RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NOVA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021047

Ensembl transcript IDs: ENSMUST00000021438.8, ENSMUST00000219330.2, ENSMUST00000219886.2

Found 207 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CATGAGGAGGTGCTGGGGATGGATGCCCCTATGAGTGGCCTTGAGTaGGCAAACTCAGAGGTTAACAGATGGTGTGTCAAATGGCCTGGA +
Preference number: 1 (lower is better)
Translates to: HEEVLGMDAPMSGLE*ANSEVNRWCVKWPG
Trigger: TCCAGGCCATTTGACACACCATCTGTTAACCTCTGAGTTTGCCCACTCAAGGCCACTCATAGGGGCATCCATCCCCAGCACCTCCTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 90 bp GGCCTTGAGTGGGCAAACTCAGAGGTTAACAGATGGTGTGTCAAATaGCCTGGACAGTTGGCACTCAGGAGAGGTACAGAAGAGGGTGAC +
Preference number: 1 (lower is better)
Translates to: GLEWANSEVNRWCVK*PGQLALRRGTEEGD
Trigger: GTCACCCTCTTCTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACACACCATCTGTTAACCTCTGAGTTTGCCCACTCAAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 90 bp GCCCCTATGAGTGGCCTTGAGTGGGCAAACTCAGAGGTTAACAGATaGTGTGTCAAATGGCCTGGACAGTTGGCACTCAGGAGAGGTACA +
Preference number: 1 (lower is better)
Translates to: APMSGLEWANSEVNR*CVKWPGQLALRRGT
Trigger: TGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACACACCATCTGTTAACCTCTGAGTTTGCCCACTCAAGGCCACTCATAGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 90 bp CAAACTCAGAGGTTAACAGATGGTGTGTCAAATGGCCTGGACAGTTaGCACTCAGGAGAGGTACAGAAGAGGGTGACAGTTGTTGGGTCT +
Preference number: 1 (lower is better)
Translates to: QTQRLTDGVSNGLDS*HSGEVQKRVTVVGS
Trigger: AGACCCAACAACTGTCACCCTCTTCTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACACACCATCTGTTAACCTCTGAGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 90 bp TCTAAGACACATCCTAGTTCGCTTCCTTTCCCTTCTTCCAATGAGTaGGGCCCCAATCTTTGCCTTTCTTCACTGCTGACTCTGAGACAG +
Preference number: 1 (lower is better)
Translates to: SKTHPSSLPFPSSNE*GPNLCLSSLLTLRQ
Trigger: CTGTCTCAGAGTCAGCAGTGAAGAAAGGCAAAGATTGGGGCCCCACTCATTGGAAGAAGGGAAAGGAAGCGAACTAGGATGTGTCTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR TCA 90 bp AGGGTGACAGTTGTTGGGTCTTGGGAACAAAGGCTTACTCTGAAATaGCCTGTCAAAAAGCCTGACAAAGGTAGATCACACTACCTCTCA +
Preference number: 1 (lower is better)
Translates to: RVTVVGSWEQRLTLK*PVKKPDKGRSHYLS
Trigger: TGAGAGGTAGTGTGATCTACCTTTGTCAGGCTTTTTGACAGGTCATTTCAGAGTAAGCCTTTGTTCCCAAGACCCAACAACTGTCACCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR GCA 90 bp ATACTTTTAATCGTGTGTAAAGCACATTTAGGAAGGCCAGGCCTCTaGAGTGAGAAGCCACATGATTCCCTTGCTCTATCGACGAAGAAC +
Preference number: 1 (lower is better)
Translates to: ILLIVCKAHLGRPGL*SEKPHDSLALSTKN
Trigger: GTTCTTCGTCGATAGAGCAAGGGAATCATGTGGCTTCTCACTGCAGAGGCCTGGCCTTCCTAAATGTGCTTTACACACGATTAAAAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR GCA 90 bp GAAGTAGGATTGAAAGTCCTACAGGTAATAGCAAATAACTGGAAGTaGAGACGAAATTGGTCTTCAGTGCAAAGAGGAAGGCAGCCGTTA +
Preference number: 1 (lower is better)
Translates to: EVGLKVLQVIANNWK*RRNWSSVQRGRQPL
Trigger: TAACGGCTGCCTTCCTCTTTGCACTGAAGACCAATTTCGTCTGCACTTCCAGTTATTTGCTATTACCTGTAGGACTTTCAATCCTACTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 90 bp AAAGTCCTACAGGTAATAGCAAATAACTGGAAGTGCAGACGAAATTaGTCTTCAGTGCAAAGAGGAAGGCAGCCGTTAAAAAGTCTAGGT +
Preference number: 1 (lower is better)
Translates to: KVLQVIANNWKCRRN*SSVQRGRQPLKSLG
Trigger: ACCTAGACTTTTTAACGGCTGCCTTCCTCTTTGCACTGAAGACCAATTTCGTCTGCACTTCCAGTTATTTGCTATTACCTGTAGGACTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR TCA 90 bp TATAAAATTTCCAATACACTGTACCACAGTTATGTGTCTAAACAGTaGGGATGTTCATGGAGTAATGACTGTTCTACTGGCCAGGCGATG +
Preference number: 1 (lower is better)
Translates to: YKISNTLYHSYVSKQ*GCSWSNDCSTGQAM
Trigger: CATCGCCTGGCCAGTAGAACAGTCATTACTCCATGAACATCCTCACTGTTTAGACACATAACTGTGGTACAGTGTATTGGAAATTTTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR TCA 90 bp AAAGATTTGCTAATACTGAACAAAACATTTTCAAGACCCGACATTTaGAATGCTTCTAAGACACATCCTAGTTCGCTTCCTTTCCCTTCT +
Preference number: 1 (lower is better)
Translates to: KDLLILNKTFSRPDI*NASKTHPSSLPFPS
Trigger: AGAAGGGAAAGGAAGCGAACTAGGATGTGTCTTAGAAGCATTTCAAATGTCGGGTCTTGAAAATGTTTTGTTCAGTATTAGCAAATCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAGGATGGATGCCCCTATaGGTGGCCTTGAGTGGGCAA +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEGWMPL*VALSGQ
Trigger: TTGCCCACTCAAGGCCACTCATAGGGGCATCCATCC...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACGAAGTAAGACATACATaGCAGTGCTTTGGCCTCACT +
Preference number: 2 (lower is better)
Translates to: ETALAASAMLQELRHGADEVRHT*QCFGLT
Trigger: AGTGAGGCCAAAGCACTGTCATGTATGTCTTACTTC...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAACCCTATGAGTGGCCTTaGGTGGGCAAACTCAGAGGT +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEPYEWP*VGKLRG
Trigger: ACCTCTGAGTTTGCCCACTCAAGGCCACTCATAGGG...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAGTGTGTCAAATGGCCTaGACAGTTGGCACTCAGGAG +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEVCQMA*TVGTQE
Trigger: CTCCTGAGTGCCAACTGTCCAGGCCATTTGACACAC...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCAGTTGCTCAGCCAGATaGTCCAGAGGTAGCCAGCAT +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLSCSAR*SRGSQH
Trigger: ATGCTGGCTACCTCTGGATCATCTGGCTGAGCAACT...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR GCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAATGGGGCCCCAATCTTTaGCTTTCTTCACTGCTGACT +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEWGPNL*LSSLLT
Trigger: AGTCAGCAGTGAAGAAAGGCAAAGATTGGGGCCCCA...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCAATGGCCTGGACAGTTaGCACTCAGGAGAGGTACAG +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLNGLDS*HSGEVQ
Trigger: CTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATT...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAACCTTCTTCCAATGAGTaGGGCCCCAATCTTTGCCTT +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEPSSNE*GPNLCL
Trigger: AAGGCAAAGATTGGGGCCCCACTCATTGGAAGAAGG...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCTCCAGTTTAGGTCACTaGCCCCACCATACTCAACCT +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLSSLGH*PHHTQP
Trigger: AGGTTGAGTATGGTGGGGTCAGTGACCTAAACTGGA...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCTTTCCCTTCTTCCAATaGGTGGGGCCCCAATCTTTG +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLFPFFQ*VGPQSL
Trigger: CAAAGATTGGGGCCCCACTCATTGGAAGAAGGGAAA...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCACAAATGATGAAGAATaGGCCCTGGCCAGCATGCAG +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLTNDEE*ALASMQ
Trigger: CTGCATGCTGGCCAGGGCCCATTCTTCATCATTTGT...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGAGGGTGACAGTTGTTaGGTCTTGGGAACAAAGGCT +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLEGDSC*VLGTKA
Trigger: AGCCTTTGTTCCCAAGACCCAACAACTGTCACCCTC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAATGAGTGGCCTTGAGTaGGCAAACTCAGAGGTTAAC +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEMSGLE*ANSEVN
Trigger: GTTAACCTCTGAGTTTGCCCACTCAAGGCCACTCAT...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAAGGCTTACTCTGAAATaGCCTGTCAAAAAGCCTGAC +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSERLTLK*PVKKPD
