RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NOTCH3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038146

Ensembl transcript IDs: ENSMUST00000087723.5, ENSMUST00000235816.2

Found 415 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTaGAGCCCTAGTCATATCTGTGTACTCAGTACACAGAGTCCGGAT +
Preference number: 1 (lower is better)
Translates to: QGWLLGTYEGHILST*SPSHICVLSTQSPD
Trigger: ATCCGGACTCTGTGTACTGAGTACACAGATATGACTAGGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR TCA 90 bp AGGGTTGTACAGTGCAGGACCTGGGAATTCAGCTACAAAGGACTGTaGCCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATT +
Preference number: 1 (lower is better)
Translates to: RVVQCRTWEFSYKGL*PGAILQKQPKNISI
Trigger: AATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCCAGGTCCTGCACTGTACAACCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR TCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGGGGGTCTGGGCTGGTaGCCAACTTGGTCACACTAC +
Preference number: 2 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGGGLGW*PTWSHY
Trigger: GTAGTGTGACCAAGTTGGTCACCAGCCCAGACCCCC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
63% GC, longest homopolymer 10 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR GCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTCCCCAGGGGAGGGTGTaGCCAAGGCTGGCTACTTGG +
Preference number: 2 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSPQGRV*PRLATW
Trigger: CCAAGTAGCCAGCCTTGGGCACACCCTCCCCTGGGG...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR CCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCGGAAGACTGGGGGTCTaGGCTGGTGACCAACTTGGT +
Preference number: 2 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSGRLGV*AGDQLG
Trigger: ACCAAGTTGGTCACCAGCCCAGACCCCCAGTCTTCC...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR CCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCGAGGTGCAGGAAGGCTaGGACAGAGAGAAAGGGATG +
Preference number: 2 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSEVQEG*DREKGM
Trigger: CATCCCTTTCTCTCTGTCCCAGCCTTCCTGCACCTC...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR TCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGACTCTTGTCAGAGTGTaGGACAATGAGAAGCAGAAA +
Preference number: 2 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGTLVRV*DNEKQK
Trigger: TTTCTGCTTCTCATTGTCTCACACTCTGACAAGAGT...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR TCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATCCAGGCCCTAAAAGGTaGGCCAGGCTCTGGGAGGTG +
Preference number: 2 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHPGPKR*ARLWEV
Trigger: CACCTCCCAGAGCCTGGCTCACCTTTTAGGGCCTGG...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR CCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCAGGGGGCCAAGGTGGTaGAAGGTCAGCCCCTACCCA +
Preference number: 2 (lower is better)
Translates to: KTFLLGRLSQENNRKRESRGPRW*KVSPYP
Trigger: TGGGTAGGGGCTGACCTTCCACCACCTTGGCCCCCT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR CCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATGGGTGTGCCCAAGGCTaGCTACTTGGTACATACGAG +
Preference number: 2 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHGCAQG*LLGTYE
Trigger: CTCGTATGTACCAAGTAGCCAGCCTTGGGCACACCC...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR GCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTAACGTCTTATCTGGAATaGAGTGAAGTGAGGAAGGGG +
Preference number: 2 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLTSYLE*SEVRKG
Trigger: CCCCTTCCTCACTTCACTGCATTCCAGATAAGACGT...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR-3UTR GCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACAATTAGAAGTGGAATaGATACAAAATACATCTCCC +
Preference number: 2 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLQLEVE*IQNTSP
Trigger: GGGAGATGTATTTTGTATGCATTCCACTTCTAATTG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR TCA 72 bp GCCAGGCTCTGGGAGGTGAGCCTGGAGTTGAGGCTTTaGGCAGACAAGACCCCTTTCCCAGTGAGTCTACAC +
Preference number: 3 (lower is better)
Translates to: ARLWEVSLELRL*ADKTPFPVSLH
Trigger: GTGTAGACTCACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAGAGCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR CCA 72 bp AGTCATATCTGTGTACTCAGTACACAGAGTCCGGATTaGCCAAACGGGCCCACAGACTCAGCCCCACGGGGG +
