RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NOVA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030411

Ensembl transcript IDs: ENSMUST00000032571.10, ENSMUST00000220302.2

Found 428 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCGATGGAGCGAGTCTGACGGTCGAGTGGGGCGGGCTGGAGCAATaGGGCCGCAGGTTCCCGTGGTGGCCGGTGGTGATGGAGTCACTT +
Preference number: 1 (lower is better)
Translates to: FDGASLTVEWGGLEQ*GRRFPWWPVVMESL
Trigger: AAGTGACTCCATCACCACCGGCCACCACGGGAACCTGCGGCCTCATTGCTCCAGCCCGCCCCACTCGACCGTCAGACTCGCTCCATCGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp CAGGTTTTGACGACGCCGGCCTCAATTCCGGATGGCGCTTGGGGCTaGTGCCCTGGGCAGAAGGCCTGTCTGGCTGTCCGACAGGTGTAC +
Preference number: 1 (lower is better)
Translates to: QVLTTPASIPDGAWG*CPGQKACLAVRQVY
Trigger: GTACACCTGTCGGACAGCCAGACAGGCCTTCTGCCCAGGGCATCAGCCCCAAGCGCCATCCGGAATTGAGGCCGGCGTCGTCAAAACCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp CTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTaGAGTCGAGGAGCTGCTCCCAGTGGACACGGGTGTCCAGGAGCT +
Preference number: 1 (lower is better)
Translates to: LASLQAPGPGLFWCY*SRGAAPSGHGCPGA
Trigger: AGCTCCTGGACACCCGTGTCCACTGGGAGCAGCTCCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp GCGGGCTGGAGCAATGAGGCCGCAGGTTCCCGTGGTGGCCGGTGGTaGTGGAGTCACTTAGAAGATGAGAGGTTGGTGGTTTTGTGGGGG +
Preference number: 1 (lower is better)
Translates to: AGWSNEAAGSRGGRW*WSHLEDERLVVLWG
Trigger: CCCCCACAAAACCACCAACCTCTCATCTTCTAAGTGACTCCATCACCACCGGCCACCACGGGAACCTGCGGCCTCATTGCTCCAGCCCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp GCAGGGTCTGGAAGACCTAGGAATGGATGGAGGAGGGAGTGGGCATaGGGTGTCCCTCCCCCAGAGATGCTGATGATGGAGACAGGGCTC +
Preference number: 1 (lower is better)
Translates to: AGSGRPRNGWRREWA*GVPPPEMLMMETGL
Trigger: GAGCCCTGTCTCCATCATCAGCATCTCTGGGGGAGGGACACCCCATGCCCACTCCCTCCTCCATCCATTCCTAGGTCTTCCAGACCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 90 bp CCTCAGTCGTCACTCAATCCTGCCTATGACTACCAGAAGGGAGGGTaGAGCCAGGCCTACCCCAGCCCCATTCCAAGCCAAGCAGGAGTC +
Preference number: 1 (lower is better)
Translates to: PQSSLNPAYDYQKGG*SQAYPSPIPSQAGV
Trigger: GACTCCTGCTTGGCTTGGAATGGGGCTGGGGTAGGCCTGGCTGCACCCTCCCTTCTGGTAGTCATAGGCAGGATTGAGTGACGACTGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 90 bp GCCAGCTGCTCCTGGGCCTCGCACAATAGTGTGGCTCACAGGACCTaGAGCATCCCAGAGCTGGAGTCATTCCCAGCAGGAATAGCTCTG +
Preference number: 1 (lower is better)
Translates to: ASCSWASHNSVAHRT*SIPELESFPAGIAL
Trigger: CAGAGCTATTCCTGCTGGGAATGACTCCAGCTCTGGGATGCTGCAGGTCCTGTGAGCCACACTATTGTGCGAGGCCCAGGAGCAGCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp CCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGAGCTGCTCCCAGTaGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGT +
Preference number: 1 (lower is better)
Translates to: PRAILVLLESRSCSQ*TRVSRSCLWVLCMC
Trigger: ACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACTGGGAGCAGCTCCTCGACTCCAGTAGCACCAGAATAGCCCGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp CTGCTAATTATTGCGGCAAAATTTTCCCGCCCACGGAGAGATGGCTaGGAGAGGGCAAAGCTGATGACCGGGCAGGCTGGCTCAGAGCCC +
Preference number: 1 (lower is better)
Translates to: LLIIAAKFSRPRRDG*ERAKLMTGQAGSEP
Trigger: GGGCTCTGAGCCAGCCTGCCCGGTCATCAGCTTTGCCCTCTCCCAGCCATCTCTCCGTGGGCGGGAAAATTTTGCCGCAATAATTAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp TGCGGTGACCCCAGCCAAGAGCTTCTGGAGGTGGCAGAGAGGAAGTaGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAG +
Preference number: 1 (lower is better)
Translates to: CGDPSQELLEVAERK*AAALVKEDGRKSVK
Trigger: CTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCTCTGCCACCTCCAGAAGCTCTTGGCTGGGGTCACCGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp TGCCCTGCTAATTATTGCGGCAAAATTTTCCCGCCCACGGAGAGATaGCTGGGAGAGGGCAAAGCTGATGACCGGGCAGGCTGGCTCAGA +
Preference number: 1 (lower is better)
Translates to: CPANYCGKIFPPTER*LGEGKADDRAGWLR
Trigger: TCTGAGCCAGCCTGCCCGGTCATCAGCTTTGCCCTCTCCCAGCCATCTCTCCGTGGGCGGGAAAATTTTGCCGCAATAATTAGCAGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp CCCACCAAAGAGGAGTGTAGAGGGAGGAGGGGGAATCTTAGGGACTaGCCACTGTCCAACACCGGAAGCGCATGCTTCATCCCTATGATG +
Preference number: 1 (lower is better)
Translates to: PTKEECRGRRGNLRD*PLSNTGSACFIPMM
Trigger: CATCATAGGGATGAAGCATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTCTACACTCCTCTTTGGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp GTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTaGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGAC +
Preference number: 1 (lower is better)
Translates to: VDTGVQELSVGSVYV*LLVTMVPRTGYWMD
Trigger: GTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp CCTCACTTCAGCTCTGACTCCTGGGTGGCTACCTCTACTCCTACTTaGGTCTCTTCCCCAGGTTCTGGAACTGCAATCAGAGAGGCAGGA +
Preference number: 1 (lower is better)
Translates to: PHFSSDSWVATSTPT*VSSPGSGTAIREAG
Trigger: TCCTGCCTCTCTGATTGCAGTTCCAGAACCTGGGGAAGAGACCCAAGTAGGAGTAGAGGTAGCCACCCAGGAGTCAGAGCTGAAGTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp GTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTGGTaGCCATGGTTCCCAGGACTGGATATTGGATGGACAAGTTCAGCC +
Preference number: 1 (lower is better)
Translates to: VSRSCLWVLCMCGCW*PWFPGLDIGWTSSA
Trigger: GGCTGAACTTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp CAGAGAGGCAGGATGTTGTGTTTGGGAGAGGCACCTCATTCCAGGTaGCCTGAAGGCTCCCTCCCCTCCTCCCATATGTTAACAACAACA +
Preference number: 1 (lower is better)
Translates to: QRGRMLCLGEAPHSR*PEGSLPSSHMLTTT
Trigger: TGTTGTTGTTAACATATGGGAGGAGGGGAGGGAGCCTTCAGGTCACCTGGAATGAGGTGCCTCTCCCAAACACAACATCCTGCCTCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp GCTGAAGAGTGGGATGCAAGGAGGCCGGTCAGATCCTTTGCGATCTaGTTGGCTAACAGGCAGAAGGGGCGGGGAATGAGCTTTGTTATT +
Preference number: 1 (lower is better)
Translates to: AEEWDARRPVRSFAI*LANRQKGRGMSFVI
Trigger: AATAACAAAGCTCATTCCCCGCCCCTTCTGCCTGTTAGCCAATCAGATCGCAAAGGATCTGACCGGCCTCCTTGCATCCCACTCTTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp TTTGGCGGGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTaGACCATGCCTCCAGGAGTTGAGATGCCAACACAAATAAGAGAG +
Preference number: 1 (lower is better)
Translates to: FGGAHLGFLPNRTGM*TMPPGVEMPTQIRE
Trigger: CTCTCTTATTTGTGTTGGCATCTCAACTCCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp GGAGCATCCTGGACGCCTAGATTGCCACCTTCACCGCTGCTCTGGTaGACGCTTTTGCAAATTAACCTGTTAGGCTCGAAACAGCAAGAG +
Preference number: 1 (lower is better)
Translates to: GASWTPRLPPSPLLW*TLLQINLLGSKQQE
Trigger: CTCTTGCTGTTTCGAGCCTAACAGGTTAATTTGCAAAAGCGTTCACCAGAGCAGCGGTGAAGGTGGCAATCTAGGCGTCCAGGATGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp GAGTGTCTATGTTTGAAACCCCTCACTTCAGCTCTGACTCCTGGGTaGCTACCTCTACTCCTACTTGGGTCTCTTCCCCAGGTTCTGGAA +
Preference number: 1 (lower is better)
Translates to: ECLCLKPLTSALTPG*LPLLLLGSLPQVLE
Trigger: TTCCAGAACCTGGGGAAGAGACCCAAGTAGGAGTAGAGGTAGCCACCCAGGAGTCAGAGCTGAAGTGAGGGGTTTCAAACATAGACACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp AATACTGTTCTCTCGAGATCCTTAACATTTTGGCGGGGCACACCTTaGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGG +
Preference number: 1 (lower is better)
Translates to: NTVLSRSLTFWRGTP*VSPKSNRDVDHASR
Trigger: CCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCAAAATGTTAAGGATCTCGAGAGAACAGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp AGGCAGGATGTTGTGTTTGGGAGAGGCACCTCATTCCAGGTGACCTaGAGGCTCCCTCCCCTCCTCCCATATGTTAACAACAACAACAAA +
Preference number: 1 (lower is better)
Translates to: RQDVVFGRGTSFQVT*RLPPLLPYVNNNNK
Trigger: TTTGTTGTTGTTGTTAACATATGGGAGGAGGGGAGGGAGCCTTCAGGTCACCTGGAATGAGGTGCCTCTCCCAAACACAACATCCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp TGGCCTGACAGAGCCACCATACATTTGGCTCATCCATCAATGAAATaGAACCACGTAGACACAGGCATGCACACAAAAGGCAGGGGTGGG +
Preference number: 1 (lower is better)
Translates to: WPDRATIHLAHPSMK*NHVDTGMHTKGRGG
Trigger: CCCACCCCTGCCTTTTGTGTGCATGCCTGTGTCTACGTGGTTTCATTTCATTGATGGATGAGCCAAATGTATGGTGGCTCTGTCAGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp ACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTaGGTGGACCAGCTTACTAAGCTAGCAAACTACTTTTCAGATAGC +
Preference number: 1 (lower is better)
Translates to: TMRVGRCATPHSPTW*VDQLTKLANYFSDS
Trigger: GCTATCTGAAAAGTAGTTTGCTAGCTTAGTAAGCTGGTCCACTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp CCAGCTGTCCGAGTTAATACTGTTCTCTCGAGATCCTTAACATTTTaGCGGGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTG +
Preference number: 1 (lower is better)
Translates to: PAVRVNTVLSRSLTF*RGTPWVSPKSNRDV
Trigger: CACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCAAAATGTTAAGGATCTCGAGAGAACAGTATTAACTCGGACAGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp GTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGAGTTaGGATGCCAACACAAATAAGAGAGAGAGAGAGAGAGAGAGAGAG +
Preference number: 1 (lower is better)
Translates to: VSPKSNRDVDHASRS*DANTNKRERERERE
Trigger: CTCTCTCTCTCTCTCTCTCTCTCTCTTATTTGTGTTGGCATCTCAACTCCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 90 bp AGCTTCAGGTCCCAGGAAGAATTCAGCAGTCAATTCTCCAAAGACTaGCCCATCCCAAAGCCATTCTTTTTGAGCCAGCCTCCAACAGAG +
Preference number: 1 (lower is better)
Translates to: SFRSQEEFSSQFSKD*PIPKPFFLSQPPTE
Trigger: CTCTGTTGGAGGCTGGCTCAAAAAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCCTGGGACCTGAAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp GGAACATTTCTGACCAATCAAGATCGTCAACATACACCAGCTCCCTaGAAGCCGCCAAGCTTCAAATTCGGCAGACTGCGCAAGGCATTT +
Preference number: 1 (lower is better)
Translates to: GTFLTNQDRQHTPAP*KPPSFKFGRLRKAF
Trigger: AAATGCCTTGCGCAGTCTGCCGAATTTGAAGCTTGGCGGCTTCCAGGGAGCTGGTGTATGTTGACGATCTTGATTGGTCAGAAATGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp GCATGTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATaGAAAGCAGGCTGTCCAAGAGAGGGCACAGATGATTTACAAATA +
Preference number: 1 (lower is better)
Translates to: ACHTGNGPRLQPMGL*KAGCPREGTDDLQI
Trigger: TATTTGTAAATCATCTGTGCCCTCTCTTGGACAGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 90 bp GCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTTTTaGGCCAGCCTCCAACAGAGGAAGCAGAGGAGAGATTCAATTCTC +
Preference number: 1 (lower is better)
Translates to: AVNSPKTAPSQSHSF*ASLQQRKQRRDSIL
Trigger: GAGAATTGAATCTCTCCTCTGCTTCCTCTGTTGGAGGCTGGCTCAAAAAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp ACAGATGATTTACAAATAGAGTGTCTTTATCCCACCTACCCATCCTaGACATTGCTTCACCCCTATTCCTTCCCCTCCTCATGGAGCCTG +
Preference number: 1 (lower is better)
Translates to: TDDLQIECLYPTYPS*TLLHPYSFPSSWSL
Trigger: CAGGCTCCATGAGGAGGGGAAGGAATAGGGGTGAAGCAATGTCCAGGATGGGTAGGTGGGATAAAGACACTCTATTTGTAAATCATCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp AGAGAGAGAGAGAGAGAGAAAGAGAGAGACACTCCCCACGTCGCCTaGCTCAAACCAAGTACAAAAGTGACTATTTACAATGAAGGCGTG +
Preference number: 1 (lower is better)
Translates to: REREREKERDTPHVA*LKPSTKVTIYNEGV
Trigger: CACGCCTTCATTGTAAATAGTCACTTTTGTACTTGGTTTGAGCCAGGCGACGTGGGGAGTGTCTCTCTCTTTCTCTCTCTCTCTCTCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp GTGTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTaGATGGACAAGTTCAGCCTTGAAACACTTACTTTCTTTGGCCAT +
Preference number: 1 (lower is better)
Translates to: VYVWLLVTMVPRTGY*MDKFSLETLTFFGH
Trigger: ATGGCCAAAGAAAGTAAGTGTTTCAAGGCTGAACTTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp ACCCTAAACTTTGCAAGGCTCACTGAACTCTACACCAGATCACACTaGCCTGACAGAGCCACCATACATTTGGCTCATCCATCAATGAAA +
Preference number: 1 (lower is better)
Translates to: TLNFARLTELYTRSH*PDRATIHLAHPSMK
Trigger: TTTCATTGATGGATGAGCCAAATGTATGGTGGCTCTGTCAGGCCAGTGTGATCTGGTGTAGAGTTCAGTGAGCCTTGCAAAGTTTAGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 90 bp CAAGAGTCCATGCAAGGGAGAACCTCCTCTCCTTTTTCAAATAGCTaGAGACCAGCTAGCCATAAAGTAATAAGGATGGTGTTGGCCACA +
Preference number: 1 (lower is better)
Translates to: QESMQGRTSSPFSNS*RPASHKVIRMVLAT
Trigger: TGTGGCCAACACCATCCTTATTACTTTATGGCTAGCTGGTCTCCAGCTATTTGAAAAAGGAGAGGAGGTTCTCCCTTGCATGGACTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGGCGGGCTGGAGCAATaGGGCCGCAGGTTCCCGTGG +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRGGLEQ*GRRFPW
Trigger: CCACGGGAACCTGCGGCCTCATTGCTCCAGCCCGCC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATAGATGGCGCTTGGGGCTaGTGCCCTGGGCAGAAGGCC +
Preference number: 2 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIDGAWG*CPGQKA
Trigger: GGCCTTCTGCCCAGGGCATCAGCCCCAAGCGCCATC...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGATGGCGCTTGGGGCTaGTGCCCTGGGCAGAAGGCC +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRDGAWG*CPGQKA
Trigger: GGCCTTCTGCCCAGGGCATCAGCCCCAAGCGCCATC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGATTGGGGCATGGCATaGGGAGGCATGGGCGCTGGG +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGDWGMA*GGMGAG
Trigger: CCCAGCGCCCATGCCTCCCCATGCCATGCCCCAATC...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATAGCACCTCATTCCAGGTaGCCTGAAGGCTCCCTCCCC +
Preference number: 2 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIAPHSR*PEGSLP
Trigger: GGGGAGGGAGCCTTCAGGTCACCTGGAATGAGGTGC...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGTCGATGGAGCGAGTCTaGCGGTCGAGTGGGGCGGGC +
Preference number: 2 (lower is better)
Translates to: GTPWVSPKSNRDVDHASRSMERV*RSSGAG
Trigger: GCCCGCCCCACTCGACCGTCAGACTCGCTCCATCGA...CCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGATACCAGAAGGGAGGGTaGAGCCAGGCCTACCCCAGC +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGYQKGG*SQAYPS
Trigger: GCTGGGGTAGGCCTGGCTGCACCCTCCCTTCTGGTA...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTGGTGGAGGGGAGCAATaGCCCTGTGGGCCGGCCCCC +
Preference number: 2 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQAGGGEQ*PCGPAP
Trigger: GGGGGCCGGCCCACAGGGCCATTGCTCCCCTCCACC...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGACGCAGGTTCCCGTGGTaGCCGGTGGTGATGGAGTCA +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGRRFPW*PVVMES
Trigger: TGACTCCATCACCACCGGCCACCACGGGAACCTGCG...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGATGGCATGGGGAGGCATaGGCGCTGGGAGGAGATGGA +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGWHGEA*ALGGDG
Trigger: TCCATCTCCTCCCAGCGCCCATGCCTCCCCATGCCA...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGATCATTCCAGGTGACCTaGAGGCTCCCTCCCCTCCTC +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGSFQVT*RLPPLL
Trigger: GAGGAGGGGAGGGAGCCTTCAGGTCACCTGGAATGA...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAGCGCATTACCAGAAGGGAGGGTaGAGCCAGGCCTACCCCAGC +
Preference number: 2 (lower is better)
Translates to: EGGGGILGTGHCPTPEAHYQKGG*SQAYPS
Trigger: GCTGGGGTAGGCCTGGCTGCACCCTCCCTTCTGGTA...ATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACCGGTCGGAGGACCTGTaGACCCCAGCCAGCTGTCCG +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANRSEDL*TPASCP
Trigger: CGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCG...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGGGACCCCGGGAGAGGTaGGTCAGGCCCAGTCAAGCA +
