Pregenerated sensors for NOTO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068302Ensembl transcript IDs: ENSMUST00000089578.9, ENSMUST00000174469.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGCCAGGCCAGGAGAGAGCTGATGAATCCATCTTCAGGGCAGAGCTaGGACAGCGTCTATCCCATAAACCTCACCAGCTGGTACTCTGTA | + |
|
Preference number: 1 (lower is better) Translates to: SQARRELMNPSSGQS*DSVYPINLTSWYSV Trigger: TACAGAGTACCAGCTGGTGAGGTTTATGGGATAGACGCTGTCCCAGCTCTGCCCTGAAGATGGATTCATCAGCTCTCTCCTGGCCTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR CCA 90 bp | TACATTTGGTGTCCTTTGACCTTAAGGAAGCTCTTCACTGAGATGTaGGACAGGGAGGGCCAGCAGGTACCACAGGAAGAACTAGCCCAT | + |
|
Preference number: 1 (lower is better) Translates to: YIWCPLTLRKLFTEM*DREGQQVPQEELAH Trigger: ATGGGCTAGTTCTTCCTGTGGTACCTGCTGGCCCTCCCTGTCCCACATCTCAGTGAAGAGCTTCCTTAAGGTCAAAGGACACCAAATGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| 3UTR-3UTR CCA 90 bp | CATAGCCAGGCCAGGAGAGAGCTGATGAATCCATCTTCAGGGCAGAGCTGGGACCTCTTCACTGAGATGTaGGACAGGGAGGGCCAGCAG | + |
|
Preference number: 2 (lower is better) Translates to: HSQARRELMNPSSGQSWDLFTEM*DREGQQ Trigger: CTGCTGGCCCTCCCTGTCCCACATCTCAGTGAAGAG...GTCCCAGCTCTGCCCTGAAGATGGATTCATCAGCTCTCTCCTGGCCTGGCTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR-3UTR GCA 90 bp | CATAGCCAGGCCAGGAGAGAGCTGATGAATCCATCTTCAGGGCAGAGCTGGGACGTCAATCCATTATGCTaGTTCCAGAGTTCCCTTGCT | + |
|
Preference number: 2 (lower is better) Translates to: HSQARRELMNPSSGQSWDVNPLC*FQSSLA Trigger: AGCAAGGGAACTCTGGAAGCAGCATAATGGATTGAC...GTCCCAGCTCTGCCCTGAAGATGGATTCATCAGCTCTCTCCTGGCCTGGCTATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR-3UTR TCA 90 bp | CTGCTTCCAGAGTTCCCTTGCTTGATTGTCCAAGTACATTTGGTGTCCTTTGACAAGGAAGCTCTTCACTaGGATGTGGGACAGGGAGGG | + |
|
Preference number: 2 (lower is better) Translates to: LLPEFPCLIVQVHLVSFDKEALH*DVGQGG Trigger: CCCTCCCTGTCCCACATCTCAGTGAAGAGCTTCCTT...GTCAAAGGACACCAAATGTACTTGGACAATCAAGCAAGGGAACTCTGGAAGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| 3UTR-3UTR CCA 90 bp | AAGTACATTTGGTGTCCTTTGACCTTAAGGAAGCTCTTCACTGAGATGTGGGACCTCTTCACTGAGATGTaGGACAGGGAGGGCCAGCAG | + |
|
Preference number: 2 (lower is better) Translates to: KYIWCPLTLRKLFTEMWDLFTEM*DREGQQ Trigger: CTGCTGGCCCTCCCTGTCCCACATCTCAGTGAAGAG...GTCCCACATCTCAGTGAAGAGCTTCCTTAAGGTCAAAGGACACCAAATGTACTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| 3UTR CAA 90 bp | AAGGACATAGGTCAATCCATTATGCTGCTTCCAGAGTTCCCTTGCTaGATTGTCCAAGTACATTTGGTGTCCTTTGACCTTAAGGAAGCT | + |
|
Preference number: 2 (lower is better) Translates to: KDIGQSIMLLPEFPC*IVQVHLVSFDLKEA Trigger: AGCTTCCTTAAGGTCAAAGGACACCAAATGTACTTGGACAATCAAGCAAGGGAACTCTGGAAGCAGCATAATGGATTGACCTATGTCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| 3UTR CCA 72 bp | TGTCCTTTGACCTTAAGGAAGCTCTTCACTGAGATGTaGGACAGGGAGGGCCAGCAGGTACCACAGGAAGAA | + |
