Pregenerated sensors for NPC2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021242Ensembl transcript IDs: ENSMUST00000021668.10
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACCCCCAGGCAGCCAGAAGACTCTGGGAAGCCATCCTTCACAGTaGATCCATAGCCCTGGGTCAAGTTATCTGACATCCCTAAGCAAC | + |
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Preference number: 1 (lower is better) Translates to: TPPGSQKTLGSHPSQ*IHSPGSSYLTSLSN Trigger: GTTGCTTAGGGATGTCAGATAACTTGACCCAGGGCTATGGATCCACTGTGAAGGATGGCTTCCCAGAGTCTTCTGGCTGCCTGGGGGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 90 bp | GGCAAGAAGAATCTGTTGGGAAAAGGGAGTCAGCAAACACAGAAGTaGGTTTCTCCTGGCCCCTCAGCAAGCTCCCACACAGACGATAGC | + |
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Preference number: 1 (lower is better) Translates to: GKKNLLGKGSQQTQK*VSPGPSASSHTDDS Trigger: GCTATCGTCTGTGTGGGAGCTTGCTGAGGGGCCAGGAGAAACTCACTTCTGTGTTTGCTGACTCCCTTTTCCCAACAGATTCTTCTTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR GCA 90 bp | TGTCGGCTTGGGCCTACTTCTTTATTTAAATGGATCTCACTATGCTaGCACTCGGACTGGCCTGGAACTCACATCCCTCCTGCCTCCATA | + |
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Preference number: 1 (lower is better) Translates to: CRLGPTSLFKWISLC*HSDWPGTHIPPASI Trigger: TATGGAGGCAGGAGGGATGTGAGTTCCAGGCCAGTCCGAGTGGCAGCATAGTGAGATCCATTTAAATAAAGAAGTAGGCCCAAGCCGACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR GCA 90 bp | GCCTCAGATTCCTGTAAGGGAAGAGTGGGTCTAAGACTCAAGGTTTaGACAGAGACAGGCAGTAGAAAACACGGGGCCCTTTGTATGCTT | + |
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Preference number: 1 (lower is better) Translates to: ASDSCKGRVGLRLKV*TETGSRKHGALCML Trigger: AAGCATACAAAGGGCCCCGTGTTTTCTACTGCCTGTCTCTGTGCAAACCTTGAGTCTTAGACCCACTCTTCCCTTACAGGAATCTGAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 90 bp | TACTTTTGGAGTTCACATGATTCTGACTCATATGGGAAGATAGGGTaGGCTCAGGGTGAAAGGATACACAAAAGACCTCTGTACAGTGGG | + |
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Preference number: 1 (lower is better) Translates to: YFWSSHDSDSYGKIG*AQGERIHKRPLYSG Trigger: CCCACTGTACAGAGGTCTTTTGTGTATCCTTTCACCCTGAGCCCACCCTATCTTCCCATATGAGTCAGAATCATGTGAACTCCAAAAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 90 bp | TCCCTACCAAAAACTATGATCCATGACCATACCTGTCAGTCATCTTaGGATATAGTAAAGGGAACTGTTATCTGCTATGATGTTCTCTCT | + |
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Preference number: 1 (lower is better) Translates to: SLPKTMIHDHTCQSS*DIVKGTVICYDVLS Trigger: AGAGAGAACATCATAGCAGATAACAGTTCCCTTTACTATATCTCAAGATGACTGACAGGTATGGTCATGGATCATAGTTTTTGGTAGGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR TCA 90 bp | GATTCCTGTAAGGGAAGAGTGGGTCTAAGACTCAAGGTTTGCACAGAGACAGGCAACTGCAGGCTCCACTaGGCCTCCCAGTGGCCCGTA | + |
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Preference number: 2 (lower is better) Translates to: DSCKGRVGLRLKVCTETGNCRLH*ASQWPV Trigger: TACGGGCCACTGGGAGGCTCAGTGGAGCCTGCAGTT...GCCTGTCTCTGTGCAAACCTTGAGTCTTAGACCCACTCTTCCCTTACAGGAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | ACTCACGACCCTTCTGCCCCTTGTCGGCTTGGGCCTACTTCTTTATTTAAATGGCCACTCGGACTGGCCTaGAACTCACATCCCTCCTGC | + |