Preference number: 2 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGEGPRER*VRPSQA
Trigger: TGCTTGACTGGGCCTGACCCACCTCTCCCGGGGTCC...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGGTGTGTCAAGGAAATaGGGCCTGCCCCTCACTGGG +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGGVSRK*GLPLTG
Trigger: CCCAGTGAGGGGCAGGCCCCATTTCCTTGACACACC...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCGGAGCAATGGCCCTGTaGGCCGGCCCCCACCTCCAA +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTGAMAL*AGPHLQ
Trigger: TTGGAGGTGGGGGCCGGCCCACAGGGCCATTGCTCC...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp CCACCCTCCAGAGACTTTCCCTCCCTCCTGCCACTAAGCGGGAGGTaGTCTATGCCTCCGATGATAGCCGTGGGGACCCGATGGAACGGA +
Preference number: 2 (lower is better)
Translates to: PPSRDFPSLLPLSGR*SMPPMIAVGTRWNG
Trigger: TCCGTTCCATCGGGTCCCCACGGCTATCATCGGAGGCATAGACAACCTCCCGCTTAGTGGCAGGAGGGAGGGAAAGTCTCTGGAGGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAGCGCATCCCTCACTTCAGCTCTaGCTCCTGGGTGGCTACCTC +
Preference number: 2 (lower is better)
Translates to: EGGGGILGTGHCPTPEAHPSLQL*LLGGYL
Trigger: GAGGTAGCCACCCAGGAGTCAGAGCTGAAGTGAGGG...ATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATACACCAAGCTGAAGTCTaGCGGGAGTTGGGGAAGAGG +
Preference number: 2 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIHQAEV*RELGKR
Trigger: CCTCTTCCCCAACTCCCGCCAGACTTCAGCTTGGTG...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTAGGAGGGAGTGGGCATaGGGTGTCCCTCCCCCAGAG +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAARREWA*GVPPPE
Trigger: CTCTGGGGGAGGGACACCCCATGCCCACTCCCTCCT...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACGATGACCGGGCAGGCTaGCTCAGAGCCCTGCCCAAG +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANDDRAG*LRALPK
Trigger: CTTGGGCAGGGCTCTGAGCCAGCCTGCCCGGTCATC...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGAAGAGCTTCTGGAGGTaGCAGAGAGGAAGTGGGCGG +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRKSFWR*QRGSGR
Trigger: CCGCCCACTTCCTCTCTGCCACCTCCAGAAGCTCTT...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGGTATTGCGGTTCTGTaGTCCCCCATGGTGACAACC +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRGIAVL*SPMVTT
Trigger: GGTTGTCACCATGGGGGAGCACAGAACCGCAATACC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTTGGGCTAGCAAAAGAGGGTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGAGGTGGAGGGGAGCAATaGCCCTGTGGGCCGGCCCCC +
Preference number: 2 (lower is better)
Translates to: VGLAKEGGVFLSIPSFNGGGGEQ*PCGPAP
Trigger: GGGGGCCGGCCCACAGGGCCATTGCTCCCCTCCACC...TCCATTGAAACTGGGGATGGAGAGAAAGACTCCACCCTCTTTTGCTAGCCCAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp AGAGTGAGCGCTCCGATGGGGAGGCCACGCCCCCTAGGCCGGCCTTaGCAAAGCCAAACTGCAAAGGTATTTCTAGAAGATCCCTGTGCC +
Preference number: 2 (lower is better)
Translates to: RVSAPMGRPRPLGRP*QSQTAKVFLEDPCA
Trigger: GGCACAGGGATCTTCTAGAAATACCTTTGCAGTTTGGCTTTGCAAAGGCCGGCCTAGGGGGCGTGGCCTCCCCATCGGAGCGCTCACTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp AGTGTAGAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAATCATTCCAGGTGACCTaGAGGCTCCCTCCCCTCCTC +
Preference number: 2 (lower is better)
Translates to: SVEGGGGILGTGHCPTPESFQVT*RLPPLL
Trigger: GAGGAGGGGAGGGAGCCTTCAGGTCACCTGGAATGA...TTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTCTACACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACCCCTCACTTCAGCTCTaGCTCCTGGGTGGCTACCTC +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANPSLQL*LLGGYL
Trigger: GAGGTAGCCACCCAGGAGTCAGAGCTGAAGTGAGGG...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTTCTAGAAGATCCCTGTaGCCCCAGGGGAGGCGGATC +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAASRRSL*PQGRRI
Trigger: GATCCGCCTCCCCTGGGGGCACAGGGATCTTCTAGA...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GAGGCAGAGGAGAATGCTGGGGGCAGGGGTATCGGAAGCAGGAGGGCAGATGAGCCAGACTCCAGCCAATaGGCTTATGGAAAGCAGGCT +
Preference number: 2 (lower is better)
Translates to: EAEENAGGRGIGSRRADEPDSSQ*AYGKQA
Trigger: AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGG...CTCATCTGCCCTCCTGCTTCCGATACCCCTGCCCCCAGCATTCTCCTCTGCCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTAACGGACACACCAGCTaGGGCATCGAGACCGCTGAC +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAANGHTS*GIETAD
Trigger: GTCAGCGGTCTCGATGCCCCAGCTGGTGTGTCCGTT...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACGGCGCTGGGAGGAGATaGAGGGAAGGTAGCAACTGC +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANGAGRR*REGSNC
Trigger: GCAGTTGCTACCTTCCCTCCATCTCCTCCCAGCGCC...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTTATAATGCGGCAGAGTaGCAGCAGGCAGGGCCAGCC +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAYNAAE*QQAGPA
Trigger: GGCTGGCCCTGCCTGCTGCCACTCTGCCGCATTATA...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTTCACACAACGGACACTaGGGGGTGGGTGAGTGGGTG +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAASHNGH*GVGEWV
Trigger: CACCCACTCACCCACCCCCCAGTGTCCGTTGTGTGA...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TGTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCATGGAGACAGGGCTCTaGGGACCCTGCTTGGGGTTG +
Preference number: 2 (lower is better)
Translates to: CHTGNGPRLQPMGLWKAGMETGL*GPCLGL
Trigger: CAACCCCAAGCAGGGTCCTCAGAGCCCTGTCTCCAT...GCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACGGGGGAATGGATCCCTaGGAACACGGGCATGTCACA +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANGGMDP*EHGHVT
Trigger: TGTGACATGCCCGTGTTCTCAGGGATCCATTCCCCC...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGCATTCCAGGGAATACTaGAGGGGGAGAGAGGAGCTG +
Preference number: 2 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQHSREY*RGREEL
Trigger: CAGCTCCTCTCTCCCCCTGCAGTATTCCCTGGAATG...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGGATGTTACAGCCAGCTaGTCCTGGGCCTCGCACAAT +
Preference number: 2 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGEDVTAS*SWASHN
Trigger: ATTGTGCGAGGCCCAGGAGCAGCTGGCTGTAACATC...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAAACAGCAAGAGTCCATaGAAGGGAGAACCTCCTCTC +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGNSKSP*KGEPPL
Trigger: GAGAGGAGGTTCTCCCTTGCATGGACTCTTGCTGTT...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTCCGGGATGTGGACCATaGCTCCAGGAGTTGAGATGC +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAPGCGP*LQELRC
Trigger: GCATCTCAACTCCTGGAGGCATGGTCCACATCCCGG...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCGGATGGAGGAGGGAGTaGGCATGGGGTGTCCCTCCC +
Preference number: 2 (lower is better)
Translates to: QTETAKSLPSDPCPANYCGWRRE*AWGVPP
Trigger: GGGAGGGACACCCCATGCCCACTCCCTCCTCCATCC...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGACAGCCAATGGGCTTATaGAAAGCAGGCTGTCCAAGA +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGQPMGL*KAGCPR
Trigger: TCTTGGACAGCCTGCTTTCCATAAGCCCATTGGCTG...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGGTTCTGTGTATGTGTaGCTGCTGGTGACCATGGTT +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRGSVYV*LLVTMV
Trigger: AACCATGGTCACCAGCAGCCACACATACACAGAACC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGAGGTTTTTCAGGCCCTaGCTCTTCAGAGCTGACCAG +
Preference number: 2 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQRFFRP*LFRADQ
Trigger: CTGGTCAGCTCTGAAGAGTCAGGGCCTGAAAAACCT...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCTCGATGGAGCGAGTCTaGCGGTCGAGTGGGGCGGGC +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFSMERV*RSSGAG
Trigger: GCCCGCCCCACTCGACCGTCAGACTCGCTCCATCGA...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGACATGCCTCCAGGAGTTaGGATGCCAACACAAATAAG +
Preference number: 2 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGHASRS*DANTNK
Trigger: CTTATTTGTGTTGGCATCTCAACTCCTGGAGGCATG...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATATCCACAGGAAGTACATaGCTCTGCCATCTACAGAAG +
Preference number: 2 (lower is better)
Translates to: SLLPVGGPVHPSQLSELISTGST*LCHLQK
Trigger: CTTCTGTAGATGGCAGAGGCATGTACTTCCTGTGGA...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGTTCAGCTCTGACTCCTaGGTGGCTACCTCTACTCCT +
Preference number: 2 (lower is better)
Translates to: GTPWVSPKSNRDVDHASRFSSDS*VATSTP
Trigger: AGGAGTAGAGGTAGCCACCCAGGAGTCAGAGCTGAA...CCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCGCAGCATCCCAGAGCTaGAGTCATTCCCAGCAGGAA +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTAASQS*SHSQQE
Trigger: TTCCTGCTGGGAATGACTCCAGCTCTGGGATGCTGC...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGAGGGCCTGCCCCTCACTaGGGAGATGAGGACATGGAA +
Preference number: 2 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRGPAPH*GDEDME
Trigger: TTCCATGTCCTCATCTCCCCAGTGAGGGGCAGGCCC...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGAGGTCATTTAAGAGGTaGAGGGGAGCAATGGCCCTG +
Preference number: 2 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGERSFKR*RGAMAL
Trigger: CAGGGCCATTGCTCCCCTCCACCTCTTAAATGACCT...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAGGCCGCAGGTTCCCGTaGTGGCCGGTGGTGATGGAG +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTGRRFP*WPVVME
Trigger: CTCCATCACCACCGGCCACCACGGGAACCTGCGGCC...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTTGGCGGGGCACACCTTaGGTTTCTCCCAAATCGAAC +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAWRGTP*VSPKSN
Trigger: GTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCA...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAAGTGGCAGAGAGGAAGTaGGCGGCGGCGCTGGTCAAA +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQVAERK*AAALVK
Trigger: TTTGACCAGCGCCGCCGCCCACTTCCTCTCTGCCAC...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGCAGATCACACTGGCCTaGCAGAGCCACCATACATTT +
Preference number: 2 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQQITLA*QSHHTF
Trigger: AAATGTATGGTGGCTCTGTCAGGCCAGTGTGATCTG...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGAGTGACTATTTACAATaGAGGCGTGGGGAGTGGGTG +
Preference number: 2 (lower is better)
Translates to: GTPWVSPKSNRDVDHASRSDYLQ*RRGEWV
Trigger: CACCCACTCCCCACGCCTTCATTGTAAATAGTCACT...CCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAAGGGAAGAGAGTGCGGTaGCCCCAGCCAAGAGCTTCT +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQGKRVR*PQPRAS
Trigger: AGAAGCTCTTGGCTGGGGTCACCGCACTCTCTTCCC...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGTTCTCATCCCTGACCTaGATTATGTATCCCTTCTGG +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRFSSLT*IMYPFW
Trigger: CCAGAAGGGATACATAATGCAGGTCAGGGATGAGAA...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AATACAGACAAAGGTAGAGACAGGACAGAGAACCGTGGGGGAGGGGCAACCACACACCAAGCTGAAGTCTaGCGGGAGTTGGGGAAGAGG +
Preference number: 2 (lower is better)
Translates to: NTDKGRDRTENRGGGATTHQAEV*RELGKR
Trigger: CCTCTTCCCCAACTCCCGCCAGACTTCAGCTTGGTG...TGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTGTCTCTACCTTTGTCTGTATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGACCTCTACTCCTACTTaGGTCTCTTCCCCAGGTTCT +
Preference number: 2 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQTSTPT*VSSPGS
Trigger: AGAACCTGGGGAAGAGACCCAAGTAGGAGTAGAGGT...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCGCTCTGACTCCTGGGTaGCTACCTCTACTCCTACTT +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTALTPG*LPLLLL
Trigger: AAGTAGGAGTAGAGGTAGCCACCCAGGAGTCAGAGC...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGAGTCAGTGCGAGGTACCTCGAAGGCTATTGCTTTCTAGGGATTTTCACATTAGGAGGGAGTGGGCATaGGGTGTCCCTCCCCCAGAG +
Preference number: 2 (lower is better)
Translates to: GSQCEVPRRLLLSRDFHIRREWA*GVPPPE
Trigger: CTCTGGGGGAGGGACACCCCATGCCCACTCCCTCCT...AATGTGAAAATCCCTAGAAAGCAATAGCCTTCGAGGTACCTCGCACTGACTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACAGGTCATTTAAGAGGTaGAGGGGAGCAATGGCCCTG +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANRSFKR*RGAMAL
Trigger: CAGGGCCATTGCTCCCCTCCACCTCTTAAATGACCT...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAAGGCGCTGGGAGGAGATaGAGGGAAGGTAGCAACTGC +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQGAGRR*REGSNC
Trigger: GCAGTTGCTACCTTCCCTCCATCTCCTCCCAGCGCC...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGAATAAGGATTGGGGCATaGCATGGGGAGGCATGGGCG +
Preference number: 2 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRIRIGA*HGEAWA
Trigger: CGCCCATGCCTCCCCATGCCATGCCCCAATCCTTAT...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGTTTGAATGGAGAAACTaGAGGCATGGCCACTTCACT +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRFEWRN*RHGHFT
Trigger: AGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAAA...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp GCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGAGGGGTTaGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCA +
Preference number: 2 (lower is better)
Translates to: AALVKEDGRKSVKRG*NGETGGMATSLPVP
Trigger: TGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAAACCCCTCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TGTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCACTCAATCCTGCCTATaGCTACCAGAAGGGAGGGTG +
Preference number: 2 (lower is better)
Translates to: CHTGNGPRLQPMGLWKAGTQSCL*LPEGRV
Trigger: CACCCTCCCTTCTGGTAGTCATAGGCAGGATTGAGT...GCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGAGGTATTGCGGTTCTGTaGTCCCCCATGGTGACAACC +
Preference number: 2 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRGIAVL*SPMVTT
Trigger: GGTTGTCACCATGGGGGAGCACAGAACCGCAATACC...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCGGACCCCGGGAGAGGTaGGTCAGGCCCAGTCAAGCA +
Preference number: 2 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPGPRER*VRPSQA
Trigger: TGCTTGACTGGGCCTGACCCACCTCTCCCGGGGTCC...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTCTCTTCCCCAGGTTCTaGAACTGCAATCAGAGAGGC +
Preference number: 2 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQALFPRF*NCNQRG
Trigger: GCCTCTCTGATTGCAGTTCCAGAACCTGGGGAAGAG...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTGCTCTGACTCCTGGGTaGCTACCTCTACTCCTACTT +
Preference number: 2 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQAALTPG*LPLLLL
Trigger: AAGTAGGAGTAGAGGTAGCCACCCAGGAGTCAGAGC...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCTCTGAGGACCCTGCTTaGGGTTGGAGGAAATTGAAG +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTSEDPA*GWRKLK
Trigger: CTTCAATTTCCTCCAACCCCAAGCAGGGTCCTCAGA...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCGGATGGAGGAGGGAGTaGGCATGGGGTGTCCCTCCC +
Preference number: 2 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPGWRRE*AWGVPP
Trigger: GGGAGGGACACCCCATGCCCACTCCCTCCTCCATCC...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACATAGGAGGTGGGAGATaGGGGTGTGTCAAGGAAATG +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANIGGGR*GCVKEM
Trigger: CATTTCCTTGACACACCCCCATCTCCCACCTCCTAT...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACCAGCCAATGGGCTTATaGAAAGCAGGCTGTCCAAGA +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANQPMGL*KAGCPR