|
Preference number: 3 (lower is better) Translates to: CPLTLRKLFTEM*DREGQQVPQEE Trigger: TTCTTCCTGTGGTACCTGCTGGCCCTCCCTGTCCCACATCTCAGTGAAGAGCTTCCTTAAGGTCAAAGGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| 3UTR-3UTR CAA 90 bp | CATAGCCAGGCCAGGAGAGAGCTGATGAATCCATCTTCAGGGCAGAGCTGGGACATTGTCCAAGTACATTaGGTGTCCTTTGACCTTAAG | + |
|
Preference number: 3 (lower is better) Translates to: HSQARRELMNPSSGQSWDIVQVH*VSFDLK Trigger: CTTAAGGTCAAAGGACACCAAATGTACTTGGACAAT...GTCCCAGCTCTGCCCTGAAGATGGATTCATCAGCTCTCTCCTGGCCTGGCTATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR-3UTR CAA 90 bp | GAATCCATCTTCAGGGCAGAGCTGGGACAGCGTCTATCCCATAAACCTCACCAGTACATTTGGTGTCCTTaGACCTTAAGGAAGCTCTTC | + |
|
Preference number: 3 (lower is better) Translates to: ESIFRAELGQRLSHKPHQYIWCP*TLRKLF Trigger: GAAGAGCTTCCTTAAGGTCAAAGGACACCAAATGTA...CTGGTGAGGTTTATGGGATAGACGCTGTCCCAGCTCTGCCCTGAAGATGGATTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR GCA 72 bp | CCACAGGAAGAACTAGCCCATATAACTAAAGCCTCTTaGTCGGTCCTTAACTGCCAATTCCCAACTCAGCAT | + |
|
Preference number: 3 (lower is better) Translates to: PQEELAHITKAS*SVLNCQFPTQH Trigger: ATGCTGAGTTGGGAATTGGCAGTTAAGGACCGAGCAAGAGGCTTTAGTTATATGGGCTAGTTCTTCCTGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174469.2 |
||
| 3UTR TCA 72 bp | GTCAATCCATTATGCTGCTTCCAGAGTTCCCTTGCTTaGTTGTCCAAGTACATTTGGTGTCCTTTGACCTTA | + |
|
Preference number: 3 (lower is better) Translates to: VNPLCCFQSSLA*LSKYIWCPLTL Trigger: TAAGGTCAAAGGACACCAAATGTACTTGGACAATCAAGCAAGGGAACTCTGGAAGCAGCATAATGGATTGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| 3UTR TCA 72 bp | TCCAAGGAACCAGTTACCATAAACCTGAGCTCACTATaGCATGGACTCCTATTGAAAGTAGTCTCAGACAAG | + |
|
Preference number: 3 (lower is better) Translates to: SKEPVTINLSSL*HGLLLKVVSDK Trigger: CTTGTCTGAGACTACTTTCAATAGGAGTCCATGTCATAGTGAGCTCAGGTTTATGGTAACTGGTTCCTTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR CCA 72 bp | AAAGTAGTCTCAGACAAGAAAACTTTGGGCAAAGCATaGAGGCTTTTACCCATTACCTCAACACTAGAGAGG | + |
|
Preference number: 3 (lower is better) Translates to: KVVSDKKTLGKA*RLLPITSTLER Trigger: CCTCTCTAGTGTTGAGGTAATGGGTAAAAGCCTCCATGCTTTGCCCAAAGTTTTCTTGTCTGAGACTACTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR CCA 72 bp | GGAACCAGTTACCATAAACCTGAGCTCACTATGACATaGACTCCTATTGAAAGTAGTCTCAGACAAGAAAAC | + |
|
Preference number: 3 (lower is better) Translates to: GTSYHKPELTMT*TPIESSLRQEN Trigger: GTTTTCTTGTCTGAGACTACTTTCAATAGGAGTCCATGTCATAGTGAGCTCAGGTTTATGGTAACTGGTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| 3UTR CCA 72 bp | GTACTCTGTAAGTGCTTTACAGACCTTAACTCACCCTaGGAGAGATGTGTAAGTTATCAATATACCTCTATC | + |