Preference number: 3 (lower is better)
Translates to: SHICVLSTQSPD*PNGPTDSAPRG
Trigger: CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACTGAGTACACAGATATGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR CCA 72 bp CTACTTGGTACATACGAGGGCCACATACTCAGTACGTaGAGCCCTAGTCATATCTGTGTACTCAGTACACAG +
Preference number: 3 (lower is better)
Translates to: LLGTYEGHILST*SPSHICVLSTQ
Trigger: CTGTGTACTGAGTACACAGATATGACTAGGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR TCA 72 bp CAGTGCAGGACCTGGGAATTCAGCTACAAAGGACTGTaGCCAGGTGCCATATTACAAAAACAGCCTAAAAAC +
Preference number: 3 (lower is better)
Translates to: QCRTWEFSYKGL*PGAILQKQPKN
Trigger: GTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCCAGGTCCTGCACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR GCA 72 bp AGAACAACAGGAAGAGGGAGAGCCACTCCCACCTTCTaGCCTGTATTTACAATTAGAAGTGGAATGCATACA +
Preference number: 3 (lower is better)
Translates to: RTTGRGRATPTF*PVFTIRSGMHT
Trigger: TGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCCTCTTCCTGTTGTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGCACATGCCCCTCCAGTaGAGCCAGGTGGGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGHMPLQ*SQVGRC
Trigger: GCACCTGCCCACCTGGCTTCACTGGAGGGGCATGTG...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGATCCTGCTGGCATCGTaGGCCTTGCCAGCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGILLAS*ALPAWG
Trigger: CCCCCAGGCTGGCAAGGCCCACGATGCCAGCAGGAT...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGTGGCATCGTGGGCCTTaGCAGCCTGGGGGACAGGAA +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGWHRGP*QPGGQE
Trigger: TTCCTGTCCCCCAGGCTGGCAAGGCCCACGATGCCA...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGTTGGTGCAGGTACCATaGGGGCCGCAGGGTGAGGCA +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGLVQVP*GPQGEA
Trigger: TGCCTCACCCTGCGGCCCCCATGGTACCTGCACCAA...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGTGGCAGGAGCCACCATaGAGGCACGGGTTGGGGTCA +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGWQEPP*RHGLGS
Trigger: TGACCCCAACCCGTGCCTCCATGGTGGCTCCTGCCA...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGTGAAGGAGGCCACGTaGTCAGTACAGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGVKEAT*SVQVPG
Trigger: CCCTGGCACCTGTACTGATCACGTGGCCTCCTTCAC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGGGTCAGACTCACAGTaGCCTCCGTGCTCACAGAGG +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGGSDSQ*PPCSQR
Trigger: CCTCTGTGAGCACGGAGGCCACTGTGAGTCTGACCC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
63% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGCATGGGATACCCACTaGGCACTGCAGCTCTCGGCA +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGAWDTH*ALQLSA
Trigger: TGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCGGGCCGGGACCTCGCTaGCACAGTCCAGCCCATCCC +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSGPGPR*HSPAHP
Trigger: GGGATGGGCTGGACTGTGCCAGCGAGGTCCCGGCCC...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTGCCATCCGGCCCCACTaGGCAGGGGGCACCATGAAC +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSAIRPH*AGGTMN
Trigger: GTTCATGGTGCCCCCTGCTCAGTGGGGCCGGATGGC...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGACACTGACTCCCAGTaGAGCCCTCCCGGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGDTDSQ*SPPGRC
Trigger: GCACCTGCCGGGAGGGCTTCACTGGGAGTCAGTGTC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGGCAGCCTGTCCAAGTaGTCTGTGATCTCCCGGTTG +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGGSLSK*SVISRL
Trigger: CAACCGGGAGATCACAGATCACTTGGACAGGCTGCC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTCTGGGGCTCCTGGGTTaGGCAACTGGGGTCCCGGAG +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSLGLLG*ATGVPE
Trigger: CTCCGGGACCCCAGTTGCTCAACCCAGGAGCCCCAG...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGCCCTCAAAGCCCTCTaGACAGCGACACTCATAGCC +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGALKAL*TATLIA
Trigger: GGCTATGAGTGTCGCTGTGCAGAGGGCTTTGAGGGC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGACGCACAATGTCCTGGTaGAGCCGCTCCTGGGCCACG +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGRTMSW*SRSWAT
