Pregenerated sensors for NPCD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000089837Ensembl transcript IDs: ENSMUST00000023060.13, ENSMUST00000089299.6
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GCAGGGGACGGCGAGACATACGGTGGCAGCGGCGGATGTCTTTCTTaGGCCGGTGCACCGCAGCGCTGGAGTGCAGCTTGGGCGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: AGDGETYGGSGGCLS*AGAPQRWSAAWARR Trigger: CCTCCTCGCCCAAGCTGCACTCCAGCGCTGCGGTGCACCGGCTCAAGAAAGACATCCGCCGCTGCCACCGTATGTCTCGCCGTCCCCTGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS GCA 90 bp | GCTGGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTGGGAGCTCCTaGTTCAGGTTCAGGATGATGCGGTTCCGCTTGGGCTCCCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: AGAGAEEMFPRAGSS*FRFRMMRFRLGSRG Trigger: GCCCCGGGAGCCCAAGCGGAACCGCATCATCCTGAACCTGAAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 90 bp | CCCCCTTGTGGGTCTGGTCGTGGCAGGGGACGGCGAGACATACGGTaGCAGCGGCGGATGTCTTTCTTGAGCCGGTGCACCGCAGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: PPCGSGRGRGRRDIR*QRRMSFLSRCTAAL Trigger: CAGCGCTGCGGTGCACCGGCTCAAGAAAGACATCCGCCGCTGCCACCGTATGTCTCGCCGTCCCCTGCCACGACCAGACCCACAAGGGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 90 bp | CCAGCAGCTGGCCTTCTAGTTCGTCCATCTTGGAGTGCAGGGCGGTaGGCATGGCTGGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: PAAGLLVRPSWSAGR*AWLELAPRRCSHGL Trigger: CAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGCCATGCCCACCGCCCTGCACTCCAAGATGGACGAACTAGAAGGCCAGCTGCTGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 90 bp | GGTGGGCATGGCTGGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTaGGAGCTCCTGCTTCAGGTTCAGGATGATGCGGTTCCGCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: GGHGWSWRRGDVPTG*ELLLQVQDDAVPLG Trigger: CCCAAGCGGAACCGCATCATCCTGAACCTGAAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGCCATGCCCACC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 90 bp | TATCTTCCCAGGGGAGGACATTGCCCATCAGTGGCCCGGTGCAGTTaGCCATGCCCAGCACCTGGGCCGGTGTCAGAGCGTGGTCCCACA | + |
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Preference number: 5 (lower is better) Translates to: YLPRGGHCPSVARCS*PCPAPGPVSERGPT Trigger: TGTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 90 bp | GGCCTCTACCAGCTTATCTTCCCAGGGGAGGACATTGCCCATCAGTaGCCCGGTGCAGTTGGCCATGCCCAGCACCTGGGCCGGTGTCAG | + |
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Preference number: 5 (lower is better) Translates to: GLYQLIFPGEDIAHQ*PGAVGHAQHLGRCQ Trigger: CTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAAGCTGGTAGAGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 90 bp | CCGGTGCAGTTGGCCATGCCCAGCACCTGGGCCGGTGTCAGAGCGTaGTCCCACAGGTTGAACTGTGCAATGTCACCAACGAAGGCCTGT | + |
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Preference number: 5 (lower is better) Translates to: PVQLAMPSTWAGVRA*SHRLNCAMSPTKAC Trigger: ACAGGCCTTCGTTGGTGACATTGCACAGTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 90 bp | ACATTGCCCATCAGTGGCCCGGTGCAGTTGGCCATGCCCAGCACCTaGGCCGGTGTCAGAGCGTGGTCCCACAGGTTGAACTGTGCAATG | + |