|
Preference number: 3 (lower is better) Translates to: VLCKCFTDLNSP*ERCVSYQYTSI Trigger: GATAGAGGTATATTGATAACTTACACATCTCTCCCAGGGTGAGTTAAGGTCTGTAAAGCACTTACAGAGTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CCA 90 bp | ACTGAGATGTGGGACAGGGAGGGCCAGCAGGTACCACAGGAAGAACTAGCCCATAGCCTGGCAGCCAGCTaGGCTCTCTCCTTCCCCACC | + |
|
Preference number: 4 (lower is better) Translates to: TEMWDREGQQVPQEELAHSLAAS*ALSFPT Trigger: GGTGGGGAAGGAGAGAGCCCAGCTGGCTGCCAGGCT...ATGGGCTAGTTCTTCCTGTGGTACCTGCTGGCCCTCCCTGTCCCACATCTCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CCA 90 bp | ACTGAGATGTGGGACAGGGAGGGCCAGCAGGTACCACAGGAAGAACTAGCCCATGCAGCCAAGACCCTGTaGAGCACACCCAGGGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: TEMWDREGQQVPQEELAHAAKTL*STPRAG Trigger: TCCTGCCCTGGGTGTGCTCCACAGGGTCTTGGCTGC...ATGGGCTAGTTCTTCCTGTGGTACCTGCTGGCCCTCCCTGTCCCACATCTCAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS-3UTR TCA 90 bp | AATCCAAAGTCATCCCCAGATACAGAGGAGGGTGACAAGAGGAAAAGAAATAGGCTCCCGGGCTGGACCTaGGTGCCTGAGGGAGCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: NPKSSPDTEEGDKRKRNRLPGWT*VPEGAG Trigger: CCCTGCTCCCTCAGGCACTCAGGTCCAGCCCGGGAG...CCTATTTCTTTTCCTCTTGTCACCCTCCTCTGTATCTGGGGATGACTTTGGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR TCA 90 bp | TGGTGTCCTTTGACCTTAAGGAAGCTCTTCACTGAGATGTGGGACAGGGAGGGCTGGAGGGCTCCTCCATaGCAGAGGAGGAAGGCAATT | + |
|
Preference number: 4 (lower is better) Translates to: WCPLTLRKLFTEMWDREGWRAPP*QRRKAI Trigger: AATTGCCTTCCTCCTCTGTCATGGAGGAGCCCTCCA...GCCCTCCCTGTCCCACATCTCAGTGAAGAGCTTCCTTAAGGTCAAAGGACACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS-3UTR GCA 90 bp | GAGATGTGGGACAGGGAGGGCCAGCAGGTACCACAGGAAGAACTAGCCCATATACTTCACTCTGGATGTTaGCATCTGAGCTGCTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: EMWDREGQQVPQEELAHILHSGC*HLSCWR Trigger: CCTCCAGCAGCTCAGATGGCAACATCCAGAGTGAAG...TATATGGGCTAGTTCTTCCTGTGGTACCTGCTGGCCCTCCCTGTCCCACATCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CCA 90 bp | GAAGCCAATCTGTGCCACATAATGAGAATCTGTAATCTCCCCACCCCTCCAAAACCGTCAGGTGCAGCCTaGCAGCCAGCTGGGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: EANLCHIMRICNLPTPPKPSGAA*QPAGLS Trigger: AGAGAGCCCAGCTGGCTGCCAGGCTGCACCTGACGG...TTTTGGAGGGGTGGGGAGATTACAGATTCTCATTATGTGGCACAGATTGGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR TCA 90 bp | CCAAAGTCATCCCCAGATACAGAGGAGGGTGACAAGAGGAAAAGAAATAGGGTTCTGGACCTGAGTGCCTaGGGGAGCAGGGCTGGACAT | + |
|