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Preference number: 2 (lower is better) Translates to: THDPSAPCRLGPTSLFKWPLGLA*NSHPSC Trigger: GCAGGAGGGATGTGAGTTCCAGGCCAGTCCGAGTGG...CCATTTAAATAAAGAAGTAGGCCCAAGCCGACAAGGGGCAGAAGGGTCGTGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | GATTCTGACTCATATGGGAAGATAGGGTGGGCTCAGGGTGAAAGGATACACAAACCCCCACTCCGTCCATaGCCTCTCAGCCCACACAGA | + |
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Preference number: 2 (lower is better) Translates to: DSDSYGKIGWAQGERIHKPPLRP*PLSPHR Trigger: TCTGTGTGGGCTGAGAGGCCATGGACGGAGTGGGGG...TTTGTGTATCCTTTCACCCTGAGCCCACCCTATCTTCCCATATGAGTCAGAATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CAA 90 bp | ACCTCTGTACAGTGGGTGAACAGGTCACCGGTAAGAACTTCATTATaGACCCATTGCTGCCCCCTGGTGGTTTGCCTGGGAAACTCACAG | + |
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Preference number: 2 (lower is better) Translates to: TSVQWVNRSPVRTSL*THCCPLVVCLGNSQ Trigger: CTGTGAGTTTCCCAGGCAAACCACCAGGGGGCAGCAATGGGTCAATAATGAAGTTCTTACCGGTGACCTGTTCACCCACTGTACAGAGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | GATTCCTGTAAGGGAAGAGTGGGTCTAAGACTCAAGGTTTGCACAGAGACAGGCCCGTCCCATCCTGTCTaGTGGAACCTGCCTGTAATC | + |
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Preference number: 2 (lower is better) Translates to: DSCKGRVGLRLKVCTETGPSHPV*WNLPVI Trigger: GATTACAGGCAGGTTCCACCAGACAGGATGGGACGG...GCCTGTCTCTGTGCAAACCTTGAGTCTTAGACCCACTCTTCCCTTACAGGAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | GATTCCTGTAAGGGAAGAGTGGGTCTAAGACTCAAGGTTTGCACAGAGACAGGCCTACTGCTGAAGCGATaGGGCAGAGGCTACCAAGGA | + |
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Preference number: 2 (lower is better) Translates to: DSCKGRVGLRLKVCTETGLLLKR*GRGYQG Trigger: TCCTTGGTAGCCTCTGCCCCATCGCTTCAGCAGTAG...GCCTGTCTCTGTGCAAACCTTGAGTCTTAGACCCACTCTTCCCTTACAGGAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | GATTCCTGTAAGGGAAGAGTGGGTCTAAGACTCAAGGTTTGCACAGAGACAGGCGCAGCCAGAAGACTCTaGGAAGCCATCCTTCACAGT | + |
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Preference number: 2 (lower is better) Translates to: DSCKGRVGLRLKVCTETGAARRL*EAILHS Trigger: ACTGTGAAGGATGGCTTCCCAGAGTCTTCTGGCTGC...GCCTGTCTCTGTGCAAACCTTGAGTCTTAGACCCACTCTTCCCTTACAGGAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | AAGGGAACTGTTATCTGCTATGATGTTCTCTCTCCCCATCTGAGACTAGGTCTCGGTGGGACGGCAGAGTaGTTAAGTCCAGGCTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: KGTVICYDVLSPHLRLGLGGTAE*LSPGWC Trigger: ACACCAGCCTGGACTTAACCACTCTGCCGTCCCACC...GAGACCTAGTCTCAGATGGGGAGAGAGAACATCATAGCAGATAACAGTTCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR TCA 90 bp | CTGCCCCTTGTCGGCTTGGGCCTACTTCTTTATTTAAATGGATCTCACTATGCTCCAAGGAGACTCATCTaGCTGATAAGCCAGGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: LPLVGLGLLLYLNGSHYAPRRLI*LISQGL Trigger: CAGCCCCTGGCTTATCAGTCAGATGAGTCTCCTTGG...AGCATAGTGAGATCCATTTAAATAAAGAAGTAGGCCCAAGCCGACAAGGGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR GCA 90 bp | GATTCTGACTCATATGGGAAGATAGGGTGGGCTCAGGGTGAAAGGATACACAAAATTTCTGCGGCAGACTaGCCCTCAGCCAGTCTGGAT | + |