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Preference number: 5 (lower is better) Translates to: TLPISGPVQLAMPST*AGVRAWSHRLNCAM Trigger: CATTGCACAGTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS GCA 90 bp | GCTGGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTGGGAGCTCCTaGTTTAGGAGGAAAGTTTTGGGTTTAGGTCCCCTCTTCTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: AGAGAEEMFPRAGSS*FRRKVLGLGPLFLG Trigger: GCCCAAGAAGAGGGGACCTAAACCCAAAACTTTCCTCCTAAAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023060.13 |
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| CDS CCA 90 bp | TGCCAGGCTGCTAGGTTCTCGCCAGAACCCCGCAGTTCTCCGTCCTaGTATGCAGACCACAGCCCATCCCTTGTAGTCCAGGAGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: CQAARFSPEPRSSPS*YADHSPSLVVQEMQ Trigger: CTGCATCTCCTGGACTACAAGGGATGGGCTGTGGTCTGCATACCAGGACGGAGAACTGCGGGGTTCTGGCGAGAACCTAGCAGCCTGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS GCA 72 bp | GGCGAGGAGGCGCTGGCGCTCGGCTTGACAGAGAAATaGACATCACTGATGCGGAGGGCCTCCGCCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: GEEALALGLTEK*TSLMRRASAWA Trigger: GGCCCAGGCGGAGGCCCTCCGCATCAGTGATGTGCATTTCTCTGTCAAGCCGAGCGCCAGCGCCTCCTCGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 72 bp | CATCTTGGAGTGCAGGGCGGTGGGCATGGCTGGAGCTaGCGCCGAGGAGATGTTCCCACGGGCTGGGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: HLGVQGGGHGWS*RRGDVPTGWEL Trigger: GAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGCCATGCCCACCGCCCTGCACTCCAAGATG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS GCA 72 bp | ATGTCTTTCTTGAGCCGGTGCACCGCAGCGCTGGAGTaGAGCTTGGGCGAGGAGGCGCTGGCGCTCGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: MSFLSRCTAALE*SLGEEALALGL Trigger: CAAGCCGAGCGCCAGCGCCTCCTCGCCCAAGCTGCACTCCAGCGCTGCGGTGCACCGGCTCAAGAAAGACAT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 72 bp | TTCGTCCATCTTGGAGTGCAGGGCGGTGGGCATGGCTaGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: FVHLGVQGGGHG*SWRRGDVPTGW Trigger: CCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGCCATGCCCACCGCCCTGCACTCCAAGATGGACGAA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS GCA 72 bp | ATACGGTGGCAGCGGCGGATGTCTTTCTTGAGCCGGTaGACCGCAGCGCTGGAGTGCAGCTTGGGCGAGGAG | + |
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Preference number: 6 (lower is better) Translates to: IRWQRRMSFLSR*TAALECSLGEE Trigger: CTCCTCGCCCAAGCTGCACTCCAGCGCTGCGGTGCACCGGCTCAAGAAAGACATCCGCCGCTGCCACCGTAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 72 bp | ATCAGTGGCCCGGTGCAGTTGGCCATGCCCAGCACCTaGGCCGGTGTCAGAGCGTGGTCCCACAGGTTGAAC | + |
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Preference number: 6 (lower is better) Translates to: ISGPVQLAMPST*AGVRAWSHRLN Trigger: GTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGAT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 72 bp | GGCCTTCTAGTTCGTCCATCTTGGAGTGCAGGGCGGTaGGCATGGCTGGAGCTGGCGCCGAGGAGATGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GLLVRPSWSAGR*AWLELAPRRCS Trigger: GGAACATCTCCTCGGCGCCAGCTCCAGCCATGCCCACCGCCCTGCACTCCAAGATGGACGAACTAGAAGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 72 bp | CAGCTTATCTTCCCAGGGGAGGACATTGCCCATCAGTaGCCCGGTGCAGTTGGCCATGCCCAGCACCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: QLIFPGEDIAHQ*PGAVGHAQHLG Trigger: GCCCAGGTGCTGGGCATGGCCAACTGCACCGGGCCACTGATGGGCAATGTCCTCCCCTGGGAAGATAAGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 72 bp | GGCTGGAGCTGGCGCCGAGGAGATGTTCCCACGGGCTaGGAGCTCCTGCTTCAGGTTCAGGATGATGCGGTT | + |
