Pregenerated sensors for NPAS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001988Ensembl transcript IDs: ENSMUST00000002053.9, ENSMUST00000210748.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GCATGGTGTTTAATTCTCAAGAATGACTCCAGGACTTaGTCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACA | + |
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Preference number: 3 (lower is better) Translates to: AWCLILKNDSRT*SVSQVWPSGVT Trigger: TGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCATTCTTGAGAATTAAACACCATGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR TCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGTCCGGGCGGGGCCTTaGCCATCAGCCCAGGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCVRAGP*PSAQAG Trigger: TCCTGCCTGGGCTGATGGTCAAGGCCCCGCCCGGAC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTTCTTTGCGCTGCGCCTaGAGGCAGGGTCCGGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCSLRCA*RQGPGG Trigger: CCCGCCCGGACCCTGCCTGCAGGCGCAGCGCAAAGA...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGGATGGTGCCTGGGGTaGACAGGCCCCGCACAACGG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCGWCLG*TGPAQR Trigger: CCGTTGTGCGGGGCCTGTGCACCCCAGGCACCATCC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGGCCATAGCGGATGGTaGCTGGGGTGCACAGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCGHSGW*LGCTGP Trigger: GGGGCCTGTGCACCCCAGGCACCATCCGCTATGGCC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGGCAGCACTGGATCATaGTTCAGGGCTCCCGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCGSTGS*FRAPAR Trigger: CCGGGCGGGAGCCCTGAAGCATGATCCAGTGCTGCC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTTGGAAGCGAGGGGCCTaGGCCCAGCCTGTGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCWKRGA*AQPVQM Trigger: CATCTGCACAGGCTGGGCGCAGGCCCCTCGCTTCCA...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGACGCCTTGTCCAGCTaGCTGGAGATGGCACCGGGC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCDALSS*LEMAPG Trigger: GCCCGGTGCCATCTCCAGCCAGCTGGACAAGGCGTC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCTCAGCCAGTGGGGCTaGGGGCAGCGTGTGTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCLSQWG*GQRVSK Trigger: CTTGGACACACGCTGCCCCCAGCCCCACTGGCTGAG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGAGGCTCTTCCTCTGTaGGCTCTGGGCCTGGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCEALPL*ALGLAW Trigger: CCAGGCCAGGCCCAGAGCCCACAGAGGAAGAGCCTC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTATAGCGGATGGTGCCTaGGGTGCACAGGCCCCGCAC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCIADGA*GAQAPH Trigger: GTGCGGGGCCTGTGCACCCCAGGCACCATCCGCTAT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCAGGGCCATAGCGGATaGTGCCTGGGGTGCACAGGC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCQGHSG*CLGCTG Trigger: GCCTGTGCACCCCAGGCACCATCCGCTATGGCCCTG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR TCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCGTTTGCCTCGGGCCTaGGGGTCCTTGTCCTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRLPRA*GSLSLS Trigger: GGACAAGGACAAGGACCCTCAGGCCCGAGGCAAACG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR TCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTATGAAGGAGGGCGGGTaGGGGGTCTCCGGGAGTTGT | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCMKEGG*GVSGSC Trigger: ACAACTCCCGGAGACCCCTCACCCGCCCTCCTTCAT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGACTTCTCTTTGCGCTaGGCCTGCAGGCAGGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCDFSLR*ACRQGP Trigger: CGGACCCTGCCTGCAGGCGCAGCGCAAAGAGAAGTC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTTGCGGGACTTCTCTTTaGGCTGCGCCTGCAGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCCGTSL*AAPAGR Trigger: CCTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCA...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGCCAGCGCGCAGCGTTaGGGGACTTCTCTTTGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCASAQR*GTSLCA Trigger: AGCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCCTTGTCCAGCTGGCTaGAGATGGCACCGGGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCPCPAG*RWHRAE Trigger: CTCTGCCCGGTGCCATCTCCAGCCAGCTGGACAAGG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGCTCTGGGCCTGGCCTaGATGGCTCCTCCTGAGACA | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCALGLA*MAPPET Trigger: TGTCTCAGGAGGAGCCATCCAGGCCAGGCCCAGAGC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCCGAGGTGGAGCCGGTaGATCCGAGAGCTCCTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCPRWSR*IRELLF Trigger: GAAGAGGAGCTCTCGGATCCACCGGCTCCACCTCGG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTAGGGTAAAAGGCCTCTaGAAGCGAGGGGCCTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRVKGL*KRGACA Trigger: GGCGCAGGCCCCTCGCTTCCAGAGGCCTTTTACCCT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR TCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGCGTCCCACAAGCTCTaGGGGCCCCATGTCCATATG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCASHKL*GPHVHM Trigger: CATATGGACATGGGGCCCTCAGAGCTTGTGGGACGC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCGTTCCCGGCCACAGTaGCTACAGACTGCAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRSRPQ*LQTAAT Trigger: TGTGGCTGCAGTCTGTAGCCACTGTGGCCGGGAACG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTTCCTTGTCCTTGTCCTaGTCCGCAGGCACAGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCSLSLS*SAGTAC Trigger: GCAGGCTGTGCCTGCGGACCAGGACAAGGACAAGGA...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGAATTCTGGCCGAGGTaGAGCCGGTGGATCCGAGAG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCEFWPR*SRWIRE Trigger: CTCTCGGATCCACCGGCTCCACCTCGGCCAGAATTC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR TCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCGTCAGCTCCACCTGTaGGAGACCCAGGTAGATGGA | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRQLHL*ETQVDG Trigger: TCCATCTACCTGGGTCTCTCACAGGTGGAGCTGACG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCTGCTTCCCGTCAACTaGAGGCTCTTCCTCTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCLLPVN*RLFLCG Trigger: CCCACAGAGGAAGAGCCTCCAGTTGACGGGAAGCAG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR TCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTTTCTCCACTGTCCTCTaGGCCTCTAGCTTCCTTCGG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCFSTVL*ASSFLR Trigger: CCGAAGGAAGCTAGAGGCTCAGAGGACAGTGGAGAA...