RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NOXO1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019320

Ensembl transcript IDs: ENSMUST00000019464.8

Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp AATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTaGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAATCC +
Preference number: 2 (lower is better)
Translates to: NPAFLVRSRSLLCLR*ALTVQPLCRAAIQS
Trigger: GGATTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
3UTR GCA 72 bp AATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTaGCTGAGGTTGGCTTTGACAGTACAACCTCTCTGC +
Preference number: 3 (lower is better)
Translates to: NPAFLVRSRSLL*LRLALTVQPLC
Trigger: GCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR GCA 90 bp CCAGTTTTATTTAGAGGAAATAGAAAGTTAGCTGGCCCGTGGCCCTGCCAGCCACTGGGAACCCTGGCCTaGCCAGGAGCGAGCCCAGCC +
Preference number: 4 (lower is better)
Translates to: PVLFRGNRKLAGPWPCQPLGTLA*PGASPA
Trigger: GGCTGGGCTCGCTCCTGGGCAGGCCAGGGTTCCCAG...TGGCTGGCAGGGCCACGGGCCAGCTAACTTTCTATTTCCTCTAAATAAAACTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp AGCCCCACTCTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGACTGTCTGGGAACCCTaGCCTGCCCAGGAGCGAGCC +
Preference number: 4 (lower is better)
Translates to: SPTLNPAFLVRSRSLLCLTVWEP*PAQERA
Trigger: GGCTCGCTCCTGGGCAGGCCAGGGTTCCCAGACAGT...CAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAGAGTGGGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp CCAGTTTTATTTAGAGGAAATAGAAAGTTAGCTGGCCCGTGGCCCTGCCAGCCATGCCCCAGCACTGTCTaGGAACCCTGGCCTGCCCAG +
Preference number: 4 (lower is better)
Translates to: PVLFRGNRKLAGPWPCQPCPSTV*EPWPAQ
Trigger: CTGGGCAGGCCAGGGTTCCCAGACAGTGCTGGGGCA...TGGCTGGCAGGGCCACGGGCCAGCTAACTTTCTATTTCCTCTAAATAAAACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR TCA 90 bp CCTGCTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATTTGCAAAGCCAGGCCTaGCTCCTGGCCTTGGCACGT +
Preference number: 4 (lower is better)
Translates to: PALPEVGFDSTTSLQSSNLQSQA*LLALAR
Trigger: ACGTGCCAAGGCCAGGAGTCAGGCCTGGCTTTGCAA...ATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR TCA 90 bp CTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTCCACCAGCCTCGGTCTaGGGTCTCCAGCACATGGAC +
Preference number: 4 (lower is better)
Translates to: LNPAFLVRSRSLLCLRLAPPASV*GLQHMD
Trigger: GTCCATGTGCTGGAGACCTCAGACCGAGGCTGGTGG...AGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR GCA 90 bp CTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAAGCAGGATCACCAGGCTaGCAGGAGGCAGCATGGGCT +
Preference number: 4 (lower is better)
Translates to: LCLRLALTVQPLCRAAIQAGSPG*QEAAWA
Trigger: AGCCCATGCTGCCTCCTGGCAGCCTGGTGATCCTGC...TTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR GCA 90 bp GTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTCCGGCCATTATACCTaGACAGCCACCAGCCTCGGT +
Preference number: 4 (lower is better)