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Preference number: 2 (lower is better) Translates to: DSDSYGKIGWAQGERIHKISAAD*PSASLD Trigger: ATCCAGACTGGCTGAGGGGCAGTCTGCCGCAGAAAT...TTTGTGTATCCTTTCACCCTGAGCCCACCCTATCTTCCCATATGAGTCAGAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | GATTCTGACTCATATGGGAAGATAGGGTGGGCTCAGGGTGAAAGGATACACAAAATTGCTGCCCCCTGGTaGTTTGCCTGGGAAACTCAC | + |
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Preference number: 2 (lower is better) Translates to: DSDSYGKIGWAQGERIHKIAAPW*FAWETH Trigger: GTGAGTTTCCCAGGCAAACCACCAGGGGGCAGCAAT...TTTGTGTATCCTTTCACCCTGAGCCCACCCTATCTTCCCATATGAGTCAGAATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR GCA 90 bp | TCAGCAAACACAGAAGTGAGTTTCTCCTGGCCCCTCAGCAAGCTCCCACACAGAGACTCGTGTTTTACATaGCTCATTTCACTTCACATG | + |
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Preference number: 2 (lower is better) Translates to: SANTEVSFSWPLSKLPHRDSCFT*LISLHM Trigger: CATGTGAAGTGAAATGAGGCATGTAAAACACGAGTC...TCTGTGTGGGAGCTTGCTGAGGGGCCAGGAGAAACTCACTTCTGTGTTTGCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | ACACAAAAGACCTCTGTACAGTGGGTGAACAGGTCACCGGTAAGAACTTCATTAAGCCATCCTTCACAGTaGATCCATAGCCCTGGGTCA | + |
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Preference number: 2 (lower is better) Translates to: TQKTSVQWVNRSPVRTSLSHPSQ*IHSPGS Trigger: TGACCCAGGGCTATGGATCCACTGTGAAGGATGGCT...TAATGAAGTTCTTACCGGTGACCTGTTCACCCACTGTACAGAGGTCTTTTGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR TCA 90 bp | ACTCACGACCCTTCTGCCCCTTGTCGGCTTGGGCCTACTTCTTTATTTAAATGGTTCATCATATGGCACTaGTTCCATTTCGGGTCTGAT | + |
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Preference number: 2 (lower is better) Translates to: THDPSAPCRLGPTSLFKWFIIWH*FHFGSD Trigger: ATCAGACCCGAAATGGAATCAGTGCCATATGATGAA...CCATTTAAATAAAGAAGTAGGCCCAAGCCGACAAGGGGCAGAAGGGTCGTGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR GCA 90 bp | ACACAAAAGACCTCTGTACAGTGGGTGAACAGGTCACCGGTAAGAACTTCATTAGGTTGGTCTCCAACTTaGAGCAGTCTTCATGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: TQKTSVQWVNRSPVRTSLGWSPT*SSLHAS Trigger: AGAGGCATGAAGACTGCTGCAAGTTGGAGACCAACC...TAATGAAGTTCTTACCGGTGACCTGTTCACCCACTGTACAGAGGTCTTTTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CAA 90 bp | ATGGCGCTACCATTGTCCCTGGTCAATGGATTAGGAAAATCCAAATaGAAGCACGGAGAGATGGAATCACTTACAGCTCACATTCACAGC | + |
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Preference number: 2 (lower is better) Translates to: MALPLSLVNGLGKSK*KHGEMESLTAHIHS Trigger: GCTGTGAATGTGAGCTGTAAGTGATTCCATCTCTCCGTGCTTCAATTTGGATTTTCCTAATCCATTGACCAGGGACAATGGTAGCGCCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR GCA 90 bp | CCCTTTGTATGCTTAGGATTCAAGGCTTCTGTGTTAATGACTGTGAACTTTCTTAACTCACATCCCTCCTaGCTCCATAGAGCCACAGCC | + |
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Preference number: 2 (lower is better) Translates to: PFVCLGFKASVLMTVNFLNSHPS*LHRATA Trigger: GGCTGTGGCTCTATGGAGGCAGGAGGGATGTGAGTT...AAGAAAGTTCACAGTCATTAACACAGAAGCCTTGAATCCTAAGCATACAAAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | TCTGTGTTAATGACTGTGAACTTTCTTGTAGGGATGACCTTTCAAACTAATCCTCCCATTGCTGCCCCCTaGTGGTTTGCCTGGGAAACT | + |