Trigger: TCTTGGACAGCCTGCTTTCCATAAGCCCATTGGCTG...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTCCGCCCACGGAGAGATaGCTGGGAGAGGGCAAAGCT +
Preference number: 2 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLPPTER*LGEGKA
Trigger: AGCTTTGCCCTCTCCCAGCCATCTCTCCGTGGGCGG...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGAAACAGAACTGAGGTaGGAACGGAGGTCCGATATT +
Preference number: 2 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQETELR*ERRSDI
Trigger: AATATCGGACCTCCGTTCCCACCTCAGTTCTGTTTC...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAAAAGAGCTTCTGGAGGTaGCAGAGAGGAAGTGGGCGG +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQKSFWR*QRGSGR
Trigger: CCGCCCACTTCCTCTCTGCCACCTCCAGAAGCTCTT...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCCTTTGCAAGGCTCACTaGACTCTACACCAGATCACA +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTLCKAH*TLHQIT
Trigger: TGTGATCTGGTGTAGAGTTCAGTGAGCCTTGCAAAG...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGACAGTACAGAAAGACTaGGGTTGGATTTCAGAAGGG +
Preference number: 2 (lower is better)
Translates to: GTPWVSPKSNRDVDHASRTVQKD*GWISEG
Trigger: CCCTTCTGAAATCCAACCTCAGTCTTTCTGTACTGT...CCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCGGGAGGGGGAGTCAGTaGGAGGTACCTCGAAGGCTA +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFGRGSQ*EVPRRL
Trigger: TAGCCTTCGAGGTACCTCGCACTGACTCCCCCTCCC...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACTGCCCTGCTAATTATTaGGGCAAAATTTTCCCGCCC +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANCPANY*GKIFPP
Trigger: GGGCGGGAAAATTTTGCCGCAATAATTAGCAGGGCA...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCCCCCGACCTGGGTATTaGGGTTCTGTGCTCCCCCAT +
Preference number: 2 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPPRPGY*GSVLPH
Trigger: ATGGGGGAGCACAGAACCGCAATACCCAGGTCGGGG...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
53% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCGGTGTGTCAAGGAAATaGGGCCTGCCCCTCACTGGG +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFGVSRK*GLPLTG
Trigger: CCCAGTGAGGGGCAGGCCCCATTTCCTTGACACACC...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGCTACCCACATGCAGGTaGAGCTACATGAAATACTGT +
Preference number: 2 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGELPTCR*SYMKYC
Trigger: ACAGTATTTCATGTAGCTCCACCTGCATGTGGGTAG...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCCAGGACAGAGAACCGTaGGGGAGGGGCAACCACAAG +
Preference number: 2 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPQDREP*GRGNHK
Trigger: CTTGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTG...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCCATCCCCAGTTTCAATaGATTTGCCCAGAGAAAGGC +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTHPQFQ*ICPEKG
Trigger: GCCTTTCTCTGGGCAAATCCATTGAAACTGGGGATG...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCGATGACCGGGCAGGCTaGCTCAGAGCCCTGCCCAAG +
Preference number: 2 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPDDRAG*LRALPK
Trigger: CTTGGGCAGGGCTCTGAGCCAGCCTGCCCGGTCATC...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCGATTGGGGCATGGCATaGGGAGGCATGGGCGCTGGG +
Preference number: 2 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPDWGMA*GGMGAG
Trigger: CCCAGCGCCCATGCCTCCCCATGCCATGCCCCAATC...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCATGGAGACAGGGCTCTaGGGACCCTGCTTGGGGTTG +
Preference number: 2 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPMETGL*GPCLGL
Trigger: CAACCCCAAGCAGGGTCCTCAGAGCCCTGTCTCCAT...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGGCAGGTGGAGCTACATaGAATACTGTAAGGTCATTT +
Preference number: 2 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGEAGGAT*NTVRSF
Trigger: AAATGACCTTACAGTATTTCATGTAGCTCCACCTGC...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp AATACAGACAAAGGTAGAGACAGGACAGAGAACCGTGGGGGAGGGGCAACCACACACTCACCAACATGGTaGGTGGACCAGCTTACTAAG +
Preference number: 2 (lower is better)
Translates to: NTDKGRDRTENRGGGATTHSPTW*VDQLTK
Trigger: CTTAGTAAGCTGGTCCACTCACCATGTTGGTGAGTG...TGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTGTCTCTACCTTTGTCTGTATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACACCTCTTGTCATGCTTTaGGGTCCTTCCCCAGCAGCC +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTPLVML*GPSPAA
Trigger: GGCTGCTGGGGAAGGACCTCAAAGCATGACAAGAGG...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTGCCACAGGGGCGGGCTaGAGAAACAGAACTGAGGTG +
Preference number: 2 (lower is better)
Translates to: GRIQQSILQRLPHPKAILATGAG*RNRTEV
Trigger: CACCTCAGTTCTGTTTCTTCAGCCCGCCCCTGTGGC...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTTCCACAGGAAGTACATaGCTCTGCCATCTACAGAAG +
Preference number: 2 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQASTGST*LCHLQK
Trigger: CTTCTGTAGATGGCAGAGGCATGTACTTCCTGTGGA...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTGGGAGGGGGAGTCAGTaGGAGGTACCTCGAAGGCTA +
Preference number: 2 (lower is better)
Translates to: GRIQQSILQRLPHPKAILGRGSQ*EVPRRL
Trigger: TAGCCTTCGAGGTACCTCGCACTGACTCCCCCTCCC...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACCAGTTTCAATGGATTTaGCCAGAGAAAGGCAAAGGG +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANQFQWI*PEKGKG
Trigger: CCCTTTGCCTTTCTCTGGGCAAATCCATTGAAACTG...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGATTATGTATCCCTTCTaGACCAACTACAGTACAGAA +
Preference number: 2 (lower is better)
Translates to: CIAPSTWPRAILVLLESRIMYPF*TNYSTE
Trigger: TTCTGTACTGTAGTTGGTCCAGAAGGGATACATAAT...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCCCTTTGCGATCTGATTaGCTAACAGGCAGAAGGGGC +
Preference number: 2 (lower is better)
Translates to: QTETAKSLPSDPCPANYCPLRSD*LTGRRG
Trigger: GCCCCTTCTGCCTGTTAGCCAATCAGATCGCAAAGG...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCTTGGCTGGTGGAATTTaGGGGAGAGGAATCCAAAAA +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTLAGGI*GRGIQK
Trigger: TTTTTGGATTCCTCTCCCCCAAATTCCACCAGCCAA...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCAAAGGGGGTTCTCCTTaGCTGGTGGAATTTGGGGGA +
Preference number: 2 (lower is better)
Translates to: QTETAKSLPSDPCPANYCKGGSP*LVEFGG
Trigger: TCCCCCAAATTCCACCAGCCAAGGAGAACCCCCTTT...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAAGCACCTACTGGTGCTaGAGAGTGGGATGCAAGGAG +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTSTYWC*RVGCKE
Trigger: CTCCTTGCATCCCACTCTTCAGCACCAGTAGGTGCT...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCCTTTTAAAGGGGAAATaGGAGTCGAGAATTCAGGAG +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTLLKGK*ESRIQE
Trigger: CTCCTGAATTCTCGACTCTCATTTCCCCTTTAAAAG...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTCTTTTAAAGGGGAAATaGGAGTCGAGAATTCAGGAG +
Preference number: 2 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAALLKGK*ESRIQE
Trigger: CTCCTGAATTCTCGACTCTCATTTCCCCTTTAAAAG...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCCATTCCAGGGAATACTaGAGGGGGAGAGAGGAGCTG +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFHSREY*RGREEL
Trigger: CAGCTCCTCTCTCCCCCTGCAGTATTCCCTGGAATG...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCGTGGCTCACAGGACCTaGAGCATCCCAGAGCTGGAG +
Preference number: 2 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPVAHRT*SIPELE
Trigger: CTCCAGCTCTGGGATGCTGCAGGTCCTGTGAGCCAC...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCTTCGTCTCCCATTCGTaGCTGTCAAGGCAAGTTCAC +
Preference number: 2 (lower is better)
Translates to: QTETAKSLPSDPCPANYCFVSHS*LSRQVH
Trigger: GTGAACTTGCCTTGACAGGCACGAATGGGAGACGAA...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTGCTGGCTCAGAGCCCTaGCCAAGACAGGATGAAGAA +
Preference number: 2 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLAGSEP*PRQDEE
Trigger: TTCTTCATCCTGTCTTGGGCAGGGCTCTGAGCCAGC...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCGCAGCATCCCAGAGCTaGAGTCATTCCCAGCAGGAA +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFAASQS*SHSQQE
Trigger: TTCCTGCTGGGAATGACTCCAGCTCTGGGATGCTGC...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTTGGGCTAGCAAAAGAGGGTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGAACTCCCAGGGTAGCCTaGTTTGTCGTACTTCCAGAG +
Preference number: 2 (lower is better)
Translates to: VGLAKEGGVFLSIPSFNGTPRVA*FVVLPE
Trigger: CTCTGGAAGTACGACAAACCAGGCTACCCTGGGAGT...TCCATTGAAACTGGGGATGGAGAGAAAGACTCCACCCTCTTTTGCTAGCCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAAGACCTAGGAATGGATaGAGGAGGGAGTGGGCATGG +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTRPRNG*RREWAW
Trigger: CCATGCCCACTCCCTCCTCCATCCATTCCTAGGTCT...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCAGACCTAGGAATGGATaGAGGAGGGAGTGGGCATGG +
Preference number: 2 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPRPRNG*RREWAW
Trigger: CCATGCCCACTCCCTCCTCCATCCATTCCTAGGTCT...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCAAGAGGAAAACCCAGTaGGCCTTAGGGAGGCAGAGG +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFKRKTQ*ALGRQR
Trigger: CCTCTGCCTCCCTAAGGCCCACTGGGTTTTCCTCTT...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCTTTACAATGAAGGCGTaGGGAGTGGGTGGGGGCAAC +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFFTMKA*GVGGGN
Trigger: GTTGCCCCCACCCACTCCCCACGCCTTCATTGTAAA...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCCCAGCCAAGAGCTTCTaGAGGTGGCAGAGAGGAAGT +
Preference number: 2 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPPAKSF*RWQRGS
Trigger: ACTTCCTCTCTGCCACCTCCAGAAGCTCTTGGCTGG...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp AATACAGACAAAGGTAGAGACAGGACAGAGAACCGTGGGGGAGGGGCAACCACAGGACCTCACAGGAAATaGTTTTCTCTAACCAGTACC +
Preference number: 2 (lower is better)
Translates to: NTDKGRDRTENRGGGATTGPHRK*FSLTST
Trigger: GGTACTGGTTAGAGAAAATCATTTCCTGTGAGGTCC...TGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTGTCTCTACCTTTGTCTGTATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAACTTTGCAAGGCTCACTaGACTCTACACCAGATCACA +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQLCKAH*TLHQIT
Trigger: TGTGATCTGGTGTAGAGTTCAGTGAGCCTTGCAAAG...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAGGGGTTGGAGGAAATTaGAGGTGCTCTCCAACAGAG +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTGVGGN*RCSPTE
Trigger: CTCTGTTGGAGAGCACCTTCAATTTCCTCCAACCCC...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGAACCAAGTACAAAAGTaGCTATTTACAATGAAGGCG +
Preference number: 2 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQNQVQK*LFTMKA
Trigger: CGCCTTCATTGTAAATAGTCACTTTTGTACTTGGTT...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCTACCTCGAAGGCTATTaGTTTCTAGGGATTTTCACA +
Preference number: 2 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTYLEGY*FLGIFT
Trigger: TGTGAAAATCCCTAGAAAGCAATAGCCTTCGAGGTA...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTACTTTACTACCCACATaGAGGTGGAGCTACATGAAA +
Preference number: 2 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQATLLPT*RWSYMK
Trigger: TTTCATGTAGCTCCACCTGCATGTGGGTAGTAAAGT...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTTTCAGCTCTGACTCCTaGGTGGCTACCTCTACTCCT +
Preference number: 2 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLFSSDS*VATSTP
Trigger: AGGAGTAGAGGTAGCCACCCAGGAGTCAGAGCTGAA...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCAATCGAACCGGGATGTaGACCATGCCTCCAGGAGTT +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFNRTGM*TMPPGV
Trigger: AACTCCTGGAGGCATGGTCCACATCCCGGTTCGATT...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp GATTTACAAATAGAGTGTCTTTATCCCACCTACCCATCCTGGACATaGCTTCACCCCTATTCCTTCCCCTCCTCATGGAGCCTGAGGGTT +
Preference number: 2 (lower is better)
Translates to: DLQIECLYPTYPSWT*LHPYSFPSSWSLRV
Trigger: AACCCTCAGGCTCCATGAGGAGGGGAAGGAATAGGGGTGAAGCAATGTCCAGGATGGGTAGGTGGGATAAAGACACTCTATTTGTAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTAAGAGAGGGCACAGATaGTTTACAAATAGAGTGTCT +
Preference number: 2 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQAKRGHR*FTNRVS
Trigger: AGACACTCTATTTGTAAATCATCTGTGCCCTCTCTT...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCCCCAGGTTCTGGAACTaGAATCAGAGAGGCAGGATG +
Preference number: 2 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPPRFWN*NQRGRM
Trigger: CATCCTGCCTCTCTGATTGCAGTTCCAGAACCTGGG...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
49% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCAAAAAGTCACCCCAGTaGTCAAGCCATAGCCTCCCA +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFKKSPQ*SSHSLP
Trigger: TGGGAGGCTATGGCTTGAGCACTGGGGTGACTTTTT...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CTTCATCCCTATGATGCCACAGGAAGTGACCTCGAGATTCCACAGGAAGTACATACCTCTACTCCTACTTaGGTCTCTTCCCCAGGTTCT +
Preference number: 2 (lower is better)
Translates to: LHPYDATGSDLEIPQEVHTSTPT*VSSPGS
Trigger: AGAACCTGGGGAAGAGACCCAAGTAGGAGTAGAGGT...ATGTACTTCCTGTGGAATCTCGAGGTCACTTCCTGTGGCATCATAGGGATGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCTCTGAGGACCCTGCTTaGGGTTGGAGGAAATTGAAG +
Preference number: 2 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPSEDPA*GWRKLK
Trigger: CTTCAATTTCCTCCAACCCCAAGCAGGGTCCTCAGA...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCCCCACCTACCCATCCTaGACATTGCTTCACCCCTAT +
Preference number: 2 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPPTYPS*TLLHPY
Trigger: ATAGGGGTGAAGCAATGTCCAGGATGGGTAGGTGGG...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
49% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACATTATGTATCCCTTCTaGACCAACTACAGTACAGAA +
Preference number: 2 (lower is better)
Translates to: LNGETGGMATSLPVPPANIMYPF*TNYSTE
Trigger: TTCTGTACTGTAGTTGGTCCAGAAGGGATACATAAT...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACTCCCCACGTCGCCTaGCTCAAACCAAGTACAAAA +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFTPHVA*LKPSTK
Trigger: TTTTGTACTTGGTTTGAGCCAGGCGACGTGGGGAGT...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTGGCGGGGCACACCTTaGGTTTCTCCCAAATCGAAC +
Preference number: 2 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPWRGTP*VSPKSN
Trigger: GTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCA...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp AGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTTTaGAGCCAGCCTCCAACAGAGGAAGCAGAGGAGAGATTCAATTCT +
Preference number: 2 (lower is better)
Translates to: SSQFSKDCPIPKPFF*SQPPTEEAEERFNS
Trigger: AGAATTGAATCTCTCCTCTGCTTCCTCTGTTGGAGGCTGGCTCAAAAAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp AATCATTCATTTTCACTAGCTTCGTCTCCCATTCGTGCCTGTCAAGGCAAGTTCACTCAATCCTGCCTATaGCTACCAGAAGGGAGGGTG +
Preference number: 2 (lower is better)
Translates to: NHSFSLASSPIRACQGKFTQSCL*LPEGRV