Translates to: VRSRSLLCLRLALTVQPLSGHYT*TATSLG
Trigger: ACCGAGGCTGGTGGCTGTGCAGGTATAATGGCCGGA...GAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp CTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAAGCCAGGCCTGACTCCTaGCCTTGGCACGTTGCTACC +
Preference number: 4 (lower is better)
Translates to: LCLRLALTVQPLCRAAIQARPDS*PWHVAT
Trigger: GGTAGCAACGTGCCAAGGCCAGGAGTCAGGCCTGGC...TTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp CTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTTGCCAGGAGGCAGCATaGGCTCCAGATCCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: LNPAFLVRSRSLLCLRLACQEAA*APDPEV
Trigger: AACCTCTGGATCTGGAGCCCATGCTGCCTCCTGGCA...AGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp CTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTAGGCTGCCTCTGGGTTaGGATAAGGGCTCCTCTGGT +
Preference number: 4 (lower is better)
Translates to: LNPAFLVRSRSLLCLRLARLPLG*DKGSSG
Trigger: ACCAGAGGAGCCCTTATCCCAACCCAGAGGCAGCCT...AGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR TCA 90 bp CTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTAACCAGGCTACCTGCTaGTCCTTGTTCTCCACCAGC +
Preference number: 4 (lower is better)
Translates to: LNPAFLVRSRSLLCLRLANQATC*SLFSTS
Trigger: GCTGGTGGAGAACAAGGATCAGCAGGTAGCCTGGTT...AGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR GCA 90 bp TTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAATCCTCAGCCACCTTGTCTaGCCCAGCACTGTCTGGGAA +
Preference number: 4 (lower is better)
Translates to: LPEVGFDSTTSLQSSNTILSHLV*PSTVWE
Trigger: TTCCCAGACAGTGCTGGGGCAGACAAGGTGGCTGAG...GATTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp CTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTTGTCAAGGCTGCCTCTaGGTTGGGATAAGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: LNPAFLVRSRSLLCLRLACQGCL*VGIRAP
Trigger: AGGAGCCCTTATCCCAACCCAGAGGCAGCCTTGACA...AGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp CTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAACTCCAGGTAGGGAGCTaGAAACCAGGCTACCTGCTG +
Preference number: 4 (lower is better)
Translates to: LCLRLALTVQPLCRAAIQLQVGS*KPGYLL
Trigger: CAGCAGGTAGCCTGGTTTCCAGCTCCCTACCTGGAG...TTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR TCA 90 bp TTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAATCTGTGTCACTGTTGTCTaGCCAGCACACGGAGAAGGC +
Preference number: 4 (lower is better)
Translates to: LPEVGFDSTTSLQSSNTICVTVV*PAHGEG
Trigger: GCCTTCTCCGTGTGCTGGTCAGACAACAGTGACACA...GATTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR GCA 90 bp TTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAATCAGGGTCTTCTGGAGCTaGCTGAACTCATCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: LPEVGFDSTTSLQSSNTIRVFWS*LNSSQL
Trigger: GAGCTGGGATGAGTTCAGGCAGCTCCAGAAGACCCT...GATTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp CTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTCAGGCCTGCCTCCACTaGGAAGGTTTTCTTAAGGGT +
