Pregenerated sensors for NPB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044034Ensembl transcript IDs: ENSMUST00000061309.5, ENSMUST00000106194.8, ENSMUST00000106195.3
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TGGTGGGAGCTAGGGGCCAAACCCACACAGGGTCTGTaGTACTTCAAGCAAGACTGGGCATATGGGGGTTGG | + |
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Preference number: 3 (lower is better) Translates to: WWELGAKPTQGL*YFKQDWAYGGW Trigger: CCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCACAGACCCTGTGTGGGTTTGGCCCCTAGCTCCCACCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| 3UTR CCA 72 bp | AAACCCACACAGGGTCTGTGCTACTTCAAGCAAGACTaGGCATATGGGGGTTGGGGAGAGTCACCGGCCGCA | + |
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Preference number: 3 (lower is better) Translates to: KPTQGLCYFKQD*AYGGWGESPAA Trigger: TGCGGCCGGTGACTCTCCCCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCACAGACCCTGTGTGGGTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000061309.5 ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| 3UTR CCA 72 bp | TTCTTTATTAATTTAGCCATTTGCTATGGAGCATGGTaGGAGCTAGGGGCCAAACCCACACAGGGTCTGTGC | + |
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Preference number: 3 (lower is better) Translates to: FFINLAICYGAW*ELGAKPTQGLC Trigger: GCACAGACCCTGTGTGGGTTTGGCCCCTAGCTCCCACCATGCTCCATAGCAAATGGCTAAATTAATAAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| 3UTR CCA 72 bp | TGCTTCTTTATTAATTTAGCCATTTGCTATGGAGCATaGTGGGAGCTAGGGGCCAAACCCACACAGGGTCTG | + |
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Preference number: 3 (lower is better) Translates to: CFFINLAICYGA*WELGAKPTQGL Trigger: CAGACCCTGTGTGGGTTTGGCCCCTAGCTCCCACCATGCTCCATAGCAAATGGCTAAATTAATAAAGAAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS-3UTR TCA 90 bp | TGTGCTACTTCAAGCAAGACTGGGCATATGGGGGTTGGGGAGAGTCACCGGCCGTCGGGGTCACATCTTTaGCACACAGGGCGCTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: CATSSKTGHMGVGESHRPSGSHL*HTGRWG Trigger: GCCCCAGCGCCCTGTGTGTCAAAGATGTGACCCCGA...CGGCCGGTGACTCTCCCCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCACA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000106194.8 |
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| CDS-3UTR CCA 90 bp | AGCCATTTGCTATGGAGCATGGTGGGAGCTAGGGGCCAAACCCACACAGGGTCTCTGTTGAGTTGCCGCTaGCAGCTCTGCAGGTTCGGG | + |
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Preference number: 4 (lower is better) Translates to: SHLLWSMVGARGQTHTGSLLSCR*QLCRFG Trigger: CCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAG...AGACCCTGTGTGGGTTTGGCCCCTAGCTCCCACCATGCTCCATAGCAAATGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS-3UTR CCA 90 bp | CCACACAGGGTCTGTGCTACTTCAAGCAAGACTGGGCATATGGGGGTTGGGGAGCTGTTGAGTTGCCGCTaGCAGCTCTGCAGGTTCGGG | + |
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Preference number: 4 (lower is better) Translates to: PHRVCATSSKTGHMGVGELLSCR*QLCRFG Trigger: CCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAG...CTCCCCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCACAGACCCTGTGTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CCA 90 bp | CGAGTAGTGGTGGGGTCCCGCCGCGGGCTTGTACCACGCGAGGGCTaGCGGCAGGAGCAGCGCCAGGGCAGCGGCCACCAGCGTCCTACA | + |
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Preference number: 5 (lower is better) Translates to: RVVVGSRRGLVPREG*RQEQRQGSGHQRPT Trigger: TGTAGGACGCTGGTGGCCGCTGCCCTGGCGCTGCTCCTGCCGCCAGCCCTCGCGTGGTACAAGCCCGCGGCGGGACCCCACCACTACTCG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061309.5 ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS-3UTR CAA 90 bp | GGAGCATGGTGGGAGCTAGGGGCCAAACCCACACAGGGTCTGTGCTACTTCAAGGGTCCCGCCGCGGGCTaGTACCACGCGAGGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: GAWWELGAKPTQGLCYFKGPAAG*YHARAG Trigger: GCCAGCCCTCGCGTGGTACAAGCCCGCGGCGGGACC...CTTGAAGTAGCACAGACCCTGTGTGGGTTTGGCCCCTAGCTCCCACCATGCTCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS-3UTR CAA 90 bp | CCCACACAGGGTCTGTGCTACTTCAAGCAAGACTGGGCATATGGGGGTTGGGGAGGTCCCGCCGCGGGCTaGTACCACGCGAGGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: PTQGLCYFKQDWAYGGWGGPAAG*YHARAG Trigger: GCCAGCCCTCGCGTGGTACAAGCCCGCGGCGGGACC...TCCCCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCACAGACCCTGTGTGGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000061309.5 ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS-3UTR CAA 90 bp | AGGGTCTGTGCTACTTCAAGCAAGACTGGGCATATGGGGGTTGGGGAGAGTCACGGTCCCGCCGCGGGCTaGTACCACGCGAGGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: RVCATSSKTGHMGVGESHGPAAG*YHARAG Trigger: GCCAGCCCTCGCGTGGTACAAGCCCGCGGCGGGACC...GTGACTCTCCCCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCACAGACCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000061309.5 ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS-3UTR CAA 90 bp | CAAGCAAGACTGGGCATATGGGGGTTGGGGAGAGTCACCGGCCGCAGGGTTGGGAAAGTCCCTCGGCTGTaGAGTTGCCGCTGGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: QARLGIWGLGRVTGRRVGKVPRL*SCRWQL Trigger: GAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTT...CCCAACCCTGCGGCCGGTGACTCTCCCCAACCCCCATATGCCCAGTCTTGCTTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS-3UTR CAA 90 bp | CTTCAAGCAAGACTGGGCATATGGGGGTTGGGGAGAGTCACCGGCCGCAGGGTTCCCTCGGCTGTTGAGTaGCCGCTGGCAGCTAAGGCT | + |
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Preference number: 5 (lower is better) Translates to: LQARLGIWGLGRVTGRRVPSAVE*PLAAKA Trigger: AGCCTTAGCTGCCAGCGGCAACTCAACAGCCGAGGG...AACCCTGCGGCCGGTGACTCTCCCCAACCCCCATATGCCCAGTCTTGCTTGAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061309.5 |
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| CDS-3UTR CAA 90 bp | GTGCTACTTCAAGCAAGACTGGGCATATGGGGGTTGGGGAGAGTCACCGGCCGCAAAGTCCCTCGGCTGTaGAGTTGCCGCTGGCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: VLLQARLGIWGLGRVTGRKVPRL*SCRWQL Trigger: GAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTT...GCGGCCGGTGACTCTCCCCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CCA 90 bp | ACGTCCGCTTTACACTGGAAAGTCCCTCGGCTGTTGAGTTGCCGCTaGCAGCTCTGCAGGTTCGGGGTCACATCTTTGACACACAGGGCG | + |
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Preference number: 5 (lower is better) Translates to: TSALHWKVPRLLSCR*QLCRFGVTSLTHRA Trigger: CGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106194.8 |
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| CDS CCA 90 bp | ACGTCCGCTTTACACTGGAAAGTCCCTCGGCTGTTGAGTTGCCGCTaGCAGCTCTGCAGGTTCGGGGTCACATCTTTGACACACAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: TSALHWKVPRLLSCR*QLCRFGVTSLTHRA Trigger: TGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106195.3 |
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| CDS-3UTR CAA 90 bp | ACACAGGGTCTGTGCTACTTCAAGCAAGACTGGGCATATGGGGGTTGGGGAGAGAAAGTCCCTCGGCTGTaGAGTTGCCGCTGGCAGCTA | + |
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Preference number: 5 (lower is better) Translates to: TQGLCYFKQDWAYGGWGEKVPRL*SCRWQL Trigger: TAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTT...CTCTCCCCAACCCCCATATGCCCAGTCTTGCTTGAAGTAGCACAGACCCTGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000061309.5 |
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| CDS GCA 90 bp | AAGAAGACGTCCGCTTTACACTGGAAAGTCCCTCGGCTGTTGAGTTaGCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTTGACACAC | + |
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Preference number: 5 (lower is better) Translates to: KKTSALHWKVPRLLS*RWQLCRFGVTSLTH Trigger: GTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGTCTTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CCA 72 bp | GTGGGGTCCCGCCGCGGGCTTGTACCACGCGAGGGCTaGCGGCAGGAGCAGCGCCAGGGCAGCGGCCACCAG | + |
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Preference number: 6 (lower is better) Translates to: VGSRRGLVPREG*RQEQRQGSGHQ Trigger: CTGGTGGCCGCTGCCCTGGCGCTGCTCCTGCCGCCAGCCCTCGCGTGGTACAAGCCCGCGGCGGGACCCCAC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061309.5 ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CCA 72 bp | GCTGGAGACTCGGAGCGTCGCGTGGACGGGAACCTGTaGAAACTCGACAGTAGCCCCGAGGCGCGGCCCACC | + |