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTAGGTCCAGATGGCTTTaGCGGATCCTGGTTGCATCC | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRSRWL*RILVAS Trigger: GGATGCAACCAGGATCCGCCAAAGCCATCTGGACCT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGGCTTTGGCGGATCCTaGTTGCATCCTGTCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCGFGGS*LHPVHE Trigger: TTCATGGACAGGATGCAACCAGGATCCGCCAAAGCC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR GCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTACAATCATGTGTCCGTaGAAAGGCAGCTCAGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCTIMCP*KGSSAS Trigger: ACTGGCTGAGCTGCCTTTGCACGGACACATGATTGT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTACAATAGCTGGAAGCTaGAAGGCATCCAGGGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCTIAGS*KASRGV Trigger: AACACCCCTGGATGCCTTCCAGCTTCCAGCTATTGT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCTGAGACACAATAGCTaGAAGCTGGAAGGCATCCAG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCLRHNS*KLEGIQ Trigger: CTGGATGCCTTCCAGCTTCCAGCTATTGTGTCTCAG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CCA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTAGAAATTTCCCTTCCTaGTTCAAAGCGAACACGAAG | + |
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Preference number: 4 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRNFPS*FKANTK Trigger: CTTCGTGTTCGCTTTGAACCAGGAAGGGAAATTTCT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 90 bp | CGAAGAACTCCAGATTTTCCTTCCCGCGTCGCCAGCGCGCAGCGTTaGGGGACTTCTCTTTGCGCTGCGCCTGCAGGCAGGGTCCGGGCG | + |
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Preference number: 5 (lower is better) Translates to: RRTPDFPSRVASAQR*GTSLCAAPAGRVRA Trigger: CGCCCGGACCCTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGCGACGCGGGAAGGAAAATCTGGAGTTCTTCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 90 bp | GATGTGGATACATCAGGCTCAACTCCGCAGGGCCATAGCGGATGGTaGCTGGGGTGCACAGGCCCCGCACAACGGGTGGCAGGAAGCCTG | + |
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Preference number: 5 (lower is better) Translates to: DVDTSGSTPQGHSGW*LGCTGPAQRVAGSL Trigger: CAGGCTTCCTGCCACCCGTTGTGCGGGGCCTGTGCACCCCAGGCACCATCCGCTATGGCCCTGCGGAGTTGAGCCTGATGTATCCACATC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 90 bp | TGGATACATCAGGCTCAACTCCGCAGGGCCATAGCGGATGGTGCCTaGGGTGCACAGGCCCCGCACAACGGGTGGCAGGAAGCCTGCATG | + |
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Preference number: 5 (lower is better) Translates to: WIHQAQLRRAIADGA*GAQAPHNGWQEACM Trigger: CATGCAGGCTTCCTGCCACCCGTTGTGCGGGGCCTGTGCACCCCAGGCACCATCCGCTATGGCCCTGCGGAGTTGAGCCTGATGTATCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS TCA 90 bp | GCTTCCTTCGGGCTGGCCTCCACTTTGATGCGTTTGCCTCGGGCCTaGGGGTCCTTGTCCTTGTCCTGGTCCGCAGGCACAGCCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: ASFGLASTLMRLPRA*GSLSLSWSAGTACF Trigger: GAAGCAGGCTGTGCCTGCGGACCAGGACAAGGACAAGGACCCTCAGGCCCGAGGCAAACGCATCAAAGTGGAGGCCAGCCCGAAGGAAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 90 bp | CATGCGGACAAAGAAGGACCGCTCTTGGGCTCGGAAGGCAGGCGATaGCTCGGTGGGGCTGGCTTCAATCTCAGGGGTGTCCACCAGCGA | + |