Preference number: 4 (lower is better) Translates to: PKSSPDTEEGDKRKRNRVLDLSA*GSRAGH Trigger: ATGTCCAGCCCTGCTCCCTCAGGCACTCAGGTCCAG...AACCCTATTTCTTTTCCTCTTGTCACCCTCCTCTGTATCTGGGGATGACTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR TCA 90 bp | CCAAAGTCATCCCCAGATACAGAGGAGGGTGACAAGAGGAAAAGAAATAGGGTTAGGCCCTGCTGGTGGTaGGTGACATTCAGTCCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PKSSPDTEEGDKRKRNRVRPCWW*VTFSPG Trigger: GCCCGGACTGAATGTCACTCACCACCAGCAGGGCCT...AACCCTATTTCTTTTCCTCTTGTCACCCTCCTCTGTATCTGGGGATGACTTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR TCA 90 bp | CTAGCCCATATAACTAAAGCCTCTTGCTCGGTCCTTAACTGCCAATTCCCAACTAGGCCCTGCTGGTGGTaGGTGACATTCAGTCCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LAHITKASCSVLNCQFPTRPCWW*VTFSPG Trigger: GCCCGGACTGAATGTCACTCACCACCAGCAGGGCCT...AGTTGGGAATTGGCAGTTAAGGACCGAGCAAGAGGCTTTAGTTATATGGGCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174469.2 |
||
| CDS-3UTR CCA 90 bp | CAGCAGGTACCACAGGAAGAACTAGCCCATATAACTAAAGCCTCTTGCTCGGTCTGGGTCTCGCCAGGATaGCCTCGACAGAGAAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: QQVPQEELAHITKASCSVWVSPG*PRQRRM Trigger: CATCCTTCTCTGTCGAGGCCATCCTGGCGAGACCCA...GACCGAGCAAGAGGCTTTAGTTATATGGGCTAGTTCTTCCTGTGGTACCTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS-3UTR CCA 90 bp | TACATTTGGTGTCCTTTGACCTTAAGGAAGCTCTTCACTGAGATGTGGGACAGGGCAGCCAAGACCCTGTaGAGCACACCCAGGGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: YIWCPLTLRKLFTEMWDRAAKTL*STPRAG Trigger: TCCTGCCCTGGGTGTGCTCCACAGGGTCTTGGCTGC...CCTGTCCCACATCTCAGTGAAGAGCTTCCTTAAGGTCAAAGGACACCAAATGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS-3UTR GCA 90 bp | TCAAGGCTGCCTATTCTCCATAGCCAGGCCAGGAGAGAGCTGATGAATCCATCTCAGGTTGTGCTGCTTTaGAAACACCTTCTCCAACTC | + |
|
Preference number: 4 (lower is better) Translates to: SRLPILHSQARRELMNPSQVVLL*KHLLQL Trigger: GAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTG...AGATGGATTCATCAGCTCTCTCCTGGCCTGGCTATGGAGAATAGGCAGCCTTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CCA 90 bp | GAAGAACTAGCCCATATAACTAAAGCCTCTTGCTCGGTCCTTAACTGCCAATTCTGGGTCTCGCCAGGATaGCCTCGACAGAGAAGGATG | + |
|
Preference number: 4 (lower is better) Translates to: EELAHITKASCSVLNCQFWVSPG*PRQRRM Trigger: CATCCTTCTCTGTCGAGGCCATCCTGGCGAGACCCA...GAATTGGCAGTTAAGGACCGAGCAAGAGGCTTTAGTTATATGGGCTAGTTCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174469.2 |
||
| CDS-3UTR TCA 90 bp | AGGAATCCAAAGTCATCCCCAGATACAGAGGAGGGTGACAAGAGGAAAAGAAATTGGAGGGCTCCTCCATaGCAGAGGAGGAAGGCAATT | + |
|
Preference number: 4 (lower is better) Translates to: RNPKSSPDTEEGDKRKRNWRAPP*QRRKAI Trigger: AATTGCCTTCCTCCTCTGTCATGGAGGAGCCCTCCA...ATTTCTTTTCCTCTTGTCACCCTCCTCTGTATCTGGGGATGACTTTGGATTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR GCA 90 bp | CAAAGTCATCCCCAGATACAGAGGAGGGTGACAAGAGGAAAAGAAATAGGGTTGCCCACCAGGTTGTGCTaGTTTGCAAACACCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: QSHPQIQRRVTRGKEIGLPTRLC*FANTFS Trigger: GGAGAAGGTGTTTGCAAAGCAGCACAACCTGGTGGG...CAACCCTATTTCTTTTCCTCTTGTCACCCTCCTCTGTATCTGGGGATGACTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CCA 90 bp | ATTACCTCAACACTAGAGAGGTTAAAACAGGAGAATTTCCATGCATTTGAAGCCTCGGCGCGGGACAACTaGGGAAACAGCTCCCGGACA | + |