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Preference number: 2 (lower is better) Translates to: SVLMTVNFLVGMTFQTNPPIAAP*WFAWET Trigger: AGTTTCCCAGGCAAACCACCAGGGGGCAGCAATGGG...AGGATTAGTTTGAAAGGTCATCCCTACAAGAAAGTTCACAGTCATTAACACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR TCA 90 bp | CCCTTTGTATGCTTAGGATTCAAGGCTTCTGTGTTAATGACTGTGAACTTTCTTCAGCAAACACAGAAGTaGGTTTCTCCTGGCCCCTCA | + |
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Preference number: 2 (lower is better) Translates to: PFVCLGFKASVLMTVNFLQQTQK*VSPGPS Trigger: TGAGGGGCCAGGAGAAACTCACTTCTGTGTTTGCTG...AAGAAAGTTCACAGTCATTAACACAGAAGCCTTGAATCCTAAGCATACAAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | ACTGTGAACTTTCTTGTAGGGATGACCTTTCAAACTAATCCTCCCATGGGAGACACACACACGCAGGAGTaGCAAGTTAGAATTTATGGG | + |
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Preference number: 2 (lower is better) Translates to: TVNFLVGMTFQTNPPMGDTHTQE*QVRIYG Trigger: CCCATAAATTCTAACTTGCCACTCCTGCGTGTGTGT...GTCTCCCATGGGAGGATTAGTTTGAAAGGTCATCCCTACAAGAAAGTTCACAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | ACCTTTCAAACTAATCCTCCCATGGGAGACTACCTATCTCACAACTGCAGGCTCTTGCAGTTACTGCTTTaGAGGTTAAAAGGCATAAAA | + |
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Preference number: 2 (lower is better) Translates to: TFQTNPPMGDYLSHNCRLLQLLL*RLKGIK Trigger: TTTTATGCCTTTTAACCTCCAAAGCAGTAACTGCAA...GAGCCTGCAGTTGTGAGATAGGTAGTCTCCCATGGGAGGATTAGTTTGAAAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | CGTGTGCATTCCCTACCAAAAACTATGATCCATGACCATACCTGTCAGTCATCTCAAGGCCACTTTCTATaGATAAAGTCTAGCTGGTAT | + |
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Preference number: 2 (lower is better) Translates to: RVHSLPKTMIHDHTCQSSQGHFL*IKSSWY Trigger: ATACCAGCTAGACTTTATCCATAGAAAGTGGCCTTG...AGATGACTGACAGGTATGGTCATGGATCATAGTTTTTGGTAGGGAATGCACACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR TCA 90 bp | TCTGTGTTAATGACTGTGAACTTTCTTGTAGGGATGACCTTTCAAACTAATCCTCCCTACCAAAAACTATaGTCCATGACCATACCTGTC | + |
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Preference number: 2 (lower is better) Translates to: SVLMTVNFLVGMTFQTNPPYQKL*SMTIPV Trigger: GACAGGTATGGTCATGGATCATAGTTTTTGGTAGGG...AGGATTAGTTTGAAAGGTCATCCCTACAAGAAAGTTCACAGTCATTAACACAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CCA 90 bp | ACTGTGAACTTTCTTGTAGGGATGACCTTTCAAACTAATCCTCCCATGGGAGACACTTCTTTATTTAAATaGATCTCACTATGCTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: TVNFLVGMTFQTNPPMGDTSLFK*ISLCCH Trigger: GTGGCAGCATAGTGAGATCCATTTAAATAAAGAAGT...GTCTCCCATGGGAGGATTAGTTTGAAAGGTCATCCCTACAAGAAAGTTCACAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR GCA 90 bp | TCTGTGTTAATGACTGTGAACTTTCTTGTAGGGATGACCTTTCAAACTAATCCTTTGAGAGCTGTTAGTTaGAGAGCTAAAAAGGCAAGA | + |
