Pregenerated sensors for NPFF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023052Ensembl transcript IDs: ENSMUST00000023814.9
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TCCTTGCTCCAGGACCCCCATGCACTTCTGCCAAACCTCTGGGGCTaGAACAGGAAGGCTGGGCTCCTTCTAGGTGTGTCCATGGCCTGG | + |
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Preference number: 5 (lower is better) Translates to: SLLQDPHALLPNLWG*NRKAGLLLGVSMAW Trigger: CCAGGCCATGGACACACCTAGAAGGAGCCCAGCCTTCCTGTTTCAGCCCCAGAGGTTTGGCAGAAGTGCATGGGGGTCCTGGAGCAAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS GCA 90 bp | CGGCCAGGCTCCAGAACTGTCTGGCCTGCGGATTTAGCTGTTCCTTaGTCCAGGACCCCCATGCACTTCTGCCAAACCTCTGGGGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: RPGSRTVWPADLAVP*SRTPMHFCQTSGAE Trigger: TTCAGCCCCAGAGGTTTGGCAGAAGTGCATGGGGGTCCTGGAGCAAGGAACAGCTAAATCCGCAGGCCAGACAGTTCTGGAGCCTGGCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 90 bp | CCTGCAAAGACTTGGTCTTCACCCCAGCTCCCTGCCTCTTCAGTGTaGCCCCAATTCAGCAGCAGCAGTAGCAGCAGCAGCAGAGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: PAKTWSSPQLPASSV*PQFSSSSSSSSRAA Trigger: GGCTGCTCTGCTGCTGCTGCTACTGCTGCTGCTGAATTGGGGCCACACTGAAGAGGCAGGGAGCTGGGGTGAAGACCAAGTCTTTGCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 90 bp | GTGTCCATGGCCTGGAGCAGAACACGAAAGAGGGACCCAGGAGTCTaGATCCTGTCTGGAATGTGGGCATACTGTGGTGGGTGGGGTCCC | + |
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Preference number: 5 (lower is better) Translates to: VSMAWSRTRKRDPGV*ILSGMWAYCGGWGP Trigger: GGGACCCCACCCACCACAGTATGCCCACATTCCAGACAGGATCCAGACTCCTGGGTCCCTCTTTCGTGTTCTGCTCCAGGCCATGGACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 90 bp | ACTTCTTCCCAAAGCGCTGAGGAGCGGCCAGGCTCCAGAACTGTCTaGCCTGCGGATTTAGCTGTTCCTTGCTCCAGGACCCCCATGCAC | + |
|
Preference number: 5 (lower is better) Translates to: TSSQSAEERPGSRTV*PADLAVPCSRTPMH Trigger: GTGCATGGGGGTCCTGGAGCAAGGAACAGCTAAATCCGCAGGCCAGACAGTTCTGGAGCCTGGCCGCTCCTCAGCGCTTTGGGAAGAAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 90 bp | CTGGAGCAGAACACGAAAGAGGGACCCAGGAGTCTGGATCCTGTCTaGAATGTGGGCATACTGTGGTGGGTGGGGTCCCTTATCTTCTCC | + |
|
Preference number: 5 (lower is better) Translates to: LEQNTKEGPRSLDPV*NVGILWWVGSLIFS Trigger: GGAGAAGATAAGGGACCCCACCCACCACAGTATGCCCACATTCCAGACAGGATCCAGACTCCTGGGTCCCTCTTTCGTGTTCTGCTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS GCA 90 bp | TGGAATGTGGGCATACTGTGGTGGGTGGGGTCCCTTATCTTCTCCTaGAAAGACTTGGTCTTCACCCCAGCTCCCTGCCTCTTCAGTGTG | + |
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Preference number: 5 (lower is better) Translates to: WNVGILWWVGSLIFS*KDLVFTPAPCLFSV Trigger: CACACTGAAGAGGCAGGGAGCTGGGGTGAAGACCAAGTCTTTGCAGGAGAAGATAAGGGACCCCACCCACCACAGTATGCCCACATTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 90 bp | GAGGGACCCAGGAGTCTGGATCCTGTCTGGAATGTGGGCATACTGTaGTGGGTGGGGTCCCTTATCTTCTCCTGCAAAGACTTGGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: EGPRSLDPVWNVGIL*WVGSLIFSCKDLVF Trigger: GAAGACCAAGTCTTTGCAGGAGAAGATAAGGGACCCCACCCACCACAGTATGCCCACATTCCAGACAGGATCCAGACTCCTGGGTCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 72 bp | CAAAGCGCTGAGGAGCGGCCAGGCTCCAGAACTGTCTaGCCTGCGGATTTAGCTGTTCCTTGCTCCAGGACC | + |