|
Preference number: 4 (lower is better) Translates to: ITSTLERLKQENFHAFEASARDN*GNSSRT Trigger: TGTCCGGGAGCTGTTTCCCCAGTTGTCCCGCGCCGA...GGCTTCAAATGCATGGAAATTCTCCTGTTTTAACCTCTCTAGTGTTGAGGTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR GCA 90 bp | GACCTTAACTCACCCTGGGAGAGATGTGTAAGTTATCAATATACCTCTATCCGCTTCCCCACCAGGTTGTaGTGCTTTGCAAACACCTTC | + |
|
Preference number: 4 (lower is better) Translates to: DLNSPWERCVSYQYTSIRFPTRL*CFANTF Trigger: GAAGGTGTTTGCAAAGCAGCACAACCTGGTGGGGAA...GCGGATAGAGGTATATTGATAACTTACACATCTCTCCCAGGGTGAGTTAAGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CCA 90 bp | GAAGAACTAGCCCATATAACTAAAGCCTCTTGCTCGGTCCTTAACTGCCAATTCTTCACCCTGCGATTTTaGAACCAGATCCTCACCTGT | + |
|
Preference number: 4 (lower is better) Translates to: EELAHITKASCSVLNCQFFTLRF*NQILTC Trigger: ACAGGTGAGGATCTGGTTCCAAAATCGCAGGGTGAA...GAATTGGCAGTTAAGGACCGAGCAAGAGGCTTTAGTTATATGGGCTAGTTCTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174469.2 |
||
| CDS-3UTR TCA 90 bp | TGCTTGATTGTCCAAGTACATTTGGTGTCCTTTGACCTTAAGGAAGCTCTTCACAGTTTTTGCTGCTTCTaGTACTTCACCCTGCGATTT | + |
|
Preference number: 4 (lower is better) Translates to: CLIVQVHLVSFDLKEALHSFCCF*YFTLRF Trigger: AAATCGCAGGGTGAAGTATCAGAAGCAGCAAAAACT...GTGAAGAGCTTCCTTAAGGTCAAAGGACACCAAATGTACTTGGACAATCAAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS-3UTR GCA 90 bp | GTGACAAGAGGAAAAGAAATAGGGTTGAAATGCAGGAAACTTTGTTTGAAGCGAAACTCTTGCAGCTGCTaGAAGTTAAACGTTGTGCGA | + |
|
Preference number: 4 (lower is better) Translates to: VTRGKEIGLKCRKLCLKRNSCSC*KLNVVR Trigger: TCGCACAACGTTTAACTTGCAGCAGCTGCAAGAGTT...TCGCTTCAAACAAAGTTTCCTGCATTTCAACCCTATTTCTTTTCCTCTTGTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS CCA 90 bp | GCGGGTAGACGCCCACGCTCAGGTAGGCAGGCAGCCAAGACCCTGTaGAGCACACCCAGGGCAGGACCCCGTACTGCGACACCGCACCGA | + |
|
Preference number: 5 (lower is better) Translates to: AGRRPRSGRQAAKTL*STPRAGPRTATPHR Trigger: TCGGTGCGGTGTCGCAGTACGGGGTCCTGCCCTGGGTGTGCTCCACAGGGTCTTGGCTGCCTGCCTACCTGAGCGTGGGCGTCTACCCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS GCA 90 bp | GGCAGCCAAGACCCTGTGGAGCACACCCAGGGCAGGACCCCGTACTaGGACACCGCACCGAGGAGGTTCAGACTGGTGCAGGTAGAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GSQDPVEHTQGRTPY*DTAPRRFRLVQVES Trigger: GCTCTCTACCTGCACCAGTCTGAACCTCCTCGGTGCGGTGTCGCAGTACGGGGTCCTGCCCTGGGTGTGCTCCACAGGGTCTTGGCTGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS CCA 90 bp | GCAGAGAGGTGGCCGCCAGCTCTCGGGTCTTGGGTCTCGCCAGGATaGCCTCGACAGAGAAGGATGACTCCAGGCGTCCCCGAGCTAGTC | + |