Preference number: 4 (lower is better)
Translates to: LNPAFLVRSRSLLCLRLAQACLH*EGFLKG
Trigger: ACCCTTAAGAAAACCTTCCCAGTGGAGGCAGGCCTG...AGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
3UTR CAA 72 bp TTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGAGGTaGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCA +
Preference number: 4 (lower is better)
Translates to: FLVRSRSLLCLR*ALTVQPLCRAA
Trigger: TGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCACCAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
3UTR CAA 72 bp GTGAGGTCTAGATCCCTGCTTTGCCTGAGGTTGGCTTaGACAGTACAACCTCTCTGCAGAGCAGCAATACAA +
Preference number: 4 (lower is better)
Translates to: VRSRSLLCLRLA*TVQPLCRAAIQ
Trigger: TTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGGGATCTAGACCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR TCA 90 bp CCTGCTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATATGTCCAGAATTTCTTaGGCCTTGGTGTGGAAAGGT +
Preference number: 4 (lower is better)
Translates to: PALPEVGFDSTTSLQSSNMSRIS*ALVWKG
Trigger: ACCTTTCCACACCAAGGCTCAAGAAATTCTGGACAT...ATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR GCA 90 bp CTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAATATGAATGTCAAGGCTaGCTCTGGGTTGGGATAAGG +
Preference number: 4 (lower is better)
Translates to: LCLRLALTVQPLCRAAIQYECQG*LWVGIR
Trigger: CCTTATCCCAACCCAGAGGCAGCCTTGACATTCATA...TTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CCA 90 bp TTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAATCGAGCATCAGGAAGCTTaGGAAGAACTTGTTCAGATC +
Preference number: 4 (lower is better)
Translates to: LPEVGFDSTTSLQSSNTIEHQEA*EELVQI
Trigger: GATCTGAACAAGTTCTTCCCAAGCTTCCTGATGCTC...GATTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 90 bp CCTCAGCCACCTTGTCTGCCCCAGCACTGTCTGGGAACCCTGGCCTaGCCAGGAGCGAGCCCAGCCCTTCAGGTTGCAGCGACATTGCAG +
Preference number: 5 (lower is better)
Translates to: PQPPCLPQHCLGTLA*PGASPALQVAATLQ
Trigger: CTGCAATGTCGCTGCAACCTGAAGGGCTGGGCTCGCTCCTGGGCAGGCCAGGGTTCCCAGACAGTGCTGGGGCAGACAAGGTGGCTGAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 90 bp AGTTGGTACTACAGGGGGAATGGTCCTGTCCTCAGCCACCTTGTCTaGCCCAGCACTGTCTGGGAACCCTGGCCTGCCCAGGAGCGAGCC +
Preference number: 5 (lower is better)
Translates to: SWYYRGNGPVLSHLV*PSTVWEPWPAQERA
Trigger: GGCTCGCTCCTGGGCAGGCCAGGGTTCCCAGACAGTGCTGGGGCAGACAAGGTGGCTGAGGACAGGACCATTCCCCCTGTAGTACCAACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 90 bp GTTGCAGCGACATTGCAGGGAGTAGGCCTGTCCGGCCATTATACCTaGACAGCCACCAGCCTCGGTCTGAGGTCTCCAGCACATGGACAC +
Preference number: 5 (lower is better)
Translates to: VAATLQGVGLSGHYT*TATSLGLRSPAHGH
Trigger: GTGTCCATGTGCTGGAGACCTCAGACCGAGGCTGGTGGCTGTGCAGGTATAATGGCCGGACAGGCCTACTCCCTGCAATGTCGCTGCAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 90 bp TTATACCTGCACAGCCACCAGCCTCGGTCTGAGGTCTCCAGCACATaGACACGTGCCCCTGAGGGCACGGATAGCTCATCAGAGCGACTG +