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Preference number: 6 (lower is better) Translates to: QSAEERPGSRTV*PADLAVPCSRT Trigger: GGTCCTGGAGCAAGGAACAGCTAAATCCGCAGGCCAGACAGTTCTGGAGCCTGGCCGCTCCTCAGCGCTTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS TCA 72 bp | CAGGACCCCCATGCACTTCTGCCAAACCTCTGGGGCTaGAACAGGAAGGCTGGGCTCCTTCTAGGTGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: QDPHALLPNLWG*NRKAGLLLGVS Trigger: GGACACACCTAGAAGGAGCCCAGCCTTCCTGTTTCAGCCCCAGAGGTTTGGCAGAAGTGCATGGGGGTCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 72 bp | ACTTGGTCTTCACCCCAGCTCCCTGCCTCTTCAGTGTaGCCCCAATTCAGCAGCAGCAGTAGCAGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: TWSSPQLPASSV*PQFSSSSSSSS Trigger: GCTGCTGCTGCTACTGCTGCTGCTGAATTGGGGCCACACTGAAGAGGCAGGGAGCTGGGGTGAAGACCAAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 72 bp | AGGAAGGCTGGGCTCCTTCTAGGTGTGTCCATGGCCTaGAGCAGAACACGAAAGAGGGACCCAGGAGTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: RKAGLLLGVSMA*SRTRKRDPGVW Trigger: CCAGACTCCTGGGTCCCTCTTTCGTGTTCTGCTCCAGGCCATGGACACACCTAGAAGGAGCCCAGCCTTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS GCA 72 bp | GGCATACTGTGGTGGGTGGGGTCCCTTATCTTCTCCTaGAAAGACTTGGTCTTCACCCCAGCTCCCTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: GILWWVGSLIFS*KDLVFTPAPCL Trigger: GAGGCAGGGAGCTGGGGTGAAGACCAAGTCTTTGCAGGAGAAGATAAGGGACCCCACCCACCACAGTATGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS GCA 72 bp | TTCTCCTGCAAAGACTTGGTCTTCACCCCAGCTCCCTaGCTCTTCAGTGTGGCCCCAATTCAGCAGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: FSCKDLVFTPAP*LFSVAPIQQQQ Trigger: CTGCTGCTGCTGAATTGGGGCCACACTGAAGAGGCAGGGAGCTGGGGTGAAGACCAAGTCTTTGCAGGAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 72 bp | AACACGAAAGAGGGACCCAGGAGTCTGGATCCTGTCTaGAATGTGGGCATACTGTGGTGGGTGGGGTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: NTKEGPRSLDPV*NVGILWWVGSL Trigger: AAGGGACCCCACCCACCACAGTATGCCCACATTCCAGACAGGATCCAGACTCCTGGGTCCCTCTTTCGTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CAA 72 bp | CTCCAGAACTGTCTGGCCTGCGGATTTAGCTGTTCCTaGCTCCAGGACCCCCATGCACTTCTGCCAAACCTC | + |
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Preference number: 6 (lower is better) Translates to: LQNCLACGFSCS*LQDPHALLPNL Trigger: GAGGTTTGGCAGAAGTGCATGGGGGTCCTGGAGCAAGGAACAGCTAAATCCGCAGGCCAGACAGTTCTGGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS GCA 72 bp | TCCAGAACTGTCTGGCCTGCGGATTTAGCTGTTCCTTaGTCCAGGACCCCCATGCACTTCTGCCAAACCTCT | + |
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Preference number: 6 (lower is better) Translates to: SRTVWPADLAVP*SRTPMHFCQTS Trigger: AGAGGTTTGGCAGAAGTGCATGGGGGTCCTGGAGCAAGGAACAGCTAAATCCGCAGGCCAGACAGTTCTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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| CDS CCA 72 bp | TGGATCCTGTCTGGAATGTGGGCATACTGTGGTGGGTaGGGTCCCTTATCTTCTCCTGCAAAGACTTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: WILSGMWAYCGG*GPLSSPAKTWS Trigger: AGACCAAGTCTTTGCAGGAGAAGATAAGGGACCCCACCCACCACAGTATGCCCACATTCCAGACAGGATCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023814.9 |
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