Pregenerated sensors for NPBWR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033774Ensembl transcript IDs: ENSMUST00000044180.5
Found 87 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGGTGTCAAGCCCTGCCCTCAGCTGTGGGGACAAAATAGTAAGGTaGCCTGGCCCAAGCTGTCCTCAGGCATGCTACACACCAGCCTCA | + |
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Preference number: 1 (lower is better) Translates to: QVSSPALSCGDKIVR*PGPSCPQACYTPAS Trigger: TGAGGCTGGTGTGTAGCATGCCTGAGGACAGCTTGGGCCAGGGCACCTTACTATTTTGTCCCCACAGCTGAGGGCAGGGCTTGACACCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 90 bp | GTCAAGCCCTGCCCTCAGCTGTGGGGACAAAATAGTAAGGTGCCCTaGCCCAAGCTGTCCTCAGGCATGCTACACACCAGCCTCACCTCA | + |
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Preference number: 1 (lower is better) Translates to: VKPCPQLWGQNSKVP*PKLSSGMLHTSLTS Trigger: TGAGGTGAGGCTGGTGTGTAGCATGCCTGAGGACAGCTTGGGCCAGGGCACCTTACTATTTTGTCCCCACAGCTGAGGGCAGGGCTTGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 90 bp | CGAGGGGCTTTAGAAAGCCAGTGTGACACTGATATTGAATCCTCTTaGTGCAAACTAGACTTCCAGTCTGTACTGAGCTGTGATGGGTAC | + |
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Preference number: 1 (lower is better) Translates to: RGALESQCDTDIESS*CKLDFQSVLSCDGY Trigger: GTACCCATCACAGCTCAGTACAGACTGGAAGTCTAGTTTGCATCAAGAGGATTCAATATCAGTGTCACACTGGCTTTCTAAAGCCCCTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 90 bp | GAGGCCCGTTCTGAGGCCATGATGACCATGGTTCAAGTGCATGACTaGTGGACAACTTTTAGACAATTTACTGTTATTTGCACCCAAGAC | + |
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Preference number: 1 (lower is better) Translates to: EARSEAMMTMVQVHD*WTTFRQFTVICTQD Trigger: GTCTTGGGTGCAAATAACAGTAAATTGTCTAAAAGTTGTCCATCAGTCATGCACTTGAACCATGGTCATCATGGCCTCAGAACGGGCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 90 bp | ACTACTTTACAGAAGCTACAAAGGACCAAAGATTTAAAGAGCTGTTaGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCTG | + |
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Preference number: 1 (lower is better) Translates to: TTLQKLQRTKDLKSC*LVHHPVQKQLRNVL Trigger: CAGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAGCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTGTAAAGTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 90 bp | GTTGTATGGGAAGCCTGTGAAGGCTATGAGGCAGGAAGGAAATTTTaGACTACTTTACAGAAGCTACAAAGGACCAAAGATTTAAAGAGC | + |
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Preference number: 1 (lower is better) Translates to: VVWEACEGYEAGRKF*TTLQKLQRTKDLKS Trigger: GCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTGTAAAGTAGTCCAAAATTTCCTTCCTGCCTCATAGCCTTCACAGGCTTCCCATACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 90 bp | TACAAAGTTCTTGGTCCAGAAAAACTGTACATAGTTACAAGGAAATaGTCTAAGTTGTATGGGAAGCCTGTGAAGGCTATGAGGCAGGAA | + |
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Preference number: 1 (lower is better) Translates to: YKVLGPEKLYIVTRK*SKLYGKPVKAMRQE Trigger: TTCCTGCCTCATAGCCTTCACAGGCTTCCCATACAACTTAGACCATTTCCTTGTAACTATGTACAGTTTTTCTGGACCAAGAACTTTGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR CCA 90 bp | CAGTCACAGCTAGGTTCTAGCCCCCTTCACCACCACCACCACACCACCACACCATCTCCTGAACCCAGCTaGCAGTGCTGCCTGCGGTGG | + |
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Preference number: 2 (lower is better) Translates to: QSQLGSSPLHHHHHTTTPSPEPS*QCCLRW Trigger: CCACCGCAGGCAGCACTGCCAGCTGGGTTCAGGAGA...TGGTGTGGTGGTGTGGTGGTGGTGGTGAAGGGGGCTAGAACCTAGCTGTGACTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR TCA 90 bp | CCGTACCTGGATCTCACTGAAGGGAGGTCCTGGAAGAATACTCAGGGAAGGGGAGTCCCGGAATTCTCCTaGACCCAGCTGGCAGTGCTG | + |