Trigger: CACCCTCCCTTCTGGTAGTCATAGGCAGGATTGAGT...GAACTTGCCTTGACAGGCACGAATGGGAGACGAAGCTAGTGAAAATGAATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAAACACTGGAACATTTCTaGCCAATCAAGATCGTCAAC +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQTLEHF*PIKIVN
Trigger: GTTGACGATCTTGATTGGTCAGAAATGTTCCAGTGT...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp AATACAGACAAAGGTAGAGACAGGACAGAGAACCGTGGGGGAGGGGCAACCACAAAGAGAGGGCACAGATaGTTTACAAATAGAGTGTCT +
Preference number: 2 (lower is better)
Translates to: NTDKGRDRTENRGGGATTKRGHR*FTNRVS
Trigger: AGACACTCTATTTGTAAATCATCTGTGCCCTCTCTT...TGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTGTCTCTACCTTTGTCTGTATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTCACTCACCAACATGGTaGGTGGACCAGCTTACTAAG +
Preference number: 2 (lower is better)
Translates to: GRIQQSILQRLPHPKAILHSPTW*VDQLTK
Trigger: CTTAGTAAGCTGGTCCACTCACCATGTTGGTGAGTG...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTTTCGTCTCCCATTCGTaGCTGTCAAGGCAAGTTCAC +
Preference number: 2 (lower is better)
Translates to: GRIQQSILQRLPHPKAILFVSHS*LSRQVH
Trigger: GTGAACTTGCCTTGACAGGCACGAATGGGAGACGAA...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCAGTACAGACAGAGACTaGAAAATCCCTGCCTTCCGA +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFSTDRD*KIPAFR
Trigger: TCGGAAGGCAGGGATTTTGCAGTCTCTGTCTGTACT...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAAGAAGAAGGTGAAATTTaGCACTTTCGAACCCCTCTT +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQEEGEI*HFRTPL
Trigger: AAGAGGGGTTCGAAAGTGCCAAATTTCACCTTCTTC...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp TTCAGCCTTGAAACACTTACTTTCTTTGGCCATGCTTACTCTCATTaGTTCACCCAAATCAGAGAACACACCCCTCCCTCCTCTGAGACC +
Preference number: 2 (lower is better)
Translates to: FSLETLTFFGHAYSH*FTQIREHTPPSSET
Trigger: GGTCTCAGAGGAGGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAAGTAAGTGTTTCAAGGCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAGGACCTCACAGGAAATaGTTTTCTCTAACCAGTACC +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTGPHRK*FSLTST
Trigger: GGTACTGGTTAGAGAAAATCATTTCCTGTGAGGTCC...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCGAGTCACTTAGAAGATaGGAGGTTGGTGGTTTTGTG +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFESLRR*EVGGFV
Trigger: CACAAAACCACCAACCTCTCATCTTCTAAGTGACTC...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAATACCTCGAAGGCTATTaGTTTCTAGGGATTTTCACA +
Preference number: 2 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQYLEGY*FLGIFT
Trigger: TGTGAAAATCCCTAGAAAGCAATAGCCTTCGAGGTA...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCTTCTCATCCCTGACCTaGATTATGTATCCCTTCTGG +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFFSSLT*IMYPFW
Trigger: CCAGAAGGGATACATAATGCAGGTCAGGGATGAGAA...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCGCAGGTGGAGCTACATaGAATACTGTAAGGTCATTT +
Preference number: 2 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFAGGAT*NTVRSF
Trigger: AAATGACCTTACAGTATTTCATGTAGCTCCACCTGC...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTACAGTACAGAAAGACTaGGGTTGGATTTCAGAAGGG +
Preference number: 2 (lower is better)
Translates to: GRIQQSILQRLPHPKAILTVQKD*GWISEG
Trigger: CCCTTCTGAAATCCAACCTCAGTCTTTCTGTACTGT...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTAGAAGGGGCGGGGAATaGGCTTTGTTATTACTATTA +
Preference number: 2 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLRRGGE*ALLLLL
Trigger: TAATAGTAATAACAAAGCTCATTCCCCGCCCCTTCT...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAACTTTACTACCCACATaGAGGTGGAGCTACATGAAA +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTTLLPT*RWSYMK
Trigger: TTTCATGTAGCTCCACCTGCATGTGGGTAGTAAAGT...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR TCA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTAGGTTTTCCGTGGGATaGACACAGAAAGGGTTAATT +
Preference number: 2 (lower is better)
Translates to: GRIQQSILQRLPHPKAILRFSVG*TQKGLI
Trigger: AATTAACCCTTTCTGTGTTCATCCCACGGAAAACCT...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp GCCCCAACTGTAGAAGATATGTACAAAGTGGTATCAAGAATTGTTTaGGCACTAAAATCTCCATCTGGGCTCAGGGTGGAGATTAGGGAT +
Preference number: 2 (lower is better)
Translates to: APTVEDMYKVVSRIV*ALKSPSGLRVEIRD
Trigger: ATCCCTAATCTCCACCCTGAGCCCAGATGGAGATTTTAGTGCCAAAACAATTCTTGATACCACTTTGTACATATCTTCTACAGTTGGGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR GCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCGATGAGACAGTTCAATaGAGGCAACACTTAACTATC +
Preference number: 2 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPDETVQ*RQHLTI
Trigger: GATAGTTAAGTGTTGCCTGCATTGAACTGTCTCATC...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAAGTTCCGAGGAAGTTTaGCACTTTTTGCTTTTAAAG +
Preference number: 2 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTSSEEV*HFLLLK
Trigger: CTTTAAAAGCAAAAAGTGCCAAACTTCCTCGGAACT...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 90 bp CTGGATATTGGATGGACAAGTTCAGCCTTGAAACACTTACTTTCTTaGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACA +
Preference number: 2 (lower is better)
Translates to: LDIGWTSSALKHLLS*AMLTLICSPKSENT
Trigger: TGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAAGTAAGTGTTTCAAGGCTGAACTTGTCCATCCAATATCCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CCA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCAGTTCCGAGGAAGTTTaGCACTTTTTGCTTTTAAAG +
Preference number: 2 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPSSEEV*HFLLLK
Trigger: CTTTAAAAGCAAAAAGTGCCAAACTTCCTCGGAACT...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp GCGAGTCTGACGGTCGAGTGGGGCGGGCTGGAGCAATaGGGCCGCAGGTTCCCGTGGTGGCCGGTGGTGATG +
Preference number: 3 (lower is better)
Translates to: ASLTVEWGGLEQ*GRRFPWWPVVM
Trigger: CATCACCACCGGCCACCACGGGAACCTGCGGCCTCATTGCTCCAGCCCGCCCCACTCGACCGTCAGACTCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp ACGACGCCGGCCTCAATTCCGGATGGCGCTTGGGGCTaGTGCCCTGGGCAGAAGGCCTGTCTGGCTGTCCGA +
Preference number: 3 (lower is better)
Translates to: TTPASIPDGAWG*CPGQKACLAVR
Trigger: TCGGACAGCCAGACAGGCCTTCTGCCCAGGGCATCAGCCCCAAGCGCCATCCGGAATTGAGGCCGGCGTCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp AGGGAAGAGAGTGCGGTGACCCCAGCCAAGAGCTTCTaGAGGTGGCAGAGAGGAAGTGGGCGGCGGCGCTGG +
Preference number: 3 (lower is better)
Translates to: REESAVTPAKSF*RWQRGSGRRRW
Trigger: CCAGCGCCGCCGCCCACTTCCTCTCTGCCACCTCCAGAAGCTCTTGGCTGGGGTCACCGCACTCTCTTCCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGGCCAGCCGCGGGGCTaGGACCTTTCCTCTAACGGT +
Preference number: 3 (lower is better)
Translates to: CIAPSTWPRAILVLLESRGQPRG*DLSSNG
Trigger: ACCGTTAGAGGAAAGGTCCAAGCCCCGCGGCTGGCC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp ATAGCCGTGGGGACCCGATGGAACGGACACACCAGCTaGGGCATCGAGACCGCTGACTGTGGTGGAGAGAGG +
Preference number: 3 (lower is better)
Translates to: IAVGTRWNGHTS*GIETADCGGER
Trigger: CCTCTCTCCACCACAGTCAGCGGTCTCGATGCCCCAGCTGGTGTGTCCGTTCCATCGGGTCCCCACGGCTAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp CTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTaGAGTCGAGGAGCTGCTCCCAGTGGACACGGGTGT +
Preference number: 3 (lower is better)
Translates to: LQAPGPGLFWCY*SRGAAPSGHGC
Trigger: ACACCCGTGTCCACTGGGAGCAGCTCCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp AGTTCAGGTTTTGACGACGCCGGCCTCAATTCCGGATaGCGCTTGGGGCTGATGCCCTGGGCAGAAGGCCTG +
Preference number: 3 (lower is better)
Translates to: SSGFDDAGLNSG*RLGLMPWAEGL
Trigger: CAGGCCTTCTGCCCAGGGCATCAGCCCCAAGCGCCATCCGGAATTGAGGCCGGCGTCGTCAAAACCTGAACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp ATTGCGGCAAAATTTTCCCGCCCACGGAGAGATGGCTaGGAGAGGGCAAAGCTGATGACCGGGCAGGCTGGC +
Preference number: 3 (lower is better)
Translates to: IAAKFSRPRRDG*ERAKLMTGQAG
Trigger: GCCAGCCTGCCCGGTCATCAGCTTTGCCCTCTCCCAGCCATCTCTCCGTGGGCGGGAAAATTTTGCCGCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp AAAGCCCCCTCCTCAGTCGTCACTCAATCCTGCCTATaGCTACCAGAAGGGAGGGTGCAGCCAGGCCTACCC +
Preference number: 3 (lower is better)
Translates to: KAPSSVVTQSCL*LPEGRVQPGLP
Trigger: GGGTAGGCCTGGCTGCACCCTCCCTTCTGGTAGTCATAGGCAGGATTGAGTGACGACTGAGGAGGGGGCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp TCTGTGCTCCCCCATGGTGACAACCAGTTCAGGTTTTaGCGACGCCGGCCTCAATTCCGGATGGCGCTTGGG +
Preference number: 3 (lower is better)
Translates to: SVLPHGDNQFRF*RRRPQFRMALG
Trigger: CCCAAGCGCCATCCGGAATTGAGGCCGGCGTCGTCAAAACCTGAACTGGTTGTCACCATGGGGGAGCACAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 72 bp TCCTGGGCCTCGCACAATAGTGTGGCTCACAGGACCTaGAGCATCCCAGAGCTGGAGTCATTCCCAGCAGGA +
Preference number: 3 (lower is better)
Translates to: SWASHNSVAHRT*SIPELESFPAG
Trigger: TCCTGCTGGGAATGACTCCAGCTCTGGGATGCTGCAGGTCCTGTGAGCCACACTATTGTGCGAGGCCCAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TTACAGCCAGCTGCTCCTGGGCCTCGCACAATAGTGTaGCTCACAGGACCTGCAGCATCCCAGAGCTGGAGT +
Preference number: 3 (lower is better)
Translates to: LQPAAPGPRTIV*LTGPAASQSWS
Trigger: ACTCCAGCTCTGGGATGCTGCAGGTCCTGTGAGCCACACTATTGTGCGAGGCCCAGGAGCAGCTGGCTGTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp ATTCTGGTGCTACTGGAGTCGAGGAGCTGCTCCCAGTaGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTG +
Preference number: 3 (lower is better)
Translates to: ILVLLESRSCSQ*TRVSRSCLWVL
Trigger: CAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACTGGGAGCAGCTCCTCGACTCCAGTAGCACCAGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTCAAAGGGGGTTCTCCTaGGCTGGTGGAATTTGGGGG +
Preference number: 3 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAQRGFS*AGGIWG
Trigger: CCCCCAAATTCCACCAGCCAAGGAGAACCCCCTTTG...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp TGGGATGCAAGGAGGCCGGTCAGATCCTTTGCGATCTaGTTGGCTAACAGGCAGAAGGGGCGGGGAATGAGC +
Preference number: 3 (lower is better)
Translates to: WDARRPVRSFAI*LANRQKGRGMS
Trigger: GCTCATTCCCCGCCCCTTCTGCCTGTTAGCCAATCAGATCGCAAAGGATCTGACCGGCCTCCTTGCATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp GAGGAGTGTAGAGGGAGGAGGGGGAATCTTAGGGACTaGCCACTGTCCAACACCGGAAGCGCATGCTTCATC +
Preference number: 3 (lower is better)
Translates to: EECRGRRGNLRD*PLSNTGSACFI
Trigger: GATGAAGCATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTCTACACTCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGACTTTCGAACCCCTCTaGTCATGCTTTGAGGTCCTT +
Preference number: 3 (lower is better)
Translates to: CIAPSTWPRAILVLLESRTFEPL*SCFEVL
Trigger: AAGGACCTCAAAGCATGACAAGAGGGGTTCGAAAGT...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp TTTCAGATAGCCCTGGCTGGTGGGGGAATGGATCCCTaGGAACACGGGCATGTCACACAGGGAATGGACCCA +
Preference number: 3 (lower is better)
Translates to: FQIALAGGGMDP*EHGHVTQGMDP
Trigger: TGGGTCCATTCCCTGTGTGACATGCCCGTGTTCTCAGGGATCCATTCCCCCACCAGCCAGGGCTATCTGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp GGTGTTGGCCACAGGGGCGGGCTGAAGAAACAGAACTaGGGTGGGAACGGAGGTCCGATATTCCAAGGGATT +
Preference number: 3 (lower is better)
Translates to: GVGHRGGLKKQN*GGNGGPIFQGI
Trigger: AATCCCTTGGAATATCGGACCTCCGTTCCCACCTCAGTTCTGTTTCTTCAGCCCGCCCCTGTGGCCAACACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp AGCAATGAGGCCGCAGGTTCCCGTGGTGGCCGGTGGTaGTGGAGTCACTTAGAAGATGAGAGGTTGGTGGTT +
Preference number: 3 (lower is better)
Translates to: SNEAAGSRGGRW*WSHLEDERLVV
Trigger: AACCACCAACCTCTCATCTTCTAAGTGACTCCATCACCACCGGCCACCACGGGAACCTGCGGCCTCATTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TTCTGGAGGTGGCAGAGAGGAAGTGGGCGGCGGCGCTaGTCAAAGAGGATGGAAGGAAATCAGTTAAGAGGG +
Preference number: 3 (lower is better)
Translates to: FWRWQRGSGRRR*SKRMEGNQLRG
Trigger: CCCTCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCTCTGCCACCTCCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTCAGAGAGGCAGGATGTaGTGTTTGGGAGAGGCACCT +
Preference number: 3 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQAQRGRM*CLGEAP
Trigger: AGGTGCCTCTCCCAAACACAACATCCTGCCTCTCTG...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGTACCTCGAAGGCTATaGCTTTCTAGGGATTTTCAC +
Preference number: 3 (lower is better)
Translates to: CIAPSTWPRAILVLLESRVPRRL*LSRDFH
Trigger: GTGAAAATCCCTAGAAAGCAATAGCCTTCGAGGTAC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp CATGTCACACAGGGAATGGACCCAGACTCCAGCCAATaGGCTTATGGAAAGCAGGCTGTCCAAGAGAGGGCA +
Preference number: 3 (lower is better)
Translates to: HVTQGMDPDSSQ*AYGKQAVQERA
Trigger: TGCCCTCTCTTGGACAGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp GGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTaGCTGCTGGTGACCATGGTTCCCAGGACTGGATAT +
Preference number: 3 (lower is better)
Translates to: GVQELSVGSVYV*LLVTMVPRTGY
Trigger: ATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TGTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTACCTCTACTCCTACTaGGGTCTCTTCCCCAGGTTC +
Preference number: 3 (lower is better)
Translates to: CHTGNGPRLQPMGLWKAGYLYSY*GLFPRF
Trigger: GAACCTGGGGAAGAGACCCAAGTAGGAGTAGAGGTA...GCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTTACCCATCCTGGACATaGCTTCACCCCTATTCCTTC +
Preference number: 3 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAYPSWT*LHPYSF
Trigger: GAAGGAATAGGGGTGAAGCAATGTCCAGGATGGGTA...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCCTTGGCTGGTGGAATTaGGGGGAGAGGAATCCAAAA +
Preference number: 3 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTLGWWN*GERNPK
Trigger: TTTTGGATTCCTCTCCCCCAAATTCCACCAGCCAAG...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp GTTGTGTTTGGGAGAGGCACCTCATTCCAGGTGACCTaGAGGCTCCCTCCCCTCCTCCCATATGTTAACAAC +
Preference number: 3 (lower is better)
Translates to: VVFGRGTSFQVT*RLPPLLPYVNN
Trigger: GTTGTTAACATATGGGAGGAGGGGAGGGAGCCTTCAGGTCACCTGGAATGAGGTGCCTCTCCCAAACACAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp AAAGTAATAAGGATGGTGTTGGCCACAGGGGCGGGCTaGAGAAACAGAACTGAGGTGGGAACGGAGGTCCGA +
Preference number: 3 (lower is better)
Translates to: KVIRMVLATGAG*RNRTEVGTEVR
Trigger: TCGGACCTCCGTTCCCACCTCAGTTCTGTTTCTTCAGCCCGCCCCTGTGGCCAACACCATCCTTATTACTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp AGCTCTGACTCCTGGGTGGCTACCTCTACTCCTACTTaGGTCTCTTCCCCAGGTTCTGGAACTGCAATCAGA +
Preference number: 3 (lower is better)
Translates to: SSDSWVATSTPT*VSSPGSGTAIR
Trigger: TCTGATTGCAGTTCCAGAACCTGGGGAAGAGACCCAAGTAGGAGTAGAGGTAGCCACCCAGGAGTCAGAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TGTTTGAAACCCCTCACTTCAGCTCTGACTCCTGGGTaGCTACCTCTACTCCTACTTGGGTCTCTTCCCCAG +
Preference number: 3 (lower is better)
Translates to: CLKPLTSALTPG*LPLLLLGSLPQ
Trigger: CTGGGGAAGAGACCCAAGTAGGAGTAGAGGTAGCCACCCAGGAGTCAGAGCTGAAGTGAGGGGTTTCAAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp GCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTaGACCATGCCTCCAGGAGTTGAGATGCCAACACAA +
Preference number: 3 (lower is better)
Translates to: AHLGFLPNRTGM*TMPPGVEMPTQ
Trigger: TTGTGTTGGCATCTCAACTCCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTGGGGGCCTCCCAGGCTaGAAGGCTGTAGTAGGCATC +
Preference number: 3 (lower is better)