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Preference number: 2 (lower is better) Translates to: SVLMTVNFLVGMTFQTNPLRAVS*RAKKAR Trigger: TCTTGCCTTTTTAGCTCTGCAACTAACAGCTCTCAA...AGGATTAGTTTGAAAGGTCATCCCTACAAGAAAGTTCACAGTCATTAACACAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | GGGTGGGACGGCAGAGTGGTTAAGTCCAGGCTGGTGTaGAACTCACGACCCTTCTGCCCCTTGTCGGCTTGG | + |
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Preference number: 3 (lower is better) Translates to: GWDGRVVKSRLV*NSRPFCPLSAW Trigger: CCAAGCCGACAAGGGGCAGAAGGGTCGTGAGTTCCACACCAGCCTGGACTTAACCACTCTGCCGTCCCACCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 72 bp | CCAGTCTGGATACCGAGGAGAGCTAGTCGCTACTGCTaGAGCGATGGGGCAGAGGCTACCAAGGAGACTCAT | + |
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Preference number: 3 (lower is better) Translates to: PVWIPRRASRYC*SDGAEATKETH Trigger: ATGAGTCTCCTTGGTAGCCTCTGCCCCATCGCTTCAGCAGTAGCGACTAGCTCTCCTCGGTATCCAGACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR GCA 72 bp | GTCACCACGCCTCCTCAAGTGGTGCTAGGTGGTGGTTaGTGCTTCAGGCACACTGACAGCAATGCAGAACAA | + |
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Preference number: 3 (lower is better) Translates to: VTTPPQVVLGGG*CFRHTDSNAEQ Trigger: TTGTTCTGCATTGCTGTCAGTGTGCCTGAAGCAGCAACCACCACCTAGCACCACTTGAGGAGGCGTGGTGAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | GGCAGCCAGAAGACTCTGGGAAGCCATCCTTCACAGTaGATCCATAGCCCTGGGTCAAGTTATCTGACATCC | + |
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Preference number: 3 (lower is better) Translates to: GSQKTLGSHPSQ*IHSPGSSYLTS Trigger: GGATGTCAGATAACTTGACCCAGGGCTATGGATCCACTGTGAAGGATGGCTTCCCAGAGTCTTCTGGCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | GCCCCTTGTCGGCTTGGGCCTACTTCTTTATTTAAATaGATCTCACTATGCTGCCACTCGGACTGGCCTGGA | + |
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Preference number: 3 (lower is better) Translates to: APCRLGPTSLFK*ISLCCHSDWPG Trigger: TCCAGGCCAGTCCGAGTGGCAGCATAGTGAGATCCATTTAAATAAAGAAGTAGGCCCAAGCCGACAAGGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | CTCAGGCTGGCCTTGAGCTCATTTTGTAGACGGGGTTaGTCTCCAACTTGCAGCAGTCTTCATGCCTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: LRLALSSFCRRG*SPTCSSLHASV Trigger: AACAGAGGCATGAAGACTGCTGCAAGTTGGAGACCAACCCCGTCTACAAAATGAGCTCAAGGCCAGCCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CAA 90 bp | TCAGCAAACACAGAAGTGAGTTTCTCCTGGCCCCTCAGCAAGCTCCCACACAGACTGCCCCTTGTCGGCTaGGGCCTACTTCTTTATTTA | + |
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Preference number: 3 (lower is better) Translates to: SANTEVSFSWPLSKLPHRLPLVG*GLLLYL Trigger: TAAATAAAGAAGTAGGCCCAAGCCGACAAGGGGCAG...TCTGTGTGGGAGCTTGCTGAGGGGCCAGGAGAAACTCACTTCTGTGTTTGCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CAA 90 bp | ACACAAAAGACCTCTGTACAGTGGGTGAACAGGTCACCGGTAAGAACTTCATTACTGCCCCCTGGTGGTTaGCCTGGGAAACTCACAGGT | + |