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Preference number: 6 (lower is better) Translates to: AGDSERRVDGNL*KLDSSPEARPT Trigger: GGTGGGCCGCGCCTCGGGGCTACTGTCGAGTTTCCACAGGTTCCCGTCCACGCGACGCTCCGAGTCTCCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000061309.5 ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS GCA 72 bp | GGGCAAGGCTCCTTACGCTGGGGCGCATCTCTAAATTaGGCAGAGGTCCGGTTCCCACCCGGAGTGCTGGAG | + |
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Preference number: 6 (lower is better) Translates to: GQGSLRWGASLN*AEVRFPPGVLE Trigger: CTCCAGCACTCCGGGTGGGAACCGGACCTCTGCGCAATTTAGAGATGCGCCCCAGCGTAAGGAGCCTTGCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106195.3 |
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| CDS CAA 72 bp | TGCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTaGACACACAGGGCAAGGCTCCTTACGCTGGGGCGC | + |
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Preference number: 6 (lower is better) Translates to: CRWQLCRFGVTS*THRARLLTLGR Trigger: GCGCCCCAGCGTAAGGAGCCTTGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106195.3 |
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| CDS CAA 90 bp | TGCCGCTGGCAGCTAAGGCTCCTTACGCTGGGGCGCATCTCTAAATaGCGCAGAGGTCCGGTTCCCACCCGGAGTGCTGGAGACTCGGAG | + |
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Preference number: 6 (lower is better) Translates to: CRWQLRLLTLGRISK*RRGPVPTRSAGDSE Trigger: CTCCGAGTCTCCAGCACTCCGGGTGGGAACCGGACCTCTGCGCAATTTAGAGATGCGCCCCAGCGTAAGGAGCCTTAGCTGCCAGCGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061309.5 |
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| CDS CAA 90 bp | GGGGTCACATCTTTGACACACAGGGCGCTGGGGCGCATCTCTAAATaGCGCAGAGGTCCGGTTCCCACCCGGAGTGCTGGAGACTCGGAG | + |
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Preference number: 6 (lower is better) Translates to: GVTSLTHRALGRISK*RRGPVPTRSAGDSE Trigger: CTCCGAGTCTCCAGCACTCCGGGTGGGAACCGGACCTCTGCGCAATTTAGAGATGCGCCCCAGCGCCCTGTGTGTCAAAGATGTGACCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106194.8 |
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| CDS CAA 72 bp | AGGGCAAGGCTCCTTACGCTGGGGCGCATCTCTAAATaGCGCAGAGGTCCGGTTCCCACCCGGAGTGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: RARLLTLGRISK*RRGPVPTRSAG Trigger: TCCAGCACTCCGGGTGGGAACCGGACCTCTGCGCAATTTAGAGATGCGCCCCAGCGTAAGGAGCCTTGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106195.3 |
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| CDS CAA 90 bp | TTGACACACAGGGCAAGGCTCCTTACGCTGGGGCGCATCTCTAAATaGCGCAGAGGTCCGGTTCCCACCCGGAGTGCTGGAGACTCGGAG | + |
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Preference number: 6 (lower is better) Translates to: LTHRARLLTLGRISK*RRGPVPTRSAGDSE Trigger: CTCCGAGTCTCCAGCACTCCGGGTGGGAACCGGACCTCTGCGCAATTTAGAGATGCGCCCCAGCGTAAGGAGCCTTGCCCTGTGTGTCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106195.3 |
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| CDS TCA 72 bp | GCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTTaGCACACAGGGCGCTGGGGCGCATCTCTAAATTGC | + |
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Preference number: 6 (lower is better) Translates to: AAGSSAGSGSHL*HTGRWGASLNC Trigger: GCAATTTAGAGATGCGCCCCAGCGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106194.8 |
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| CDS CAA 72 bp | CAGCTAAGGCTCCTTACGCTGGGGCGCATCTCTAAATaGCGCAGAGGTCCGGTTCCCACCCGGAGTGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: QLRLLTLGRISK*RRGPVPTRSAG Trigger: TCCAGCACTCCGGGTGGGAACCGGACCTCTGCGCAATTTAGAGATGCGCCCCAGCGTAAGGAGCCTTAGCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061309.5 |
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| CDS CAA 72 bp | GTCCGCTTTACACTGGAAAGTCCCTCGGCTGTTGAGTaGCCGCTGGCAGCTAAGGCTCCTTACGCTGGGGCG | + |
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Preference number: 6 (lower is better) Translates to: VRFTLESPSAVE*PLAAKAPYAGA Trigger: CGCCCCAGCGTAAGGAGCCTTAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061309.5 |