Translates to: GRIQQSILQRLPHPKAILGGLPG*KAVVGI
Trigger: GATGCCTACTACAGCCTTCAAGCCTGGGAGGCCCCC...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp TGCTGGGGGCAGGGGTATCGGAAGCAGGAGGGCAGATaGGACAGTTCAATGCAGGCAACACTTAACTATCTT +
Preference number: 3 (lower is better)
Translates to: CWGQGYRKQEGR*DSSMQATLNYL
Trigger: AAGATAGTTAAGTGTTGCCTGCATTGAACTGTCTCATCTGCCCTCCTGCTTCCGATACCCCTGCCCCCAGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 72 bp CTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTaGCTTCCGATCCCTGCCCTGCTAATTATTGCGGCA +
Preference number: 3 (lower is better)
Translates to: LQVQYRQRLQNP*LPIPALLIIAA
Trigger: TGCCGCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TCTGGAACTGCAATCAGAGAGGCAGGATGTTGTGTTTaGGAGAGGCACCTCATTCCAGGTGACCTGAAGGCT +
Preference number: 3 (lower is better)
Translates to: SGTAIREAGCCV*ERHLIPGDLKA
Trigger: AGCCTTCAGGTCACCTGGAATGAGGTGCCTCTCCCAAACACAACATCCTGCCTCTCTGATTGCAGTTCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp CTCTCGAGATCCTTAACATTTTGGCGGGGCACACCTTaGGTTTCTCCCAAATCGAACCGGGATGTGGACCAT +
Preference number: 3 (lower is better)
Translates to: LSRSLTFWRGTP*VSPKSNRDVDH
Trigger: ATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCAAAATGTTAAGGATCTCGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTTTTCACATTTTGATTTaGGGGTGGCTCTCTAGCACG +
Preference number: 3 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAFHILI*GWLSST
Trigger: CGTGCTAGAGAGCCACCCCAAAATCAAAATGTGAAA...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAAAACACTTACTTTCTTaGGCCATGCTTACTCTCATT +
Preference number: 3 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGKHLLS*AMLTLI
Trigger: AATGAGAGTAAGCATGGCCAAAGAAAGTAAGTGTTT...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp GTTGGGCTAGCAAAAGAGGGTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGATACCTCTACTCCTACTaGGGTCTCTTCCCCAGGTTC +
Preference number: 3 (lower is better)
Translates to: VGLAKEGGVFLSIPSFNGYLYSY*GLFPRF
Trigger: GAACCTGGGGAAGAGACCCAAGTAGGAGTAGAGGTA...TCCATTGAAACTGGGGATGGAGAGAAAGACTCCACCCTCTTTTGCTAGCCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAGGACCCTGCTTGGGGTaGGAGGAAATTGAAGGTGCT +
Preference number: 3 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTGPCLG*EEIEGA
Trigger: AGCACCTTCAATTTCCTCCAACCCCAAGCAGGGTCC...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAATACCCATCCTGGACATaGCTTCACCCCTATTCCTTC +
Preference number: 3 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQYPSWT*LHPYSF
Trigger: GAAGGAATAGGGGTGAAGCAATGTCCAGGATGGGTA...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGACCAGTTTCAATGGATTaGCCCAGAGAAAGGCAAAGG +
Preference number: 3 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRPVSMD*PRERQR
Trigger: CCTTTGCCTTTCTCTGGGCAAATCCATTGAAACTGG...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp GTCTCAGCAATCCTAGTCTATAGGTTTTTCAGGCCCTaGCTCTTCAGAGCTGACCAGAGCCACCATGCCAAG +
Preference number: 3 (lower is better)
Translates to: VSAILVYRFFRP*LFRADQSHHAK
Trigger: CTTGGCATGGTGGCTCTGGTCAGCTCTGAAGAGTCAGGGCCTGAAAAACCTATAGACTAGGATTGCTGAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp TCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTTTTaGGCCAGCCTCCAACAGAGGAAGCAGAGGAGAGAT +
Preference number: 3 (lower is better)
Translates to: SPKTAPSQSHSF*ASLQQRKQRRD
Trigger: ATCTCTCCTCTGCTTCCTCTGTTGGAGGCTGGCTCAAAAAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 72 bp TACTCCTACTTGGGTCTCTTCCCCAGGTTCTGGAACTaGAATCAGAGAGGCAGGATGTTGTGTTTGGGAGAG +
Preference number: 3 (lower is better)
Translates to: YSYLGLFPRFWN*NQRGRMLCLGE
Trigger: CTCTCCCAAACACAACATCCTGCCTCTCTGATTGCAGTTCCAGAACCTGGGGAAGAGACCCAAGTAGGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 72 bp CAACGGAGAAAGTTACACTTCCATTCCAGGGAATACTaGAGGGGGAGAGAGGAGCTGAGGAAATGTGGGGAT +
Preference number: 3 (lower is better)
Translates to: QRRKLHFHSREY*RGREELRKCGD
Trigger: ATCCCCACATTTCCTCAGCTCCTCTCTCCCCCTGCAGTATTCCCTGGAATGGAAGTGTAACTTTCTCCGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TCTATGTTTGAAACCCCTCACTTCAGCTCTGACTCCTaGGTGGCTACCTCTACTCCTACTTGGGTCTCTTCC +
Preference number: 3 (lower is better)
Translates to: SMFETPHFSSDS*VATSTPTWVSS
Trigger: GGAAGAGACCCAAGTAGGAGTAGAGGTAGCCACCCAGGAGTCAGAGCTGAAGTGAGGGGTTTCAAACATAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCCAAAGGGGGTTCTCCTaGGCTGGTGGAATTTGGGGG +
Preference number: 3 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPQRGFS*AGGIWG
Trigger: CCCCCAAATTCCACCAGCCAAGGAGAACCCCCTTTG...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp TGGACGCCTAGATTGCCACCTTCACCGCTGCTCTGGTaGACGCTTTTGCAAATTAACCTGTTAGGCTCGAAA +
Preference number: 3 (lower is better)
Translates to: WTPRLPPSPLLW*TLLQINLLGSK
Trigger: TTTCGAGCCTAACAGGTTAATTTGCAAAAGCGTTCACCAGAGCAGCGGTGAAGGTGGCAATCTAGGCGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TTTGCAAGGCTCACTGAACTCTACACCAGATCACACTaGCCTGACAGAGCCACCATACATTTGGCTCATCCA +
Preference number: 3 (lower is better)
Translates to: FARLTELYTRSH*PDRATIHLAHP
Trigger: TGGATGAGCCAAATGTATGGTGGCTCTGTCAGGCCAGTGTGATCTGGTGTAGAGTTCAGTGAGCCTTGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp AATCATTCATTTTCACTAGCTTCGTCTCCCATTCGTGCCTGTCAAGGCAAGTTCCAGAGAGGCAGGATGTaGTGTTTGGGAGAGGCACCT +
Preference number: 3 (lower is better)
Translates to: NHSFSLASSPIRACQGKFQRGRM*CLGEAP
Trigger: AGGTGCCTCTCCCAAACACAACATCCTGCCTCTCTG...GAACTTGCCTTGACAGGCACGAATGGGAGACGAAGCTAGTGAAAATGAATGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp CAACACTTAACTATCTTACTAAGCACCTACTGGTGCTaGAGAGTGGGATGCAAGGAGGCCGGTCAGATCCTT +
Preference number: 3 (lower is better)
Translates to: QHLTILLSTYWC*RVGCKEAGQIL
Trigger: AAGGATCTGACCGGCCTCCTTGCATCCCACTCTTCAGCACCAGTAGGTGCTTAGTAAGATAGTTAAGTGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp AAATCGAACCGGGATGTGGACCATGCCTCCAGGAGTTaGGATGCCAACACAAATAAGAGAGAGAGAGAGAGA +
Preference number: 3 (lower is better)
Translates to: KSNRDVDHASRS*DANTNKRERER
Trigger: TCTCTCTCTCTCTCTCTTATTTGTGTTGGCATCTCAACTCCTGGAGGCATGGTCCACATCCCGGTTCGATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR GCA 72 bp TCCCAGGAAGAATTCAGCAGTCAATTCTCCAAAGACTaGCCCATCCCAAAGCCATTCTTTTTGAGCCAGCCT +
Preference number: 3 (lower is better)
Translates to: SQEEFSSQFSKD*PIPKPFFLSQP
Trigger: AGGCTGGCTCAAAAAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCCTGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTaGATGGACAAGTTCAGCCTTGAAACACTTACTTTC +
Preference number: 3 (lower is better)
Translates to: WLLVTMVPRTGY*MDKFSLETLTF
Trigger: GAAAGTAAGTGTTTCAAGGCTGAACTTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTCTTGGCTGGTGGAATTaGGGGGAGAGGAATCCAAAA +
Preference number: 3 (lower is better)
Translates to: GRIQQSILQRLPHPKAILLGWWN*GERNPK
Trigger: TTTTGGATTCCTCTCCCCCAAATTCCACCAGCCAAG...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCCCAGTTTCAATGGATTaGCCCAGAGAAAGGCAAAGG +
Preference number: 3 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPPVSMD*PRERQR
Trigger: CCTTTGCCTTTCTCTGGGCAAATCCATTGAAACTGG...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACATTTCACATTTTGATTTaGGGGTGGCTCTCTAGCACG +
Preference number: 3 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTFHILI*GWLSST
Trigger: CGTGCTAGAGAGCCACCCCAAAATCAAAATGTGAAA...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCGATATTCCAAGGGATTaGGTTGGTCAAGAGTGGAGA +
Preference number: 3 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPDIPRD*VGQEWR
Trigger: TCTCCACTCTTGACCAACCAAATCCCTTGGAATATC...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp TGGCTTCCCTGCCAGACACACAGGTTTTCCGTGGGATaGACACAGAAAGGGTTAATTAAAAGAGTTCGATGG +
Preference number: 3 (lower is better)
Translates to: WLPCQTHRFSVG*TQKGLIKRVRW
Trigger: CCATCGAACTCTTTTAATTAACCCTTTCTGTGTTCATCCCACGGAAAACCTGTGTGTCTGGCAGGGAAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp TTACAAATAGAGTGTCTTTATCCCACCTACCCATCCTaGACATTGCTTCACCCCTATTCCTTCCCCTCCTCA +
Preference number: 3 (lower is better)
Translates to: LQIECLYPTYPS*TLLHPYSFPSS
Trigger: TGAGGAGGGGAAGGAATAGGGGTGAAGCAATGTCCAGGATGGGTAGGTGGGATAAAGACACTCTATTTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp GTTGGGCTAGCAAAAGAGGGTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGACAGTTCCGAGGAAGTTaGGCACTTTTTGCTTTTAAA +
Preference number: 3 (lower is better)
Translates to: VGLAKEGGVFLSIPSFNGQFRGS*ALFAFK
Trigger: TTTAAAAGCAAAAAGTGCCAAACTTCCTCGGAACTG...TCCATTGAAACTGGGGATGGAGAGAAAGACTCCACCCTCTTTTGCTAGCCCAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR-3UTR CAA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCACTTTCGAACCCCTCTaGTCATGCTTTGAGGTCCTT +
Preference number: 3 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPTFEPL*SCFEVL
Trigger: AAGGACCTCAAAGCATGACAAGAGGGGTTCGAAAGT...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp CTGAGTCTAATAAGGCTGAGCACACTGGAACATTTCTaGCCAATCAAGATCGTCAACATACACCAGCTCCCT +
Preference number: 3 (lower is better)
Translates to: LSLIRLSTLEHF*PIKIVNIHQLP
Trigger: AGGGAGCTGGTGTATGTTGACGATCTTGATTGGTCAGAAATGTTCCAGTGTGCTCAGCCTTATTAGACTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR TCA 72 bp CTTATGGAAAGCAGGCTGTCCAAGAGAGGGCACAGATaGTTTACAAATAGAGTGTCTTTATCCCACCTACCC +
Preference number: 3 (lower is better)
Translates to: LMESRLSKRGHR*FTNRVSLSHLP
Trigger: GGGTAGGTGGGATAAAGACACTCTATTTGTAAATCATCTGTGCCCTCTCTTGGACAGCCTGCTTTCCATAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp GAGAGAGAGAAAGAGAGAGACACTCCCCACGTCGCCTaGCTCAAACCAAGTACAAAAGTGACTATTTACAAT +
Preference number: 3 (lower is better)
Translates to: EREKERDTPHVA*LKPSTKVTIYN
Trigger: ATTGTAAATAGTCACTTTTGTACTTGGTTTGAGCCAGGCGACGTGGGGAGTGTCTCTCTCTTTCTCTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CCA 72 bp ATGCAAGGGAGAACCTCCTCTCCTTTTTCAAATAGCTaGAGACCAGCTAGCCATAAAGTAATAAGGATGGTG +
Preference number: 3 (lower is better)
Translates to: MQGRTSSPFSNS*RPASHKVIRMV
Trigger: CACCATCCTTATTACTTTATGGCTAGCTGGTCTCCAGCTATTTGAAAAAGGAGAGGAGGTTCTCCCTTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAAGGACGCCAGGAGGTTaGCTGCTGCGGCGGCGGCGG +
Preference number: 4 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGRTPGG*LLRRRR
Trigger: CCGCCGCCGCCGCAGCAGCCAACCTCCTGGCGTCCT...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGATGGCCAGCAGGTCGGTaGCCGAGAAGGCGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGWPAGR*PRRRAA
Trigger: CGCTGCCCGCCTTCTCGGGCACCGACCTGCTGGCCA...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGCCCGCCGGTTCCGCGTaGCGGGCAGGAACTCGCCCT +
Preference number: 4 (lower is better)
Translates to: GTPWVSPKSNRDVDHASRPAGSA*RAGTRP
Trigger: AGGGCGAGTTCCTGCCCGGCACGCGGAACCGGCGGG...CCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATACGTAGGGCGAGCCGGTaGGGTTGGAGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIRRASR*GWSWPR
Trigger: CCGTGGCCAACTCCAACCCCACCGGCTCGCCCTACG...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp GGTTTTGACGACGCCGGCCTCAATTCCGGATGGCGCTaGGGGCTGATGCCCTGGGCAGAAGGCCTGTCTGGC +
Preference number: 4 (lower is better)
Translates to: GFDDAGLNSGWR*GLMPWAEGLSG
Trigger: GCCAGACAGGCCTTCTGCCCAGGGCATCAGCCCCAAGCGCCATCCGGAATTGAGGCCGGCGTCGTCAAAACC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp TTGAATGGAGAAACTGGAGGCATGGCCACTTCACTGCCCGTCCCACCCGCAAACCGCCAGGAGGTTGGCTaGTGCGGCGGCGGCGGGGTT +
Preference number: 4 (lower is better)
Translates to: LNGETGGMATSLPVPPANRQEVG*CGGGGV
Trigger: AACCCCGCCGCCGCCGCAGCAGCCAACCTCCTGGCG...GTTTGCGGGTGGGACGGGCAGTGAAGTGGCCATGCCTCCAGTTTCTCCATTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGCGTCTTGCCCCCTTTaGCCAGGATGGCCCCCACCA +
Preference number: 4 (lower is better)
Translates to: CIAPSTWPRAILVLLESRASCPL*PGWPPP
Trigger: TGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AGTGTAGAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAGCGAGCCGGTGGGGTTaGAGTTGGCCACGGGCCCCG +
Preference number: 4 (lower is better)
Translates to: SVEGGGGILGTGHCPTPEASRWG*SWPRAP
Trigger: CGGGGCCCGTGGCCAACTCCAACCCCACCGGCTCGC...TTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTCTACACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGACCCCTTTGCCCAGGATaGCCCCCACCAGGTTCTCGG +
Preference number: 4 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGPLCPG*PPPGSR
Trigger: CCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGG...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GAGGCAGAGGAGAATGCTGGGGGCAGGGGTATCGGAAGCAGGAGGGCAGATGAGCCCCTTTGCCCAGGATaGCCCCCACCAGGTTCTCGG +
Preference number: 4 (lower is better)
Translates to: EAEENAGGRGIGSRRADEPLCPG*PPPGSR
Trigger: CCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGG...CTCATCTGCCCTCCTGCTTCCGATACCCCTGCCCCCAGCATTCTCCTCTGCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCGCGCTCACGGCCTTGTaGACCTGCTCCGGCTCGCCG +
Preference number: 4 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTALTAL*TCSGSP
Trigger: CGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGC...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATACCCTTCTTGGAGATCTaGATGCGCGCGCCCGTCAGC +
Preference number: 4 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIPFLEI*MRAPVS
Trigger: GCTGACGGGCGCGCGCATCCAGATCTCCAAGAAGGG...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGATGCTGTTGGGGACGATaGGCTTGGCCTGCTTGGCTC +
Preference number: 4 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGCCWGR*AWPAWL
Trigger: GAGCCAAGCAGGCCAAGCTCATCGTCCCCAACAGCA...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATATGCTGTTGGGGACGATaGGCTTGGCCTGCTTGGCTC +
Preference number: 4 (lower is better)
Translates to: SLLPVGGPVHPSQLSELICCWGR*AWPAWL
Trigger: GAGCCAAGCAGGCCAAGCTCATCGTCCCCAACAGCA...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATACCTCTCCCGTGTTGCTaGGCTTGGTGCAGACCACCT +
Preference number: 4 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIPLPCC*AWCRPP
Trigger: AGGTGGTCTGCACCAAGCGCAGCAACACGGGAGAGG...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTACGGCCTTGTGCACCTaGTCCGGCTCGCCGCTCACG +
Preference number: 4 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAATALCT*SGSPLT
Trigger: CGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGT...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp AATACAGACAAAGGTAGAGACAGGACAGAGAACCGTGGGGGAGGGGCAACCACACGCCAGGAGGTTGGCTaGTGCGGCGGCGGCGGGGTT +
Preference number: 4 (lower is better)
Translates to: NTDKGRDRTENRGGGATTRQEVG*CGGGGV
Trigger: AACCCCGCCGCCGCCGCAGCAGCCAACCTCCTGGCG...TGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTGTCTCTACCTTTGTCTGTATT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGCCGTGTTGCTGCGCTTaGTGCAGACCACCTCGGGGG +
Preference number: 4 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQPCCCA*CRPPRG
Trigger: CCCCCGAGGTGGTCTGCACCAAGCGCAGCAACACGG...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCCGTAGGGCGAGCCGGTaGGGTTGGAGTTGGCCACGG +