Trigger: GTCAGGCTTTTTGACAGGTCATTTCAGAGTAAGCCT...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAATACATGACAGTGCTTTaGCCTCACTCCAGTTTAGGT +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEYMTVL*PHSSLG
Trigger: ACCTAAACTGGAGTGAGGCCAAAGCACTGTCATGTA...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCTTACACGCCTACCTGTaGCAGTCTGAAGCCATACTA +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLLHAYL*QSEAIL
Trigger: TAGTATGGCTTCAGACTGCCACAGGTAGGCGTGTAA...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CAA 90 bp TCAGAGAGAGGCTGGACGAAATTCAGACATGGAGCATCACACTCATaGTTCTTTAATTGGTTGCACAGAAAGGAGCAGCTGGGATGCCAT +
Preference number: 2 (lower is better)
Translates to: SERGWTKFRHGASHS*FFNWLHRKEQLGCH
Trigger: ATGGCATCCCAGCTGCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGAATTTCGTCCAGCCTCTCTCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGGCAATGCTAACCACTaGTTCCACGAGATACACTAT +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLGNANH*FHEIHY
Trigger: ATAGTGTATCTCGTGGAATCAGTGGTTAGCATTGCC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR GCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCGGGCCCTGGCCAGCATaGAGCATTATTTCCATTGTC +
Preference number: 2 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSGPWPA*SIISIV
Trigger: GACAATGGAAATAATGCTGCATGCTGGCCAGGGCCC...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCCATCCTTCTTCCAAATaGGGCAAAGGAGGGGTTAAA +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLHPSSK*GKGGVK
Trigger: TTTAACCCCTCCTTTGCCCCATTTGGAAGAAGGATG...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCACAGTTGTTGGGTCTTaGGAACAAAGGCTTACTCTG +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLTVVGS*EQRLTL
Trigger: CAGAGTAAGCCTTTGTTCCCAAGACCCAACAACTGT...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCCTACCTGTGGCAGTCTaGAGCCATACTAATTTTCTT +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLLPVAV*SHTNFL
Trigger: AAGAAAATTAGTATGGCTTCAGACTGCCACAGGTAG...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAGACGAAATTCAGACATaGAGCATCACACTCATTGTT +
Preference number: 2 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEDEIQT*SITLIV
Trigger: AACAATGAGTGTGATGCTCCATGTCTGAATTTCGTC...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGTATGGGCTCCACAGTaGACTACTGGAATTTTGAAA +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLVWAPQ*TTGILK
Trigger: TTTCAAAATTCCAGTAGTCCACTGTGGAGCCCATAC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCATGAAGAATGGGCCCTaGCCAGCATGCAGCATTATT +
Preference number: 2 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSMKNGP*PACSII
Trigger: AATAATGCTGCATGCTGGCCAGGGCCCATTCTTCAT...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCTATGTGTCTAAACAGTaGGGATGTTCATGGAGTAAT +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLYVSKQ*GCSWSN
Trigger: ATTACTCCATGAACATCCTCACTGTTTAGACACATA...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR GCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGAAAAACTTCACTTCTaGAAAGTACAGTACATCCTT +
Preference number: 2 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLEKLHF*KVQYIL
Trigger: AAGGATGTACTGTACTTTGCAGAAGTGAAGTTTTTC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CAA 90 bp TTCCACAGTTTTCACTTGTTTATATATCTAATGGCAACCCAAGTATaGGCCTCTGCACCACTTTTAATGAGACAATTGCCCTTCCATCGC +
Preference number: 2 (lower is better)
Translates to: FHSFHLFIYLMATQV*ASAPLLMRQLPFHR
Trigger: GCGATGGAAGGGCAATTGTCTCATTAAAAGTGGTGCAGAGGCCAATACTTGGGTTGCCATTAGATATATAAACAAGTGAAAACTGTGGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAGACAGCTCCCAGTGTTaGGGAAAAGATCTTGGATCT +
Preference number: 2 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEDSSQC*GKDLGS
Trigger: AGATCCAAGATCTTTTCCTCAACACTGGGAGCTGTC...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAAGAAAGCTGCAGAACTaGGGTAATTCGTATTCAGCG +
Preference number: 2 (lower is better)
Translates to: WCGNIILKVCYRCDGKLERKLQN*GNSYSA
Trigger: CGCTGAATACGAATTACCTCAGTTCTGCAGCTTTCT...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR TCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAAGGTGGGACTCCATGTaGGAACTTTTGTTGAACTTA +
Preference number: 2 (lower is better)
Translates to: WCGNIILKVCYRCDGKLERWDSM*ELLLNL
Trigger: TAAGTTCAACAAAAGTTCTCACATGGAGTCCCACCT...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CAA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAGTGGGGCCCCAATCTTaGCCTTTCTTCACTGCTGAC +
Preference number: 3 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEVGPQS*PFFTAD
Trigger: GTCAGCAGTGAAGAAAGGCAAAGATTGGGGCCCCAC...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR TCA 72 bp GTGTCACCAGTTTTCCCCACTTTGGATCAGTATAGCTaGACAGCCATCGTTACACGCCTACCTGTGGCAGTC +
Preference number: 3 (lower is better)
Translates to: VSPVFPTLDQYS*TAIVTRLPVAV
Trigger: GACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCAAAGTGGGGAAAACTGGTGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR GCA 72 bp ATCGTGTGTAAAGCACATTTAGGAAGGCCAGGCCTCTaGAGTGAGAAGCCACATGATTCCCTTGCTCTATCG +
Preference number: 3 (lower is better)
Translates to: IVCKAHLGRPGL*SEKPHDSLALS
Trigger: CGATAGAGCAAGGGAATCATGTGGCTTCTCACTGCAGAGGCCTGGCCTTCCTAAATGTGCTTTACACACGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 72 bp AGGTTAACAGATGGTGTGTCAAATGGCCTGGACAGTTaGCACTCAGGAGAGGTACAGAAGAGGGTGACAGTT +
Preference number: 3 (lower is better)
Translates to: RLTDGVSNGLDS*HSGEVQKRVTV
Trigger: AACTGTCACCCTCTTCTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACACACCATCTGTTAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 72 bp TGGGCAAACTCAGAGGTTAACAGATGGTGTGTCAAATaGCCTGGACAGTTGGCACTCAGGAGAGGTACAGAA +
Preference number: 3 (lower is better)
Translates to: WANSEVNRWCVK*PGQLALRRGTE
Trigger: TTCTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACACACCATCTGTTAACCTCTGAGTTTGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 72 bp CATCCTAGTTCGCTTCCTTTCCCTTCTTCCAATGAGTaGGGCCCCAATCTTTGCCTTTCTTCACTGCTGACT +
Preference number: 3 (lower is better)
Translates to: HPSSLPFPSSNE*GPNLCLSSLLT
Trigger: AGTCAGCAGTGAAGAAAGGCAAAGATTGGGGCCCCACTCATTGGAAGAAGGGAAAGGAAGCGAACTAGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CAA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCTCTTTTGTAATTCAGTaGCTCAGCCAGATGATCCAG +
Preference number: 3 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLSFVIQ*LSQMIQ
Trigger: CTGGATCATCTGGCTGAGCAACTGAATTACAAAAGA...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CAA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGGAGCATCACACTCATaGTTCTTTAATTGGTTGCAC +
Preference number: 3 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLGASHS*FFNWLH
Trigger: GTGCAACCAATTAAAGAACAATGAGTGTGATGCTCC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR TCA 72 bp ACTCCTTTACTGCTACCATCTGATGGGAACCTACCATaGAGGAGTACAGGGGAGAGCTACAAATTACTGAGA +
Preference number: 3 (lower is better)
Translates to: TPLLLPSDGNLP*RSTGESYKLLR
Trigger: TCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTTCATGGTAGGTTCCCATCAGATGGTAGCAGTAAAGGAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
3UTR-3UTR CAA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCGACAGTTGTTGGGTCTaGGGAACAAAGGCTTACTCT +