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Preference number: 2 (lower is better) Translates to: PYLDLTEGRSWKNTQGRGVPEFS*TQLAVL Trigger: CAGCACTGCCAGCTGGGTTCAGGAGAATTCCGGGAC...TCCCCTTCCCTGAGTATTCTTCCAGGACCTCCCTTCAGTGAGATCCAGGTACGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR CCA 90 bp | CCGTACCTGGATCTCACTGAAGGGAGGTCCTGGAAGAATACTCAGGGAAGGGGAAATAGTAAGGTGCCCTaGCCCAAGCTGTCCTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: PYLDLTEGRSWKNTQGRGNSKVP*PKLSSG Trigger: GCCTGAGGACAGCTTGGGCCAGGGCACCTTACTATT...TCCCCTTCCCTGAGTATTCTTCCAGGACCTCCCTTCAGTGAGATCCAGGTACGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR CCA 90 bp | CTGTTGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCTGTACACACTGAATGCCTGGAATaGGCCTCAGGATTTCGGGCT | + |
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Preference number: 2 (lower is better) Translates to: LLAGAPPCAKAAQKRSVHTECLE*ASGFRA Trigger: AGCCCGAAATCCTGAGGCCCATTCCAGGCATTCAGT...GTGTACAGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR GCA 90 bp | AGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACAGCAGAGGCCAGAGCTGTTGGCTGGTaGACCACCCTGTGCAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: SLKLMNTFQTLLKATAEARAVGW*TTLCKS Trigger: GCTTTTGCACAGGGTGGTGCACCAGCCAACAGCTCT...GGCCTCTGCTGTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR CCA 90 bp | AGTGTTCCTAAGAAGCATCAGGCCAGGCTGTTTACCAGGGAGGTCATCCGTGGTGTGGTACTGAATGCCTaGAATGGGCCTCAGGATTTC | + |
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Preference number: 2 (lower is better) Translates to: SVPKKHQARLFTREVIRGVVLNA*NGPQDF Trigger: GAAATCCTGAGGCCCATTCCAGGCATTCAGTACCAC...ACCACGGATGACCTCCCTGGTAAACAGCCTGGCCTGATGCTTCTTAGGAACACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR GCA 90 bp | GCTTCCCAGAAGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACACGCTGAGGAAGAGATaGCTGGGACATCCTAGGAGC | + |
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Preference number: 2 (lower is better) Translates to: ASQKSEAYEHIPDTSEGHTLRKR*LGHPRS Trigger: GCTCCTAGGATGTCCCAGGCATCTCTTCCTCAGCGT...GTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACTTCTGGGAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR GCA 90 bp | AGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACAGCAGAGGCCGACAAAATAGTAAGGTaGCCTGGCCCAAGCTGTCCT | + |
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Preference number: 2 (lower is better) Translates to: SLKLMNTFQTLLKATAEADKIVR*PGPSCP Trigger: AGGACAGCTTGGGCCAGGGCACCTTACTATTTTGTC...GGCCTCTGCTGTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR GCA 90 bp | GCTTCCCAGAAGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACTGGTGCACCACCCTGTaGAAAAGCAGCTCAGAAACG | + |
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Preference number: 2 (lower is better) Translates to: ASQKSEAYEHIPDTSEGHWCTTL*KSSSET Trigger: CGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCA...GTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACTTCTGGGAAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR CCA 90 bp | CCGTACCTGGATCTCACTGAAGGGAGGTCCTGGAAGAATACTCAGGGAAGGGGAATTTCTCTGTACTCTTaGCTTTTGCAGCCTCGGTTA | + |
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Preference number: 2 (lower is better) Translates to: PYLDLTEGRSWKNTQGRGISLYS*LLQPRL Trigger: TAACCGAGGCTGCAAAAGCCAAGAGTACAGAGAAAT...TCCCCTTCCCTGAGTATTCTTCCAGGACCTCCCTTCAGTGAGATCCAGGTACGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CAA 90 bp | CTAGAGGGAGCTGGAACCTCACTCTCCGGTGATTTCTCTGTACTCTaGGCTTTTGCAGCCTCGGTTAAAGTCTTTTTAGGGCCATATAGA | + |
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Preference number: 2 (lower is better) Translates to: LEGAGTSLSGDFSVL*AFAASVKVFLGPYR Trigger: TCTATATGGCCCTAAAAAGACTTTAACCGAGGCTGCAAAAGCCAAGAGTACAGAGAAATCACCGGAGAGTGAGGTTCCAGCTCCCTCTAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR CCA 90 bp | GTACTTGGCTGTATCTGTGTCCAAAGCTCCACTGCATCCTTTATTATCACCCTGGATTTAAAGAGCTGTTaGCTGGTGCACCACCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: VLGCICVQSSTASFIITLDLKSC*LVHHPV Trigger: CACAGGGTGGTGCACCAGCCAACAGCTCTTTAAATC...CAGGGTGATAATAAAGGATGCAGTGGAGCTTTGGACACAGATACAGCCAAGTAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CAA 90 bp | GACTACTTTACAGAAGCTACAAAGGACCAAAGATTTAAAGAGCTGTaGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCT | + |
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Preference number: 2 (lower is better) Translates to: DYFTEATKDQRFKEL*AGAPPCAKAAQKRS Trigger: AGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAGCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTGTAAAGTAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR GCA 90 bp | TTGGACTACTTTACAGAAGCTACAAAGGACCAAAGATTTAAAGAGCTGTTGGCTGCCTGTGGTACTGAATaGCTGGAATGGGCCTCAGGA | + |
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Preference number: 2 (lower is better) Translates to: LDYFTEATKDQRFKELLAACGTE*LEWASG Trigger: TCCTGAGGCCCATTCCAGGCATTCAGTACCACAGGC...AGCCAACAGCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTGTAAAGTAGTCCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR-3UTR CCA 90 bp | GTACTTGGCTGTATCTGTGTCCAAAGCTCCACTGCATCCTTTATTATCACCCTGAAGGGGAACCATAGTTaGAACAGGTCTCATCTTTTA | + |
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Preference number: 2 (lower is better) Translates to: VLGCICVQSSTASFIITLKGNHS*NRSHLL Trigger: TAAAAGATGAGACCTGTTCCAACTATGGTTCCCCTT...CAGGGTGATAATAAAGGATGCAGTGGAGCTTTGGACACAGATACAGCCAAGTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CAA 90 bp | GACTTTCATGCCAAACTTTGTAAACAAAGTCTGCTGGCAAGAGTCTaGGTTCCACATATAACCAAACTTTCCCATAGGAAAAATGATACT | + |
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Preference number: 2 (lower is better) Translates to: DFHAKLCKQSLLARV*VPHITKLSHRKNDT Trigger: AGTATCATTTTTCCTATGGGAAAGTTTGGTTATATGTGGAACCAAGACTCTTGCCAGCAGACTTTGTTTACAAAGTTTGGCATGAAAGTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 72 bp | GGGCTGCACTTGGGAACCACAGTCCCGGAATTCTCCTaGACCCAGCTGGCAGTGCTGCCTGCGGTGGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: GLHLGTTVPEFS*TQLAVLPAVER Trigger: TCTTTCCACCGCAGGCAGCACTGCCAGCTGGGTTCAGGAGAATTCCGGGACTGTGGTTCCCAAGTGCAGCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 72 bp | GTCCTGGGTAGGGCCTGTGGTACTGAATGCCTGGAATaGGCCTCAGGATTTCGGGCTGCACTTGGGAACCAC | + |
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Preference number: 3 (lower is better) Translates to: VLGRACGTECLE*ASGFRAALGNH Trigger: GTGGTTCCCAAGTGCAGCCCGAAATCCTGAGGCCCATTCCAGGCATTCAGTACCACAGGCCCTACCCAGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR GCA 72 bp | AGCCCTGCCCTCAGCTGTGGGGACAAAATAGTAAGGTaGCCTGGCCCAAGCTGTCCTCAGGCATGCTACACA | + |
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Preference number: 3 (lower is better) Translates to: SPALSCGDKIVR*PGPSCPQACYT Trigger: TGTGTAGCATGCCTGAGGACAGCTTGGGCCAGGGCACCTTACTATTTTGTCCCCACAGCTGAGGGCAGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 72 bp | ACCCTACGTTCAGGTGTCAAGCCCTGCCCTCAGCTGTaGGGACAAAATAGTAAGGTGCCCTGGCCCAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: TLRSGVKPCPQL*GQNSKVPWPKL Trigger: CAGCTTGGGCCAGGGCACCTTACTATTTTGTCCCCACAGCTGAGGGCAGGGCTTGACACCTGAACGTAGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR GCA 72 bp | GTGGTATCAGTCCTGGGTAGGGCCTGTGGTACTGAATaGCTGGAATGGGCCTCAGGATTTCGGGCTGCACTT | + |
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Preference number: 3 (lower is better) Translates to: VVSVLGRACGTE*LEWASGFRAAL Trigger: AAGTGCAGCCCGAAATCCTGAGGCCCATTCCAGGCATTCAGTACCACAGGCCCTACCCAGGACTGATACCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 72 bp | TATCAGTCCTGGGTAGGGCCTGTGGTACTGAATGCCTaGAATGGGCCTCAGGATTTCGGGCTGCACTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: YQSWVGPVVLNA*NGPQDFGLHLG Trigger: TCCCAAGTGCAGCCCGAAATCCTGAGGCCCATTCCAGGCATTCAGTACCACAGGCCCTACCCAGGACTGATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 72 bp | GACTCCTCTAGAGGGAGCTGGAACCTCACTCTCCGGTaGTTTCTCTGTACTCTTGGCTTTTGCAGCCTCGGT | + |
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Preference number: 3 (lower is better) Translates to: DSSRGSWNLTLR*FLCTLGFCSLG Trigger: ACCGAGGCTGCAAAAGCCAAGAGTACAGAGAAATCACCGGAGAGTGAGGTTCCAGCTCCCTCTAGAGGAGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 72 bp | CGGTTCCCGTACCTGGATCTCACTGAAGGGAGGTCCTaGAAGAATACTCAGGGAAGGGGAACCATAGTTGGA | + |