Preference number: 4 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTRRASR*GWSWPR
Trigger: CCGTGGCCAACTCCAACCCCACCGGCTCGCCCTACG...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATAGGAACTCGCCCTTCTTaGAGATCTGGATGCGCGCGC +
Preference number: 4 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIGTRPS*RSGCAR
Trigger: GCGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCC...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGACTCCTCCCTTACCGATaGTCAGTCCTGCCGTGCTGT +
Preference number: 4 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGLLPYR*SVLPCC
Trigger: ACAGCACGGCAGGACTGATCATCGGTAAGGGAGGAG...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGTGGCTGATGAGGTATTaGGCGGCTTGCGTGGCCGCG +
Preference number: 4 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGEWLMRY*AACVAA
Trigger: CGCGGCCACGCAAGCCGCTCAATACCTCATCAGCCA...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGTGGCTGATGAGGTATTaGGCGGCTTGCGTGGCCGCG +
Preference number: 4 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQWLMRY*AACVAA
Trigger: CGCGGCCACGCAAGCCGCTCAATACCTCATCAGCCA...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GGGGTCTTGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGACTTCCTCTCCCGTGTTaGTGCGCTTGGTGCAGACCA +
Preference number: 4 (lower is better)
Translates to: GVLHRSKHLAPGYSGATGLPLPC*CAWCRP
Trigger: TGGTCTGCACCAAGCGCAGCAACACGGGAGAGGAAG...TCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCAAGACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCCAGGAGGTTGGCTGCTaGGGCGGCGGCGGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: QTETAKSLPSDPCPANYCQEVGC*GGGGVG
Trigger: GCCAACCCCGCCGCCGCCGCAGCAGCCAACCTCCTG...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCGCGAGCCGGTGGGGTTaGAGTTGGCCACGGGCCCCG +
Preference number: 4 (lower is better)
Translates to: QTETAKSLPSDPCPANYCASRWG*SWPRAP
Trigger: CGGGGCCCGTGGCCAACTCCAACCCCACCGGCTCGC...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCTCTCCACCAGCTCCTTaGCGCTCTCGGCCGCCAGCT +
Preference number: 4 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTSPPAP*RSRPPA
Trigger: AGCTGGCGGCCGAGAGCGCCAAGGAGCTGGTGGAGA...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAGCGCATTCTTCCTGTACCTTCTaGACGATGGCGCTCACGGCC +
Preference number: 4 (lower is better)
Translates to: EGGGGILGTGHCPTPEAHSSCTF*TMALTA
Trigger: GGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGA...ATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GTTGGGCTAGCAAAAGAGGGTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGAAGGACGCCAGGAGGTTaGCTGCTGCGGCGGCGGCGG +
Preference number: 4 (lower is better)
Translates to: VGLAKEGGVFLSIPSFNGRTPGG*LLRRRR
Trigger: CCGCCGCCGCCGCAGCAGCCAACCTCCTGGCGTCCT...TCCATTGAAACTGGGGATGGAGAGAAAGACTCCACCCTCTTTTGCTAGCCCAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCCTTCTTGGAGATCTaGATGCGCGCGCCCGTCAGC +
Preference number: 4 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTPFLEI*MRAPVS
Trigger: GCTGACGGGCGCGCGCATCCAGATCTCCAAGAAGGG...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp AGAGACTTTCCCTCCCTCCTGCCACTAAGCGGGAGGTaGTCTATGCCTCCGATGATAGCCGTGGGGACCCGA +
Preference number: 4 (lower is better)
Translates to: RDFPSLLPLSGR*SMPPMIAVGTR
Trigger: TCGGGTCCCCACGGCTATCATCGGAGGCATAGACAACCTCCCGCTTAGTGGCAGGAGGGAGGGAAAGTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGTCAAGGCCTCTGCCGTaGCCTGTACTAGGCATACCC +
Preference number: 4 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGESRPLP*PVLGIP
Trigger: GGGTATGCCTAGTACAGGGCACGGCAGAGGCCTTGA...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCCAGGAGGTTGGCTGCTaGGGCGGCGGCGGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPQEVGC*GGGGVG
Trigger: GCCAACCCCGCCGCCGCCGCAGCAGCCAACCTCCTG...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp ATCTCAAGAACAAAGGCTTTCTCTCCCTCCTCCCGGTCGGAGGACCTGTGCACCTCTTGGAGATCTGGATaGGCGCGCCCGTCAGCTCCT +
Preference number: 4 (lower is better)
Translates to: ISRTKAFSPSSRSEDLCTSWRSG*ARPSAP
Trigger: AGGAGCTGACGGGCGCGCGCATCCAGATCTCCAAGA...GGTGCACAGGTCCTCCGACCGGGAGGAGGGAGAGAAAGCCTTTGTTCTTGAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTCCCGCCGGTTCCGCGTaGCGGGCAGGAACTCGCCCT +
Preference number: 4 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLPAGSA*RAGTRP
Trigger: AGGGCGAGTTCCTGCCCGGCACGCGGAACCGGCGGG...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGATCTCCACCAGCTCCTTaGCGCTCTCGGCCGCCAGCT +
Preference number: 4 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRSPPAP*RSRPPA
Trigger: AGCTGGCGGCCGAGAGCGCCAAGGAGCTGGTGGAGA...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTGGAACTCGCCCTTCTTaGAGATCTGGATGCGCGCGC +
Preference number: 4 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAGTRPS*RSGCAR
Trigger: GCGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCC...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp GAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAGCGCATGGCTTGGTCATCGCTTaGGGGATTTCTCGGACCTTT +
Preference number: 4 (lower is better)
Translates to: EGGGGILGTGHCPTPEAHGLVIA*GISRTF
Trigger: AAAGGTCCGAGAAATCCCTCAAGCGATGACCAAGCC...ATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp AGTGTAGAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAAGGCAGCTGCTGCTCTaGGGGTCTTCCTGTACCTTC +
Preference number: 4 (lower is better)
Translates to: SVEGGGGILGTGHCPTPERQLLL*GSSCTF
Trigger: GAAGGTACAGGAAGACCCGCAGAGCAGCAGCTGCCT...TTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTCTACACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp CTTCATCCCTATGATGCCACAGGAAGTGACCTCGAGATTCCACAGGAAGTACATTGGCCAGCAGGTCGGTaGCCGAGAAGGCGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: LHPYDATGSDLEIPQEVHWPAGR*PRRRAA
Trigger: CGCTGCCCGCCTTCTCGGGCACCGACCTGCTGGCCA...ATGTACTTCCTGTGGAATCTCGAGGTCACTTCCTGTGGCATCATAGGGATGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAACCGTGTTGCTGCGCTTaGTGCAGACCACCTCGGGGG +
Preference number: 4 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQPCCCA*CRPPRG
Trigger: CCCCCGAGGTGGTCTGCACCAAGCGCAGCAACACGG...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCCGGTGGGGTTGGAGTTaGCCACGGGCCCCGCCACGT +
Preference number: 4 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFRWGWS*PRAPPR
Trigger: ACGTGGCGGGGCCCGTGGCCAACTCCAACCCCACCG...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp CTGAAGAGTGGGATGCAAGGAGGCCGGTCAGATCCTTaGCGATCTGATTGGCTAACAGGCAGAAGGGGCGGG +
Preference number: 4 (lower is better)
Translates to: LKSGMQGGRSDP*RSDWLTGRRGG
Trigger: CCCGCCCCTTCTGCCTGTTAGCCAATCAGATCGCAAAGGATCTGACCGGCCTCCTTGCATCCCACTCTTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp ATACAGATATCACATAGACCTGGACCCCGGGAGAGGTGGGTCAGGCCCAGTCAACTCCTCCCTTACCGATaGTCAGTCCTGCCGTGCTGT +
Preference number: 4 (lower is better)
Translates to: IQISHRPGPRERWVRPSQLLPYR*SVLPCC
Trigger: ACAGCACGGCAGGACTGATCATCGGTAAGGGAGGAG...TTGACTGGGCCTGACCCACCTCTCCCGGGGTCCAGGTCTATGTGATATCTGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GATCGTCAACATACACCAGCTCCCTGGAAGCCGCCAAGCTTCAAATTCGGCAGACCTCTCCCGTGTTGCTaGGCTTGGTGCAGACCACCT +
Preference number: 4 (lower is better)
Translates to: DRQHTPAPWKPPSFKFGRPLPCC*AWCRPP
Trigger: AGGTGGTCTGCACCAAGCGCAGCAACACGGGAGAGG...TCTGCCGAATTTGAAGCTTGGCGGCTTCCAGGGAGCTGGTGTATGTTGACGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCGCGCTCACGGCCTTGTaGACCTGCTCCGGCTCGCCG +
Preference number: 4 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPALTAL*TCSGSP
Trigger: CGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGC...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTGCTCCTGTCTCCTTCTaGAGCTGCACGATGGTCTGG +
Preference number: 4 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQAAPVSF*SCTMVW
Trigger: CCAGACCATCGTGCAGCTCCAGAAGGAGACAGGAGC...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGTCTGCGATAAAGCTGTaGACAGCATTCAAGGCCTCT +
Preference number: 4 (lower is better)
Translates to: CIAPSTWPRAILVLLESRSAIKL*TAFKAS
Trigger: AGAGGCCTTGAATGCTGTCCACAGCTTTATCGCAGA...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp GATCGTCAACATACACCAGCTCCCTGGAAGCCGCCAAGCTTCAAATTCGGCAGACGGCGTAGCTGGGGATaGGCACCTTCAGGAAGTACT +
Preference number: 4 (lower is better)
Translates to: DRQHTPAPWKPPSFKFGRRRSWG*APSGST
Trigger: AGTACTTCCTGAAGGTGCTCATCCCCAGCTACGCCG...TCTGCCGAATTTGAAGCTTGGCGGCTTCCAGGGAGCTGGTGTATGTTGACGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGACACTTTCTGTGGGTTTaGAGCCCTCACCCCCTGCTC +
Preference number: 4 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRHFLWV*SPHPLL
Trigger: GAGCAGGGGGTGAGGGCTTCAAACCCACAGAAAGTG...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GATCGTCAACATACACCAGCTCCCTGGAAGCCGCCAAGCTTCAAATTCGGCAGAGTCTCCTTCTGGAGCTaGACGATGGTCTGGCCACCT +
Preference number: 4 (lower is better)
Translates to: DRQHTPAPWKPPSFKFGRVSFWS*TMVWPP
Trigger: AGGTGGCCAGACCATCGTGCAGCTCCAGAAGGAGAC...TCTGCCGAATTTGAAGCTTGGCGGCTTCCAGGGAGCTGGTGTATGTTGACGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAGCGCATTTCTCGGACCTTTTCTaGGATAAAGCTGTGGACAGC +
Preference number: 4 (lower is better)
Translates to: EGGGGILGTGHCPTPEAHFSDLF*DKAVDS
Trigger: GCTGTCCACAGCTTTATCGCAGAAAAGGTCCGAGAA...ATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp ATACAGATATCACATAGACCTGGACCCCGGGAGAGGTGGGTCAGGCCCAGTCAAACCGATGATCAGTCCTaGCGTGCTGTTGGGGACGAT +
Preference number: 4 (lower is better)
Translates to: IQISHRPGPRERWVRPSQTDDQS*RAVGDD
Trigger: ATCGTCCCCAACAGCACGGCAGGACTGATCATCGGT...TTGACTGGGCCTGACCCACCTCTCCCGGGGTCCAGGTCTATGTGATATCTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCACGGCCTTGTGCACCTaGTCCGGCTCGCCGCTCACG +
Preference number: 4 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPTALCT*SGSPLT
Trigger: CGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGT...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTGCGTCTTGCCCCCTTTaGCCAGGATGGCCCCCACCA +
Preference number: 4 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLASCPL*PGWPPP
Trigger: TGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGC...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTAGCTGCACGATGGTCTaGCCACCTTTGCCGATGATT +
Preference number: 4 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAASCTMV*PPLPMI
Trigger: AATCATCGGCAAAGGTGGCCAGACCATCGTGCAGCT...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GATCGTCAACATACACCAGCTCCCTGGAAGCCGCCAAGCTTCAAATTCGGCAGATCTGGAGCTGCACGATaGTCTGGCCACCTTTGCCGA +
Preference number: 4 (lower is better)
Translates to: DRQHTPAPWKPPSFKFGRSGAAR*SGHLCR
Trigger: TCGGCAAAGGTGGCCAGACCATCGTGCAGCTCCAGA...TCTGCCGAATTTGAAGCTTGGCGGCTTCCAGGGAGCTGGTGTATGTTGACGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AATCATTCATTTTCACTAGCTTCGTCTCCCATTCGTGCCTGTCAAGGCAAGTTCCGGTGGGGTTGGAGTTaGCCACGGGCCCCGCCACGT +
Preference number: 4 (lower is better)
Translates to: NHSFSLASSPIRACQGKFRWGWS*PRAPPR
Trigger: ACGTGGCGGGGCCCGTGGCCAACTCCAACCCCACCG...GAACTTGCCTTGACAGGCACGAATGGGAGACGAAGCTAGTGAAAATGAATGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GTTGGGCTAGCAAAAGAGGGTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGAGCGCCCGTCAGCTCCTaGTACTCCACCAGCGTCTTG +
Preference number: 4 (lower is better)
Translates to: VGLAKEGGVFLSIPSFNGAPVSS*YSTSVL
Trigger: CAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGC...TCCATTGAAACTGGGGATGGAGAGAAAGACTCCACCCTCTTTTGCTAGCCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp TGTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCGGCTTGGTCATCGCTTaGGGGATTTCTCGGACCTTT +
Preference number: 4 (lower is better)
Translates to: CHTGNGPRLQPMGLWKAGGLVIA*GISRTF
Trigger: AAAGGTCCGAGAAATCCCTCAAGCGATGACCAAGCC...GCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGAGGGGTTGAAGGATGTTaGCCACCTCAGGCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRGVEGC*PPQAWS
Trigger: TGACCAAGCCTGAGGTGGTCAACATCCTTCAACCCC...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp AGTGTAGAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAATCGTGGTTTGGGGTTaGAGGATGTTGACCACCTCA +
Preference number: 4 (lower is better)
Translates to: SVEGGGGILGTGHCPTPEIVVWG*RMLTTS
Trigger: TGAGGTGGTCAACATCCTTCAACCCCAAACCACGAT...TTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTCTACACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCGTACCTTCTGCACGATaGCGCTCACGGCCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: QTETAKSLPSDPCPANYCVPSAR*RSRPCA
Trigger: TGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTAC...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp GTTGGGCTAGCAAAAGAGGGTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGACGGCGTAGCTGGGGATaGGCACCTTCAGGAAGTACT +
Preference number: 4 (lower is better)
Translates to: VGLAKEGGVFLSIPSFNGRRSWG*APSGST
Trigger: AGTACTTCCTGAAGGTGCTCATCCCCAGCTACGCCG...TCCATTGAAACTGGGGATGGAGAGAAAGACTCCACCCTCTTTTGCTAGCCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGCCGTTCTGTAGTTCCTaGGTAGAAGTCTTTGGACTT +
Preference number: 4 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGEPFCSS*VEVFGL
Trigger: AAGTCCAAAGACTTCTACCCAGGAACTACAGAACGG...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp TCTCTCGAGATCCTTAACATTTTGGCGGGGCACACCTaGGGTTTCTCCCAAATCGAACCGGGATGTGGACCA +
Preference number: 4 (lower is better)
Translates to: SLEILNILAGHT*GFSQIEPGCGP
Trigger: TGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCCCGCCAAAATGTTAAGGATCTCGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACACACTTTCTGTGGGTTTaGAGCCCTCACCCCCTGCTC +
Preference number: 4 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTHFLWV*SPHPLL
Trigger: GAGCAGGGGGTGAGGGCTTCAAACCCACAGAAAGTG...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTCTTCCTCTCCCGTGTTaGTGCGCTTGGTGCAGACCA +
Preference number: 4 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLLPLPC*CAWCRP
Trigger: TGGTCTGCACCAAGCGCAGCAACACGGGAGAGGAAG...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTTCTTCCTGTACCTTCTaGACGATGGCGCTCACGGCC +
Preference number: 4 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLSSCTF*TMALTA
Trigger: GGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGA...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp CTTCATCCCTATGATGCCACAGGAAGTGACCTCGAGATTCCACAGGAAGTACATGCTCCTGTCTCCTTCTaGAGCTGCACGATGGTCTGG +
Preference number: 4 (lower is better)
Translates to: LHPYDATGSDLEIPQEVHAPVSF*SCTMVW
Trigger: CCAGACCATCGTGCAGCTCCAGAAGGAGACAGGAGC...ATGTACTTCCTGTGGAATCTCGAGGTCACTTCCTGTGGCATCATAGGGATGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AGTGGACACGGGTGTCCAGGAGCTGTCTGTGGGTTCTGTGTATGTGTGGCTGCTCCGTTCTGTAGTTCCTaGGTAGAAGTCTTTGGACTT +
Preference number: 4 (lower is better)
Translates to: SGHGCPGAVCGFCVCVAAPFCSS*VEVFGL
Trigger: AAGTCCAAAGACTTCTACCCAGGAACTACAGAACGG...AGCAGCCACACATACACAGAACCCACAGACAGCTCCTGGACACCCGTGTCCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTTCTGCGATAAAGCTGTaGACAGCATTCAAGGCCTCT +