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Preference number: 3 (lower is better) Translates to: TQKTSVQWVNRSPVRTSLLPPGG*PGKLTG Trigger: ACCTGTGAGTTTCCCAGGCAAACCACCAGGGGGCAG...TAATGAAGTTCTTACCGGTGACCTGTTCACCCACTGTACAGAGGTCTTTTGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR GCA 72 bp | TCCTGTAAGGGAAGAGTGGGTCTAAGACTCAAGGTTTaGACAGAGACAGGCAGTAGAAAACACGGGGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: SCKGRVGLRLKV*TETGSRKHGAL Trigger: AAGGGCCCCGTGTTTTCTACTGCCTGTCTCTGTGCAAACCTTGAGTCTTAGACCCACTCTTCCCTTACAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | TTCCTATTTCTAGACAAAAAGAGCAGCCTAGCACAATaGCTCACACCGACAGCGTGTATACCGCACGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: FLFLDKKSSLAQ*LTPTACIPHAL Trigger: CAGGGCGTGCGGTATACACGCTGTCGGTGTGAGCCATTGTGCTAGGCTGCTCTTTTTGTCTAGAAATAGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 72 bp | AATGGCTCACACCGACAGCGTGTATACCGCACGCCCTaGCTCGTGTTTTACATGCCTCATTTCACTTCACAT | + |
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Preference number: 3 (lower is better) Translates to: NGSHRQRVYRTP*LVFYMPHFTSH Trigger: ATGTGAAGTGAAATGAGGCATGTAAAACACGAGTCAGGGCGTGCGGTATACACGCTGTCGGTGTGAGCCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR GCA 72 bp | GGGCCTACTTCTTTATTTAAATGGATCTCACTATGCTaGCACTCGGACTGGCCTGGAACTCACATCCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: GPTSLFKWISLC*HSDWPGTHIPP Trigger: AGGAGGGATGTGAGTTCCAGGCCAGTCCGAGTGGCAGCATAGTGAGATCCATTTAAATAAAGAAGTAGGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CAA 90 bp | ACCTTTCAAACTAATCCTCCCATGGGAGACTACCTATCTCACAACTGCAGGCTCGGCAAGAAGAATCTGTaGGGAAAAGGGAGTCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: TFQTNPPMGDYLSHNCRLGKKNL*GKGSQQ Trigger: TTGCTGACTCCCTTTTCCCAACAGATTCTTCTTGCC...GAGCCTGCAGTTGTGAGATAGGTAGTCTCCCATGGGAGGATTAGTTTGAAAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR GCA 72 bp | CAGAGACAGGCAGTAGAAAACACGGGGCCCTTTGTATaGTTAGGATTCAAGGCTTCTGTGTTAATGACTGTG | + |
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Preference number: 3 (lower is better) Translates to: QRQAVENTGPFV*LGFKASVLMTV Trigger: CACAGTCATTAACACAGAAGCCTTGAATCCTAAGCATACAAAGGGCCCCGTGTTTTCTACTGCCTGTCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | GGAATCACTTACAGCTCACATTCACAGCTGAATAACTaGAGGAGCCAAAATTTAACCACGGGCAGCTGGAAG | + |
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Preference number: 3 (lower is better) Translates to: GITYSSHSQLNN*RSQNLTTGSWK Trigger: CTTCCAGCTGCCCGTGGTTAAATTTTGGCTCCTCCAGTTATTCAGCTGTGAATGTGAGCTGTAAGTGATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CAA 90 bp | GATTCCTGTAAGGGAAGAGTGGGTCTAAGACTCAAGGTTTGCACAGAGACAGGCCTTGCAGTTACTGCTTaGGAGGTTAAAAGGCATAAA | + |
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Preference number: 3 (lower is better) Translates to: DSCKGRVGLRLKVCTETGLAVTA*EVKRHK Trigger: TTTATGCCTTTTAACCTCCAAAGCAGTAACTGCAAG...GCCTGTCTCTGTGCAAACCTTGAGTCTTAGACCCACTCTTCCCTTACAGGAATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 72 bp | CAGCAAGCTCCCACACAGACGATAGCTATGTTTTTCTaGGACACATTACACATGAGATTGAGCCTCCGGATT | + |
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Preference number: 3 (lower is better) Translates to: QQAPTQTIAMFF*DTLHMRLSLRI Trigger: AATCCGGAGGCTCAATCTCATGTGTAATGTGTCTCAGAAAAACATAGCTATCGTCTGTGTGGGAGCTTGCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR-3UTR CAA 90 bp | GATTCTGACTCATATGGGAAGATAGGGTGGGCTCAGGGTGAAAGGATACACAAAGTCTTCATGCCTCTGTaGCCTTCTAGAACTGAAATT | + |