Preference number: 3 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSDSCWV*GTKAYS
Trigger: AGAGTAAGCCTTTGTTCCCAAGACCCAACAACTGTC...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR TCA 72 bp GATACATTTACTGTTTTGGGAGTGGGCTGGGTGAGGTaGAGTAGGATTGAAAGTCCTACAGGTAATAGCAAA +
Preference number: 3 (lower is better)
Translates to: DTFTVLGVGWVR*SRIESPTGNSK
Trigger: TTTGCTATTACCTGTAGGACTTTCAATCCTACTTCACCTCACCCAGCCCACTCCCAAAACAGTAAATGTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CAA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAATACATGACAGTGCTTaGGCCTCACTCCAGTTTAGG +
Preference number: 3 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEIHDSA*ASLQFR
Trigger: CCTAAACTGGAGTGAGGCCAAAGCACTGTCATGTAT...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR-3UTR CAA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCGCAGCATTATTTCCATaGTCTAGTTCAGATGGAGAA +
Preference number: 3 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSAALFP*SSSDGE
Trigger: TTCTCCATCTGAACTAGACAATGGAAATAATGCTGC...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CCA 72 bp GTAGGATTGAAAGTCCTACAGGTAATAGCAAATAACTaGAAGTGCAGACGAAATTGGTCTTCAGTGCAAAGA +
Preference number: 3 (lower is better)
Translates to: VGLKVLQVIANN*KCRRNWSSVQR
Trigger: TCTTTGCACTGAAGACCAATTTCGTCTGCACTTCCAGTTATTTGCTATTACCTGTAGGACTTTCAATCCTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACCGTCTTCGCCCGTGTTaGTCCTCTTGGTGCTGCCGG +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADRLRPC*SSWCCR
Trigger: CCGGCAGCACCAAGAGGACCAACACGGGCGAAGACG...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGGTTGGCACTGGCAGCTaGGGCAGCCAAAGCCCCCGT +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMEVGTGS*GSQSPR
Trigger: ACGGGGGCTTTGGCTGCCGCAGCTGCCAGTGCCAAC...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGCTGCTGCTGCTGGGTTaGCACTGGCAGCTGCGGCAG +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMELLLLG*HWQLRQ
Trigger: CTGCCGCAGCTGCCAGTGCCAACCCAGCAGCAGCAG...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAACGTGCTGCCGCTGGCTaGGGCTTCACTGGCATAGGT +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSERAAAG*GFTGIG
Trigger: ACCTATGCCAGTGAAGCCTCAGCCAGCGGCAGCACG...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAATGTTGGTCCTCTTGGTaGTGCCGGCTTCAGGGGGCG +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSECWSSW*CRLQGA
Trigger: CGCCCCCTGAAGCCGGCAGCACCAAGAGGACCAACA...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAATTCCACCAGCCGTGCTaGCGCTGGCTGAGGCTTCAC +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEFHQPC*RWLRLH
Trigger: GTGAAGCCTCAGCCAGCGGCAGCACGGCTGGTGGAA...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGGCTGCTGCTGCTGCTaGGTTGGCACTGGCAGCTGC +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLGCCCC*VGTGSC
Trigger: GCAGCTGCCAGTGCCAACCCAGCAGCAGCAGCAGCC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACCCACTTTCTGAGGATTaGCAGCCCGAACTCCTTGCT +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADPLSED*QPELLA
Trigger: AGCAAGGAGTTCGGGCTGCCAATCCTCAGAAAGTGG...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CAA 72 bp GGCCAGGCCTCTGCAGTGAGAAGCCACATGATTCCCTaGCTCTATCGACGAAGAACACTGGCATCATCAGGG +
Preference number: 4 (lower is better)
Translates to: GQASAVRSHMIP*LYRRRTLASSG
Trigger: CCCTGATGATGCCAGTGTTCTTCGTCGATAGAGCAAGGGAATCATGTGGCTTCTCACTGCAGAGGCCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACGTTCTCCACTCACAGTaGCAACCCTCTCTTGCAAGT +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADVLHSQ*QPSLAS
Trigger: ACTTGCAAGAGAGGGTTGTCACTGTGAGTGGAGAAC...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACACCCAAGCCCCTGACTaGTCCATTATAGCCTTCACA +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADTQAPD*SIIAFT
Trigger: TGTGAAGGCTATAATGGAGCAGTCAGGGGCTTGGGT...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACCCCGTTGCTGCTGCTTaGCTGAGACCTAAACCTAAT +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADPVAAA*LRPKPN
Trigger: ATTAGGTTTAGGTCTCAGCCAAGCAGCAGCAACGGG...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACCTTCACTGGCATAGGTaGCCAACAAATTGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADLHWHR*PTNWLL
Trigger: CAGCAGCCAATTTGTTGGCCACCTATGCCAGTGAAG...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGTCCCTAGAATGGCACTaGCAGCTAGGGGCGAGGCAG +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMESLEWH*QLGARQ
Trigger: CTGCCTCGCCCCTAGCTGCCAGTGCCATTCTAGGGA...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACTCTGCAATGAATCCATaGACTGCGTTCAGCGCTTCA +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADSAMNP*TAFSAS
Trigger: TGAAGCGCTGAACGCAGTTCATGGATTCATTGCAGA...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCAGCCAAAGCCCCCGTTaGTGCTGCTTGGCTGAGACC +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLSQSPR*CCLAET
Trigger: GGTCTCAGCCAAGCAGCAGCAACGGGGGCTTTGGCT...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCATTGGCTGCTGCTGCTaGTGGGTTGGCACTGGCAGC +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLIGCCC*WVGTGS
Trigger: GCTGCCAGTGCCAACCCAGCAGCAGCAGCAGCCAAT...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAGGCCAACAAATTGGCTaGTGCTGCTGCTGGGTTGGC +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEGQQIG*CCCWVG
Trigger: GCCAACCCAGCAGCAGCAGCAGCCAATTTGTTGGCC...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACAGCCTGTGTTGCAGCTaGTGTTCCAGTAATGGTTAC +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADSLCCS*CSSNGY
Trigger: GTAACCATTACTGGAACACCAGCTGCAACACAGGCT...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGGTTTCTGGGAAAGCTaGACCCAAGCCCCTGACTGC +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLGFWES*TQAPDC
Trigger: GCAGTCAGGGGCTTGGGTGCAGCTTTCCCAGAAACC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCCCGTTCCACCAGCCGTaGTGCCGCTGGCTGAGGCTT +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSPFHQP*CRWLRL
Trigger: AAGCCTCAGCCAGCGGCAGCACGGCTGGTGGAACGG...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACGGTAGTTGGGGAAGATaGCAATGTTTGTTTGATGCG +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADGSWGR*QCLFDA
Trigger: CGCATCAAACAAACATTGCCATCTTCCCCAACTACC...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAACTCTGGAGGTGGTCATaGGGTCAGATGGAGAGGACT +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSELWRWS*GQMERT
Trigger: AGTCCTCTCCATCTGACCCCATGACCACCTCCAGAG...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAATCCCATCGGGTTTCTaGGAAAGCTGCACCCAAGCC +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEIPSGF*ESCTQA
Trigger: GGCTTGGGTGCAGCTTTCCCAGAAACCCGATGGGAT...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCCCCTCTCTTGCAAGTTaGTCCCATCGGGTTTCTGGG +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLPSLAS*SHRVSG
Trigger: CCCAGAAACCCGATGGGATCAACTTGCAAGAGAGGG...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACTGTGTAATTAAATACTaGGCAGCCTGTGTTGCAGCT +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADCVIKY*AACVAA
Trigger: AGCTGCAACACAGGCTGCTCAGTATTTAATTACACA...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGCAACAAATTGGCTGCTaGTGCTGCTGGGTTGGCACT +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMEQQIGC*CCWVGT