Preference number: 4 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQASAIKL*TAFKAS
Trigger: AGAGGCCTTGAATGCTGTCCACAGCTTTATCGCAGA...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AATACAGACAAAGGTAGAGACAGGACAGAGAACCGTGGGGGAGGGGCAACCACATGTCGGGGTTCATCGTaGTTTGGGGTTGAAGGATGT +
Preference number: 4 (lower is better)
Translates to: NTDKGRDRTENRGGGATTCRGSS*FGVEGC
Trigger: ACATCCTTCAACCCCAAACCACGATGAACCCCGACA...TGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTGTCTCTACCTTTGTCTGTATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCGTACCTTCTGCACGATaGCGCTCACGGCCTTGTGCA +
Preference number: 4 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPVPSAR*RSRPCA
Trigger: TGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTAC...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp AATCATTCATTTTCACTAGCTTCGTCTCCCATTCGTGCCTGTCAAGGCAAGTTCGCGCCCGTCAGCTCCTaGTACTCCACCAGCGTCTTG +
Preference number: 4 (lower is better)
Translates to: NHSFSLASSPIRACQGKFAPVSS*YSTSVL
Trigger: CAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGC...GAACTTGCCTTGACAGGCACGAATGGGAGACGAAGCTAGTGAAAATGAATGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGATTCTCGGACCTTTTCTaGGATAAAGCTGTGGACAGC +
Preference number: 4 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRFSDLF*DKAVDS
Trigger: GCTGTCCACAGCTTTATCGCAGAAAAGGTCCGAGAA...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACCGATGATCAGTCCTaGCGTGCTGTTGGGGACGAT +
Preference number: 4 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFTDDQS*RAVGDD
Trigger: ATCGTCCCCAACAGCACGGCAGGACTGATCATCGGT...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTAGGCAGCTGCTGCTCTaGGGGTCTTCCTGTACCTTC +
Preference number: 4 (lower is better)
Translates to: GRIQQSILQRLPHPKAILRQLLL*GSSCTF
Trigger: GAAGGTACAGGAAGACCCGCAGAGCAGCAGCTGCCT...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp ATAGAGTGTCTTTATCCCACCTACCCATCCTGGACATaGCTTCACCCCTATTCCTTCCCCTCCTCATGGAGC +
Preference number: 4 (lower is better)
Translates to: IECLYPTYPSWT*LHPYSFPSSWS
Trigger: GCTCCATGAGGAGGGGAAGGAATAGGGGTGAAGCAATGTCCAGGATGGGTAGGTGGGATAAAGACACTCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp GTGGAGTCTTTCTCTCCATCCCCAGTTTCAATGGATTaGCCCAGAGAAAGGCAAAGGGGGTTCTCCTTGGCT +
Preference number: 4 (lower is better)
Translates to: VESFSPSPVSMD*PRERQRGFSLA
Trigger: AGCCAAGGAGAACCCCCTTTGCCTTTCTCTGGGCAAATCCATTGAAACTGGGGATGGAGAGAAAGACTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp ATGAAGAAGGTGAAATTTGGCACTTTCGAACCCCTCTaGTCATGCTTTGAGGTCCTTCCCCAGCAGCCACCC +
Preference number: 4 (lower is better)
Translates to: MKKVKFGTFEPL*SCFEVLPQQPP
Trigger: GGGTGGCTGCTGGGGAAGGACCTCAAAGCATGACAAGAGGGGTTCGAAAGTGCCAAATTTCACCTTCTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp TTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTTTaGAGCCAGCCTCCAACAGAGGAAGCAGAGGAGAGA +
Preference number: 4 (lower is better)
Translates to: FSKDCPIPKPFF*SQPPTEEAEER
Trigger: TCTCTCCTCTGCTTCCTCTGTTGGAGGCTGGCTCAAAAAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR GCA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCAAGGCCTCTGCCGTaGCCTGTACTAGGCATACCC +
Preference number: 4 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPSRPLP*PVLGIP
Trigger: GGGTATGCCTAGTACAGGGCACGGCAGAGGCCTTGA...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp ATGGATTTGCCCAGAGAAAGGCAAAGGGGGTTCTCCTaGGCTGGTGGAATTTGGGGGAGAGGAATCCAAAAA +
Preference number: 4 (lower is better)
Translates to: MDLPRERQRGFS*AGGIWGRGIQK
Trigger: TTTTTGGATTCCTCTCCCCCAAATTCCACCAGCCAAGGAGAACCCCCTTTGCCTTTCTCTGGGCAAATCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR TCA 90 bp CTTCATCCCTATGATGCCACAGGAAGTGACCTCGAGATTCCACAGGAAGTACATATCGTGGTTTGGGGTTaGAGGATGTTGACCACCTCA +
Preference number: 4 (lower is better)
Translates to: LHPYDATGSDLEIPQEVHIVVWG*RMLTTS
Trigger: TGAGGTGGTCAACATCCTTCAACCCCAAACCACGAT...ATGTACTTCCTGTGGAATCTCGAGGTCACTTCCTGTGGCATCATAGGGATGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp GGATCCAATTTAGCTCAGCATCCTAAAGTGTTTTCTTTGCCTCTTAAGGCCCCCAGCTGCACGATGGTCTaGCCACCTTTGCCGATGATT +
Preference number: 4 (lower is better)
Translates to: GSNLAQHPKVFSLPLKAPSCTMV*PPLPMI
Trigger: AATCATCGGCAAAGGTGGCCAGACCATCGTGCAGCT...GGGGGCCTTAAGAGGCAAAGAAAACACTTTAGGATGCTGAGCTAAATTGGATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CCA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTTGTCGGGGTTCATCGTaGTTTGGGGTTGAAGGATGT +
Preference number: 4 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLCRGSS*FGVEGC
Trigger: ACATCCTTCAACCCCAAACCACGATGAACCCCGACA...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp GAAACACTTACTTTCTTTGGCCATGCTTACTCTCATTaGTTCACCCAAATCAGAGAACACACCCCTCCCTCC +
Preference number: 4 (lower is better)
Translates to: ETLTFFGHAYSH*FTQIREHTPPS
Trigger: GGAGGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAAGTAAGTGTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
3UTR CAA 72 bp GGATGGACAAGTTCAGCCTTGAAACACTTACTTTCTTaGGCCATGCTTACTCTCATTTGTTCACCCAAATCA +
Preference number: 4 (lower is better)
Translates to: GWTSSALKHLLS*AMLTLICSPKS
Trigger: TGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAAGTAAGTGTTTCAAGGCTGAACTTGTCCATCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp GGACGCCAGGAGGTTGGCTGCTGCGGCGGCGGCGGGGTTGGCGCCTaGGGCTACGGCGGCCAGGACGCCGGAGGCGGCGGCCGAGTTGAG +
Preference number: 5 (lower is better)
Translates to: GRQEVGCCGGGGVGA*GYGGQDAGGGGRVE
Trigger: CTCAACTCGGCCGCCGCCTCCGGCGTCCTGGCCGCCGTAGCCGCAGGCGCCAACCCCGCCGCCGCCGCAGCAGCCAACCTCCTGGCGTCC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 90 bp TGGCCCCCACCAGGTTCTCGGGCACCGCGATCTCCACCAGCTCCTTaGCGCTCTCGGCCGCCAGCTTCTCGGCCGTCAGGAAGCCGCCGG +
Preference number: 5 (lower is better)
Translates to: WPPPGSRAPRSPPAP*RSRPPASRPSGSRR
Trigger: CCGGCGGCTTCCTGACGGCCGAGAAGCTGGCGGCCGAGAGCGCCAAGGAGCTGGTGGAGATCGCGGTGCCCGAGAACCTGGTGGGGGCCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp GCGCGCCCGTCAGCTCCTGGTACTCCACCAGCGTCTTGCCCCCTTTaGCCAGGATGGCCCCCACCAGGTTCTCGGGCACCGCGATCTCCA +
Preference number: 5 (lower is better)
Translates to: ARPSAPGTPPASCPL*PGWPPPGSRAPRSP
Trigger: TGGAGATCGCGGTGCCCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGCGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp TCTGGATGCGCGCGCCCGTCAGCTCCTGGTACTCCACCAGCGTCTTaGCCCCTTTGCCCAGGATGGCCCCCACCAGGTTCTCGGGCACCG +
Preference number: 5 (lower is better)
Translates to: SGCARPSAPGTPPAS*PLCPGWPPPGSRAP
Trigger: CGGTGCCCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGCGCGCATCCAGA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 90 bp CGCCGGTTCCGCGTGCCGGGCAGGAACTCGCCCTTCTTGGAGATCTaGATGCGCGCGCCCGTCAGCTCCTGGTACTCCACCAGCGTCTTG +
Preference number: 5 (lower is better)
Translates to: RRFRVPGRNSPFLEI*MRAPVSSWYSTSVL
Trigger: CAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCCTGCCCGGCACGCGGAACCGGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp TGCGGGTCTTCCTGTACCTTCTGCACGATGGCGCTCACGGCCTTGTaGACCTGCTCCGGCTCGCCGCTCACGGTCACCACGCGCTCTTGC +
Preference number: 5 (lower is better)
Translates to: CGSSCTFCTMALTAL*TCSGSPLTVTTRSC
Trigger: GCAAGAGCGCGTGGTGACCGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGACCCGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp ACCACGCGCTCTTGCAGGTTGATGCCCTCGGGCTTCTGCGACAGCTaGACCCACGCGCCGGACTGTTCCATCACCGCCTTCACGGTCGCT +
Preference number: 5 (lower is better)
Translates to: TTRSCRLMPSGFCDS*THAPDCSITAFTVA
Trigger: AGCGACCGTGAAGGCGGTGATGGAACAGTCCGGCGCGTGGGTGCAGCTGTCGCAGAAGCCCGAGGGCATCAACCTGCAAGAGCGCGTGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 90 bp TCAGCTCCTGGTACTCCACCAGCGTCTTGCCCCCTTTGCCCAGGATaGCCCCCACCAGGTTCTCGGGCACCGCGATCTCCACCAGCTCCT +
Preference number: 5 (lower is better)
Translates to: SAPGTPPASCPLCPG*PPPGSRAPRSPPAP
Trigger: AGGAGCTGGTGGAGATCGCGGTGCCCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACCAGGAGCTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATAATGGCGCTCACGGCCTaGTGCACCTGCTCCGGCTCG +
Preference number: 5 (lower is better)
Translates to: SLLPVGGPVHPSQLSELIMALTA*CTCSGS
Trigger: CGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCAT...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGATCTCCACCAGCTCCTaGGCGCTCTCGGCCGCCAGC +
Preference number: 5 (lower is better)
Translates to: CIAPSTWPRAILVLLESRISTSS*ALSAAS
Trigger: GCTGGCGGCCGAGAGCGCCAAGGAGCTGGTGGAGAT...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp TCTTCCTGTACCTTCTGCACGATGGCGCTCACGGCCTTGTGCACCTaGTCCGGCTCGCCGCTCACGGTCACCACGCGCTCTTGCAGGTTG +
Preference number: 5 (lower is better)
Translates to: SSCTFCTMALTALCT*SGSPLTVTTRSCRL
Trigger: CAACCTGCAAGAGCGCGTGGTGACCGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp CTGATGTTGAGGCAGCTGCTGCTCTGCGGGTCTTCCTGTACCTTCTaGACGATGGCGCTCACGGCCTTGTGCACCTGCTCCGGCTCGCCG +
Preference number: 5 (lower is better)
Translates to: LMLRQLLLCGSSCTF*TMALTALCTCSGSP
Trigger: CGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGACCCGCAGAGCAGCAGCTGCCTCAACATCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GAGGGAGGAGGGGGAATCTTAGGGACTGGCCACTGTCCAACACCGGAAGCGCATCCCGTGTTGCTGCGCTaGGTGCAGACCACCTCGGGG +
Preference number: 5 (lower is better)
Translates to: EGGGGILGTGHCPTPEAHPVLLR*VQTTSG
Trigger: CCCCGAGGTGGTCTGCACCAAGCGCAGCAACACGGG...ATGCGCTTCCGGTGTTGGACAGTGGCCAGTCCCTAAGATTCCCCCTCCTCCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TGCATCGCTCCAAGCACCTGGCCCCGGGCTATTCTGGTGCTACTGGAGTCGAGGGGTCACCACGCGCTCTaGCAGGTTGATGCCCTCGGG +
Preference number: 5 (lower is better)
Translates to: CIAPSTWPRAILVLLESRGHHAL*QVDALG
Trigger: CCCGAGGGCATCAACCTGCAAGAGCGCGTGGTGACC...CCTCGACTCCAGTAGCACCAGAATAGCCCGGGGCCAGGTGCTTGGAGCGATGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GGGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGTCTCGAGGGGTCTCTaGCGGGAATCCGGGGCCTCG +
Preference number: 5 (lower is better)
Translates to: GHTLGFSQIEPGCGPCLQVSRGL*RESGAS
Trigger: CGAGGCCCCGGATTCCCGCAAGAGACCCCTCGAGAC...CTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TCCCTCCTCCCGGTCGGAGGACCTGTGCACCCCAGCCAGCTGTCCGAGTTAATACTGGCTGATGAGGTATaGAGCGGCTTGCGTGGCCGC +
Preference number: 5 (lower is better)
Translates to: SLLPVGGPVHPSQLSELILADEV*SGLRGR
Trigger: GCGGCCACGCAAGCCGCTCAATACCTCATCAGCCAG...TATTAACTCGGACAGCTGGCTGGGGTGCACAGGTCCTCCGACCGGGAGGAGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAACCGGTGGGGTTGGAGTaGGCCACGGGCCCCGCCACG +
Preference number: 5 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQPVGLE*ATGPAT
Trigger: CGTGGCGGGGCCCGTGGCCAACTCCAACCCCACCGG...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GGCACACCTTGGGTTTCTCCCAAATCGAACCGGGATGTGGACCATGCCTCCAGGCCTTCCTCTCCCGTGTaGCTGCGCTTGGTGCAGACC +
Preference number: 5 (lower is better)
Translates to: GTPWVSPKSNRDVDHASRPSSPV*LRLVQT
Trigger: GGTCTGCACCAAGCGCAGCAACACGGGAGAGGAAGG...CCTGGAGGCATGGTCCACATCCCGGTTCGATTTGGGAGAAACCCAAGGTGTGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp CAGACAGAGACTGCAAAATCCCTGCCTTCCGATCCCTGCCCTGCTAATTATTGCGAGGCGGCGGCCGAGTaGAGGCCCAGGCTGAGCGAG +
Preference number: 5 (lower is better)
Translates to: QTETAKSLPSDPCPANYCEAAAE*RPRLSE
Trigger: CTCGCTCAGCCTGGGCCTCAACTCGGCCGCCGCCTC...GCAATAATTAGCAGGGCAGGGATCGGAAGGCAGGGATTTTGCAGTCTCTGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp AATACAGACAAAGGTAGAGACAGGACAGAGAACCGTGGGGGAGGGGCAACCACAGAGGTATTGAGCGGCTaGCGTGGCCGCGGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: NTDKGRDRTENRGGGATTEVLSG*RGRGAA
Trigger: GGCAGCCCCGCGGCCACGCAAGCCGCTCAATACCTC...TGTGGTTGCCCCTCCCCCACGGTTCTCTGTCCTGTCTCTACCTTTGTCTGTATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGACCCGTGTTGCTGCGCTaGGTGCAGACCACCTCGGGG +
Preference number: 5 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRPVLLR*VQTTSG
Trigger: CCCCGAGGTGGTCTGCACCAAGCGCAGCAACACGGG...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp AGGGTACAATGCGGGTGGGGAGGTGTGCCACTCCTCACTCACCAACATGGTGAGTTGGGGACGATGAGCTaGGCCTGCTTGGCTCTGTCG +
Preference number: 5 (lower is better)
Translates to: RVQCGWGGVPLLTHQHGELGTMS*ACLALS
Trigger: CGACAGAGCCAAGCAGGCCAAGCTCATCGTCCCCAA...CTCACCATGTTGGTGAGTGAGGAGTGGCACACCTCCCCACCCGCATTGTACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCCCGGTGGGGTTGGAGTaGGCCACGGGCCCCGCCACG +
Preference number: 5 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPPVGLE*ATGPAT
Trigger: CGTGGCGGGGCCCGTGGCCAACTCCAACCCCACCGG...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GTATGTGTGGCTGCTGGTGACCATGGTTCCCAGGACTGGATATTGGATGGACAAATCTCCACCAGCTCCTaGGCGCTCTCGGCCGCCAGC +
Preference number: 5 (lower is better)
Translates to: VCVAAGDHGSQDWILDGQISTSS*ALSAAS
Trigger: GCTGGCGGCCGAGAGCGCCAAGGAGCTGGTGGAGAT...TTGTCCATCCAATATCCAGTCCTGGGAACCATGGTCACCAGCAGCCACACATAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCTAGGAACTCGCCCTTCTaGGAGATCTGGATGCGCGCG +
Preference number: 5 (lower is better)
Translates to: VTQGMDPDSSQWAYGKQARNSPF*EIWMRA
Trigger: CGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCCT...AGCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp AGAGGAAGTGGGCGGCGGCGCTGGTCAAAGAGGATGGAAGGAAATCAGTTAAGACTGGCTGATGAGGTATaGAGCGGCTTGCGTGGCCGC +
Preference number: 5 (lower is better)
Translates to: RGSGRRRWSKRMEGNQLRLADEV*SGLRGR
Trigger: GCGGCCACGCAAGCCGCTCAATACCTCATCAGCCAG...TCTTAACTGATTTCCTTCCATCCTCTTTGACCAGCGCCGCCGCCCACTTCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TGTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCATGAGCTTGGCCTGCTaGGCTCTGTCGGGGTTCATC +
Preference number: 5 (lower is better)
Translates to: CHTGNGPRLQPMGLWKAGMSLAC*ALSGFI
Trigger: GATGAACCCCGACAGAGCCAAGCAGGCCAAGCTCAT...GCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCGAGGCGGCGGCCGAGTaGAGGCCCAGGCTGAGCGAG +
Preference number: 5 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPEAAAE*RPRLSE
Trigger: CTCGCTCAGCCTGGGCCTCAACTCGGCCGCCGCCTC...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GATCGTCAACATACACCAGCTCCCTGGAAGCCGCCAAGCTTCAAATTCGGCAGATACTCCACCAGCGTCTaGCCCCCTTTGCCCAGGATG +
Preference number: 5 (lower is better)
Translates to: DRQHTPAPWKPPSFKFGRYSTSV*PPLPRM
Trigger: CATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTA...TCTGCCGAATTTGAAGCTTGGCGGCTTCCAGGGAGCTGGTGTATGTTGACGATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTGAGGTATTGAGCGGCTaGCGTGGCCGCGGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: GRIQQSILQRLPHPKAILEVLSG*RGRGAA
Trigger: GGCAGCCCCGCGGCCACGCAAGCCGCTCAATACCTC...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS TCA 90 bp GCTTGGCTCTGTCGGGGTTCATCGTGGTTTGGGGTTGAAGGATGTTaGCCACCTCAGGCTTGGTCATCGCTTGAGGGATTTCTCGGACCT +
Preference number: 5 (lower is better)
Translates to: AWLCRGSSWFGVEGC*PPQAWSSLEGFLGP