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| CDS CAA 72 bp | TCTTTGACACACAGGGCGCTGGGGCGCATCTCTAAATaGCGCAGAGGTCCGGTTCCCACCCGGAGTGCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SLTHRALGRISK*RRGPVPTRSAG Trigger: TCCAGCACTCCGGGTGGGAACCGGACCTCTGCGCAATTTAGAGATGCGCCCCAGCGCCCTGTGTGTCAAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106194.8 |
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| CDS TCA 72 bp | AGACGTCCGCTTTACACTGGAAAGTCCCTCGGCTGTTaGGTTGCCGCTGGCAGCTCTGCAGGTTCGGGGTCA | + |
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Preference number: 6 (lower is better) Translates to: RRPLYTGKSLGC*VAAGSSAGSGS Trigger: TGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CAA 72 bp | GTCCGCTTTACACTGGAAAGTCCCTCGGCTGTTGAGTaGCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATC | + |
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Preference number: 6 (lower is better) Translates to: VRFTLESPSAVE*PLAALQVRGHI Trigger: GATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CAA 72 bp | AAGACGTCCGCTTTACACTGGAAAGTCCCTCGGCTGTaGAGTTGCCGCTGGCAGCTCTGCAGGTTCGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: KTSALHWKVPRL*SCRWQLCRFGV Trigger: GACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGTCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CAA 72 bp | TGCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTaGACACACAGGGCGCTGGGGCGCATCTCTAAATTG | + |
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Preference number: 6 (lower is better) Translates to: CRWQLCRFGVTS*THRALGRISKL Trigger: CAATTTAGAGATGCGCCCCAGCGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106194.8 |
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| CDS CAA 90 bp | CTGTTGAGTTGCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTaGACACACAGGGCGCTGGGGCGCATCTCTAAATTGCGCAGAGGT | + |
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Preference number: 6 (lower is better) Translates to: LLSCRWQLCRFGVTS*THRALGRISKLRRG Trigger: ACCTCTGCGCAATTTAGAGATGCGCCCCAGCGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106194.8 |
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| CDS CAA 90 bp | CTGTTGAGTTGCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTaGACACACAGGGCAAGGCTCCTTACGCTGGGGCGCATCTCTAAA | + |
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Preference number: 6 (lower is better) Translates to: LLSCRWQLCRFGVTS*THRARLLTLGRISK Trigger: TTTAGAGATGCGCCCCAGCGTAAGGAGCCTTGCCCTGTGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106195.3 |
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| CDS GCA 72 bp | TCCGCTTTACACTGGAAAGTCCCTCGGCTGTTGAGTTaGCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCT | + |
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Preference number: 6 (lower is better) Translates to: SALHWKVPRLLS*RWQLCRFGVTS Trigger: AGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CAA 90 bp | AGCGACAAGAAGACGTCCGCTTTACACTGGAAAGTCCCTCGGCTGTaGAGTTGCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTTG | + |
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Preference number: 6 (lower is better) Translates to: SDKKTSALHWKVPRL*SCRWQLCRFGVTSL Trigger: CAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGTCTTCTTGTCGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CAA 90 bp | CAAGAAGACGTCCGCTTTACACTGGAAAGTCCCTCGGCTGTTGAGTaGCCGCTGGCAGCTCTGCAGGTTCGGGGTCACATCTTTGACACA | + |
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Preference number: 6 (lower is better) Translates to: QEDVRFTLESPSAVE*PLAALQVRGHIFDT Trigger: TGTGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAAAGCGGACGTCTTCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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| CDS CCA 72 bp | TTACACTGGAAAGTCCCTCGGCTGTTGAGTTGCCGCTaGCAGCTCTGCAGGTTCGGGGTCACATCTTTGACA | + |
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Preference number: 6 (lower is better) Translates to: LHWKVPRLLSCR*QLCRFGVTSLT Trigger: TGTCAAAGATGTGACCCCGAACCTGCAGAGCTGCCAGCGGCAACTCAACAGCCGAGGGACTTTCCAGTGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000106194.8 ENSMUST00000106195.3 |
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