Trigger: AGTGCCAACCCAGCAGCAGCAGCAGCCAATTTGTTG...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGATTGGCTCTGGAGGTaGTCATGGGGTCAGATGGAG +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLDWLWR*SWGQME
Trigger: CTCCATCTGACCCCATGACCACCTCCAGAGCCAATC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACCCTTTGATCCATCTGTaGATTTCTCTGTCCCTAGAA +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADPLIHL*ISLSLE
Trigger: TTCTAGGGACAGAGAAATCCACAGATGGATCAAAGG...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TGCTACCATCTGATGGGAACCTACCATGAAGGAGTACAGGGGAGAGCTACAAATGCTTCTGATTGGCTCTaGAGGTGGTCATGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: CYHLMGTYHEGVQGRATNASDWL*RWSWGQ
Trigger: CTGACCCCATGACCACCTCCAGAGCCAATCAGAAGC...ATTTGTAGCTCTCCCCTGTACTCCTTCATGGTAGGTTCCCATCAGATGGTAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
3UTR CAA 72 bp GAGGTTAACAGATGGTGTGTCAAATGGCCTGGACAGTaGGCACTCAGGAGAGGTACAGAAGAGGGTGACAGT +
Preference number: 4 (lower is better)
Translates to: EVNRWCVKWPGQ*ALRRGTEEGDS
Trigger: ACTGTCACCCTCTTCTGTACCTCTCCTGAGTGCCAACTGTCCAGGCCATTTGACACACCATCTGTTAACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACAATGAATCCATGAACTaGGTTCAGCGCTTCAATTGT +
Preference number: 4 (lower is better)
Translates to: ETALAASAMLQELRHGADNESMN*VQRFNC
Trigger: ACAATTGAAGCGCTGAACGCAGTTCATGGATTCATT...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGCCTTCCGATTCCTTGTaGCAGGTACGAATTCTCCCT +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMEPSDSL*QVRILP
Trigger: AGGGAGAATTCGTACCTGGCACAAGGAATCGGAAGG...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAACTGAGCAGCCTGTGTTaGAGCTGGTGTTCCAGTAAT +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSELSSLC*SWCSSN
Trigger: ATTACTGGAACACCAGCTGCAACACAGGCTGCTCAG...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGGCAGCCCGAACTCCTTaGTCATATGTGATCCTCTGT +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMEAARTP*SYVILC
Trigger: ACAGAGGATCACATATGAGCAAGGAGTTCGGGCTGC...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAACCTTTAGAAAGTACTaGCCGTCTTCGCCCGTGTTG +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSETFRKY*PSSPVL
Trigger: CAACACGGGCGAAGACGGCCAGTACTTTCTAAAGGT...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGTGGCTGAGGCTTCACTaGCATAGGTGGCCAACAAAT +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMEWLRLH*HRWPTN
Trigger: ATTTGTTGGCCACCTATGCCAGTGAAGCCTCAGCCA...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCCAAATTGGCTGCTGCTaGTGCTGGGTTGGCACTGGC +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSQIGCC*CWVGTG
Trigger: GCCAGTGCCAACCCAGCAGCAGCAGCAGCCAATTTG...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAGGAGATCTGTATCCTTaGACCAGTCAACTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEGDLYP*TSQLLV
Trigger: TACCAGGAGTTGACTGGTGCAAGGATACAGATCTCC...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCTCTCTGTCCCTAGAATaGCACTGGCAGCTAGGGGCG +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSSLSLE*HWQLGA
Trigger: CGCCCCTAGCTGCCAGTGCCATTCTAGGGACAGAGA...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAATGGGTCCCGTTCTGCTaGATGGGAGCTGCCGCCATC +
Preference number: 4 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEWVPFC*MGAAAI
Trigger: GATGGCGGCAGCTCCCATTCAGCAGAACGGGACCCA...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TGCTACCATCTGATGGGAACCTACCATGAAGGAGTACAGGGGAGAGCTACAAATGAGGTTGTAGGATACTaGCTGGTTCTGTCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: CYHLMGTYHEGVQGRATNEVVGY*LVLSWQ
Trigger: TTGCCAAGACAGAACCAGTCAGTATCCTACAACCTC...ATTTGTAGCTCTCCCCTGTACTCCTTCATGGTAGGTTCCCATCAGATGGTAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR TCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCCTGCACCCAAGCCCCTaGCTGCTCCATTATAGCCTT +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSLHPSP*LLHYSL
Trigger: AAGGCTATAATGGAGCAGTCAGGGGCTTGGGTGCAG...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGGACTTGGTGGTAGTTaGGGAAGATGGCAATGTTTG +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLGLGGS*GRWQCL
Trigger: CAAACATTGCCATCTTCCCCAACTACCACCAAGTCC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAATAAGGAGATCCGGTTaGATTGGAATTTGCCACTGG +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEIRRSG*IGICHW
Trigger: CCAGTGGCAAATTCCAATCCAACCGGATCTCCTTAT...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAGTTTCTTTTTGCAACTaGACAATTGTCTGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEVSFCN*TIVCPP
Trigger: GGGAGGACAGACAATTGTTCAGTTGCAAAAAGAAAC...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGCACCAGTCAACTCCTaGTATTCCACTAAGGTTTTC +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLAPVNS*YSTKVF
Trigger: GAAAACCTTAGTGGAATACCAGGAGTTGACTGGTGC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCCCAGGTCATTGCCTGTaGAGCCAGATAAAACTGCTG +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSPGHCL*SQIKLL
Trigger: CAGCAGTTTTATCTGGCTTCACAGGCAATGACCTGG...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAATTCAACTACATCCTTTaGTCCATCTGTGGATTTCTC +
Preference number: 4 (lower is better)
Translates to: WISIAEQPSLHAYLWQSEFNYIL*SICGFL
Trigger: GAGAAATCCACAGATGGATCAAAGGATGTAGTTGAA...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp ACCATGAAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGCAGGAGCTATGCTTCTaGTTGGCTCTGGAGGTGGTC +
Preference number: 4 (lower is better)
Translates to: TMKEYRGELQITENEMLLQELCF*LALEVV
Trigger: GACCACCTCCAGAGCCAATCAGAAGCATAGCTCCTG...CAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTTCATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR GCA 90 bp TACTGCTACCATCTGATGGGAACCTACCATGAAGGAGTACAGGGGAGAGCTACAAATGAATCCATGAACTaGGTTCAGCGCTTCAATTGT +
Preference number: 4 (lower is better)
Translates to: YCYHLMGTYHEGVQGRATNESMN*VQRFNC
Trigger: ACAATTGAAGCGCTGAACGCAGTTCATGGATTCATT...TGTAGCTCTCCCCTGTACTCCTTCATGGTAGGTTCCCATCAGATGGTAGCAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCATTGGAATTTGCCACTaGACCTGTCACATTGGCATA +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLIGICH*TCHIGI
Trigger: TATGCCAATGTGACAGGTCCAGTGGCAAATTCCAAT...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCGAGATCCGGTTGGATTaGAATTTGCCACTGGACCTG +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSEIRLD*NLPLDL
Trigger: CAGGTCCAGTGGCAAATTCCAATCCAACCGGATCTC...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCCGAATTCTCCCTTTTTaGAGATCTGTATCCTTGCAC +
Preference number: 4 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLRILPF*RSVSLH
Trigger: GTGCAAGGATACAGATCTCCAAAAAGGGAGAATTCG...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCGGATTAACGGTGGTCTaGGGTTGTAGGATACTGACT +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSGLTVV*GCRILT
Trigger: AGTCAGTATCCTACAACCTCAGACCACCGTTAATCC...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCAAAGTATCCATTGGTTaGAGCAGTAGCAGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSKVSIG*SSSSSQ
Trigger: CTGGCTGCTGCTACTGCTGCAACCAATGGATACTTT...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp AAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCCTCTGGAGGTGGTCATaGGGTCAGATGGAGAGGACT +
Preference number: 4 (lower is better)
Translates to: KEYRGELQITENEMLLISLWRWS*GQMERT