Trigger: CGTGGCCCAGGAGCGGCTGCACCAGGACATTGTGCG...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTGCCCCAGCCCGGTCTTaGCAGGTGGCCTCCTGCTCT +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSAPARS*QVASCS
Trigger: AGAGCAGGAGGCCACCTGGCAAGACCGGGCTGGGGC...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGACAGCAGTGGCAGCAGTaGCACGCTCTGCTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGQQWQQ*HALLWG
Trigger: GCCCCAGAGCAGAGCGTGCCACTGCTGCCACTGCTG...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGATCCAGCAGCAGCTTaGCAGCCTCATAGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGDPAAA*QPHSCP
Trigger: AGGGCAGCTATGAGGCTGCCAAGCTGCTGCTGGATC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
62% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGGTGGGGGCCGCTCTTaGGGAGAAACTGGGGCTCCT +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGGGGRS*GETGAP
Trigger: AGGAGCCCCAGTTTCTCCCCAAGAGCGGCCCCCACC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCGAGCAGGGGGCACCATaGACACAGGGCCTGCTGACG +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPEQGAP*TQGLLT
Trigger: CGTCAGCAGGCCCTGTGTTCATGGTGCCCCCTGCTC...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTCAGCGACCCCCATTCTaGCAGGGTGCCTGGCTGCAC +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSQRPPF*QGAWLH
Trigger: GTGCAGCCAGGCACCCTGTCAGAATGGGGGTCGCTG...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGGCAAGGCTGGGCCGTaGAGGGATCCACCTCGTGTT +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGGKAGP*RDPPRV
Trigger: AACACGAGGTGGATCCCTGCACGGCCCAGCCTTGCC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCGTCCTCAGGCTCCTCTaGACCCATGCCCGGCTCCTC +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPVLRLL*THARLL
Trigger: GAGGAGCCGGGCATGGGTGCAGAGGAGCCTGAGGAC...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGACCAGCCTGGCAGGGCTaGGACTCACAGGCATCTGGA +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGPAWQG*DSQASG
Trigger: TCCAGATGCCTGTGAGTCCCAGCCCTGCCAGGCTGG...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCAGGTGCCACCAGCCTaGCAGGGCTGGGACTCACAG +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPQVPPA*QGWDSQ
Trigger: CTGTGAGTCCCAGCCCTGCCAGGCTGGTGGCACCTG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGGCCTCCATAACCAGGTaGACAGGCACAGGTGAAGGA +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGASITR*TGTGEG
Trigger: TCCTTCACCTGTGCCTGTCCACCTGGTTATGGAGGC...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAAGGAAGGAAGGCCCCTaGTGGGCAGAGCAATGGCCC +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGRKEGP*WAEQWP
Trigger: GGGCCATTGCTCTGCCCACCAGGGGCCTTCCTTCCT...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTGCTGGCCCAGTGCTCTaGGGACTCAGGAGACGGGGT +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSAGPVL*GLRRRG
Trigger: ACCCCGTCTCCTGAGTCCCCAGAGCACTGGGCCAGC...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCGGCATGGCTGGCGATaGGCTCTTCCACCATGCCCT +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPRHGWR*ALPPCP
Trigger: AGGGCATGGTGGAAGAGCTCATCGCCAGCCATGCCG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCAAGCAGGGGGCCCACTaGAAGGCCGTGGTGAGTCCA +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSKQGAH*KAVVSP
Trigger: TGGACTCACCACGGCCTTTCAGTGGGCCCCCTGCTT...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGCATTCCGGCAGGGAGTaGTTGCACACTCATCCACAT +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGHSGRE*LHTHPH
Trigger: ATGTGGATGAGTGTGCAAGCACTCCCTGCCGGAATG...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCATCACTGGTGCAGGTaGCACCAGCCTGGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPHHWCR*HQPGRA
Trigger: AGCCCTGCCAGGCTGGTGGCACCTGCACCAGTGATG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCAAGGGTCTTCCAGCTaGCACCGCTCACCCACCCAG +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPQGSSS*HRSPTQ
Trigger: CTGGGTGGGTGAGCGGTGCCAGCTGGAAGACCCTTG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCGTCATAGAGGCAGGCTaGAGAGCTGCAGGCCGGGTC +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSVIEAG*RAAGRV