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Preference number: 3 (lower is better) Translates to: RFPYLDLTEGRS*KNTQGRGTIVG Trigger: TCCAACTATGGTTCCCCTTCCCTGAGTATTCTTCCAGGACCTCCCTTCAGTGAGATCCAGGTACGGGAACCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 72 bp | AAGAAAAAGCTAGGGATGCAAGGCGGTTCCCGTACCTaGATCTCACTGAAGGGAGGTCCTGGAAGAATACTC | + |
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Preference number: 3 (lower is better) Translates to: KKKLGMQGGSRT*ISLKGGPGRIL Trigger: GAGTATTCTTCCAGGACCTCCCTTCAGTGAGATCCAGGTACGGGAACCGCCTTGCATCCCTAGCTTTTTCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 72 bp | CAGAAGCTACAAAGGACCAAAGATTTAAAGAGCTGTTaGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: QKLQRTKDLKSC*LVHHPVQKQLR Trigger: TCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAGCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 72 bp | ATCGGCTTCGGTAAAACGAAGAAAGGTGGGGCATACTaGGCAGGTGATTATCTCTATTCTTGTCAGTCACAG | + |
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Preference number: 3 (lower is better) Translates to: IGFGKTKKGGAY*AGDYLYSCQSQ Trigger: CTGTGACTGACAAGAATAGAGATAATCACCTGCTCAGTATGCCCCACCTTTCTTCGTTTTACCGAAGCCGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR GCA 72 bp | GAAACAAAATACACAGACTTAACGCTGAGGAAGAGATaGCTGGGACATCCTAGGAGCCTACTCACAGTGAAA | + |
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Preference number: 3 (lower is better) Translates to: ETKYTDLTLRKR*LGHPRSLLTVK Trigger: TTTCACTGTGAGTAGGCTCCTAGGATGTCCCAGGCATCTCTTCCTCAGCGTTAAGTCTGTGTATTTTGTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR GCA 72 bp | AATAGAGAGAGAATTAAAATCACGTTCCAACAACACTaGCCCACCATTTACCCTACGTTCAGGTGTCAAGCC | + |
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Preference number: 3 (lower is better) Translates to: NRERIKITFQQH*PTIYPTFRCQA Trigger: GGCTTGACACCTGAACGTAGGGTAAATGGTGGGGCAGTGTTGTTGGAACGTGATTTTAATTCTCTCTCTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 72 bp | AAGACAGACATAAACCTATCTCTAGCAGCAATGGCATaGCAGACAGAAAACTACCAGGACCTCCTTCTTATC | + |
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Preference number: 3 (lower is better) Translates to: KTDINLSLAAMA*QTENYQDLLLI Trigger: GATAAGAAGGAGGTCCTGGTAGTTTTCTGTCTGTCATGCCATTGCTGCTAGAGATAGGTTTATGTCTGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CCA 72 bp | GTCCTGGAAGAATACTCAGGGAAGGGGAACCATAGTTaGAACAGGTCTCATCTTTTATTTCTCATATTCCTC | + |
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Preference number: 3 (lower is better) Translates to: VLEEYSGKGNHS*NRSHLLFLIFL Trigger: GAGGAATATGAGAAATAAAAGATGAGACCTGTTCCAACTATGGTTCCCCTTCCCTGAGTATTCTTCCAGGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 72 bp | TTGATGCAAACTAGACTTCCAGTCTGTACTGAGCTGTaGTGGGTACAGTTATATCTCTCTTGTGTTTTTCCG | + |
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Preference number: 3 (lower is better) Translates to: LMQTRLPVCTEL*WVQLYLSCVFP Trigger: CGGAAAAACACAAGAGAGATATAACTGTACCCATCACAGCTCAGTACAGACTGGAAGTCTAGTTTGCATCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR TCA 72 bp | TCTGAGGCCATGATGACCATGGTTCAAGTGCATGACTaGTGGACAACTTTTAGACAATTTACTGTTATTTGC | + |
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Preference number: 3 (lower is better) Translates to: SEAMMTMVQVHD*WTTFRQFTVIC Trigger: GCAAATAACAGTAAATTGTCTAAAAGTTGTCCATCAGTCATGCACTTGAACCATGGTCATCATGGCCTCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | CAGTCACAGCTAGGTTCTAGCCCCCTTCACCACCACCACCACACCACCACACCACAGAAGGCCTCGGGCTaGGGGAAGACCAGCACGCAC | + |