Trigger: AGTCCTCTCCATCTGACCCCATGACCACCTCCAGAG...GCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CCA 90 bp GAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCTACGATTGGCTCTGGAGGTaGTCATGGGGTCAGATGGAG +
Preference number: 4 (lower is better)
Translates to: EYRGELQITENEMLLISYDWLWR*SWGQME
Trigger: CTCCATCTGACCCCATGACCACCTCCAGAGCCAATC...GTAGCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
3UTR CAA 72 bp AGACATGGAGCATCACACTCATTGTTCTTTAATTGGTaGCACAGAAAGGAGCAGCTGGGATGCCATTTAGCT +
Preference number: 4 (lower is better)
Translates to: RHGASHSLFFNW*HRKEQLGCHLA
Trigger: AGCTAAATGGCATCCCAGCTGCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCACTATAATCTTTACCTaGTTGGCTCTGGAGGTGGTC +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSTIIFT*LALEVV
Trigger: GACCACCTCCAGAGCCAATCAGGTAAAGATTATAGT...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGCCTCTCAGTAGTACCTaGATAAAAATCTTTGGATTT +
Preference number: 4 (lower is better)
Translates to: EWALASMQHYFHCLVQMEPLSST*IKIFGF
Trigger: AAATCCAAAGATTTTTATCCAGGTACTACTGAGAGG...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAATTACCTGATTGGCTCTaGAGGTGGTCATGGGGTCAG +
Preference number: 4 (lower is better)
Translates to: WCGNIILKVCYRCDGKLELPDWL*RWSWGQ
Trigger: CTGACCCCATGACCACCTCCAGAGCCAATCAGGTAA...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp ACCATGAAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGGGATTAACGGTGGTCTaGGGTTGTAGGATACTGACT +
Preference number: 4 (lower is better)
Translates to: TMKEYRGELQITENEMLLGLTVV*GCRILT
Trigger: AGTCAGTATCCTACAACCTCAGACCACCGTTAATCC...CAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTTCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR GCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAGTGACAACCCTCTCTTaGAAGTTGATCCCATCGGGT +
Preference number: 4 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEVTTLS*KLIPSG
Trigger: ACCCGATGGGATCAACTTGCAAGAGAGGGTTGTCAC...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp ACCATGAAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGGGACTTGGTGGTAGTTaGGGAAGATGGCAATGTTTG +
Preference number: 4 (lower is better)
Translates to: TMKEYRGELQITENEMLLGLGGS*GRWQCL
Trigger: CAAACATTGCCATCTTCCCCAACTACCACCAAGTCC...CAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTTCATGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR TCA 90 bp AAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCTCTGCAATGAATCCATaGACTGCGTTCAGCGCTTCA +
Preference number: 4 (lower is better)
Translates to: KEYRGELQITENEMLLISSAMNP*TAFSAS
Trigger: TGAAGCGCTGAACGCAGTTCATGGATTCATTGCAGA...GCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR TCA 90 bp ATACAGTCTATAGAAACCAGCATGTCAAAAGAGGGACTTATAACTGTACAGATGTCTGCAATGAATCCATaGACTGCGTTCAGCGCTTCA +
Preference number: 4 (lower is better)
Translates to: IQSIETSMSKEGLITVQMSAMNP*TAFSAS
Trigger: TGAAGCGCTGAACGCAGTTCATGGATTCATTGCAGA...CATCTGTACAGTTATAAGTCCCTCTTTTGACATGCTGGTTTCTATAGACTGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS-3UTR TCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAGAGGTTGTAGGATACTaGCTGGTTCTGTCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEEVVGY*LVLSWQ
Trigger: TTGCCAAGACAGAACCAGTCAGTATCCTACAACCTC...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR TCA 90 bp AACAAAAGTTTCCTCAAATCTCTGCACTTTGCAATACAGTCTATAGAAACCAGCGAGGTTGTAGGATACTaGCTGGTTCTGTCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: NKSFLKSLHFAIQSIETSEVVGY*LVLSWQ
Trigger: TTGCCAAGACAGAACCAGTCAGTATCCTACAACCTC...GCTGGTTTCTATAGACTGTATTGCAAAGTGCAGAGATTTGAGGAAACTTTTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS-3UTR TCA 90 bp CTTTGCAATACAGTCTATAGAAACCAGCATGTCAAAAGAGGGACTTATAACTGTGGATTAACGGTGGTCTaGGGTTGTAGGATACTGACT +
Preference number: 4 (lower is better)
Translates to: LCNTVYRNQHVKRGTYNCGLTVV*GCRILT
Trigger: AGTCAGTATCCTACAACCTCAGACCACCGTTAATCC...ACAGTTATAAGTCCCTCTTTTGACATGCTGGTTTCTATAGACTGTATTGCAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS-3UTR GCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAACACTTCAGCAGTGTTTaGATAAGGAGATCCGGTTGG +
Preference number: 4 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEHFSSV*IRRSGW
Trigger: CCAACCGGATCTCCTTATGCAAACACTGCTGAAGTG...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAACCCTATTATCAGACCTaGTGTGCTGTTGGGAACTAT +
Preference number: 4 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEPYYQT*CAVGNY
Trigger: ATAGTTCCCAACAGCACAGCAGGTCTGATAATAGGG...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAGGTTGGATTGGAATTTaGCACTGGACCTGTCACATT +
Preference number: 4 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEGWIGI*HWTCHI
Trigger: AATGTGACAGGTCCAGTGGCAAATTCCAATCCAACC...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CCA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCTCCTCTTGTATCTTCTaGATGATAAGTTCAACAGCT +
Preference number: 4 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSSSCIF*MISSTA
Trigger: AGCTGTTGAACTTATCATCCAGAAGATACAAGAGGA...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
3UTR CAA 72 bp TTTCACTTGTTTATATATCTAATGGCAACCCAAGTATaGGCCTCTGCACCACTTTTAATGAGACAATTGCCC +
Preference number: 4 (lower is better)
Translates to: FHLFIYLMATQV*ASAPLLMRQLP
Trigger: GGGCAATTGTCTCATTAAAAGTGGTGCAGAGGCCAATACTTGGGTTGCCATTAGATATATAAACAAGTGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR GCA 90 bp TTTGCAATACAGTCTATAGAAACCAGCATGTCAAAAGAGGGACTTATAACTGTAAATGAATCCATGAACTaGGTTCAGCGCTTCAATTGT +
Preference number: 4 (lower is better)
Translates to: FAIQSIETSMSKEGLITVNESMN*VQRFNC
Trigger: ACAATTGAAGCGCTGAACGCAGTTCATGGATTCATT...TACAGTTATAAGTCCCTCTTTTGACATGCTGGTTTCTATAGACTGTATTGCAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS-3UTR CCA 90 bp AAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCCCTCTCAGTAGTACCTaGATAAAAATCTTTGGATTT +
Preference number: 4 (lower is better)
Translates to: KEYRGELQITENEMLLISPLSST*IKIFGF
Trigger: AAATCCAAAGATTTTTATCCAGGTACTACTGAGAGG...GCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
3UTR CAA 72 bp CCATTGTCTAGTTCAGATGGAGAACAGGTGCTTTTATaGATCTGTAAACTTACCAATGTAATTTTCCACAGT +
Preference number: 4 (lower is better)
Translates to: PLSSSDGEQVLL*ICKLTNVIFHS
Trigger: ACTGTGGAAAATTACATTGGTAAGTTTACAGATCAATAAAAGCACCTGTTCTCCATCTGAACTAGACAATGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 90 bp GCGCTTCAAGCGGCCTTTTCCGCGAGTCCGGCGGGTCCAGATCTATaGGAACCCCCGTATGGGTCCCGTTCTGCTGAATGGGAGCTGCCG +
Preference number: 5 (lower is better)
Translates to: ALQAAFSASPAGPDL*EPPYGSRSAEWELP
Trigger: CGGCAGCTCCCATTCAGCAGAACGGGACCCATACGGGGGTTCCCATAGATCTGGACCCGCCGGACTCGCGGAAAAGGCCGCTTGAAGCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 90 bp CCTTTAGAAAGTACTGGCCGTCTTCGCCCGTGTTGGTCCTCTTGGTaGTGCCGGCTTCAGGGGGCGCTTCAAGCGGCCTTTTCCGCGAGT +
Preference number: 5 (lower is better)
Translates to: PLESTGRLRPCWSSW*CRLQGALQAAFSAS
Trigger: ACTCGCGGAAAAGGCCGCTTGAAGCGCCCCCTGAAGCCGGCAGCACCAAGAGGACCAACACGGGCGAAGACGGCCAGTACTTTCTAAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 90 bp TACCTAATGCAAATGTCCCCGCCGTTCCACCAGCCGTGCTGCCGCTaGCTGAGGCTTCACTGGCATAGGTGGCCAACAAATTGGCTGCTG +
Preference number: 5 (lower is better)