Preference number: 5 (lower is better)
Translates to: LYLHSHQPRSEVSST*TRAPEGTDSSSERL
Trigger: CAGTCGCTCTGATGAGCTATCCGTGCCCTCAGGGGCACGTGTCCATGTGCTGGAGACCTCAGACCGAGGCTGGTGGCTGTGCAGGTATAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 90 bp TCTGGATGGCACTCATACAGGGACGAGTTGGTACTACAGGGGGAATaGTCCTGTCCTCAGCCACCTTGTCTGCCCCAGCACTGTCTGGGA +
Preference number: 5 (lower is better)
Translates to: SGWHSYRDELVLQGE*SCPQPPCLPQHCLG
Trigger: TCCCAGACAGTGCTGGGGCAGACAAGGTGGCTGAGGACAGGACCATTCCCCCTGTAGTACCAACTCGTCCCTGTATGAGTGCCATCCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 90 bp GACCAGTATGCCCCCGACGTGTCAGCAATGGAGCATCAGGAAGCTTaGGAAGAACTTGTTCAGATCTCCGTAGCAGGCCTGCCTCCACTG +
Preference number: 5 (lower is better)
Translates to: DQYAPDVSAMEHQEA*EELVQISVAGLPPL
Trigger: CAGTGGAGGCAGGCCTGCTACGGAGATCTGAACAAGTTCTTCCCAAGCTTCCTGATGCTCCATTGCTGACACGTCGGGGGCATACTGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CAA 90 bp CCTGCTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATCCTGGCCTTGGCACGTaGCTACCTCCTCCAGGTAGG +
Preference number: 5 (lower is better)
Translates to: PALPEVGFDSTTSLQSSNPGLGT*LPPPGR
Trigger: CCTACCTGGAGGAGGTAGCAACGTGCCAAGGCCAGG...ATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 90 bp CGTAGCAGGCCTGCCTCCACTGGGAAGGTTTTCTTAAGGGTCTTCTaGAGCTGCCTGAACTCATCCCAGCTCCTCCGCACAAATGTGTCA +
Preference number: 5 (lower is better)
Translates to: RSRPASTGKVFLRVF*SCLNSSQLLRTNVS
Trigger: TGACACATTTGTGCGGAGGAGCTGGGATGAGTTCAGGCAGCTCCAGAAGACCCTTAAGAAAACCTTCCCAGTGGAGGCAGGCCTGCTACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 90 bp TCTGACCAGCACACGGAGAAGGCAAATGTCTGGAGTCGGTCCATTTaGACCAAGGCTACAGCATGGGCTGATACTGGGTGTCTTGGGCTT +
Preference number: 5 (lower is better)
Translates to: SDQHTEKANVWSRSI*TKATAWADTGCLGL
Trigger: AAGCCCAAGACACCCAGTATCAGCCCATGCTGTAGCCTTGGTGCAAATGGACCGACTCCAGACATTTGCCTTCTCCGTGTGCTGGTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 90 bp AGGCCTGCCTCCACTGGGAAGGTTTTCTTAAGGGTCTTCTGGAGCTaGCTGAACTCATCCCAGCTCCTCCGCACAAATGTGTCACTGTTG +
Preference number: 5 (lower is better)
Translates to: RPASTGKVFLRVFWS*LNSSQLLRTNVSLL
Trigger: CAACAGTGACACATTTGTGCGGAGGAGCTGGGATGAGTTCAGGCAGCTCCAGAAGACCCTTAAGAAAACCTTCCCAGTGGAGGCAGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CAA 90 bp CCAGTTTTATTTAGAGGAAATAGAAAGTTAGCTGGCCCGTGGCCCTGCCAGCCACTGTCCTCAGCCACCTaGTCTGCCCCAGCACTGTCT +
Preference number: 5 (lower is better)
Translates to: PVLFRGNRKLAGPWPCQPLSSAT*SAPALS
Trigger: AGACAGTGCTGGGGCAGACAAGGTGGCTGAGGACAG...TGGCTGGCAGGGCCACGGGCCAGCTAACTTTCTATTTCCTCTAAATAAAACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS TCA 90 bp CCTGAACTCATCCCAGCTCCTCCGCACAAATGTGTCACTGTTGTCTaGCCAGCACACGGAGAAGGCAAATGTCTGGAGTCGGTCCATTTG +
Preference number: 5 (lower is better)
Translates to: PELIPAPPHKCVTVV*PAHGEGKCLESVHL