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Preference number: 6 (lower is better) Translates to: GWSWRRGDVPTG*ELLLQVQDDAV Trigger: AACCGCATCATCCTGAACCTGAAGCAGGAGCTCCCAGCCCGTGGGAACATCTCCTCGGCGCCAGCTCCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CAA 90 bp | CGGGCTGGGAGCTCCTGCTTCAGGTTCAGGATGATGCGGTTCCGCTaGGGCTCCCGGGGCTTCACCTTACGGTTGATGATGCGCACGGTC | + |
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Preference number: 6 (lower is better) Translates to: RAGSSCFRFRMMRFR*GSRGFTLRLMMRTV Trigger: GACCGTGCGCATCATCAACCGTAAGGTGAAGCCCCGGGAGCCCAAGCGGAACCGCATCATCCTGAACCTGAAGCAGGAGCTCCCAGCCCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 72 bp | TTGGCCATGCCCAGCACCTGGGCCGGTGTCAGAGCGTaGTCCCACAGGTTGAACTGTGCAATGTCACCAACG | + |
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Preference number: 6 (lower is better) Translates to: LAMPSTWAGVRA*SHRLNCAMSPT Trigger: CGTTGGTGACATTGCACAGTTCAACCTGTGGGACCACGCTCTGACACCGGCCCAGGTGCTGGGCATGGCCAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CCA 72 bp | GCTAGGTTCTCGCCAGAACCCCGCAGTTCTCCGTCCTaGTATGCAGACCACAGCCCATCCCTTGTAGTCCAG | + |
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Preference number: 6 (lower is better) Translates to: ARFSPEPRSSPS*YADHSPSLVVQ Trigger: CTGGACTACAAGGGATGGGCTGTGGTCTGCATACCAGGACGGAGAACTGCGGGGTTCTGGCGAGAACCTAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CAA 72 bp | AGCTCCTGCTTCAGGTTCAGGATGATGCGGTTCCGCTaGGGCTCCCGGGGCTTCACCTTACGGTTGATGATG | + |
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Preference number: 6 (lower is better) Translates to: SSCFRFRMMRFR*GSRGFTLRLMM Trigger: CATCATCAACCGTAAGGTGAAGCCCCGGGAGCCCAAGCGGAACCGCATCATCCTGAACCTGAAGCAGGAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089299.6 |
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| CDS CCA 72 bp | CACAGCCCATCCCTTGTAGTCCAGGAGATGCAGATATaGTGCCAGTTGCTGTCTTTCAGGCTCAGGGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: HSPSLVVQEMQI*CQLLSFRLRGS Trigger: GCTGCCCCTGAGCCTGAAAGACAGCAACTGGCACCATATCTGCATCTCCTGGACTACAAGGGATGGGCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023060.13 ENSMUST00000089299.6 |
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| CDS CAA 72 bp | CCACGGGCTGGGAGCTCCTGCTTTAGGAGGAAAGTTTaGGGTTTAGGTCCCCTCTTCTTGGGCCCATACAGC | + |
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Preference number: 6 (lower is better) Translates to: PRAGSSCFRRKV*GLGPLFLGPYS Trigger: GCTGTATGGGCCCAAGAAGAGGGGACCTAAACCCAAAACTTTCCTCCTAAAGCAGGAGCTCCCAGCCCGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023060.13 |
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| CDS CAA 90 bp | GAGATGTTCCCACGGGCTGGGAGCTCCTGCTTTAGGAGGAAAGTTTaGGGTTTAGGTCCCCTCTTCTTGGGCCCATACAGCTCACGTTCC | + |
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Preference number: 6 (lower is better) Translates to: EMFPRAGSSCFRRKV*GLGPLFLGPYSSRS Trigger: GGAACGTGAGCTGTATGGGCCCAAGAAGAGGGGACCTAAACCCAAAACTTTCCTCCTAAAGCAGGAGCTCCCAGCCCGTGGGAACATCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023060.13 |
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