|
Preference number: 5 (lower is better) Translates to: AERWPPALGSWVSPG*PRQRRMTPGVPELV Trigger: GACTAGCTCGGGGACGCCTGGAGTCATCCTTCTCTGTCGAGGCCATCCTGGCGAGACCCAAGACCCGAGAGCTGGCGGCCACCTCTCTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS TCA 90 bp | TTTGGAACCAGATCCTCACCTGTGAGCCTGAGGCCCTGCTGGTGGTaGGTGACATTCAGTCCGGGCACGCAGGACATGGAGCACAGCGGG | + |
|
Preference number: 5 (lower is better) Translates to: FGTRSSPVSLRPCWW*VTFSPGTQDMEHSG Trigger: CCCGCTGTGCTCCATGTCCTGCGTGCCCGGACTGAATGTCACTCACCACCAGCAGGGCCTCAGGCTCACAGGTGAGGATCTGGTTCCAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174469.2 |
||
| CDS-3UTR CAA 90 bp | TGTAATCCCAGCACGTGGGAAGTAGAGGGTCAGGAATCCAAAGTCATCCCCAGAGCCAGCTCTCGGGTCTaGGGTCTCGCCAGGATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: CNPSTWEVEGQESKVIPRASSRV*GLARMA Trigger: GGCCATCCTGGCGAGACCCAAGACCCGAGAGCTGGC...TCTGGGGATGACTTTGGATTCCTGACCCTCTACTTCCCACGTGCTGGGATTACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS GCA 90 bp | AGCCTGGCAGCCAGCTGGGCTCTCTCCTTCCCCACCAGGTTGTGCTaGTTTGCAAACACCTTCTCCAACTCTTGCAGCTGCTGCAAGTTA | + |
|
Preference number: 5 (lower is better) Translates to: SLAASWALSFPTRLC*FANTFSNSCSCCKL Trigger: TAACTTGCAGCAGCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTGGTGGGGAAGGAGAGAGCCCAGCTGGCTGCCAGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CAA 90 bp | CCTTGCTTGATTGTCCAAGTACATTTGGTGTCCTTTGACCTTAAGGAAGCTCTTGCCAGCTCTCGGGTCTaGGGTCTCGCCAGGATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: PCLIVQVHLVSFDLKEALASSRV*GLARMA Trigger: GGCCATCCTGGCGAGACCCAAGACCCGAGAGCTGGC...AAGAGCTTCCTTAAGGTCAAAGGACACCAAATGTACTTGGACAATCAAGCAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS TCA 90 bp | ACTGCCAATTCCCAACTCAGCATCTTCACTCTGGATGTTGCCATCTaGGCTGCTGGAGGGCTCCTCCATGACAGAGGAGGAAGGCAATTT | + |
|
Preference number: 5 (lower is better) Translates to: TANSQLSIFTLDVAI*AAGGLLHDRGGRQF Trigger: AAATTGCCTTCCTCCTCTGTCATGGAGGAGCCCTCCAGCAGCTCAGATGGCAACATCCAGAGTGAAGATGCTGAGTTGGGAATTGGCAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CAA 90 bp | GAATCCATCTTCAGGGCAGAGCTGGGACAGCGTCTATCCCATAAACCTCACCAGCCAGGTTGTGCTGCTTaGCAAACACCTTCTCCAACT | + |
|
Preference number: 5 (lower is better) Translates to: ESIFRAELGQRLSHKPHQPGCAA*QTPSPT Trigger: AGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTGG...CTGGTGAGGTTTATGGGATAGACGCTGTCCCAGCTCTGCCCTGAAGATGGATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CAA 90 bp | CACACTGTGATGCTGATTCAAGGCTGCCTATTCTCCATAGCCAGGCCAGGAGAGCACCTTCTCCAACTCTaGCAGCTGCTGCAAGTTAAA | + |
|