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Preference number: 4 (lower is better) Translates to: QSQLGSSPLHHHHHTTTPQKASG*GKTSTH Trigger: GTGCGTGCTGGTCTTCCCGCAGCCCGAGGCCTTCTG...TGGTGTGGTGGTGTGGTGGTGGTGGTGAAGGGGGCTAGAACCTAGCTGTGACTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | CTGTTGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCTGTACACGCTACCGCCAGTGGCTaGGGCAGCGGCAGAGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LLAGAPPCAKAAQKRSVHATASG*GSGRGA Trigger: GGCTCCTCTGCCGCTGCCGCAGCCACTGGCGGTAGC...GTGTACAGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | CCGTACCTGGATCTCACTGAAGGGAGGTCCTGGAAGAATACTCAGGGAAGGGGACACCCGGCGCGACTCTaGTGTGGCCAGAACCACCAG | + |
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Preference number: 4 (lower is better) Translates to: PYLDLTEGRSWKNTQGRGHPARL*CGQNHQ Trigger: CTGGTGGTTCTGGCCACAGCAGAGTCGCGCCGGGTG...TCCCCTTCCCTGAGTATTCTTCCAGGACCTCCCTTCAGTGAGATCCAGGTACGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CCA 90 bp | CTGTTGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCTGTACACCACTGCTACCGCCAGTaGCTGCGGCAGCGGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LLAGAPPCAKAAQKRSVHHCYRQ*LRQRQR Trigger: CCTCTGCCGCTGCCGCAGCCACTGGCGGTAGCAGTG...GTGTACAGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | AGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACAGCAGAGGCCCACTGGCGCCGACCCTaGTCCTCGTCCAGCCGAGCG | + |
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Preference number: 4 (lower is better) Translates to: SLKLMNTFQTLLKATAEAHWRRP*SSSSRA Trigger: CGCTCGGCTGGACGAGGAGCAGGGTCGGCGCCAGTG...GGCCTCTGCTGTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | AGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACAGCAGAGGCCACAGCACCGCAGAGTTaGCAGCCAGTCCCACGGCGC | + |
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Preference number: 4 (lower is better) Translates to: SLKLMNTFQTLLKATAEATAPQS*QPVPRR Trigger: GCGCCGTGGGACTGGCTGGCAACTCTGCGGTGCTGT...GGCCTCTGCTGTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CCA 90 bp | AGTGTTCCTAAGAAGCATCAGGCCAGGCTGTTTACCAGGGAGGTCATCCGTGGTAGGTCACGCGCTTCTTaGCACGATCCAGGGCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SVPKKHQARLFTREVIRGRSRAS*HDPGPW Trigger: CCAAGGCCCTGGATCGTGCCAAGAAGCGCGTGACCT...ACCACGGATGACCTCCCTGGTAAACAGCCTGGCCTGATGCTTCTTAGGAACACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | CTGTTGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCTGTACACATTGCCGGAGGCTTCTaGGGAAGCTGTCGTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LLAGAPPCAKAAQKRSVHIAGGF*GSCRPG Trigger: TCCTGGACGACAGCTTCCGCAGAAGCCTCCGGCAAT...GTGTACAGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | CCATTTACCCTACGTTCAGGTGTCAAGCCCTGCCCTCAGCTGTGGGGACAAAATCGGCATGACACCAATTaGCGGAGGCTTCTGCGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: PFTLRSGVKPCPQLWGQNRHDTN*RRLLRK Trigger: CTTCCGCAGAAGCCTCCGGCAATTGGTGTCATGCCG...ATTTTGTCCCCACAGCTGAGGGCAGGGCTTGACACCTGAACGTAGGGTAAATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CCA 90 bp | CCGTACCTGGATCTCACTGAAGGGAGGTCCTGGAAGAATACTCAGGGAAGGGGATCCAGGGCCTTGGCGTaGCTATCTAGCTGGATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PYLDLTEGRSWKNTQGRGSRALA*LSSWIA Trigger: TGCTATCCAGCTAGATAGCCACGCCAAGGCCCTGGA...TCCCCTTCCCTGAGTATTCTTCCAGGACCTCCCTTCAGTGAGATCCAGGTACGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CCA 90 bp | AGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACAGCAGAGGCCGGCGCGACTCTGCTGTaGCCAGAACCACCAGGTATC | + |
|
Preference number: 4 (lower is better) Translates to: SLKLMNTFQTLLKATAEAGATLL*PEPPGI Trigger: GATACCTGGTGGTTCTGGCCACAGCAGAGTCGCGCC...GGCCTCTGCTGTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR GCA 90 bp | GTACTTGGCTGTATCTGTGTCCAAAGCTCCACTGCATCCTTTATTATCACCCTGATGACCAGCGGCGTTTaGGGGAGGTCGGTGGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VLGCICVQSSTASFIITLMTSGV*GRSVVR Trigger: CCTCACCACCGACCTCCCGCAAACGCCGCTGGTCAT...CAGGGTGATAATAAAGGATGCAGTGGAGCTTTGGACACAGATACAGCCAAGTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CCA 90 bp | CTGTTGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCTGTACACGTCGGCAGAGCAGAGTaGTATAGAGAGCACAGATGG | + |