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Preference number: 5 (lower is better) Translates to: HADKEGPLLGSEGRR*LGGAGFNLRGVHQR Trigger: TCGCTGGTGGACACCCCTGAGATTGAAGCCAGCCCCACCGAGGCATCGCCTGCCTTCCGAGCCCAAGAGCGGTCCTTCTTTGTCCGCATG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 90 bp | GAAGACAATCATGTGTCCGTGCAAAGGCAGCTCAGCCAGTGGGGCTaGGGGCAGCGTGTGTCCAAGGGCTACAAGACCCAGGGCTCGGGC | + |
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Preference number: 5 (lower is better) Translates to: EDNHVSVQRQLSQWG*GQRVSKGYKTQGSG Trigger: GCCCGAGCCCTGGGTCTTGTAGCCCTTGGACACACGCTGCCCCCAGCCCCACTGGCTGAGCTGCCTTTGCACGGACACATGATTGTCTTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 90 bp | GAGGCGGAAGACAATCATGTGTCCGTGCAAAGGCAGCTCAGCCAGTaGGGCTGGGGGCAGCGTGTGTCCAAGGGCTACAAGACCCAGGGC | + |
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Preference number: 5 (lower is better) Translates to: EAEDNHVSVQRQLSQ*GWGQRVSKGYKTQG Trigger: GCCCTGGGTCTTGTAGCCCTTGGACACACGCTGCCCCCAGCCCCACTGGCTGAGCTGCCTTTGCACGGACACATGATTGTCTTCCGCCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 90 bp | AAAGGCCTCTGGAAGCGAGGGGCCTGCGCCCAGCCTGTGCAGATGTaGATACATCAGGCTCAACTCCGCAGGGCCATAGCGGATGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: KGLWKRGACAQPVQM*IHQAQLRRAIADGA Trigger: GGCACCATCCGCTATGGCCCTGCGGAGTTGAGCCTGATGTATCCACATCTGCACAGGCTGGGCGCAGGCCCCTCGCTTCCAGAGGCCTTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 90 bp | GAGGGGTCTCCGGGAGTTGTCAAGCCCCACGGCAGCACTGGATCATaGTTCAGGGCTCCCGCCCGGATGACAGAAGTGAATTCTGGCCGA | + |
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Preference number: 5 (lower is better) Translates to: EGSPGVVKPHGSTGS*FRAPARMTEVNSGR Trigger: TCGGCCAGAATTCACTTCTGTCATCCGGGCGGGAGCCCTGAAGCATGATCCAGTGCTGCCGTGGGGCTTGACAACTCCCGGAGACCCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS TCA 90 bp | AGGGCTACAAGACCCAGGGCTCGGGCCCTCAGGCGCCCTGTCACATaGATGACCTTGTACCCCGAGGCTTTGACATTCAGGCCCCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: RATRPRARALRRPVT*MTLYPEALTFRPLL Trigger: CAAGAGGGGCCTGAATGTCAAAGCCTCGGGGTACAAGGTCATTCATGTGACAGGGCGCCTGAGGGCCCGAGCCCTGGGTCTTGTAGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 90 bp | TGGATCATGCTTCAGGGCTCCCGCCCGGATGACAGAAGTGAATTCTaGCCGAGGTGGAGCCGGTGGATCCGAGAGCTCCTCTTCTCCACT | + |
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Preference number: 5 (lower is better) Translates to: WIMLQGSRPDDRSEF*PRWSRWIRELLFST Trigger: AGTGGAGAAGAGGAGCTCTCGGATCCACCGGCTCCACCTCGGCCAGAATTCACTTCTGTCATCCGGGCGGGAGCCCTGAAGCATGATCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGGTCCGGGCGGGGCCTaGACCATCAGCCCAGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCGPGGA*TISPGR Trigger: CCTGCCTGGGCTGATGGTCAAGGCCCCGCCCGGACC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS TCA 90 bp | AGGTGGAGCCGGTGGATCCGAGAGCTCCTCTTCTCCACTGTCCTCTaGGCCTCTAGCTTCCTTCGGGCTGGCCTCCACTTTGATGCGTTT | + |
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Preference number: 5 (lower is better) Translates to: RWSRWIRELLFSTVL*ASSFLRAGLHFDAF Trigger: AAACGCATCAAAGTGGAGGCCAGCCCGAAGGAAGCTAGAGGCTCAGAGGACAGTGGAGAAGAGGAGCTCTCGGATCCACCGGCTCCACCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCGCCAGCGCGCAGCGTaGCGGGACTTCTCTTTGCGC | + |