Trigger: AGGTCCGAGAAATCCCTCAAGCGATGACCAAGCCTGAGGTGGTCAACATCCTTCAACCCCAAACCACGATGAACCCCGACAGAGCCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 90 bp CACCTCAGGCTTGGTCATCGCTTGAGGGATTTCTCGGACCTTTTCTaGGATAAAGCTGTGGACAGCATTCAAGGCCTCTGCCGTGCCCTG +
Preference number: 5 (lower is better)
Translates to: HLRLGHRLRDFSDLF*DKAVDSIQGLCRAL
Trigger: CAGGGCACGGCAGAGGCCTTGAATGCTGTCCACAGCTTTATCGCAGAAAAGGTCCGAGAAATCCCTCAAGCGATGACCAAGCCTGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTGTCTCGAGGGGTCTCTaGCGGGAATCCGGGGCCTCG +
Preference number: 5 (lower is better)
Translates to: GRIQQSILQRLPHPKAILVSRGL*RESGAS
Trigger: CGAGGCCCCGGATTCCCGCAAGAGACCCCTCGAGAC...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp GGAAGAATTCAGCAGTCAATTCTCCAAAGACTGCCCCATCCCAAAGCCATTCTTATGGCGCTCACGGCCTaGTGCACCTGCTCCGGCTCG +
Preference number: 5 (lower is better)
Translates to: GRIQQSILQRLPHPKAILMALTA*CTCSGS
Trigger: CGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCAT...AAGAATGGCTTTGGGATGGGGCAGTCTTTGGAGAATTGACTGCTGAATTCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TGTCACACAGGGAATGGACCCAGACTCCAGCCAATGGGCTTATGGAAAGCAGGCCATCGTGGTTTGGGGTaGAAGGATGTTGACCACCTC +
Preference number: 5 (lower is better)
Translates to: CHTGNGPRLQPMGLWKAGHRGLG*KDVDHL
Trigger: GAGGTGGTCAACATCCTTCAACCCCAAACCACGATG...GCCTGCTTTCCATAAGCCCATTGGCTGGAGTCTGGGTCCATTCCCTGTGTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCACGCGCTCTTGCAGGTaGATGCCCTCGGGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPTRSCR*MPSGFC
Trigger: GCAGAAGCCCGAGGGCATCAACCTGCAAGAGCGCGT...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACAACGCGCTCTTGCAGGTaGATGCCCTCGGGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTTRSCR*MPSGFC
Trigger: GCAGAAGCCCGAGGGCATCAACCTGCAAGAGCGCGT...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCTTGGGGACGATGAGCTaGGCCTGCTTGGCTCTGTCG +
Preference number: 5 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPLGTMS*ACLALS
Trigger: CGACAGAGCCAAGCAGGCCAAGCTCATCGTCCCCAA...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCGGTCACCACGCGCTCTaGCAGGTTGATGCCCTCGGG +
Preference number: 5 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPGHHAL*QVDALG
Trigger: CCCGAGGGCATCAACCTGCAAGAGCGCGTGGTGACC...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCACATACTCCACCAGCGTCTaGCCCCCTTTGCCCAGGATG +
Preference number: 5 (lower is better)
Translates to: FSAPPRFFRKLGERTHFTYSTSV*PPLPRM
Trigger: CATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTA...TGTGAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp CTTCATCCCTATGATGCCACAGGAAGTGACCTCGAGATTCCACAGGAAGTACATAGGAACTCGCCCTTCTaGGAGATCTGGATGCGCGCG +
Preference number: 5 (lower is better)
Translates to: LHPYDATGSDLEIPQEVHRNSPF*EIWMRA
Trigger: CGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCCT...ATGTACTTCCTGTGGAATCTCGAGGTCACTTCCTGTGGCATCATAGGGATGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCATGAGCTTGGCCTGCTaGGCTCTGTCGGGGTTCATC +
Preference number: 5 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFMSLAC*ALSGFI
Trigger: GATGAACCCCGACAGAGCCAAGCAGGCCAAGCTCAT...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp CAATTCTCAGCTCCACCAAGGTTCTTCAGAAAGCTCGGAGAACGAACCCATTTCCCACTTTCTGTGGGTTaGAAGCCCTCACCCCCTGCT +
Preference number: 5 (lower is better)
Translates to: QFSAPPRFFRKLGERTHFPLSVG*KPSPPA
Trigger: AGCAGGGGGTGAGGGCTTCAAACCCACAGAAAGTGG...GAAATGGGTTCGTTCTCCGAGCTTTCTGAAGAACCTTGGTGGAGCTGAGAATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp CTTCATCCCTATGATGCCACAGGAAGTGACCTCGAGATTCCACAGGAAGTACATCCACTTTCTGTGGGTTaGAAGCCCTCACCCCCTGCT +
Preference number: 5 (lower is better)
Translates to: LHPYDATGSDLEIPQEVHPLSVG*KPSPPA
Trigger: AGCAGGGGGTGAGGGCTTCAAACCCACAGAAAGTGG...ATGTACTTCCTGTGGAATCTCGAGGTCACTTCCTGTGGCATCATAGGGATGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp CATAATTCCCACCTCCAAGTCCAGTACAGACAGAGACTGCAAAATCCCTGCCTTAGGCTTGGTCATCGCTaGAGGGATTTCTCGGACCTT +
Preference number: 5 (lower is better)
Translates to: HNSHLQVQYRQRLQNPCLRLGHR*RDFSDL
Trigger: AAGGTCCGAGAAATCCCTCAAGCGATGACCAAGCCT...AAGGCAGGGATTTTGCAGTCTCTGTCTGTACTGGACTTGGAGGTGGGAATTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp CTTCATCCCTATGATGCCACAGGAAGTGACCTCGAGATTCCACAGGAAGTACATGGGGTTCATCGTGGTTaGGGGTTGAAGGATGTTGAC +
Preference number: 5 (lower is better)
Translates to: LHPYDATGSDLEIPQEVHGVHRG*GLKDVD
Trigger: GTCAACATCCTTCAACCCCAAACCACGATGAACCCC...ATGTACTTCCTGTGGAATCTCGAGGTCACTTCCTGTGGCATCATAGGGATGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCTCCCGGGGTTCATCGTGGTTaGGGGTTGAAGGATGTTGAC +
Preference number: 5 (lower is better)
Translates to: FGHAYSHLFTQIREHTPPGVHRG*GLKDVD
Trigger: GTCAACATCCTTCAACCCCAAACCACGATGAACCCC...GGGAGGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp TTTCTTTGGCCATGCTTACTCTCATTTGTTCACCCAAATCAGAGAACACACCCCAGGCTTGGTCATCGCTaGAGGGATTTCTCGGACCTT +
Preference number: 5 (lower is better)
Translates to: FLWPCLLSFVHPNQRTHPRLGHR*RDFSDL
Trigger: AAGGTCCGAGAAATCCCTCAAGCGATGACCAAGCCT...GGGGTGTGTTCTCTGATTTGGGTGAACAAATGAGAGTAAGCATGGCCAAAGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS-3UTR CAA 90 bp AATCATTCATTTTCACTAGCTTCGTCTCCCATTCGTGCCTGTCAAGGCAAGTTCCATCGTGGTTTGGGGTaGAAGGATGTTGACCACCTC +
Preference number: 5 (lower is better)
Translates to: NHSFSLASSPIRACQGKFHRGLG*KDVDHL
Trigger: GAGGTGGTCAACATCCTTCAACCCCAAACCACGATG...GAACTTGCCTTGACAGGCACGAATGGGAGACGAAGCTAGTGAAAATGAATGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 72 bp CGTCGGCCGGGCTGGCGTAGGGCGAGCCGGTGGGGTTaGAGTTGGCCACGGGCCCCGCCACGTTGGCGTAGC +
Preference number: 6 (lower is better)
Translates to: RRPGWRRASRWG*SWPRAPPRWRS
Trigger: GCTACGCCAACGTGGCGGGGCCCGTGGCCAACTCCAACCCCACCGGCTCGCCCTACGCCAGCCCGGCCGACG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 72 bp GGAGCACGTCGGCCGGGCTGGCGTAGGGCGAGCCGGTaGGGTTGGAGTTGGCCACGGGCCCCGCCACGTTGG +
Preference number: 6 (lower is better)
Translates to: GARRPGWRRASR*GWSWPRAPPRW
Trigger: CCAACGTGGCGGGGCCCGTGGCCAACTCCAACCCCACCGGCTCGCCCTACGCCAGCCCGGCCGACGTGCTCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 90 bp ATGGCCCCCACCAGGTTCTCGGGCACCGCGATCTCCACCAGCTCCTaGGCGCTCTCGGCCGCCAGCTTCTCGGCCGTCAGGAAGCCGCCG +
Preference number: 6 (lower is better)
Translates to: MAPTRFSGTAISTSS*ALSAASFSAVRKPP
Trigger: CGGCGGCTTCCTGACGGCCGAGAAGCTGGCGGCCGAGAGCGCCAAGGAGCTGGTGGAGATCGCGGTGCCCGAGAACCTGGTGGGGGCCAT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp CGCCGGTTCCGCGTGCCGGGCAGGAACTCGCCCTTCTaGGAGATCTGGATGCGCGCGCCCGTCAGCTCCTGG +
Preference number: 6 (lower is better)
Translates to: RRFRVPGRNSPF*EIWMRAPVSSW
Trigger: CCAGGAGCTGACGGGCGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCCTGCCCGGCACGCGGAACCGGCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 90 bp CGCGCGCCCGTCAGCTCCTGGTACTCCACCAGCGTCTTGCCCCCTTaGCCCAGGATGGCCCCCACCAGGTTCTCGGGCACCGCGATCTCC +
Preference number: 6 (lower is better)
Translates to: RAPVSSWYSTSVLPP*PRMAPTRFSGTAIS
Trigger: GGAGATCGCGGTGCCCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGCGCG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 72 bp GCCGGTTCCGCGTGCCGGGCAGGAACTCGCCCTTCTTaGAGATCTGGATGCGCGCGCCCGTCAGCTCCTGGT +
Preference number: 6 (lower is better)
Translates to: AGSACRAGTRPS*RSGCARPSAPG
Trigger: ACCAGGAGCTGACGGGCGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCCTGCCCGGCACGCGGAACCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp ACCAGGTTCTCGGGCACCGCGATCTCCACCAGCTCCTaGGCGCTCTCGGCCGCCAGCTTCTCGGCCGTCAGG +
Preference number: 6 (lower is better)
Translates to: TRFSGTAISTSS*ALSAASFSAVR
Trigger: CCTGACGGCCGAGAAGCTGGCGGCCGAGAGCGCCAAGGAGCTGGTGGAGATCGCGGTGCCCGAGAACCTGGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp CGCGCGCCCGTCAGCTCCTGGTACTCCACCAGCGTCTaGCCCCCTTTGCCCAGGATGGCCCCCACCAGGTTC +
Preference number: 6 (lower is better)
Translates to: RAPVSSWYSTSV*PPLPRMAPTRF
Trigger: GAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGCGCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 90 bp ATCTGGATGCGCGCGCCCGTCAGCTCCTGGTACTCCACCAGCGTCTaGCCCCCTTTGCCCAGGATGGCCCCCACCAGGTTCTCGGGCACC +
Preference number: 6 (lower is better)
Translates to: IWMRAPVSSWYSTSV*PPLPRMAPTRFSGT
Trigger: GGTGCCCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGCGCGCATCCAGAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 90 bp ATGGTGACCCGCCGGTTCCGCGTGCCGGGCAGGAACTCGCCCTTCTaGGAGATCTGGATGCGCGCGCCCGTCAGCTCCTGGTACTCCACC +
Preference number: 6 (lower is better)
Translates to: MVTRRFRVPGRNSPF*EIWMRAPVSSWYST
Trigger: GGTGGAGTACCAGGAGCTGACGGGCGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCCTGCCCGGCACGCGGAACCGGCGGGTCACCAT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 72 bp TGCTCCGGCTCGCCGCTCACGGTCACCACGCGCTCTTaGAGGTTGATGCCCTCGGGCTTCTGCGACAGCTGC +
Preference number: 6 (lower is better)
Translates to: CSGSPLTVTTRS*RLMPSGFCDSC
Trigger: GCAGCTGTCGCAGAAGCCCGAGGGCATCAACCTGCAAGAGCGCGTGGTGACCGTGAGCGGCGAGCCGGAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 72 bp ACCTTCTGCACGATGGCGCTCACGGCCTTGTGCACCTaGTCCGGCTCGCCGCTCACGGTCACCACGCGCTCT +
Preference number: 6 (lower is better)
Translates to: TFCTMALTALCT*SGSPLTVTTRS
Trigger: AGAGCGCGTGGTGACCGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGT
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 72 bp GCGCGCCCGTCAGCTCCTGGTACTCCACCAGCGTCTTaGCCCCTTTGCCCAGGATGGCCCCCACCAGGTTCT +
Preference number: 6 (lower is better)
Translates to: ARPSAPGTPPAS*PLCPGWPPPGS
Trigger: AGAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACCAGGAGCTGACGGGCGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 72 bp CGCGTGCCGGGCAGGAACTCGCCCTTCTTGGAGATCTaGATGCGCGCGCCCGTCAGCTCCTGGTACTCCACC +
Preference number: 6 (lower is better)
Translates to: RVPGRNSPFLEI*MRAPVSSWYST
Trigger: GGTGGAGTACCAGGAGCTGACGGGCGCGCGCATCCAGATCTCCAAGAAGGGCGAGTTCCTGCCCGGCACGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp CTGCTCCGGCTCGCCGCTCACGGTCACCACGCGCTCTaGCAGGTTGATGCCCTCGGGCTTCTGCGACAGCTG +
Preference number: 6 (lower is better)
Translates to: LLRLAAHGHHAL*QVDALGLLRQL
Trigger: CAGCTGTCGCAGAAGCCCGAGGGCATCAACCTGCAAGAGCGCGTGGTGACCGTGAGCGGCGAGCCGGAGCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp GTAGGTGACCCGCTGGCTGATGAGGTATTGAGCGGCTaGCGTGGCCGCGGGGCTGCCCGTGATGGTGACCCG +
Preference number: 6 (lower is better)
Translates to: VGDPLADEVLSG*RGRGAARDGDP
Trigger: CGGGTCACCATCACGGGCAGCCCCGCGGCCACGCAAGCCGCTCAATACCTCATCAGCCAGCGGGTCACCTAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 90 bp CTCTGCGGGTCTTCCTGTACCTTCTGCACGATGGCGCTCACGGCCTaGTGCACCTGCTCCGGCTCGCCGCTCACGGTCACCACGCGCTCT +
Preference number: 6 (lower is better)
Translates to: LCGSSCTFCTMALTA*CTCSGSPLTVTTRS
Trigger: AGAGCGCGTGGTGACCGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGACCCGCAGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 72 bp TCCTGTACCTTCTGCACGATGGCGCTCACGGCCTTGTaGACCTGCTCCGGCTCGCCGCTCACGGTCACCACG +
Preference number: 6 (lower is better)
Translates to: SCTFCTMALTAL*TCSGSPLTVTT
Trigger: CGTGGTGACCGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGA
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 72 bp GGTACTCCACCAGCGTCTTGCCCCCTTTGCCCAGGATaGCCCCCACCAGGTTCTCGGGCACCGCGATCTCCA +
Preference number: 6 (lower is better)
Translates to: GTPPASCPLCPG*PPPGSRAPRSP
Trigger: TGGAGATCGCGGTGCCCGAGAACCTGGTGGGGGCCATCCTGGGCAAAGGGGGCAAGACGCTGGTGGAGTACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CCA 72 bp TGCTGCTCTGCGGGTCTTCCTGTACCTTCTGCACGATaGCGCTCACGGCCTTGTGCACCTGCTCCGGCTCGC +
Preference number: 6 (lower is better)
Translates to: CCSAGLPVPSAR*RSRPCAPAPAR
Trigger: GCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGACCCGCAGAGCAGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp TCTTCCTGTACCTTCTGCACGATGGCGCTCACGGCCTaGTGCACCTGCTCCGGCTCGCCGCTCACGGTCACC +
Preference number: 6 (lower is better)
Translates to: SSCTFCTMALTA*CTCSGSPLTVT
Trigger: GGTGACCGTGAGCGGCGAGCCGGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGA
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 72 bp TCTTGCAGGTTGATGCCCTCGGGCTTCTGCGACAGCTaGACCCACGCGCCGGACTGTTCCATCACCGCCTTC +
Preference number: 6 (lower is better)
Translates to: SCRLMPSGFCDS*THAPDCSITAF
Trigger: GAAGGCGGTGATGGAACAGTCCGGCGCGTGGGTGCAGCTGTCGCAGAAGCCCGAGGGCATCAACCTGCAAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 72 bp AGGCAGCTGCTGCTCTGCGGGTCTTCCTGTACCTTCTaGACGATGGCGCTCACGGCCTTGTGCACCTGCTCC +
Preference number: 6 (lower is better)
Translates to: RQLLLCGSSCTF*TMALTALCTCS
Trigger: GGAGCAGGTGCACAAGGCCGTGAGCGCCATCGTGCAGAAGGTACAGGAAGACCCGCAGAGCAGCAGCTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp GCTCCTCCCTTACCGATGATCAGTCCTGCCGTGCTGTaGGGGACGATGAGCTTGGCCTGCTTGGCTCTGTCG +
Preference number: 6 (lower is better)
Translates to: APPLPMISPAVL*GTMSLACLALS
Trigger: CGACAGAGCCAAGCAGGCCAAGCTCATCGTCCCCAACAGCACGGCAGGACTGATCATCGGTAAGGGAGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 90 bp GAGCTTGGCCTGCTTGGCTCTGTCGGGGTTCATCGTGGTTTGGGGTaGAAGGATGTTGACCACCTCAGGCTTGGTCATCGCTTGAGGGAT +
Preference number: 6 (lower is better)
Translates to: ELGLLGSVGVHRGLG*KDVDHLRLGHRLRD
Trigger: ATCCCTCAAGCGATGACCAAGCCTGAGGTGGTCAACATCCTTCAACCCCAAACCACGATGAACCCCGACAGAGCCAAGCAGGCCAAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 90 bp GACGATGAGCTTGGCCTGCTTGGCTCTGTCGGGGTTCATCGTGGTTaGGGGTTGAAGGATGTTGACCACCTCAGGCTTGGTCATCGCTTG +
Preference number: 6 (lower is better)
Translates to: DDELGLLGSVGVHRG*GLKDVDHLRLGHRL
Trigger: CAAGCGATGACCAAGCCTGAGGTGGTCAACATCCTTCAACCCCAAACCACGATGAACCCCGACAGAGCCAAGCAGGCCAAGCTCATCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp CTGCTTGGCTCTGTCGGGGTTCATCGTGGTTTGGGGTaGAAGGATGTTGACCACCTCAGGCTTGGTCATCGC +
Preference number: 6 (lower is better)
Translates to: LLGSVGVHRGLG*KDVDHLRLGHR
Trigger: GCGATGACCAAGCCTGAGGTGGTCAACATCCTTCAACCCCAAACCACGATGAACCCCGACAGAGCCAAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS CAA 72 bp CTTGGCCTGCTTGGCTCTGTCGGGGTTCATCGTGGTTaGGGGTTGAAGGATGTTGACCACCTCAGGCTTGGT +
Preference number: 6 (lower is better)
Translates to: LGLLGSVGVHRG*GLKDVDHLRLG
Trigger: ACCAAGCCTGAGGTGGTCAACATCCTTCAACCCCAAACCACGATGAACCCCGACAGAGCCAAGCAGGCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS TCA 72 bp TGTCGGGGTTCATCGTGGTTTGGGGTTGAAGGATGTTaGCCACCTCAGGCTTGGTCATCGCTTGAGGGATTT +
Preference number: 6 (lower is better)
Translates to: CRGSSWFGVEGC*PPQAWSSLEGF
Trigger: AAATCCCTCAAGCGATGACCAAGCCTGAGGTGGTCAACATCCTTCAACCCCAAACCACGATGAACCCCGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2
CDS GCA 72 bp CTTGGTCATCGCTTGAGGGATTTCTCGGACCTTTTCTaGGATAAAGCTGTGGACAGCATTCAAGGCCTCTGC +
Preference number: 6 (lower is better)
Translates to: LGHRLRDFSDLF*DKAVDSIQGLC
Trigger: GCAGAGGCCTTGAATGCTGTCCACAGCTTTATCGCAGAAAAGGTCCGAGAAATCCCTCAAGCGATGACCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032571.10
ENSMUST00000220302.2