGACCTTGAGCCACCCCAGCATCGTGGCTGTGGTAGAAGTGGTCACCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp GAAACGGTAAAACTGGAAGGTGAAATACACAGTCTGTaGCCACGGCGTTCCTGGGCAGTCCTGGGCGGCTCT +
Preference number: 6 (lower is better)
Translates to: ETVKLEGEIHSL*PRRSWAVLGGS
Trigger: AGAGCCGCCCAGGACTGCCCAGGAACGCCGTGGCCACAGACTGTGTATTTCACCTTCCAGTTTTACCGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp TCAAAGGAGCCATCTTTATTAATGGGGACGAGGATGTaGGACAGGGAGCCAGAGCCGCTCTTGCCCGTCCCA +
Preference number: 6 (lower is better)
Translates to: SKEPSLLMGTRM*DREPEPLLPVP
Trigger: TGGGACGGGCAAGAGCGGCTCTGGCTCCCTGTCCCACATCCTCGTCCCCATTAATAAAGATGGCTCCTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AGGAACACATCTCTCGGCTCACCGGGGCCCACGTTCTaGGCCTCACAGATGACATTTGGATCACTGCATCGA +
Preference number: 6 (lower is better)
Translates to: RNTSLGSPGPTF*ASQMTFGSLHR
Trigger: TCGATGCAGTGATCCAAATGTCATCTGTGAGGCCCAGAACGTGGGCCCCGGTGAGCCGAGAGATGTGTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp ACCACAGCCACGATGCTGGGGTGGCTCAAGGTCGTGTaGAAGTACAAGGGCTCATTGAAGGTGATCCTAGGT +
Preference number: 6 (lower is better)
Translates to: TTATMLGWLKVV*KYKGSLKVILG
Trigger: ACCTAGGATCACCTTCAATGAGCCCTTGTACTTCCACACGACCTTGAGCCACCCCAGCATCGTGGCTGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp CAGCTTGACCAGCTGCAGGCGTGGCGTGGTCTCGGGTaGGAAACGGTAAAACTGGAAGGTGAAATACACAGT +
Preference number: 6 (lower is better)
Translates to: QLDQLQAWRGLG*ETVKLEGEIHS
Trigger: ACTGTGTATTTCACCTTCCAGTTTTACCGTTTCCCACCCGAGACCACGCCACGCCTGCAGCTGGTCAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp AACACAAAGACACCGGCAGGGTCTGTCTTCAGCTCCTaGGGGTGGGAGGTGAAAGCTCTCACTTTCCTAACG +
Preference number: 6 (lower is better)
Translates to: NTKTPAGSVFSS*GWEVKALTFLT
Trigger: CGTTAGGAAAGTGAGAGCTTTCACCTCCCACCCCCAGGAGCTGAAGACAGACCCTGCCGGTGTCTTTGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp CACAGAATGTCTCCTCATTCTTGTCCTCGTGGTCATTaGTGTAGATCAGGATCTCCTCCTGCCCGGCGCTGC +
Preference number: 6 (lower is better)
Translates to: HRMSPHSCPRGH*CRSGSPPARRC
Trigger: GCAGCGCCGGGCAGGAGGAGATCCTGATCTACATCAATGACCACGAGGACAAGAATGAGGAGACATTCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 90 bp CTCAACCGTTTGTCCTGGGCTGCAGAGGTGGGAGATTCTGGCTTATaGCCAAAGATGCGAAGAATTCCAAACCCACAGGACAGCAGCTGC +
Preference number: 6 (lower is better)
Translates to: LNRLSWAAEVGDSGL*PKMRRIPNPQDSSC
Trigger: GCAGCTGCTGTCCTGTGGGTTTGGAATTCTTCGCATCTTTGGCAATAAGCCAGAATCTCCCACCTCTGCAGCCCAGGACAAACGGTTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp AGCTCAGGGCTGTCGATCTCGATGGCCACCGTGTGCTaGGTGTTGTGTGGGTTTTTAAGTGCAAACTCGAAG +
Preference number: 6 (lower is better)
Translates to: SSGLSISMATVC*VLCGFLSANSK
Trigger: CTTCGAGTTTGCACTTAAAAACCCACACAACACTCAGCACACGGTGGCCATCGAGATCGACAGCCCTGAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp TCATTGAAGGTGATCCTAGGTGGCTGCTTAGAGGGTTaGTTGGTGGGCTTCACTGTGGTTTTCCACGTCCTC +
Preference number: 6 (lower is better)
Translates to: SLKVILGGCLEG*LVGFTVVFHVL
Trigger: GAGGACGTGGAAAACCACAGTGAAGCCCACCAATCAACCCTCTAAGCAGCCACCTAGGATCACCTTCAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp CTCATTGAAGGTGATCCTAGGTGGCTGCTTAGAGGGTaGATTGGTGGGCTTCACTGTGGTTTTCCACGTCCT +
Preference number: 6 (lower is better)
Translates to: LIEGDPRWLLRG*IGGLHCGFPRP
Trigger: AGGACGTGGAAAACCACAGTGAAGCCCACCAATCAACCCTCTAAGCAGCCACCTAGGATCACCTTCAATGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CCA 72 bp ATAGATGACGACAAAGAAGTCTTTGATCTCCGGGCTTaGACCACTGGCCACCTTAAGGAACACATCTCTCGG +
Preference number: 6 (lower is better)
Translates to: IDDDKEVFDLRA*TTGHLKEHISR
Trigger: CCGAGAGATGTGTTCCTTAAGGTGGCCAGTGGTCCAAGCCCGGAGATCAAAGACTTCTTTGTCGTCATCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp GGGTGTACTGCAGGCTACAATTCTCCATCAGCCTCATaGACTTGTTCTGTTCTATGGGATCCTGGAGAAGTG +
Preference number: 6 (lower is better)
Translates to: GCTAGYNSPSAS*TCSVLWDPGEV
Trigger: CACTTCTCCAGGATCCCATAGAACAGAACAAGTTCATGAGGCTGATGGAGAATTGTAGCCTGCAGTACACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS CAA 72 bp TACTGCAGGCTACAATTCTCCATCAGCCTCATGAACTaGTTCTGTTCTATGGGATCCTGGAGAAGTGGGTGC +
Preference number: 6 (lower is better)
Translates to: YCRLQFSISLMN*FCSMGSWRSGC
Trigger: GCACCCACTTCTCCAGGATCCCATAGAACAGAACAAGTTCATGAGGCTGATGGAGAATTGTAGCCTGCAGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10
CDS TCA 72 bp TGGTTTTCCACGTCCTCCCAAAGAAATGTTTGTAGGTaGCATCGAAGAGGGTCACTCGCAGATGGCATTCAA +
Preference number: 6 (lower is better)
Translates to: WFSTSSQRNVCR*HRRGSLADGIQ
Trigger: TTGAATGCCATCTGCGAGTGACCCTCTTCGATGTCACCTACAAACATTTCTTTGGGAGGACGTGGAAAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000056567.6
ENSMUST00000081393.10