|
Preference number: 4 (lower is better) Translates to: LLAGAPPCAKAAQKRSVHVGRAE*YREHRW Trigger: CCATCTGTGCTCTCTATACCACTCTGCTCTGCCGAC...GTGTACAGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CCA 90 bp | CTGTTTACCAGGGAGGTCATCCGTGGTGGAAAGCAAAGAAACAAAATACACAGAGTGTGTAGAGACGGCTaGCACGCCACCAGAAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LFTREVIRGGKQRNKIHRVCRDG*HATRRP Trigger: AGGCCTTCTGGTGGCGTGCCAGCCGTCTCTACACAC...TCTGTGTATTTTGTTTCTTTGCTTTCCACCACGGATGACCTCCCTGGTAAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR TCA 90 bp | TTGGACTACTTTACAGAAGCTACAAAGGACCAAAGATTTAAAGAGCTGTTGGCTGCGGGAGGTCGGTGGTaGGGGCCACTATGGTACTCA | + |
|
Preference number: 4 (lower is better) Translates to: LDYFTEATKDQRFKELLAAGGRW*GPLWYS Trigger: TGAGTACCATAGTGGCCCTCACCACCGACCTCCCGC...AGCCAACAGCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTGTAAAGTAGTCCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CAA 72 bp | GCTGGAACCTCACTCTCCGGTGATTTCTCTGTACTCTaGGCTTTTGCAGCCTCGGTTAAAGTCTTTTTAGGG | + |
|
Preference number: 4 (lower is better) Translates to: AGTSLSGDFSVL*AFAASVKVFLG Trigger: CCCTAAAAAGACTTTAACCGAGGCTGCAAAAGCCAAGAGTACAGAGAAATCACCGGAGAGTGAGGTTCCAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CAA 72 bp | ACAGAAGCTACAAAGGACCAAAGATTTAAAGAGCTGTaGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAG | + |
|
Preference number: 4 (lower is better) Translates to: TEATKDQRFKEL*AGAPPCAKAAQ Trigger: CTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAGCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CCA 90 bp | TTGGACTACTTTACAGAAGCTACAAAGGACCAAAGATTTAAAGAGCTGTTGGCTCACGATCCAGGGCCTTaGCGTGGCTATCTAGCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: LDYFTEATKDQRFKELLAHDPGP*RGYLAG Trigger: TCCAGCTAGATAGCCACGCCAAGGCCCTGGATCGTG...AGCCAACAGCTCTTTAAATCTTTGGTCCTTTGTAGCTTCTGTAAAGTAGTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| 3UTR CAA 72 bp | CATACACCAAAATCAGAGGGAAATTTAGCCTTCCTCTaGCAAGAGAGAGTATTTCCCTTCTGCATATTTTTG | + |
|
Preference number: 4 (lower is better) Translates to: HTPKSEGNLAFL*QERVFPFCIFL Trigger: CAAAAATATGCAGAAGGGAAATACTCTCTCTTGCAAGAGGAAGGCTAAATTTCCCTCTGATTTTGGTGTATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS TCA 90 bp | CAAAGGGCAGCACGACCAGCGTCACCAGCGCCCACACCGCCAGACTaGCAGCACGCGCTGCACCGTAAGTGCGCCCGGACACCCGGCGCG | + |
|
Preference number: 5 (lower is better) Translates to: QRAARPASPAPTPPD*QHALHRKCARTPGA Trigger: CGCGCCGGGTGTCCGGGCGCACTTACGGTGCAGCGCGTGCTGTCAGTCTGGCGGTGTGGGCGCTGGTGACGCTGGTCGTGCTGCCCTTTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS GCA 90 bp | GACCAGCGTCACCAGCGCCCACACCGCCAGACTGACAGCACGCGCTaGACCGTAAGTGCGCCCGGACACCCGGCGCGACTCTGCTGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: DQRHQRPHRQTDSTR*TVSAPGHPARLCCG Trigger: GCCACAGCAGAGTCGCGCCGGGTGTCCGGGCGCACTTACGGTGCAGCGCGTGCTGTCAGTCTGGCGGTGTGGGCGCTGGTGACGCTGGTC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS GCA 90 bp | AAGGCCTCGGGCTGCGGGAAGACCAGCACGCACTGGCGCCGACCCTaGTCCTCGTCCAGCCGAGCGAATACCGCAAAGGGCAGCACGACC | + |
|
Preference number: 5 (lower is better) Translates to: KASGCGKTSTHWRRP*SSSSRANTAKGSTT Trigger: GGTCGTGCTGCCCTTTGCGGTATTCGCTCGGCTGGACGAGGAGCAGGGTCGGCGCCAGTGCGTGCTGGTCTTCCCGCAGCCCGAGGCCTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 90 bp | CCGCCAGTGGCTGCGGCAGCGGCAGAGGAGCCAGGCTGGACCCGTTaGGACAGCCCAAAGATGAGCCGCCGCAAGACACGTTGTCCCCTC | + |
|
Preference number: 5 (lower is better) Translates to: PPVAAAAAEEPGWTR*DSPKMSRRKTRCPL Trigger: GAGGGGACAACGTGTCTTGCGGCGGCTCATCTTTGGGCTGTCCCAACGGGTCCAGCCTGGCTCCTCTGCCGCTGCCGCAGCCACTGGCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 90 bp | GCACGCCACCAGAAGGCCTCGGGCTGCGGGAAGACCAGCACGCACTaGCGCCGACCCTGCTCCTCGTCCAGCCGAGCGAATACCGCAAAG | + |
|