Trigger: GACCCGGCCTGCAGCTCTCCAGCCTGCCTCTATGAC...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR CAA 72 bp CTGACCCCAGGGGAGGGTGTGCCCAAGGCTGGCTACTaGGTACATACGAGGGCCACATACTCAGTACGTGGA +
Preference number: 4 (lower is better)
Translates to: LTPGEGVPKAGY*VHTRATYSVRG
Trigger: TCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGCACACCCTCCCCTGGGGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGGCCACCCAGTAGGTTaGAGCAGGTACCCCCATTGT +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGGHPVG*SRYPHC
Trigger: ACAATGGGGGTACCTGCTTCAACCTACTGGGTGGCC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGACACATGGACCCACTaGATCCTGATGGGCAGGTGC +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGDTWTH*ILMGRC
Trigger: GCACCTGCCCATCAGGATTCAGTGGGTCCATGTGTC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCGTGGACAGGCACAGGTaGAGGAGGCCACGTGATCAG +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSVDRHR*RRPRDQ
Trigger: CTGATCACGTGGCCTCCTTCACCTGTGCCTGTCCAC...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCGAGGCAGAAGAACTGTaGGGACCAGAACCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPEAEEL*GPEPLG
Trigger: CCCGAGGGGTTCTGGTCCTCACAGTTCTTCTGCCTC...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAAATGATCCTGGGCGTTaGTGTCCGCCCCAGCATCCA +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGNDPGR*CPPQHP
Trigger: TGGATGCTGGGGCGGACACCAACGCCCAGGATCATT...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCACCCGTCCAGCCATTaGCACATACACAGCTGTGGC +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSHPSSH*HIHSCG
Trigger: GCCACAGCTGTGTATGTGTCAATGGCTGGACGGGTG...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCTGCTCTGCCTACAGGTaGCACCATTACGACACGGGG +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPCSAYR*HHYDTG
Trigger: CCCCGTGTCGTAATGGTGGCACCTGTAGGCAGAGCA...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCCGGCAGGGAGTGCTTaGACACTCATCCACATCCAG +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPPAGSA*TLIHIQ
Trigger: CTGGATGTGGATGAGTGTGCAAGCACTCCCTGCCGG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCAGGGAACCAGAGGGTaGTGTGTTCTCGCTTTCGCC +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPQGTRG*CVLAFA
Trigger: GGCGAAAGCGAGAACACAGCACCCTCTGGTTCCCTG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCTGGCAGGTGGCCCCATaGAAACACACGGCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSWQVAP*KHTAVA
Trigger: TGCTACAGCCGTGTGTTTCCATGGGGCCACCTGCCA...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTAATTCCCTGGCAGGTTaGTGCAGGTACCATGGGGGC +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSNSLAG*CRYHGG
Trigger: GCCCCCATGGTACCTGCACCAACCTGCCAGGGAATT...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGCACCTGAAATTCCCTaGCAGGTTGGTGCAGGTACC +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGAPEIP*QVGAGT
Trigger: GGTACCTGCACCAACCTGCCAGGGAATTTCAGGTGC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGCCACTCCATCCAGGTaGACAAATGCAGTAAGCCCC +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGATPSR*TNAVSP
Trigger: GGGGCTTACTGCATTTGTCCACCTGGATGGAGTGGC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGACATTGGCACAAGAATaGGCCCTGTGTATTCACACA +
Preference number: 4 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGTLAQE*ALCIHT
Trigger: TGTGTGAATACACAGGGCTCATTCTTGTGCCAATGT...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCTGCAGTAGAGCCATCTaGCATTCGGGCATCCAGGTC +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSCSRAI*HSGIQV
Trigger: GACCTGGATGCCCGAATGGCAGATGGCTCTACTGCA...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCATTCAAATCCTGGGTaGGTGGGGTTGCAGATGCCC +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPHSNPG*VGLQMP
Trigger: GGGCATCTGCAACCCCACCCACCCAGGATTTGAATG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGACAGACCTGTGTATCCTaGGGGACAGTTACAGCGGAA +
Preference number: 4 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGQTCVS*GTVTAE
Trigger: TTCCGCTGTAACTGTCCCCCAGGATACACAGGTCTG...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAACGCTCGCGGGCACCGTaGCTCCTCGGGGACCTCAGG +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQRSRAP*LLGDLR
Trigger: CCTGAGGTCCCCGAGGAGCCACGGTGCCCGCGAGCG...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATCCTGGGTTGAGCAACTaGGGTCCCGGAGCCAGGGGC +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHPGLSN*GPGARG