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Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRQRAA*RDFSLR Trigger: GCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGCG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGGGCTGGCCTCCACTTaGATGCGTTTGCCTCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCGLAST*MRLPRA Trigger: GGCCCGAGGCAAACGCATCAAAGTGGAGGCCAGCCC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTTTGCGGGACTTCTCTTaGCGCTGCGCCTGCAGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCLRDFS*RCACRQ Trigger: CTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCAA...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTCGCACGATGGACGCCTaGTCCAGCTGGCTGGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCRTMDA*SSWLEM Trigger: CATCTCCAGCCAGCTGGACAAGGCGTCCATCGTGCG...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS TCA 90 bp | ATCCTGTCCATGAACAAACTGGTAGCAGCTGCGTCCCACAAGCTCTaGGGGCCCCATGTCCATATGGTCGCTAACTCTGCTCTCACAAGC | + |
|
Preference number: 5 (lower is better) Translates to: ILSMNKLVAAASHKL*GPHVHMVANSALTS Trigger: GCTTGTGAGAGCAGAGTTAGCGACCATATGGACATGGGGCCCTCAGAGCTTGTGGGACGCAGCTGCTACCAGTTTGTTCATGGACAGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGGCAGAGGGAGCAGCTaGGCTAGCTCGAAGAACTCC | + |
|
Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCGRGSS*ASSKNS Trigger: GGAGTTCTTCGAGCTAGCCAAGCTGCTCCCTCTGCC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTAAAGAAGGACCGCTCTaGGGCTCGGAAGGCAGGCGA | + |
|
Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCKEGPL*GSEGRR Trigger: TCGCCTGCCTTCCGAGCCCAAGAGCGGTCCTTCTTT...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTGTCACCACCTGCCCTTaGTCCAGCAGGTCCAGATGG | + |
|
Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCVTTCP*SSRSRW Trigger: CCATCTGGACCTGCTGGACAAAGGGCAGGTGGTGAC...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS-3UTR CAA 90 bp | ATGACTCCAGGACTTGATCTGTGTCTCAGGTTTGGCCCTCTGGTGTTACACTGTTTTGGCGGATCCTGGTaGCATCCTGTCCATGAACAA | + |
|
Preference number: 5 (lower is better) Translates to: MTPGLDLCLRFGPLVLHCFGGSW*HPVHEQ Trigger: TTGTTCATGGACAGGATGCAACCAGGATCCGCCAAA...ACAGTGTAACACCAGAGGGCCAAACCTGAGACACAGATCAAGTCCTGGAGTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | CGCGTCGCCAGCGCGCAGCGTTGCGGGACTTCTCTTTaGGCTGCGCCTGCAGGCAGGGTCCGGGCGGGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: RVASAQRCGTSL*AAPAGRVRAGP Trigger: AGGCCCCGCCCGGACCCTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGCGACGCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 72 bp | GACTTCAGAGACCAGAGCCACAGGGCCTCGGCGGCCTaGGGCGAGGCCAGCCGGAGGCCCGACGGCCCGCAA | + |
|
Preference number: 6 (lower is better) Translates to: DFRDQSHRASAA*GEASRRPDGPQ Trigger: TTGCGGGCCGTCGGGCCTCCGGCTGGCCTCGCCCCAGGCCGCCGAGGCCCTGTGGCTCTGGTCTCTGAAGTC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS TCA 72 bp | CCCAGGGGACGCCGGCTCCACGGCCGCCCCCGCACTTaGCTTCACCTCGGCCACCGCTTCTGGGATAGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: PRGRRLHGRPRT*LHLGHRFWDRG Trigger: CCCCCTATCCCAGAAGCGGTGGCCGAGGTGAAGTCAAGTGCGGGGGCGGCCGTGGAGCCGGCGTCCCCTGGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CAA 90 bp | TTTTCCTTCCCGCGTCGCCAGCGCGCAGCGTTGCGGGACTTCTCTTaGCGCTGCGCCTGCAGGCAGGGTCCGGGCGGGGCCTTGACCATC | + |