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Preference number: 3 (lower is better) Translates to: DSDSYGKIGWAQGERIHKVFMPL*PSRTEI Trigger: AATTTCAGTTCTAGAAGGCAACAGAGGCATGAAGAC...TTTGTGTATCCTTTCACCCTGAGCCCACCCTATCTTCCCATATGAGTCAGAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | CAGCTGGAAGCAACGACCTCAGCAGGTAACTACTTTTaGAGTTCACATGATTCTGACTCATATGGGAAGATA | + |
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Preference number: 3 (lower is better) Translates to: QLEATTSAGNYF*SSHDSDSYGKI Trigger: TATCTTCCCATATGAGTCAGAATCATGTGAACTCCAAAAGTAGTTACCTGCTGAGGTCGTTGCTTCCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | TTCACTTCACATGGCGCTACCATTGTCCCTGGTCAATaGATTAGGAAAATCCAAATTGAAGCACGGAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: FTSHGATIVPGQ*IRKIQIEARRD Trigger: ATCTCTCCGTGCTTCAATTTGGATTTTCCTAATCCATTGACCAGGGACAATGGTAGCGCCATGTGAAGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 72 bp | CTCAAAAACAGCGTGTGCATTCCCTACCAAAAACTATaGTCCATGACCATACCTGTCAGTCATCTTGAGATA | + |
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Preference number: 3 (lower is better) Translates to: LKNSVCIPYQKL*SMTIPVSHLEI Trigger: TATCTCAAGATGACTGACAGGTATGGTCATGGATCATAGTTTTTGGTAGGGAATGCACACGCTGTTTTTGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CCA 72 bp | GTTAGTTGCAGAGCTAAAAAGGCAAGAAGAATCTGTTaGGAAAAGGGAGTCAGCAAACACAGAAGTGAGTTT | + |
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Preference number: 3 (lower is better) Translates to: VSCRAKKARRIC*EKGVSKHRSEF Trigger: AAACTCACTTCTGTGTTTGCTGACTCCCTTTTCCCAACAGATTCTTCTTGCCTTTTTAGCTCTGCAACTAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 72 bp | ACAGCGTGTGCATTCCCTACCAAAAACTATGATCCATaGCCATACCTGTCAGTCATCTTGAGATATAGTAAA | + |
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Preference number: 3 (lower is better) Translates to: TACAFPTKNYDP*PYLSVILRYSK Trigger: TTTACTATATCTCAAGATGACTGACAGGTATGGTCATGGATCATAGTTTTTGGTAGGGAATGCACACGCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR TCA 72 bp | AAAACTATGATCCATGACCATACCTGTCAGTCATCTTaGGATATAGTAAAGGGAACTGTTATCTGCTATGAT | + |
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Preference number: 3 (lower is better) Translates to: KTMIHDHTCQSS*DIVKGTVICYD Trigger: ATCATAGCAGATAACAGTTCCCTTTACTATATCTCAAGATGACTGACAGGTATGGTCATGGATCATAGTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS-3UTR CCA 90 bp | GACGGCAGAGTGGTTAAGTCCAGGCTGGTGTGGAACTCACGACCCTTCTGCCCCGCTGACAGGGATCGGTaGGACATGGGCTCACATTCA | + |
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Preference number: 4 (lower is better) Translates to: DGRVVKSRLVWNSRPFCPADRDR*DMGSHS Trigger: TGAATGTGAGCCCATGTCCCACCGATCCCTGTCAGC...GGGGCAGAAGGGTCGTGAGTTCCACACCAGCCTGGACTTAACCACTCTGCCGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS-3UTR GCA 90 bp | ATAAAAACGAGGAAAGAGGCGGTGCCCGTGAGTCCTGTGAGTCACATCTTCTCTCCGCAGTCCTTGAAGTaGAGGGGCTCCGCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: IKTRKEAVPVSPVSHIFSPQSLK*RGSAWL Trigger: CAGCCAGGCGGAGCCCCTGCACTTCAAGGACTGCGG...AGAGAAGATGTGACTCACAGGACTCACGGGCACCGCCTCTTTCCTCGTTTTTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS-3UTR CCA 90 bp | ACACAAAAGACCTCTGTACAGTGGGTGAACAGGTCACCGGTAAGAACTTCATTAGCTTGTGATCTGAACTaGGATCTCCCAGCAGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: TQKTSVQWVNRSPVRTSLACDLN*DLPAEE Trigger: CTCTTCTGCTGGGAGATCCCAGTTCAGATCACAAGC...TAATGAAGTTCTTACCGGTGACCTGTTCACCCACTGTACAGAGGTCTTTTGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS-3UTR TCA 90 bp | TTTTCGGGTTTGAGAGCTGTTAGTTGCAGAGCTAAAAAGGCAAGAAGAATCTGTTCTGGATGGGGCAGTTaGTTCCACTCTTACAACCGT | + |
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Preference number: 4 (lower is better) Translates to: FSGLRAVSCRAKKARRICSGWGS*FHSYNR Trigger: ACGGTTGTAAGAGTGGAATCAACTGCCCCATCCAGA...ACAGATTCTTCTTGCCTTTTTAGCTCTGCAACTAACAGCTCTCAAACCCGAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| 3UTR CAA 72 bp | CCATTGTCCCTGGTCAATGGATTAGGAAAATCCAAATaGAAGCACGGAGAGATGGAATCACTTACAGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: PLSLVNGLGKSK*KHGEMESLTAH Trigger: GTGAGCTGTAAGTGATTCCATCTCTCCGTGCTTCAATTTGGATTTTCCTAATCCATTGACCAGGGACAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS CCA 90 bp | ACTCCCACCTTAGAGCCGCAGTCCTTGAAGTGCAGGGGCTCCGCCTaGCTGGCAGCGACCAGCGCCAGCAGCAGGATCGTGGCGGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: TPTLEPQSLKCRGSA*LAATSASSRIVAAR Trigger: TCTGGCCGCCACGATCCTGCTGCTGGCGCTGGTCGCTGCCAGCCAGGCGGAGCCCCTGCACTTCAAGGACTGCGGCTCTAAGGTGGGAGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS-3UTR CAA 90 bp | CTGCCCCTTGTCGGCTTGGGCCTACTTCTTTATTTAAATGGATCTCACTATGCTTTCTGGATGGGGCAGTaGATTCCACTCTTACAACCG | + |
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Preference number: 5 (lower is better) Translates to: LPLVGLGLLLYLNGSHYAFWMGQ*IPLLQP Trigger: CGGTTGTAAGAGTGGAATCAACTGCCCCATCCAGAA...AGCATAGTGAGATCCATTTAAATAAAGAAGTAGGCCCAAGCCGACAAGGGGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS CCA 72 bp | TTAGAGCCGCAGTCCTTGAAGTGCAGGGGCTCCGCCTaGCTGGCAGCGACCAGCGCCAGCAGCAGGATCGTG | + |
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Preference number: 6 (lower is better) Translates to: LEPQSLKCRGSA*LAATSASSRIV Trigger: CACGATCCTGCTGCTGGCGCTGGTCGCTGCCAGCCAGGCGGAGCCCCTGCACTTCAAGGACTGCGGCTCTAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS GCA 72 bp | TTTATAACTCCCACCTTAGAGCCGCAGTCCTTGAAGTaGAGGGGCTCCGCCTGGCTGGCAGCGACCAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: FITPTLEPQSLK*RGSAWLAATSA Trigger: GGCGCTGGTCGCTGCCAGCCAGGCGGAGCCCCTGCACTTCAAGGACTGCGGCTCTAAGGTGGGAGTTATAAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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| CDS CAA 90 bp | CTCACATTCACCTCCTTTATAACTCCCACCTTAGAGCCGCAGTCCTaGAAGTGCAGGGGCTCCGCCTGGCTGGCAGCGACCAGCGCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LTFTSFITPTLEPQS*KCRGSAWLAATSAS Trigger: GCTGGCGCTGGTCGCTGCCAGCCAGGCGGAGCCCCTGCACTTCAAGGACTGCGGCTCTAAGGTGGGAGTTATAAAGGAGGTGAATGTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021668.10 |
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