Trigger: CAAATGGACCGACTCCAGACATTTGCCTTCTCCGTGTGCTGGTCAGACAACAGTGACACATTTGTGCGGAGGAGCTGGGATGAGTTCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 90 bp TCACCAGGCTGCCAGGAGGCAGCATGGGCTCCAGATCCAGAGGTTTaGGTACAAAGAAGCCGTGAAGTGCTGAACTCCTCAATATGTGTT +
Preference number: 5 (lower is better)
Translates to: SPGCQEAAWAPDPEV*VQRSREVLNSSICV
Trigger: AACACATATTGAGGAGTTCAGCACTTCACGGCTTCTTTGTACCCAAACCTCTGGATCTGGAGCCCATGCTGCCTCCTGGCAGCCTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 90 bp AATGTGTCACTGTTGTCTGACCAGCACACGGAGAAGGCAAATGTCTaGAGTCGGTCCATTTGCACCAAGGCTACAGCATGGGCTGATACT +
Preference number: 5 (lower is better)
Translates to: NVSLLSDQHTEKANV*SRSICTKATAWADT
Trigger: AGTATCAGCCCATGCTGTAGCCTTGGTGCAAATGGACCGACTCCAGACATTTGCCTTCTCCGTGTGCTGGTCAGACAACAGTGACACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CAA 90 bp AGCCCCACTCTTAATCCTGCTTTCTTGGTGAGGTCTAGATCCCTGCTTTGCCTGTATGTCCAGAATTTCTaGAGCCTTGGTGTGGAAAGG +
Preference number: 5 (lower is better)
Translates to: SPTLNPAFLVRSRSLLCLYVQNF*SLGVER
Trigger: CCTTTCCACACCAAGGCTCAAGAAATTCTGGACATA...CAGGCAAAGCAGGGATCTAGACCTCACCAAGAAAGCAGGATTAAGAGTGGGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS-3UTR CAA 90 bp CTTTGCCTGAGGTTGGCTTTGACAGTACAACCTCTCTGCAGAGCAGCAATACAAGGAGCATCAGGAAGCTaGGGAAGAACTTGTTCAGAT +
Preference number: 5 (lower is better)
Translates to: LCLRLALTVQPLCRAAIQGASGS*GRTCSD
Trigger: ATCTGAACAAGTTCTTCCCAAGCTTCCTGATGCTCC...TTGTATTGCTGCTCTGCAGAGAGGTTGTACTGTCAAAGCCAACCTCAGGCAAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 72 bp CCTGGCCTGCCCAGGAGCGAGCCCAGCCCTTCAGGTTaGAGCGACATTGCAGGGAGTAGGCCTGTCCGGCCA +
Preference number: 6 (lower is better)
Translates to: PGLPRSEPSPSG*SDIAGSRPVRP
Trigger: TGGCCGGACAGGCCTACTCCCTGCAATGTCGCTGCAACCTGAAGGGCTGGGCTCGCTCCTGGGCAGGCCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 72 bp CCTTGTCTGCCCCAGCACTGTCTGGGAACCCTGGCCTaGCCAGGAGCGAGCCCAGCCCTTCAGGTTGCAGCG +
Preference number: 6 (lower is better)
Translates to: PCLPQHCLGTLA*PGASPALQVAA
Trigger: CGCTGCAACCTGAAGGGCTGGGCTCGCTCCTGGGCAGGCCAGGGTTCCCAGACAGTGCTGGGGCAGACAAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 90 bp CTGGCCTGCCCAGGAGCGAGCCCAGCCCTTCAGGTTGCAGCGACATaGCAGGGAGTAGGCCTGTCCGGCCATTATACCTGCACAGCCACC +
Preference number: 6 (lower is better)
Translates to: LACPGASPALQVAAT*QGVGLSGHYTCTAT
Trigger: GGTGGCTGTGCAGGTATAATGGCCGGACAGGCCTACTCCCTGCAATGTCGCTGCAACCTGAAGGGCTGGGCTCGCTCCTGGGCAGGCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 90 bp GGACGAGTTGGTACTACAGGGGGAATGGTCCTGTCCTCAGCCACCTaGTCTGCCCCAGCACTGTCTGGGAACCCTGGCCTGCCCAGGAGC +
Preference number: 6 (lower is better)
Translates to: GRVGTTGGMVLSSAT*SAPALSGNPGLPRS
Trigger: GCTCCTGGGCAGGCCAGGGTTCCCAGACAGTGCTGGGGCAGACAAGGTGGCTGAGGACAGGACCATTCCCCCTGTAGTACCAACTCGTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 72 bp CACAGCCACCAGCCTCGGTCTGAGGTCTCCAGCACATaGACACGTGCCCCTGAGGGCACGGATAGCTCATCA +
Preference number: 6 (lower is better)