Translates to: YLMQMSPPFHQPCCR*LRLHWHRWPTNWLL
Trigger: CAGCAGCCAATTTGTTGGCCACCTATGCCAGTGAAGCCTCAGCCAGCGGCAGCACGGCTGGTGGAACGGCGGGGACATTTGCATTAGGTA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGCTGCTGCTGCTGGGTaGGCACTGGCAGCTGCGGCA +
Preference number: 5 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLAAAAG*ALAAAA
Trigger: TGCCGCAGCTGCCAGTGCCAACCCAGCAGCAGCAGC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACATGGCCACCAGGTCATaGCCTGTGAAGCCAGATAAA +
Preference number: 5 (lower is better)
Translates to: ETALAASAMLQELRHGADMATRS*PVKPDK
Trigger: TTTATCTGGCTTCACAGGCAATGACCTGGTGGCCAT...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACCTGACTGGTTCTGTCTaGGCAACATTTTGGGGCATT +
Preference number: 5 (lower is better)
Translates to: ETALAASAMLQELRHGADLTGSV*ATFWGI
Trigger: AATGCCCCAAAATGTTGCCAAGACAGAACCAGTCAG...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACCATAAGGAGATCCGGTaGGATTGGAATTTGCCACTG +
Preference number: 5 (lower is better)
Translates to: ETALAASAMLQELRHGADHKEIR*DWNLPL
Trigger: CAGTGGCAAATTCCAATCCAACCGGATCTCCTTATG...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACACACTTCAGCAGTGTTaGCATAAGGAGATCCGGTTG +
Preference number: 5 (lower is better)
Translates to: ETALAASAMLQELRHGADTLQQC*HKEIRL
Trigger: CAACCGGATCTCCTTATGCAAACACTGCTGAAGTGT...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 90 bp ACAACCCTCTCTTGCAAGTTGATCCCATCGGGTTTCTGGGAAAGCTaGACCCAAGCCCCTGACTGCTCCATTATAGCCTTCACAGTAGCA +
Preference number: 5 (lower is better)
Translates to: TTLSCKLIPSGFWES*TQAPDCSIIAFTVA
Trigger: TGCTACTGTGAAGGCTATAATGGAGCAGTCAGGGGCTTGGGTGCAGCTTTCCCAGAAACCCGATGGGATCAACTTGCAAGAGAGGGTTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCCCGTCTTCGCCCGTGTaGGTCCTCTTGGTGCTGCCG +
Preference number: 5 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSPSSPV*VLLVLP
Trigger: CGGCAGCACCAAGAGGACCAACACGGGCGAAGACGG...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAAACTGCACTGGCTGCTAGCGCCATGCTGCAAGAACTCCGTCATGGAGCAGACAACAGCTTTTCGGTTTaGTTCAGGTTCTCCACTCAC +
Preference number: 5 (lower is better)
Translates to: ETALAASAMLQELRHGADNSFSV*FRFSTH
Trigger: GTGAGTGGAGAACCTGAACAAAACCGAAAAGCTGTT...GTCTGCTCCATGACGGAGTTCTTGCAGCATGGCGCTAGCAGCCAGTGCAGTTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 90 bp CAACTACATCCTTTGATCCATCTGTGGATTTCTCTGTCCCTAGAATaGCACTGGCAGCTAGGGGCGAGGCAGCTCCAAAGTATCCATTGG +
Preference number: 5 (lower is better)
Translates to: QLHPLIHLWISLSLE*HWQLGARQLQSIHW
Trigger: CCAATGGATACTTTGGAGCTGCCTCGCCCCTAGCTGCCAGTGCCATTCTAGGGACAGAGAAATCCACAGATGGATCAAAGGATGTAGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 90 bp GGAGCTATGCTTCTGATTGGCTCTGGAGGTGGTCATGGGGTCAGATaGAGAGGACTTGGTGGTAGTTGGGGAAGATGGCAATGTTTGTTT +
Preference number: 5 (lower is better)
Translates to: GAMLLIGSGGGHGVR*RGLGGSWGRWQCLF
Trigger: AAACAAACATTGCCATCTTCCCCAACTACCACCAAGTCCTCTCCATCTGACCCCATGACCACCTCCAGAGCCAATCAGAAGCATAGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CAA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGACCCTCTCTTGCAAGTaGATCCCATCGGGTTTCTGG +
Preference number: 5 (lower is better)
Translates to: EWALASMQHYFHCLVQMETLSCK*IPSGFW
Trigger: CCAGAAACCCGATGGGATCAACTTGCAAGAGAGGGT...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGAGTGACAACCCTCTCTaGCAAGTTGATCCCATCGGG +
Preference number: 5 (lower is better)
Translates to: EWALASMQHYFHCLVQMESDNPL*QVDPIG
Trigger: CCCGATGGGATCAACTTGCAAGAGAGGGTTGTCACT...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGCGTTCAGCGCTTCAATaGTTCCCTGGATCAAGCAAA +
Preference number: 5 (lower is better)
Translates to: EWALASMQHYFHCLVQMERSALQ*FPGSSK
Trigger: TTTGCTTGATCCAGGGAACAATTGAAGCGCTGAACG...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TACTGCTACCATCTGATGGGAACCTACCATGAAGGAGTACAGGGGAGAGCTACACTGACTGGTTCTGTCTaGGCAACATTTTGGGGCATT +
Preference number: 5 (lower is better)
Translates to: YCYHLMGTYHEGVQGRATLTGSV*ATFWGI
Trigger: AATGCCCCAAAATGTTGCCAAGACAGAACCAGTCAG...TGTAGCTCTCCCCTGTACTCCTTCATGGTAGGTTCCCATCAGATGGTAGCAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CAA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCGCTCCAAAGTATCCATaGGTTGCAGCAGTAGCAGCA +
Preference number: 5 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLAPKYP*VAAVAA
Trigger: TGCTGCTACTGCTGCAACCAATGGATACTTTGGAGC...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGTTACCTTCCGATTCCTaGTGCCAGGTACGAATTCTC +
Preference number: 5 (lower is better)
Translates to: EWALASMQHYFHCLVQMELPSDS*CQVRIL
Trigger: GAGAATTCGTACCTGGCACAAGGAATCGGAAGGTAA...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 90 bp AGTTTTCTGGAACTGCTATTTCAACTACATCCTTTGATCCATCTGTaGATTTCTCTGTCCCTAGAATGGCACTGGCAGCTAGGGGCGAGG +
Preference number: 5 (lower is better)
Translates to: SFLELLFQLHPLIHL*ISLSLEWHWQLGAR
Trigger: CCTCGCCCCTAGCTGCCAGTGCCATTCTAGGGACAGAGAAATCCACAGATGGATCAAAGGATGTAGTTGAAATAGCAGTTCCAGAAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS TCA 90 bp GCCCGAACTCCTTGCTCATATGTGATCCTCTGTGTAATTAAATACTaGGCAGCCTGTGTTGCAGCTGGTGTTCCAGTAATGGTTACCTTC +
Preference number: 5 (lower is better)
Translates to: ARTPCSYVILCVIKY*AACVAAGVPVMVTF
Trigger: GAAGGTAACCATTACTGGAACACCAGCTGCAACACAGGCTGCTCAGTATTTAATTACACAGAGGATCACATATGAGCAAGGAGTTCGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 90 bp TATAATCTTTACCTGATTGGCTCTGGAGGTGGTCATGGGGTCAGATaGAGAGGACTTGGTGGTAGTTGGGGAAGATGGCAATGTTTGTTT +
Preference number: 5 (lower is better)
Translates to: YNLYLIGSGGGHGVR*RGLGGSWGRWQCLF
Trigger: AAACAAACATTGCCATCTTCCCCAACTACCACCAAGTCCTCTCCATCTGACCCCATGACCACCTCCAGAGCCAATCAGGTAAAGATTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGTTGGATTTAGACAGCTaGATAGTGGCTCCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: EWALASMQHYFHCLVQMELDLDS*IVAPVS
Trigger: AGAAACTGGAGCCACTATCAAGCTGTCTAAATCCAA...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAATGGGCCCTGGCCAGCATGCAGCATTATTTCCATTGTCTAGTTCAGATGGAGACTCTGTGGATCCTCTaGTATCTTCTGGATGATAAG +
Preference number: 5 (lower is better)
Translates to: EWALASMQHYFHCLVQMETLWIL*YLLDDK
Trigger: CTTATCATCCAGAAGATACAAGAGGATCCACAGAGT...CTCCATCTGAACTAGACAATGGAAATAATGCTGCATGCTGGCCAGGGCCCATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCGGAGATCCGGTTGGATaGGAATTTGCCACTGGACCT +
Preference number: 5 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSGDPVG*EFATGP
Trigger: AGGTCCAGTGGCAAATTCCAATCCAACCGGATCTCC...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TGGATCAGTATAGCTGAACAGCCATCGTTACACGCCTACCTGTGGCAGTCTGAAACGAATTCTCCCTTTTaGGAGATCTGTATCCTTGCA +
Preference number: 5 (lower is better)
Translates to: WISIAEQPSLHAYLWQSETNSPF*EICILA
Trigger: TGCAAGGATACAGATCTCCAAAAAGGGAGAATTCGT...TTCAGACTGCCACAGGTAGGCGTGTAACGATGGCTGTTCAGCTATACTGATCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCTCAGATGGAGAGGACTaGGTGGTAGTTGGGGAAGAT +
Preference number: 5 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSSDGED*VVVGED
Trigger: ATCTTCCCCAACTACCACCAAGTCCTCTCCATCTGA...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCCGGTTGGATTGGAATTaGCCACTGGACCTGTCACAT +
Preference number: 5 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSRLDWN*PLDLSH