Trigger: GCCCCTGGCTCCGGGACCCCAGTTGCTCAACCCAGG...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTCTCTTGGGGAGAAACTaGGGCTCCTGGGTTGAGCAA +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSLLGRN*GSWVEQ
Trigger: TTGCTCAACCCAGGAGCCCCAGTTTCTCCCCAAGAG...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
3UTR CAA 72 bp AGCCAGGCTCTGGGAGGTGAGCCTGGAGTTGAGGCTTaGAGCAGACAAGACCCCTTTCCCAGTGAGTCTACA +
Preference number: 4 (lower is better)
Translates to: SQALGGEPGVEA*SRQDPFPSEST
Trigger: TGTAGACTCACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAGAGCCTGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTCGGAGAGACACTCATTaGCATCAGTCTCACAGCGAG +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSRRDTH*HQSHSE
Trigger: CTCGCTGTGAGACTGATGTCAATGAGTGTCTCTCCG...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCGACACGTGGCCTGGTTaGGGCAGGGCCCGGAGAGAC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESDTWPG*GRARRD
Trigger: GTCTCTCCGGGCCCTGCCGCAACCAGGCCACGTGTC...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCTTCGCTCACACAAAGTaGCCTCAAAGCCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPFAHTK*PQSPLH
Trigger: GTGCAGAGGGCTTTGAGGGCACTTTGTGTGAGCGAA...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACACCCCCATCTGGGCTaGGGCCTCCGTGCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLHPHLG*GLRAGQ
Trigger: CTGCCCTGCACGGAGGCCGCAGCCCAGATGGGGGTG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTAGCGGCCCTTGTCTATaGACTTTCCACCTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSSGPCL*TFHLPD
Trigger: GTCAGGAAGGTGGAAAGTGCATAGACAAGGGCCGCT...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATCATGGCCTGGCCACGTaGGTCCAAGCGGAAGCGCAG +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHHGLAT*VQAEAQ
Trigger: CTGCGCTTCCGCTTGGACGCACGTGGCCAGGCCATG...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATCCCTGCCACCAGCAGTaGCAGCAGTGGCACGCTCTG +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHPCHQQ*QQWHAL
Trigger: CAGAGCGTGCCACTGCTGCCACTGCTGGTGGCAGGG...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCATGCATCATCCAGATaGCACAAGAGGCCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPHASSR*HKRPVF
Trigger: GAAGACAGGCCTCTTGTGTCATCTGGATGATGCATG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTCACAGTCATAACGGTTaGTGCCATCACGGCAAACTC +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSHSHNG*CHHGKL
Trigger: GAGTTTGCCGTGATGGCATCAACCGTTATGACTGTG...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATAGGCAGTCCCGAGTATaGGCTGCATGGCAGGCACCC +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHRQSRV*AAWQAP
Trigger: GGGTGCCTGCCATGCAGCGCATACTCGGGACTGCCT...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCACACATACACAGCTGTaGCCACCCAGTAGGTTGAAG +
Preference number: 4 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSTHTQL*PPSRLK
Trigger: CTTCAACCTACTGGGTGGCCACAGCTGTGTATGTGT...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCGCAGGAAGCGGGCCTTaGTGGGGCTACTGCGGGTTC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESAGSGP*WGYCGF
Trigger: GAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGC...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAGGTGCCCGCCACCACTaGACTCTGGCAAACGCCTCG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEGARHH*TLANAS
Trigger: CGAGGCGTTTGCCAGAGTTCAGTGGTGGCGGGCACC...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCCAGACTGCACCGCTTTaGGGCCAGGAAGGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESQTAPL*GQEGRP
Trigger: GGGCCTTCCTTCCTGGCCTCAAAGCGGTGCAGTCTG...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTACACTCATTGATGTCTaGCTCACAGTGCAGACCTGT +
Preference number: 4 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSTLIDV*LTVQTC
Trigger: ACAGGTCTGCACTGTGAGGCAGACATCAATGAGTGT...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAACGCAGGGGTCTGGCTaGGAGCAGTCTGGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQTQGSG*EQSGPW
Trigger: CCAAGGCCCAGACTGCTCCCAGCCAGACCCCTGCGT...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAATCAAGACACGTGGCCTaGTTGCGGCAGGGCCCGGAG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQESRHVA*LRQGPE