|
Preference number: 6 (lower is better) Translates to: FSFPRRQRAALRDFS*RCACRQGPGGALTI Trigger: GATGGTCAAGGCCCCGCCCGGACCCTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGCGACGCGGGAAGGAAAA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | TCAACTCCGCAGGGCCATAGCGGATGGTGCCTGGGGTaGACAGGCCCCGCACAACGGGTGGCAGGAAGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: STPQGHSGWCLG*TGPAQRVAGSL Trigger: CAGGCTTCCTGCCACCCGTTGTGCGGGGCCTGTGCACCCCAGGCACCATCCGCTATGGCCCTGCGGAGTTGA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 72 bp | CAGGCTCAACTCCGCAGGGCCATAGCGGATGGTGCCTaGGGTGCACAGGCCCCGCACAACGGGTGGCAGGAA | + |
|
Preference number: 6 (lower is better) Translates to: QAQLRRAIADGA*GAQAPHNGWQE Trigger: TTCCTGCCACCCGTTGTGCGGGGCCTGTGCACCCCAGGCACCATCCGCTATGGCCCTGCGGAGTTGAGCCTG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | CCAGATTTTCCTTCCCGCGTCGCCAGCGCGCAGCGTTaGGGGACTTCTCTTTGCGCTGCGCCTGCAGGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: PDFPSRVASAQR*GTSLCAAPAGR Trigger: CCTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGCGACGCGGGAAGGAAAATCTGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | ACATCAGGCTCAACTCCGCAGGGCCATAGCGGATGGTaGCTGGGGTGCACAGGCCCCGCACAACGGGTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: TSGSTPQGHSGW*LGCTGPAQRVA Trigger: TGCCACCCGTTGTGCGGGGCCTGTGCACCCCAGGCACCATCCGCTATGGCCCTGCGGAGTTGAGCCTGATGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CAA 90 bp | TCGAAGAACTCCAGATTTTCCTTCCCGCGTCGCCAGCGCGCAGCGTaGCGGGACTTCTCTTTGCGCTGCGCCTGCAGGCAGGGTCCGGGC | + |
|
Preference number: 6 (lower is better) Translates to: SKNSRFSFPRRQRAA*RDFSLRCACRQGPG Trigger: GCCCGGACCCTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGCGACGCGGGAAGGAAAATCTGGAGTTCTTCGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 72 bp | GGGGTCTCCGGGAGTTGTCAAGCCCCACGGCAGCACTaGATCATGCTTCAGGGCTCCCGCCCGGATGACAGA | + |
|
Preference number: 6 (lower is better) Translates to: GVSGSCQAPRQH*IMLQGSRPDDR Trigger: TCTGTCATCCGGGCGGGAGCCCTGAAGCATGATCCAGTGCTGCCGTGGGGCTTGACAACTCCCGGAGACCCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 72 bp | CGGATAGGGCAAGCCCAGCGTAGGGTAAAAGGCCTCTaGAAGCGAGGGGCCTGCGCCCAGCCTGTGCAGATG | + |
|
Preference number: 6 (lower is better) Translates to: RIGQAQRRVKGL*KRGACAQPVQM Trigger: CATCTGCACAGGCTGGGCGCAGGCCCCTCGCTTCCAGAGGCCTTTTACCCTACGCTGGGCTTGCCCTATCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CAA 72 bp | TCCAGATTTTCCTTCCCGCGTCGCCAGCGCGCAGCGTaGCGGGACTTCTCTTTGCGCTGCGCCTGCAGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: SRFSFPRRQRAA*RDFSLRCACRQ Trigger: CTGCCTGCAGGCGCAGCGCAAAGAGAAGTCCCGCAACGCTGCGCGCTGGCGACGCGGGAAGGAAAATCTGGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | GGGTCCTTGTCCTTGTCCTGGTCCGCAGGCACAGCCTaGTTCCCGTCAACTGGAGGCTCTTCCTCTGTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: GSLSLSWSAGTA*FPSTGGSSSVG Trigger: GCCCACAGAGGAAGAGCCTCCAGTTGACGGGAAGCAGGCTGTGCCTGCGGACCAGGACAAGGACAAGGACCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 72 bp | AGGGTGGACTTCATGCGGACAAAGAAGGACCGCTCTTaGGCTCGGAAGGCAGGCGATGCCTCGGTGGGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: RVDFMRTKKDRS*ARKAGDASVGL Trigger: CAGCCCCACCGAGGCATCGCCTGCCTTCCGAGCCCAAGAGCGGTCCTTCTTTGTCCGCATGAAGTCCACCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CAA 72 bp | CTGCATGAAGGAGGGCGGGTGAGGGGTCTCCGGGAGTaGTCAAGCCCCACGGCAGCACTGGATCATGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LHEGGRVRGLRE*SSPTAALDHAS Trigger: TGAAGCATGATCCAGTGCTGCCGTGGGGCTTGACAACTCCCGGAGACCCCTCACCCGCCCTCCTTCATGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | GTAGGGGGACCGATGCTTGCAGCCCGCAATCCAAGTTaGTCTAGGACCTCCGAGTGGTCCCCAGGATGGATG | + |
|
Preference number: 6 (lower is better) Translates to: VGGPMLAARNPS*SRTSEWSPGWM Trigger: CATCCATCCTGGGGACCACTCGGAGGTCCTAGAGCAACTTGGATTGCGGGCTGCAAGCATCGGTCCCCCTAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | CCGGGAGTTGTCAAGCCCCACGGCAGCACTGGATCATaGTTCAGGGCTCCCGCCCGGATGACAGAAGTGAAT | + |
|
Preference number: 6 (lower is better) Translates to: PGVVKPHGSTGS*FRAPARMTEVN Trigger: ATTCACTTCTGTCATCCGGGCGGGAGCCCTGAAGCATGATCCAGTGCTGCCGTGGGGCTTGACAACTCCCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS TCA 72 bp | CGGTGGATCCGAGAGCTCCTCTTCTCCACTGTCCTCTaGGCCTCTAGCTTCCTTCGGGCTGGCCTCCACTTT | + |
|
Preference number: 6 (lower is better) Translates to: RWIRELLFSTVL*ASSFLRAGLHF Trigger: AAAGTGGAGGCCAGCCCGAAGGAAGCTAGAGGCTCAGAGGACAGTGGAGAAGAGGAGCTCTCGGATCCACCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 72 bp | CTGCGTCCCACAAGCTCTGAGGGCCCCATGTCCATATaGTCGCTAACTCTGCTCTCACAAGCAAGGATGGTG | + |
|
Preference number: 6 (lower is better) Translates to: LRPTSSEGPMSI*SLTLLSQARMV Trigger: CACCATCCTTGCTTGTGAGAGCAGAGTTAGCGACCATATGGACATGGGGCCCTCAGAGCTTGTGGGACGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS GCA 72 bp | CCATCCAAGGACTGTAGGATGTGTCCACCTAGGTGTTaGTCGAAGACTTCAGAGACCAGAGCCACAGGGCCT | + |
|
Preference number: 6 (lower is better) Translates to: PSKDCRMCPPRC*SKTSETRATGP Trigger: AGGCCCTGTGGCTCTGGTCTCTGAAGTCTTCGAGCAACACCTAGGTGGACACATCCTACAGTCCTTGGATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CAA 72 bp | TGTCCAGCAGGTCCAGATGGCTTTGGCGGATCCTGGTaGCATCCTGTCCATGAACAAACTGGTAGCAGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: CPAGPDGFGGSW*HPVHEQTGSSC Trigger: GCAGCTGCTACCAGTTTGTTCATGGACAGGATGCAACCAGGATCCGCCAAAGCCATCTGGACCTGCTGGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CAA 90 bp | CTCCTGAGACACAATAGCTGGAAGCTGGAAGGCATCCAGGGGTGTTaGACTACCTTCAGCATTGCTGAGCACGTGACTGACCCACAGCAC | + |
|
Preference number: 6 (lower is better) Translates to: LLRHNSWKLEGIQGC*TTFSIAEHVTDPQH Trigger: GTGCTGTGGGTCAGTCACGTGCTCAGCAATGCTGAAGGTAGTCAAACACCCCTGGATGCCTTCCAGCTTCCAGCTATTGTGTCTCAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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| CDS CCA 72 bp | CTTTGTCCAGCAGGTCCAGATGGCTTTGGCGGATCCTaGTTGCATCCTGTCCATGAACAAACTGGTAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: LCPAGPDGFGGS*LHPVHEQTGSS Trigger: GCTGCTACCAGTTTGTTCATGGACAGGATGCAACCAGGATCCGCCAAAGCCATCTGGACCTGCTGGACAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002053.9 ENSMUST00000210748.2 |
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