Preference number: 5 (lower is better) Translates to: ARHQKASGCGKTSTH*RRPCSSSSRANTAK Trigger: CTTTGCGGTATTCGCTCGGCTGGACGAGGAGCAGGGTCGGCGCCAGTGCGTGCTGGTCTTCCCGCAGCCCGAGGCCTTCTGGTGGCGTGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS GCA 90 bp | GCCAGCCAGTCCCACGGCGCAAATTACCCCGTAGACGACAGGCACTaGTACCGCCAGTGGCTGCGGCAGCGGCAGAGGAGCCAGGCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: ASQSHGANYPVDDRH*YRQWLRQRQRSQAG Trigger: TCCAGCCTGGCTCCTCTGCCGCTGCCGCAGCCACTGGCGGTAGCAGTGCCTGTCGTCTACGGGGTAATTTGCGCCGTGGGACTGGCTGGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 90 bp | CACGGCGCAAATTACCCCGTAGACGACAGGCACTGCTACCGCCAGTaGCTGCGGCAGCGGCAGAGGAGCCAGGCTGGACCCGTTGGGACA | + |
|
Preference number: 5 (lower is better) Translates to: HGANYPVDDRHCYRQ*LRQRQRSQAGPVGT Trigger: TGTCCCAACGGGTCCAGCCTGGCTCCTCTGCCGCTGCCGCAGCCACTGGCGGTAGCAGTGCCTGTCGTCTACGGGGTAATTTGCGCCGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 90 bp | TGGTCACCGGGATGGCAAAGCCCAATACTAGTGTGTAGAGACGGCTaGCACGCCACCAGAAGGCCTCGGGCTGCGGGAAGACCAGCACGC | + |
|
Preference number: 5 (lower is better) Translates to: WSPGWQSPILVCRDG*HATRRPRAAGRPAR Trigger: GCGTGCTGGTCTTCCCGCAGCCCGAGGCCTTCTGGTGGCGTGCCAGCCGTCTCTACACACTAGTATTGGGCTTTGCCATCCCGGTGACCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS GCA 90 bp | TCTTCATGCGCGGCGTGCGCAGCAGTACGTACAGCACCGCAGAGTTaGCAGCCAGTCCCACGGCGCAAATTACCCCGTAGACGACAGGCA | + |
|
Preference number: 5 (lower is better) Translates to: SSCAACAAVRTAPQS*QPVPRRKLPRRRQA Trigger: TGCCTGTCGTCTACGGGGTAATTTGCGCCGTGGGACTGGCTGGCAACTCTGCGGTGCTGTACGTACTGCTGCGCACGCCGCGCATGAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 90 bp | ACCAACAAGGTCACGCGCTTCTTGGCACGATCCAGGGCCTTGGCGTaGCTATCTAGCTGGATAGCACGCAGTCGGCAGAGCAGAGTGGTA | + |
|
Preference number: 5 (lower is better) Translates to: TNKVTRFLARSRALA*LSSWIARSRQSRVV Trigger: TACCACTCTGCTCTGCCGACTGCGTGCTATCCAGCTAGATAGCCACGCCAAGGCCCTGGATCGTGCCAAGAAGCGCGTGACCTTGTTGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CAA 90 bp | CCATTTACCCTACGTTCAGGTGTCAAGCCCTGCCCTCAGCTGTGGGGACAAAATGATGACCAGCGGCGTTaGCGGGAGGTCGGTGGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: PFTLRSGVKPCPQLWGQNDDQRR*REVGGE Trigger: CTCACCACCGACCTCCCGCAAACGCCGCTGGTCATC...ATTTTGTCCCCACAGCTGAGGGCAGGGCTTGACACCTGAACGTAGGGTAAATGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CAA 90 bp | GTACTGAATGCCTGGAATGGGCCTCAGGATTTCGGGCTGCACTTGGGAACCACAAGGAAGTCCGCGATGTaGATGGGCAGCACGAGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VLNAWNGPQDFGLHLGTTRKSAM*MGSTRV Trigger: CACCCTCGTGCTGCCCATCAACATCGCGGACTTCCT...TGTGGTTCCCAAGTGCAGCCCGAAATCCTGAGGCCCATTCCAGGCATTCAGTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CAA 90 bp | GCTTCCCAGAAGTCTGAAGCTTATGAACACATTCCAGACACTTCTGAAGGCCACTACAGCACCGCAGAGTaGCCAGCCAGTCCCACGGCG | + |
|
Preference number: 5 (lower is better) Translates to: ASQKSEAYEHIPDTSEGHYSTAE*PASPTA Trigger: CGCCGTGGGACTGGCTGGCAACTCTGCGGTGCTGTA...GTGGCCTTCAGAAGTGTCTGGAATGTGTTCATAAGCTTCAGACTTCTGGGAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CAA 90 bp | CTGTTGGCTGGTGCACCACCCTGTGCAAAAGCAGCTCAGAAACGTTCTGTACACAGGCTAGAGAAAGTGTaGTACTGGTCGACGGCTACA | + |
|
Preference number: 5 (lower is better) Translates to: LLAGAPPCAKAAQKRSVHRLEKV*YWSTAT Trigger: TGTAGCCGTCGACCAGTACAACACTTTCTCTAGCCT...GTGTACAGAACGTTTCTGAGCTGCTTTTGCACAGGGTGGTGCACCAGCCAACAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS-3UTR CAA 90 bp | CTGTTTACCAGGGAGGTCATCCGTGGTGGAAAGCAAAGAAACAAAATACACAGAAAGGTCACGCGCTTCTaGGCACGATCCAGGGCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LFTREVIRGGKQRNKIHRKVTRF*ARSRAL Trigger: CAAGGCCCTGGATCGTGCCAAGAAGCGCGTGACCTT...TCTGTGTATTTTGTTTCTTTGCTTTCCACCACGGATGACCTCCCTGGTAAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS GCA 72 bp | CACCAGCGCCCACACCGCCAGACTGACAGCACGCGCTaGACCGTAAGTGCGCCCGGACACCCGGCGCGACTC | + |
|
Preference number: 6 (lower is better) Translates to: HQRPHRQTDSTR*TVSAPGHPARL Trigger: GAGTCGCGCCGGGTGTCCGGGCGCACTTACGGTGCAGCGCGTGCTGTCAGTCTGGCGGTGTGGGCGCTGGTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS TCA 72 bp | GCACGACCAGCGTCACCAGCGCCCACACCGCCAGACTaGCAGCACGCGCTGCACCGTAAGTGCGCCCGGACA | + |