Trigger: CTCCGGGCCCTGCCGCAACCAGGCCACGTGTCTTGA...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAGAGCCCACGCCATCCTaGCAGGAGCCACCATGGAGG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEEPTPS*QEPPWR
Trigger: CCTCCATGGTGGCTCCTGCCAGGATGGCGTGGGCTC...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAGCCAGCACAAGGGCCTaGGTGGCAAGGGTCTTCCAG +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLASTRA*VARVFQ
Trigger: CTGGAAGACCCTTGCCACTCAGGCCCTTGTGCTGGC...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCAGGAGAATCGGGCGGTaGCCGCCACCACTGAACTCT +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESRRIGR*PPPLNS
Trigger: AGAGTTCAGTGGTGGCGGGCACCGCCCGATTCTCCT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAATCGACAGGGCTGGCTaGGGCACTCATCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEIDRAG*GTHPPG
Trigger: GCCAGGTGGATGAGTGCCGCAGCCAGCCCTGTCGAT...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACGTGATCAGTACAGGTaGCAGGGCCACAGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLRDQYR*QGHRGC
Trigger: GCAGCCCCTGTGGCCCTGGCACCTGTACTGATCACG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTATGCAGTGCCTCACACTaGCTCCAGGGGTCGTCCACG +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLCSASH*LQGSST
Trigger: CGTGGACGACCCCTGGAGGCAGTGTGAGGCACTGCA...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTAGGCAGGCTGGAGAGCTaGAGGCCGGGTCACACCGGC +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVGRLES*RPGHTG
Trigger: GCCGGTGTGACCCGGCCTGCAGCTCTCCAGCCTGCC...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAAGTGCGGTCAGTCCGTaGCCCGAGCTGGGCCCCTTG +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQESAVSP*PELGPL
Trigger: CAAGGGGCCCAGCTCGGGGCACGGACTGACCGCACT...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAATGGCAGCCTCATAGCTaGCCTCCCGAGCGGCCAAGA +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEWQPHS*PPERPR
Trigger: TCTTGGCCGCTCGGGAGGGCAGCTATGAGGCTGCCA...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAATCCAGTGAAGCCAGGTaGGCAGGTGCAGATGGCCCG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQESSEAR*AGADGP
Trigger: CGGGCCATCTGCACCTGCCCACCTGGCTTCACTGGA...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAATTCGGTCAAGACACGTaGCCTGGTTGCGGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQFGQDT*PGCGRA
Trigger: GGCCCTGCCGCAACCAGGCCACGTGTCTTGACCGAA...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACCCGTACGGCCCTCTaGACACACACAGTAGTGGGA +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHTRTAL*THTVVG
Trigger: TCCCACTACTGTGTGTGTCCAGAGGGCCGTACGGGT...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCTCACGATCGCAGTTCTaGTCCCCTCGCTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESSRSQF*SPRLAW
Trigger: CCAGGCCAAGCGAGGGGACCAGAACTGCGATCGTGA...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAATGGCACGCTCTGCTCTaGGGCCTCCAGCGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQEWHALL*GLQRLS
Trigger: GGAGAGCCGCTGGAGGCCCCAGAGCAGAGCGTGCCA...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAAACCGCACAATGTCCTaGTGCAGCCGCTCCTGGGCC +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQNRTMS*CSRSWA
Trigger: GGCCCAGGAGCGGCTGCACCAGGACATTGTGCGGTT...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCCACAGTAGGTCCCTGTaGAGCCTGCCATGCAGATGC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESHSRSL*SLPCRC
Trigger: GCATCTGCATGGCAGGCTTCACAGGGACCTACTGTG...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACACAGGTCCCTCCATTaGAGCAGGAACTGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLHRSLH*SRNWGC
Trigger: GCAGCCCCAGTTCCTGCTTCAATGGAGGGACCTGTG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCAATGGCGGGACACAGTaGCAGGTGAAGGTCAGCCCA +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESNGGTQ*QVKVSP
Trigger: TGGGCTGACCTTCACCTGTCACTGTGTCCCGCCATT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACAAGCGGAAGCGCAGTaGGGTGCGCAGAATAGCGCT +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLQAEAQ*GAQNSA
Trigger: AGCGCTATTCTGCGCACCTCACTGCGCTTCCGCTTG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAGCATCTGCATCTCCCTaGGGAGGAGTCAGCGCTGTG +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLASASP*GGVSAV