Preference number: 5 (lower is better) Translates to: HTVMLIQGCLFSIARPGEHLLQL*QLLQVK Trigger: TTTAACTTGCAGCAGCTGCAAGAGTTGGAGAAGGTG...CTCTCCTGGCCTGGCTATGGAGAATAGGCAGCCTTGAATCAGCATCACAGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS TCA 90 bp | CTTCACTCTGGATGTTGCCATCTGAGCTGCTGGAGGGCTCCTCCATaGCAGAGGAGGAAGGCAATTTCAGTTTTTGCTGCTTCTGATACT | + |
|
Preference number: 5 (lower is better) Translates to: LHSGCCHLSCWRAPP*QRRKAISVFAASDT Trigger: AGTATCAGAAGCAGCAAAAACTGAAATTGCCTTCCTCCTCTGTCATGGAGGAGCCCTCCAGCAGCTCAGATGGCAACATCCAGAGTGAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS GCA 90 bp | AGGTTGTGCTGCTTTGCAAACACCTTCTCCAACTCTTGCAGCTGCTaGAAGTTAAACGTTGTGCGAACCCTCTTTGTGTGTCTCTCGGTC | + |
|
Preference number: 5 (lower is better) Translates to: RLCCFANTFSNSCSC*KLNVVRTLFVCLSV Trigger: GACCGAGAGACACACAAAGAGGGTTCGCACAACGTTTAACTTGCAGCAGCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS GCA 90 bp | ACCAGGTTGTGCTGCTTTGCAAACACCTTCTCCAACTCTTGCAGCTaGTGCAAGTTAAACGTTGTGCGAACCCTCTTTGTGTGTCTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: TRLCCFANTFSNSCS*CKLNVVRTLFVCLS Trigger: CGAGAGACACACAAAGAGGGTTCGCACAACGTTTAACTTGCAGCAGCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS GCA 90 bp | TTCCCCACCAGGTTGTGCTGCTTTGCAAACACCTTCTCCAACTCTTaGAGCTGCTGCAAGTTAAACGTTGTGCGAACCCTCTTTGTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: FPTRLCCFANTFSNS*SCCKLNVVRTLFVC Trigger: ACACACAAAGAGGGTTCGCACAACGTTTAACTTGCAGCAGCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTGGTGGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS-3UTR CAA 90 bp | CCAAAGTCATCCCCAGATACAGAGGAGGGTGACAAGAGGAAAAGAAATAGGGTTCTTCACCCTGCGATTTaGGAACCAGATCCTCACCTG | + |
|
Preference number: 5 (lower is better) Translates to: PKSSPDTEEGDKRKRNRVLHPAI*EPDPHL Trigger: CAGGTGAGGATCTGGTTCCAAAATCGCAGGGTGAAG...AACCCTATTTCTTTTCCTCTTGTCACCCTCCTCTGTATCTGGGGATGACTTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS GCA 72 bp | GACCCTGTGGAGCACACCCAGGGCAGGACCCCGTACTaGGACACCGCACCGAGGAGGTTCAGACTGGTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: DPVEHTQGRTPY*DTAPRRFRLVQ Trigger: CTGCACCAGTCTGAACCTCCTCGGTGCGGTGTCGCAGTACGGGGTCCTGCCCTGGGTGTGCTCCACAGGGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS CCA 72 bp | TGGCCGCCAGCTCTCGGGTCTTGGGTCTCGCCAGGATaGCCTCGACAGAGAAGGATGACTCCAGGCGTCCCC | + |
|
Preference number: 6 (lower is better) Translates to: WPPALGSWVSPG*PRQRRMTPGVP Trigger: GGGGACGCCTGGAGTCATCCTTCTCTGTCGAGGCCATCCTGGCGAGACCCAAGACCCGAGAGCTGGCGGCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS CCA 72 bp | AGAGCGGCAGAGAGGTGGCCGCCAGCTCTCGGGTCTTaGGTCTCGCCAGGATGGCCTCGACAGAGAAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: RAAERWPPALGS*VSPGWPRQRRM Trigger: CATCCTTCTCTGTCGAGGCCATCCTGGCGAGACCCAAGACCCGAGAGCTGGCGGCCACCTCTCTGCCGCTCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS CAA 72 bp | GAGAGCGGCAGAGAGGTGGCCGCCAGCTCTCGGGTCTaGGGTCTCGCCAGGATGGCCTCGACAGAGAAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: ESGREVAASSRV*GLARMASTEKD Trigger: ATCCTTCTCTGTCGAGGCCATCCTGGCGAGACCCAAGACCCGAGAGCTGGCGGCCACCTCTCTGCCGCTCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS CCA 72 bp | ACCAGATCCTCACCTGATTCTCCGTCAGGTGCAGCCTaGCAGCCAGCTGGGCTCTCTCCTTCCCCACCAGGT | + |
|
Preference number: 6 (lower is better) Translates to: TRSSPDSPSGAA*QPAGLSPSPPG Trigger: ACCTGGTGGGGAAGGAGAGAGCCCAGCTGGCTGCCAGGCTGCACCTGACGGAGAATCAGGTGAGGATCTGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS TCA 72 bp | AGATCCTCACCTGTGAGCCTGAGGCCCTGCTGGTGGTaGGTGACATTCAGTCCGGGCACGCAGGACATGGAG | + |
|
Preference number: 6 (lower is better) Translates to: RSSPVSLRPCWW*VTFSPGTQDME Trigger: CTCCATGTCCTGCGTGCCCGGACTGAATGTCACTCACCACCAGCAGGGCCTCAGGCTCACAGGTGAGGATCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174469.2 |
||
| CDS GCA 72 bp | GCAGCCAGCTGGGCTCTCTCCTTCCCCACCAGGTTGTaGTGCTTTGCAAACACCTTCTCCAACTCTTGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: AASWALSFPTRL*CFANTFSNSCS Trigger: GCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTGGTGGGGAAGGAGAGAGCCCAGCTGGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS CAA 72 bp | GCTGGGCTCTCTCCTTCCCCACCAGGTTGTGCTGCTTaGCAAACACCTTCTCCAACTCTTGCAGCTGCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: AGLSPSPPGCAA*QTPSPTLAAAA Trigger: TGCAGCAGCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTGGTGGGGAAGGAGAGAGCCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS TCA 72 bp | GGATGTTGCCATCTGAGCTGCTGGAGGGCTCCTCCATaGCAGAGGAGGAAGGCAATTTCAGTTTTTGCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: GCCHLSCWRAPP*QRRKAISVFAA Trigger: AGCAGCAAAAACTGAAATTGCCTTCCTCCTCTGTCATGGAGGAGCCCTCCAGCAGCTCAGATGGCAACATCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000089578.9 ENSMUST00000174469.2 |
||
| CDS CAA 90 bp | CTTCCCCACCAGGTTGTGCTGCTTTGCAAACACCTTCTCCAACTCTaGCAGCTGCTGCAAGTTAAACGTTGTGCGAACCCTCTTTGTGTG | + |
|
Preference number: 6 (lower is better) Translates to: LPHQVVLLCKHLLQL*QLLQVKRCANPLCV Trigger: CACACAAAGAGGGTTCGCACAACGTTTAACTTGCAGCAGCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTGGTGGGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||
| CDS CAA 72 bp | CAGGTTGTGCTGCTTTGCAAACACCTTCTCCAACTCTaGCAGCTGCTGCAAGTTAAACGTTGTGCGAACCCT | + |
|
Preference number: 6 (lower is better) Translates to: QVVLLCKHLLQL*QLLQVKRCANP Trigger: AGGGTTCGCACAACGTTTAACTTGCAGCAGCTGCAAGAGTTGGAGAAGGTGTTTGCAAAGCAGCACAACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089578.9 |
||