Trigger: ATGTGACAGGTCCAGTGGCAAATTCCAATCCAACCG...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAACGGCTGCTGCGGCAGTaGGTAACACTTCAGCAGTGT +
Preference number: 5 (lower is better)
Translates to: WCGNIILKVCYRCDGKLERLLRQ*VTLQQC
Trigger: ACACTGCTGAAGTGTTACCAACTGCCGCAGCAGCCG...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp AGGAAGGCAGCCGTTAAAAAGTCTAGGTGCAATGTGGTGCTGAAAGGAAAGCTCCTCCTTTGCCAAGTATaGCACCAACTAAGTTTTCTG +
Preference number: 5 (lower is better)
Translates to: RKAAVKKSRCNVVLKGKLLLCQV*HQLSFL
Trigger: CAGAAAACTTAGTTGGTGCAATACTTGGCAAAGGAG...GAGCTTTCCTTTCAGCACCACATTGCACCTAGACTTTTTAACGGCTGCCTTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp TCAGACATGGAGCATCACACTCATTGTTCTTTAATTGGTTGCACAGAAAGGAGCTGGAGATCTGTATCCTaGCACCAGTCAACTCCTGGT +
Preference number: 5 (lower is better)
Translates to: SDMEHHTHCSLIGCTERSWRSVS*HQSTPG
Trigger: ACCAGGAGTTGACTGGTGCAAGGATACAGATCTCCA...GCTCCTTTCTGTGCAACCAATTAAAGAACAATGAGTGTGATGCTCCATGTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS TCA 90 bp GAAGATGGCAATGTTTGTTTGATGCGATCAGGATTAACGGTGGTCTaGGGTTGTAGGATACTGACTGGTTCTGTCTTGGCAACATTTTGG +
Preference number: 5 (lower is better)
Translates to: EDGNVCLMRSGLTVV*GCRILTGSVLATFW
Trigger: CCAAAATGTTGCCAAGACAGAACCAGTCAGTATCCTACAACCTCAGACCACCGTTAATCCTGATCGCATCAAACAAACATTGCCATCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021438.8
ENSMUST00000219330.2
CDS TCA 90 bp AAAGACTCTCTCTGTTGTTTGATGCGATCAGGATTAACGGTGGTCTaGGGTTGTAGGATACTGACTGGTTCTGTCTTGGCAACATTTTGG +
Preference number: 5 (lower is better)
Translates to: KDSLCCLMRSGLTVV*GCRILTGSVLATFW
Trigger: CCAAAATGTTGCCAAGACAGAACCAGTCAGTATCCTACAACCTCAGACCACCGTTAATCCTGATCGCATCAAACAACAGAGAGAGTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS-3UTR CAA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAGGCAGCCCGAACTCCTaGCTCATATGTGATCCTCTG +
Preference number: 5 (lower is better)
Translates to: WCGNIILKVCYRCDGKLEGSPNS*LICDPL
Trigger: CAGAGGATCACATATGAGCAAGGAGTTCGGGCTGCC...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 90 bp ACCTGTCACATTGGCATAACTGATATTGAGACAGCTGCCACTCTGTaGATCCTCTTGTATCTTCTGGATGATAAGTTCAACAGCTTTTCG +
Preference number: 5 (lower is better)
Translates to: TCHIGITDIETAATL*ILLYLLDDKFNSFS
Trigger: CGAAAAGCTGTTGAACTTATCATCCAGAAGATACAAGAGGATCCACAGAGTGGCAGCTGTCTCAATATCAGTTATGCCAATGTGACAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS TCA 90 bp TTGGATTTAGACAGCTTGATAGTGGCTCCAGTTTCTTTTTGCAACTaGACAATTGTCTGTCCTCCCTTCCCAATTATAGATCCAGCAGCA +
Preference number: 5 (lower is better)
Translates to: LDLDSLIVAPVSFCN*TIVCPPFPIIDPAA
Trigger: TGCTGCTGGATCTATAATTGGGAAGGGAGGACAGACAATTGTTCAGTTGCAAAAAGAAACTGGAGCCACTATCAAGCTGTCTAAATCCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 90 bp TTGCACCAGTCAACTCCTGGTATTCCACTAAGGTTTTCCCTCCTTTaGCAAGTATTGCACCAACTAAGTTTTCTGGAACTGCTATTTCAA +
Preference number: 5 (lower is better)
Translates to: LHQSTPGIPLRFSLL*QVLHQLSFLELLFQ
Trigger: TTGAAATAGCAGTTCCAGAAAACTTAGTTGGTGCAATACTTGGCAAAGGAGGGAAAACCTTAGTGGAATACCAGGAGTTGACTGGTGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp AAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCTCAGATGGAGAGGACTaGGTGGTAGTTGGGGAAGAT +
Preference number: 5 (lower is better)
Translates to: KEYRGELQITENEMLLISSDGED*VVVGED
Trigger: ATCTTCCCCAACTACCACCAAGTCCTCTCCATCTGA...GCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CAA 90 bp AAGGAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCCGTTCAGCGCTTCAATaGTTCCCTGGATCAAGCAAA +
Preference number: 5 (lower is better)
Translates to: KEYRGELQITENEMLLISRSALQ*FPGSSK
Trigger: TTTGCTTGATCCAGGGAACAATTGAAGCGCTGAACG...GCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CAA 90 bp AATACAGTCTATAGAAACCAGCATGTCAAAAGAGGGACTTATAACTGTACAGATCTGACTGGTTCTGTCTaGGCAACATTTTGGGGCATT +
Preference number: 5 (lower is better)
Translates to: NTVYRNQHVKRGTYNCTDLTGSV*ATFWGI
Trigger: AATGCCCCAAAATGTTGCCAAGACAGAACCAGTCAG...ATCTGTACAGTTATAAGTCCCTCTTTTGACATGCTGGTTTCTATAGACTGTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS-3UTR CAA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAAAGACCTGCTGTGCTGTaGGGAACTATAATCTTTACC +
Preference number: 5 (lower is better)
Translates to: WCGNIILKVCYRCDGKLERPAVL*GTIIFT
Trigger: GGTAAAGATTATAGTTCCCAACAGCACAGCAGGTCT...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCTACTTGGATTTAGACAGCTaGATAGTGGCTCCAGTTTCT +
Preference number: 5 (lower is better)
Translates to: EYRGELQITENEMLLISYLDLDS*IVAPVS
Trigger: AGAAACTGGAGCCACTATCAAGCTGTCTAAATCCAA...GTAGCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CAA 90 bp TGGTGTGGCAATATCATTTTAAAAGTTTGTTACAGATGTGATGGGAAGCTGGAATGTCTTGGCAACATTTaGGGGCATTTCTCGGATTTT +
Preference number: 5 (lower is better)
Translates to: WCGNIILKVCYRCDGKLECLGNI*GHFSDF
Trigger: AAAATCCGAGAAATGCCCCAAAATGTTGCCAAGACA...TTCCAGCTTCCCATCACATCTGTAACAAACTTTTAAAATGATATTGCCACACCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS-3UTR CAA 90 bp GAGTACAGGGGAGAGCTACAAATTACTGAGAATGAAATGTTATTGATAAGCTACTGTCTTGGCAACATTTaGGGGCATTTCTCGGATTTT +
Preference number: 5 (lower is better)
Translates to: EYRGELQITENEMLLISYCLGNI*GHFSDF
Trigger: AAAATCCGAGAAATGCCCCAAAATGTTGCCAAGACA...GTAGCTTATCAATAACATTTCATTCTCAGTAATTTGTAGCTCTCCCCTGTACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219330.2
CDS-3UTR CAA 90 bp CATGTCAAAAGAGGGACTTATAACTGTACAGATGGTAATGTCTTCATAGAGCTATGTCTTGGCAACATTTaGGGGCATTTCTCGGATTTT +
Preference number: 5 (lower is better)
Translates to: HVKRGTYNCTDGNVFIELCLGNI*GHFSDF
Trigger: AAAATCCGAGAAATGCCCCAAAATGTTGCCAAGACA...TAGCTCTATGAAGACATTACCATCTGTACAGTTATAAGTCCCTCTTTTGACATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS TCA 72 bp TGTCCCCGCCGTTCCACCAGCCGTGCTGCCGCTGGCTaGGGCTTCACTGGCATAGGTGGCCAACAAATTGGC +
Preference number: 6 (lower is better)
Translates to: CPRRSTSRAAAG*GFTGIGGQQIG
Trigger: GCCAATTTGTTGGCCACCTATGCCAGTGAAGCCTCAGCCAGCGGCAGCACGGCTGGTGGAACGGCGGGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 72 bp AGTACTGGCCGTCTTCGCCCGTGTTGGTCCTCTTGGTaGTGCCGGCTTCAGGGGGCGCTTCAAGCGGCCTTT +
Preference number: 6 (lower is better)
Translates to: STGRLRPCWSSW*CRLQGALQAAF
Trigger: AAAGGCCGCTTGAAGCGCCCCCTGAAGCCGGCAGCACCAAGAGGACCAACACGGGCGAAGACGGCCAGTACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 72 bp GCGGCCTTTTCCGCGAGTCCGGCGGGTCCAGATCTATaGGAACCCCCGTATGGGTCCCGTTCTGCTGAATGG +
Preference number: 6 (lower is better)
Translates to: AAFSASPAGPDL*EPPYGSRSAEW
Trigger: CCATTCAGCAGAACGGGACCCATACGGGGGTTCCCATAGATCTGGACCCGCCGGACTCGCGGAAAAGGCCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 72 bp CCAACAAATTGGCTGCTGCTGCTGCTGGGTTGGCACTaGCAGCTGCGGCAGCCAAAGCCCCCGTTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: PTNWLLLLLGWH*QLRQPKPPLLL
Trigger: CAGCAGCAACGGGGGCTTTGGCTGCCGCAGCTGCCAGTGCCAACCCAGCAGCAGCAGCAGCCAATTTGTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 72 bp CTAATGCAAATGTCCCCGCCGTTCCACCAGCCGTGCTaGCGCTGGCTGAGGCTTCACTGGCATAGGTGGCCA +
Preference number: 6 (lower is better)
Translates to: LMQMSPPFHQPC*RWLRLHWHRWP
Trigger: TGGCCACCTATGCCAGTGAAGCCTCAGCCAGCGGCAGCACGGCTGGTGGAACGGCGGGGACATTTGCATTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 72 bp CAAATGTCCCCGCCGTTCCACCAGCCGTGCTGCCGCTaGCTGAGGCTTCACTGGCATAGGTGGCCAACAAAT +