Trigger: CACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGC...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAAGCCAGGTGGGCAGGTaGAGATGGCCCGGCCACTCA +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQESQVGR*RWPGHS
Trigger: TGAGTGGCCGGGCCATCTGCACCTGCCCACCTGGCT...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAACCCATTCTGACAGGGTaGCTGGCTGCACCAGTCCAC +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEPILTG*LAAPVH
Trigger: GTGGACTGGTGCAGCCAGGCACCCTGTCAGAATGGG...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCTCTCATAAACAGGGTTaGAGGTGCGGTCGCGGCCAC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESSHKQG*RCGRGH
Trigger: GTGGCCGCGACCGCACCTGCAACCCTGTTTATGAGA...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATGGCTGCCAGGATCAGTaGAGTAGAGCCATCTGCCAT +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHGCQDQ*SRAICH
Trigger: ATGGCAGATGGCTCTACTGCACTGATCCTGGCAGCC...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACCTTGGTGGGGCTACTaGGGGTTCCTGCTGCAGGAT +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLPWWGY*GFLLQD
Trigger: ATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAAGGGAGGGCTGCTGGTaGGTGCACCGACCTCCATTT +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEREGCW*VHRPPF
Trigger: AAATGGAGGTCGGTGCACCCACCAGCAGCCCTCCCT...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAGCCACCACTGAACTCTaGCAAACGCCTCGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEATTEL*QTPRPA
Trigger: TGCTGGCCGAGGCGTTTGCCAGAGTTCAGTGGTGGC...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTAGCTGACGCAGGGGTCTaGCTGGGAGCAGTCTGGGCC +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVADAGV*LGAVWA
Trigger: GGCCCAGACTGCTCCCAGCCAGACCCCTGCGTCAGC...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAAACCTCACCCCCATCTaGGCTGCGGCCTCCGTGCAG +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQENLTPI*AAASVQ
Trigger: CTGCACGGAGGCCGCAGCCCAGATGGGGGTGAGGTT...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAGGCTGTCTGCTGGCATaGGATACCCACTGGGCACTG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEGCLLA*DTHWAL
Trigger: CAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCC...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGGGAAGACCATGGCCTaGCCACGTGCGTCCAAGCGG +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQEGKTMA*PRASKR
Trigger: CCGCTTGGACGCACGTGGCCAGGCCATGGTCTTCCC...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCAGTCAGCGCTGTGGCTaGTGCCACACGGATATCAGC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESSQRCG*CHTDIS
Trigger: GCTGATATCCGTGTGGCACCAGCCACAGCGCTGACT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAGGAGGCCAGCATAAGTaGGGTGAAGCCATCAGGCCC +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQGGQHK*GEAIRP
Trigger: GGGCCTGATGGCTTCACCCCACTTATGCTGGCCTCC...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCTCATGGCAGACTCCATaGCTACAGGGCTTGTGGGCA +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESSWQTP*LQGLWA
Trigger: TGCCCACAAGCCCTGTAGTCATGGAGTCTGCCATGA...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAACCTCGTGTTCACAGTaGCTACCCGTACGGCCCTCT +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLTSCSQ*LPVRPS
Trigger: AGAGGGCCGTACGGGTAGTCACTGTGAACACGAGGT...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAACACACCGGCTGTTGTTaGAGAGACGCCAGCACTGCA +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEHTGCC*RDASTA
Trigger: TGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGTG...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCGTGGTCATTCTCAGCTaGCTGCAGACAGAGCCGGTT +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESVVILS*LQTEPV
Trigger: AACCGGCTCTGTCTGCAGTCAGCTGAGAATGACCAC...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAGCTCATCCACTGCATTaGCATCGGCATGGCTGGCGA +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQAHPLH*HRHGWR
Trigger: TCGCCAGCCATGCCGATGTCAATGCAGTGGATGAGC...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGATATGGGGTGTGGCTaGGCAGGCAGGGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQEDMGCG*AGRAPE