Translates to: HSHQPRSEVSST*TRAPEGTDSSS
Trigger: TGATGAGCTATCCGTGCCCTCAGGGGCACGTGTCCATGTGCTGGAGACCTCAGACCGAGGCTGGTGGCTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 72 bp CCAGGAGCGAGCCCAGCCCTTCAGGTTGCAGCGACATaGCAGGGAGTAGGCCTGTCCGGCCATTATACCTGC +
Preference number: 6 (lower is better)
Translates to: PGASPALQVAAT*QGVGLSGHYTC
Trigger: GCAGGTATAATGGCCGGACAGGCCTACTCCCTGCAATGTCGCTGCAACCTGAAGGGCTGGGCTCGCTCCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS TCA 72 bp GCAGAACTGCCTCCCACTTCCTTGCAAAGCCAGGCCTaGCTCCTGGCCTTGGCACGTTGCTACCTCCTCCAG +
Preference number: 6 (lower is better)
Translates to: AELPPTSLQSQA*LLALARCYLLQ
Trigger: CTGGAGGAGGTAGCAACGTGCCAAGGCCAGGAGTCAGGCCTGGCTTTGCAAGGAAGTGGGAGGCAGTTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 90 bp TCCCACTTCCTTGCAAAGCCAGGCCTGACTCCTGGCCTTGGCACGTaGCTACCTCCTCCAGGTAGGGAGCTGGAAACCAGGCTACCTGCT +
Preference number: 6 (lower is better)
Translates to: SHFLAKPGLTPGLGT*LPPPGRELETRLPA
Trigger: AGCAGGTAGCCTGGTTTCCAGCTCCCTACCTGGAGGAGGTAGCAACGTGCCAAGGCCAGGAGTCAGGCCTGGCTTTGCAAGGAAGTGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 72 bp ACATTGCAGGGAGTAGGCCTGTCCGGCCATTATACCTaGACAGCCACCAGCCTCGGTCTGAGGTCTCCAGCA +
Preference number: 6 (lower is better)
Translates to: TLQGVGLSGHYT*TATSLGLRSPA
Trigger: TGCTGGAGACCTCAGACCGAGGCTGGTGGCTGTGCAGGTATAATGGCCGGACAGGCCTACTCCCTGCAATGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 72 bp GCCTTGGCACGTTGCTACCTCCTCCAGGTAGGGAGCTaGAAACCAGGCTACCTGCTGATCCTTGTTCTCCAC +
Preference number: 6 (lower is better)
Translates to: ALARCYLLQVGS*KPGYLLILVLH
Trigger: GTGGAGAACAAGGATCAGCAGGTAGCCTGGTTTCCAGCTCCCTACCTGGAGGAGGTAGCAACGTGCCAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 72 bp CACTCATACAGGGACGAGTTGGTACTACAGGGGGAATaGTCCTGTCCTCAGCCACCTTGTCTGCCCCAGCAC +
Preference number: 6 (lower is better)
Translates to: HSYRDELVLQGE*SCPQPPCLPQH
Trigger: GTGCTGGGGCAGACAAGGTGGCTGAGGACAGGACCATTCCCCCTGTAGTACCAACTCGTCCCTGTATGAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 90 bp CGACCAGTATGCCCCCGACGTGTCAGCAATGGAGCATCAGGAAGCTaGGGAAGAACTTGTTCAGATCTCCGTAGCAGGCCTGCCTCCACT +
Preference number: 6 (lower is better)
Translates to: RPVCPRRVSNGASGS*GRTCSDLRSRPAST
Trigger: AGTGGAGGCAGGCCTGCTACGGAGATCTGAACAAGTTCTTCCCAAGCTTCCTGATGCTCCATTGCTGACACGTCGGGGGCATACTGGTCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 72 bp CCTGCCTCCACTGGGAAGGTTTTCTTAAGGGTCTTCTaGAGCTGCCTGAACTCATCCCAGCTCCTCCGCACA +
Preference number: 6 (lower is better)
Translates to: PASTGKVFLRVF*SCLNSSQLLRT
Trigger: TGTGCGGAGGAGCTGGGATGAGTTCAGGCAGCTCCAGAAGACCCTTAAGAAAACCTTCCCAGTGGAGGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 90 bp AGCTGCCTGAACTCATCCCAGCTCCTCCGCACAAATGTGTCACTGTaGTCTGACCAGCACACGGAGAAGGCAAATGTCTGGAGTCGGTCC +
Preference number: 6 (lower is better)
Translates to: SCLNSSQLLRTNVSL*SDQHTEKANVWSRS