Preference number: 6 (lower is better)
Translates to: QMSPPFHQPCCR*LRLHWHRWPTN
Trigger: ATTTGTTGGCCACCTATGCCAGTGAAGCCTCAGCCAGCGGCAGCACGGCTGGTGGAACGGCGGGGACATTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 72 bp TTCACTGGCATAGGTGGCCAACAAATTGGCTGCTGCTaGTGCTGGGTTGGCACTGGCAGCTGCGGCAGCCAA +
Preference number: 6 (lower is better)
Translates to: FTGIGGQQIGCC*CWVGTGSCGSQ
Trigger: TTGGCTGCCGCAGCTGCCAGTGCCAACCCAGCAGCAGCAGCAGCCAATTTGTTGGCCACCTATGCCAGTGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 72 bp CTGGCAGCTAGGGGCGAGGCAGCTCCAAAGTATCCATaGGTTGCAGCAGTAGCAGCAGCCAGGCTACCTAAT +
Preference number: 6 (lower is better)
Translates to: LAARGEAAPKYP*VAAVAAARLPN
Trigger: ATTAGGTAGCCTGGCTGCTGCTACTGCTGCAACCAATGGATACTTTGGAGCTGCCTCGCCCCTAGCTGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 72 bp TCTTGCAAGTTGATCCCATCGGGTTTCTGGGAAAGCTaGACCCAAGCCCCTGACTGCTCCATTATAGCCTTC +
Preference number: 6 (lower is better)
Translates to: SCKLIPSGFWES*TQAPDCSIIAF
Trigger: GAAGGCTATAATGGAGCAGTCAGGGGCTTGGGTGCAGCTTTCCCAGAAACCCGATGGGATCAACTTGCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 72 bp GCAGCTGCGGCAGCCAAAGCCCCCGTTGCTGCTGCTTaGCTGAGACCTAAACCTAATGTGTTGAGATTATAT +
Preference number: 6 (lower is better)
Translates to: AAAAAKAPVAAA*LRPKPNVLRLY
Trigger: ATATAATCTCAACACATTAGGTTTAGGTCTCAGCCAAGCAGCAGCAACGGGGGCTTTGGCTGCCGCAGCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS GCA 72 bp TGTTCAGGTTCTCCACTCACAGTGACAACCCTCTCTTaGAAGTTGATCCCATCGGGTTTCTGGGAAAGCTGC +
Preference number: 6 (lower is better)
Translates to: CSGSPLTVTTLS*KLIPSGFWESC
Trigger: GCAGCTTTCCCAGAAACCCGATGGGATCAACTTGCAAGAGAGGGTTGTCACTGTGAGTGGAGAACCTGAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 72 bp GGTCATGGGGTCAGATGGAGAGGACTTGGTGGTAGTTaGGGAAGATGGCAATGTTTGTTTGATGCGATCAGG +
Preference number: 6 (lower is better)
Translates to: GHGVRWRGLGGS*GRWQCLFDAIR
Trigger: CCTGATCGCATCAAACAAACATTGCCATCTTCCCCAACTACCACCAAGTCCTCTCCATCTGACCCCATGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021438.8
ENSMUST00000219330.2
CDS CAA 72 bp TTGTTCAGGTTCTCCACTCACAGTGACAACCCTCTCTaGCAAGTTGATCCCATCGGGTTTCTGGGAAAGCTG +
Preference number: 6 (lower is better)
Translates to: LFRFSTHSDNPL*QVDPIGFLGKL
Trigger: CAGCTTTCCCAGAAACCCGATGGGATCAACTTGCAAGAGAGGGTTGTCACTGTGAGTGGAGAACCTGAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 72 bp TTCCGATTCCTTGTGCCAGGTACGAATTCTCCCTTTTaGGAGATCTGTATCCTTGCACCAGTCAACTCCTGG +
Preference number: 6 (lower is better)
Translates to: FRFLVPGTNSPF*EICILAPVNSW
Trigger: CCAGGAGTTGACTGGTGCAAGGATACAGATCTCCAAAAAGGGAGAATTCGTACCTGGCACAAGGAATCGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 90 bp ATGGTTACCTTCCGATTCCTTGTGCCAGGTACGAATTCTCCCTTTTaGGAGATCTGTATCCTTGCACCAGTCAACTCCTGGTATTCCACT +
Preference number: 6 (lower is better)
Translates to: MVTFRFLVPGTNSPF*EICILAPVNSWYST
Trigger: AGTGGAATACCAGGAGTTGACTGGTGCAAGGATACAGATCTCCAAAAAGGGAGAATTCGTACCTGGCACAAGGAATCGGAAGGTAACCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS TCA 72 bp CTCTGTTGTTTGATGCGATCAGGATTAACGGTGGTCTaGGGTTGTAGGATACTGACTGGTTCTGTCTTGGCA +
Preference number: 6 (lower is better)
Translates to: LCCLMRSGLTVV*GCRILTGSVLA
Trigger: TGCCAAGACAGAACCAGTCAGTATCCTACAACCTCAGACCACCGTTAATCCTGATCGCATCAAACAACAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219886.2
CDS CCA 72 bp CTTCAGCAGTGTTTGCATAAGGAGATCCGGTTGGATTaGAATTTGCCACTGGACCTGTCACATTGGCATAAC +
Preference number: 6 (lower is better)
Translates to: LQQCLHKEIRLD*NLPLDLSHWHN
Trigger: GTTATGCCAATGTGACAGGTCCAGTGGCAAATTCCAATCCAACCGGATCTCCTTATGCAAACACTGCTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 72 bp GTAACACTTCAGCAGTGTTTGCATAAGGAGATCCGGTaGGATTGGAATTTGCCACTGGACCTGTCACATTGG +
Preference number: 6 (lower is better)
Translates to: VTLQQCLHKEIR*DWNLPLDLSHW
Trigger: CCAATGTGACAGGTCCAGTGGCAAATTCCAATCCAACCGGATCTCCTTATGCAAACACTGCTGAAGTGTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS TCA 72 bp AATGTTTGTTTGATGCGATCAGGATTAACGGTGGTCTaGGGTTGTAGGATACTGACTGGTTCTGTCTTGGCA +
Preference number: 6 (lower is better)
Translates to: NVCLMRSGLTVV*GCRILTGSVLA
Trigger: TGCCAAGACAGAACCAGTCAGTATCCTACAACCTCAGACCACCGTTAATCCTGATCGCATCAAACAAACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021438.8
ENSMUST00000219330.2
CDS TCA 72 bp CCTTGCTCATATGTGATCCTCTGTGTAATTAAATACTaGGCAGCCTGTGTTGCAGCTGGTGTTCCAGTAATG +
Preference number: 6 (lower is better)
Translates to: PCSYVILCVIKY*AACVAAGVPVM
Trigger: CATTACTGGAACACCAGCTGCAACACAGGCTGCTCAGTATTTAATTACACAGAGGATCACATATGAGCAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 90 bp CTTGCACCAGTCAACTCCTGGTATTCCACTAAGGTTTTCCCTCCTTaGCCAAGTATTGCACCAACTAAGTTTTCTGGAACTGCTATTTCA +
Preference number: 6 (lower is better)
Translates to: LAPVNSWYSTKVFPP*PSIAPTKFSGTAIS
Trigger: TGAAATAGCAGTTCCAGAAAACTTAGTTGGTGCAATACTTGGCAAAGGAGGGAAAACCTTAGTGGAATACCAGGAGTTGACTGGTGCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 72 bp TATCTTCTGGATGATAAGTTCAACAGCTTTTCGGTTTaGTTCAGGTTCTCCACTCACAGTGACAACCCTCTC +
Preference number: 6 (lower is better)
Translates to: YLLDDKFNSFSV*FRFSTHSDNPL
Trigger: GAGAGGGTTGTCACTGTGAGTGGAGAACCTGAACAAAACCGAAAAGCTGTTGAACTTATCATCCAGAAGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 72 bp GTCAACTCCTGGTATTCCACTAAGGTTTTCCCTCCTTaGCCAAGTATTGCACCAACTAAGTTTTCTGGAACT +
Preference number: 6 (lower is better)
Translates to: VNSWYSTKVFPP*PSIAPTKFSGT
Trigger: AGTTCCAGAAAACTTAGTTGGTGCAATACTTGGCAAAGGAGGGAAAACCTTAGTGGAATACCAGGAGTTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 90 bp ATCCTCTTGTATCTTCTGGATGATAAGTTCAACAGCTTTTCGGTTTaGTTCAGGTTCTCCACTCACAGTGACAACCCTCTCTTGCAAGTT +
Preference number: 6 (lower is better)
Translates to: ILLYLLDDKFNSFSV*FRFSTHSDNPLLQV
Trigger: AACTTGCAAGAGAGGGTTGTCACTGTGAGTGGAGAACCTGAACAAAACCGAAAAGCTGTTGAACTTATCATCCAGAAGATACAAGAGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS TCA 72 bp GACAGCTTGATAGTGGCTCCAGTTTCTTTTTGCAACTaGACAATTGTCTGTCCTCCCTTCCCAATTATAGAT +
Preference number: 6 (lower is better)
Translates to: DSLIVAPVSFCN*TIVCPPFPIID
Trigger: ATCTATAATTGGGAAGGGAGGACAGACAATTGTTCAGTTGCAAAAAGAAACTGGAGCCACTATCAAGCTGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CCA 72 bp ATTGGCATAACTGATATTGAGACAGCTGCCACTCTGTaGATCCTCTTGTATCTTCTGGATGATAAGTTCAAC +
Preference number: 6 (lower is better)
Translates to: IGITDIETAATL*ILLYLLDDKFN
Trigger: GTTGAACTTATCATCCAGAAGATACAAGAGGATCCACAGAGTGGCAGCTGTCTCAATATCAGTTATGCCAAT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 90 bp TCAACTCCTGGTATTCCACTAAGGTTTTCCCTCCTTTGCCAAGTATaGCACCAACTAAGTTTTCTGGAACTGCTATTTCAACTACATCCT +
Preference number: 6 (lower is better)
Translates to: STPGIPLRFSLLCQV*HQLSFLELLFQLHP
Trigger: AGGATGTAGTTGAAATAGCAGTTCCAGAAAACTTAGTTGGTGCAATACTTGGCAAAGGAGGGAAAACCTTAGTGGAATACCAGGAGTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8
CDS CAA 72 bp GGTATTCCACTAAGGTTTTCCCTCCTTTGCCAAGTATaGCACCAACTAAGTTTTCTGGAACTGCTATTTCAA +
Preference number: 6 (lower is better)
Translates to: GIPLRFSLLCQV*HQLSFLELLFQ
Trigger: TTGAAATAGCAGTTCCAGAAAACTTAGTTGGTGCAATACTTGGCAAAGGAGGGAAAACCTTAGTGGAATACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021438.8