|
Preference number: 6 (lower is better) Translates to: ARPASPAPTPPD*QHALHRKCART Trigger: TGTCCGGGCGCACTTACGGTGCAGCGCGTGCTGTCAGTCTGGCGGTGTGGGCGCTGGTGACGCTGGTCGTGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS GCA 72 bp | GGCTGCGGGAAGACCAGCACGCACTGGCGCCGACCCTaGTCCTCGTCCAGCCGAGCGAATACCGCAAAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GCGKTSTHWRRP*SSSSRANTAKG Trigger: GCCCTTTGCGGTATTCGCTCGGCTGGACGAGGAGCAGGGTCGGCGCCAGTGCGTGCTGGTCTTCCCGCAGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CAA 90 bp | ACCGCCAGTGGCTGCGGCAGCGGCAGAGGAGCCAGGCTGGACCCGTaGGGACAGCCCAAAGATGAGCCGCCGCAAGACACGTTGTCCCCT | + |
|
Preference number: 6 (lower is better) Translates to: TASGCGSGRGARLDP*GQPKDEPPQDTLSP Trigger: AGGGGACAACGTGTCTTGCGGCGGCTCATCTTTGGGCTGTCCCAACGGGTCCAGCCTGGCTCCTCTGCCGCTGCCGCAGCCACTGGCGGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS GCA 72 bp | GCGGCGTGCGCAGCAGTACGTACAGCACCGCAGAGTTaGCAGCCAGTCCCACGGCGCAAATTACCCCGTAGA | + |
|
Preference number: 6 (lower is better) Translates to: AACAAVRTAPQS*QPVPRRKLPRR Trigger: TCTACGGGGTAATTTGCGCCGTGGGACTGGCTGGCAACTCTGCGGTGCTGTACGTACTGCTGCGCACGCCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CAA 90 bp | GCCGCCACCAACAAGGTCACGCGCTTCTTGGCACGATCCAGGGCCTaGGCGTGGCTATCTAGCTGGATAGCACGCAGTCGGCAGAGCAGA | + |
|
Preference number: 6 (lower is better) Translates to: AATNKVTRFLARSRA*AWLSSWIARSRQSR Trigger: TCTGCTCTGCCGACTGCGTGCTATCCAGCTAGATAGCCACGCCAAGGCCCTGGATCGTGCCAAGAAGCGCGTGACCTTGTTGGTGGCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 72 bp | GTCACGCGCTTCTTGGCACGATCCAGGGCCTTGGCGTaGCTATCTAGCTGGATAGCACGCAGTCGGCAGAGC | + |
|
Preference number: 6 (lower is better) Translates to: VTRFLARSRALA*LSSWIARSRQS Trigger: GCTCTGCCGACTGCGTGCTATCCAGCTAGATAGCCACGCCAAGGCCCTGGATCGTGCCAAGAAGCGCGTGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 72 bp | CCAGAATCGCCGCCACCAACAAGGTCACGCGCTTCTTaGCACGATCCAGGGCCTTGGCGTGGCTATCTAGCT | + |
|
Preference number: 6 (lower is better) Translates to: PESPPPTRSRAS*HDPGPWRGYLA Trigger: AGCTAGATAGCCACGCCAAGGCCCTGGATCGTGCCAAGAAGCGCGTGACCTTGTTGGTGGCGGCGATTCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CAA 90 bp | AGGCACACAGCCAGAATCGCCGCCACCAACAAGGTCACGCGCTTCTaGGCACGATCCAGGGCCTTGGCGTGGCTATCTAGCTGGATAGCA | + |
|
Preference number: 6 (lower is better) Translates to: RHTARIAATNKVTRF*ARSRALAWLSSWIA Trigger: TGCTATCCAGCTAGATAGCCACGCCAAGGCCCTGGATCGTGCCAAGAAGCGCGTGACCTTGTTGGTGGCGGCGATTCTGGCTGTGTGCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CAA 72 bp | AACAAGGTCACGCGCTTCTTGGCACGATCCAGGGCCTaGGCGTGGCTATCTAGCTGGATAGCACGCAGTCGG | + |
|
Preference number: 6 (lower is better) Translates to: NKVTRFLARSRA*AWLSSWIARSR Trigger: CCGACTGCGTGCTATCCAGCTAGATAGCCACGCCAAGGCCCTGGATCGTGCCAAGAAGCGCGTGACCTTGTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CAA 72 bp | GGTGATGAAGTAAGAGATGCCGATGACCAGCGGCGTTaGCGGGAGGTCGGTGGTGAGGGCCACTATGGTACT | + |
|
Preference number: 6 (lower is better) Translates to: GDEVRDADDQRR*REVGGEGHYGT Trigger: AGTACCATAGTGGCCCTCACCACCGACCTCCCGCAAACGCCGCTGGTCATCGGCATCTCTTACTTCATCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 72 bp | GCAGTCGGCAGAGCAGAGTGGTATAGAGAGCACAGATaGTGGTCACCGGGATGGCAAAGCCCAATACTAGTG | + |
|
Preference number: 6 (lower is better) Translates to: AVGRAEWYREHR*WSPGWQSPILV Trigger: CACTAGTATTGGGCTTTGCCATCCCGGTGACCACCATCTGTGCTCTCTATACCACTCTGCTCTGCCGACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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| CDS CCA 72 bp | GTCGGCAGAGCAGAGTGGTATAGAGAGCACAGATGGTaGTCACCGGGATGGCAAAGCCCAATACTAGTGTGT | + |
|
Preference number: 6 (lower is better) Translates to: VGRAEWYREHRW*SPGWQSPILVC Trigger: ACACACTAGTATTGGGCTTTGCCATCCCGGTGACCACCATCTGTGCTCTCTATACCACTCTGCTCTGCCGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044180.5 |
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