Trigger: GGACCGACTCCAGACATTTGCCTTCTCCGTGTGCTGGTCAGACAACAGTGACACATTTGTGCGGAGGAGCTGGGATGAGTTCAGGCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 72 bp TGCCCCCGACGTGTCAGCAATGGAGCATCAGGAAGCTaGGGAAGAACTTGTTCAGATCTCCGTAGCAGGCCT +
Preference number: 6 (lower is better)
Translates to: CPRRVSNGASGS*GRTCSDLRSRP
Trigger: AGGCCTGCTACGGAGATCTGAACAAGTTCTTCCCAAGCTTCCTGATGCTCCATTGCTGACACGTCGGGGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS TCA 72 bp ATCCCAGCTCCTCCGCACAAATGTGTCACTGTTGTCTaGCCAGCACACGGAGAAGGCAAATGTCTGGAGTCG +
Preference number: 6 (lower is better)
Translates to: IPAPPHKCVTVV*PAHGEGKCLES
Trigger: CGACTCCAGACATTTGCCTTCTCCGTGTGCTGGTCAGACAACAGTGACACATTTGTGCGGAGGAGCTGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 72 bp CTGTTGTCTGACCAGCACACGGAGAAGGCAAATGTCTaGAGTCGGTCCATTTGCACCAAGGCTACAGCATGG +
Preference number: 6 (lower is better)
Translates to: LLSDQHTEKANV*SRSICTKATAW
Trigger: CCATGCTGTAGCCTTGGTGCAAATGGACCGACTCCAGACATTTGCCTTCTCCGTGTGCTGGTCAGACAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 72 bp CAGTCCTCGACCAGTATGCCCCCGACGTGTCAGCAATaGAGCATCAGGAAGCTTGGGAAGAACTTGTTCAGA +
Preference number: 6 (lower is better)
Translates to: QSSTSMPPTCQQ*SIRKLGKNLFR
Trigger: TCTGAACAAGTTCTTCCCAAGCTTCCTGATGCTCCATTGCTGACACGTCGGGGGCATACTGGTCGAGGACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS GCA 72 bp TCCACTGGGAAGGTTTTCTTAAGGGTCTTCTGGAGCTaGCTGAACTCATCCCAGCTCCTCCGCACAAATGTG +
Preference number: 6 (lower is better)
Translates to: STGKVFLRVFWS*LNSSQLLRTNV
Trigger: CACATTTGTGCGGAGGAGCTGGGATGAGTTCAGGCAGCTCCAGAAGACCCTTAAGAAAACCTTCCCAGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 72 bp AACTCATCCCAGCTCCTCCGCACAAATGTGTCACTGTaGTCTGACCAGCACACGGAGAAGGCAAATGTCTGG +
Preference number: 6 (lower is better)
Translates to: NSSQLLRTNVSL*SDQHTEKANVW
Trigger: CCAGACATTTGCCTTCTCCGTGTGCTGGTCAGACAACAGTGACACATTTGTGCGGAGGAGCTGGGATGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 72 bp CGTGAAGTGCTGAACTCCTCAATATGTGTTCTGAGGTaGCCAGCAATGCCTGTACATAGGTGTCCAGCAGCC +
Preference number: 6 (lower is better)
Translates to: REVLNSSICVLR*PAMPVHRCPAA
Trigger: GGCTGCTGGACACCTATGTACAGGCATTGCTGGCAACCTCAGAACACATATTGAGGAGTTCAGCACTTCACG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CAA 90 bp CAAAGAAGCCGTGAAGTGCTGAACTCCTCAATATGTGTTCTGAGGTaGCCAGCAATGCCTGTACATAGGTGTCCAGCAGCCGCAAACGTA +
Preference number: 6 (lower is better)
Translates to: QRSREVLNSSICVLR*PAMPVHRCPAAANV
Trigger: TACGTTTGCGGCTGCTGGACACCTATGTACAGGCATTGCTGGCAACCTCAGAACACATATTGAGGAGTTCAGCACTTCACGGCTTCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8
CDS CCA 72 bp GATGTCGTAGTAATATGTCCAGAATTTCTTGAGCCTTaGTGTGGAAAGGTCTGTCTCTTATGTCAAGAGTGT +
Preference number: 6 (lower is better)
Translates to: DVVVICPEFLEP*CGKVCLLCQEC
Trigger: ACACTCTTGACATAAGAGACAGACCTTTCCACACCAAGGCTCAAGAAATTCTGGACATATTACTACGACATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019464.8