Trigger: CTCTGGAGCCCTGCCTGCTCAGCCACACCCCATATC...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAACACATCCTGGTCACATaGCCCTCCAGTGAAGCCAGG +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQHILVT*PSSEAR
Trigger: CCTGGCTTCACTGGAGGGGCATGTGACCAGGATGTG...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTAGGGCGGTCTCGCCAGTaGGGTCAGTCCGTGCCCCGA +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLGRSRQ*GQSVPR
Trigger: TCGGGGCACGGACTGACCGCACTGGCGAGACCGCCC...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCGGTGGACAGAGGCAGTaGAAGCCATTTTCCCCATCC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESGGQRQ*KPFSPS
Trigger: GGATGGGGAAAATGGCTTCCACTGCCTCTGTCCACC...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACCTGTGAAGCCAGGATaGCAGACGCAGCGGAAATGC +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLPVKPG*QTQRKC
Trigger: GCATTTCCGCTGCGTCTGCCATCCTGGCTTCACAGG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAACCACGGGCTGTCTGCTaGCATGGGATACCCACTGGG +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQEPRAVC*HGIPTG
Trigger: CCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGG...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAAATAAGGATGCTCGCTaGGAACCCGCAGGAAGCGGG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQENKDAR*EPAGSG
Trigger: CCCGCTTCCTGCGGGTTCCCAGCGAGCATCCTTATT...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATAGGATCCAGGTGTATTaGGACAGGTACCACCATGAC +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHRIQVY*DRYHHD
Trigger: GTCATGGTGGTACCTGTCTCAATACACCTGGATCCT...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCCAGTCATCGATATTCTaGCTGCAGCTCTCACCCGTC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESQSSIF*LQLSPV
Trigger: GACGGGTGAGAGCTGCAGTCAGAATATCGATGACTG...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAATGCAGAGGGGCCCTGTaGATCCAGGCTGACAGACAC +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQECRGAL*IQADRH
Trigger: GTGTCTGTCAGCCTGGATTCACAGGGCCCCTCTGCA...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCAGTCATTCAAGTCTGTaGCCACCTCCCCCATCAGAC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESSHSSL*PPPPSD
Trigger: GTCTGATGGGGGAGGTGGTCACAGACTTGAATGACT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATGGCCTCTGGACATTCTaGGTCATTCAAGTCTGTGAC +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHGLWTF*VIQVCD
Trigger: GTCACAGACTTGAATGACTCAGAATGTCCAGAGGCC...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAGCACCGACCTCCATTTaGACATGGGCTTCCATCCAG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEAPTSI*TWASIQ
Trigger: CTGGATGGAAGCCCATGTGCAAATGGAGGTCGGTGC...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAAGCCTCCAGGGAGGGCTaGTGGTGGGTGCACCGACCT +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPREASREG*WWVHRP
Trigger: AGGTCGGTGCACCCACCAGCAGCCCTCCCTGGAGGC...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATGGTCCCTGTGAAGCCTaGCATGCAGATGCAAGTAAA +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHGPCEA*HADASK
Trigger: TTTACTTGCATCTGCATGGCAGGCTTCACAGGGACC...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATCCAAGTCTAGACATTTaGCCCCATATCGACAGGGCT +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHPSLDI*PHIDRA
Trigger: AGCCCTGTCGATATGGGGGCAAATGTCTAGACTTGG...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATTCCACATGGGCTGGATaGACACTCATTGATCTCCAC +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHSTWAG*TLIDLH
Trigger: GTGGAGATCAATGAGTGTGCATCCAGCCCATGTGGA...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAAGAGAACTCCCAGTGTaGCAGGGGGACAGGAACAGA +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQRELPV*QGDRNR
Trigger: TCTGTTCCTGTCCCCCTGGCACACTGGGAGTTCTCT...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCATGTCTGCCTCACAGTaGAGACCTGTGTATCCTGGG +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESMSASQ*RPVYPG
Trigger: CCCAGGATACACAGGTCTGCACTGTGAGGCAGACAT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACCTCCATTTGCACATaGGCTTCCATCCAGACAAGG +
Preference number: 4 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHTSICT*ASIQTR
Trigger: CCTTGTCTGGATGGAAGCCCATGTGCAAATGGAGGT...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAACCCTGGTAGCCAGGTaGGCAGGCACAGGCAAATCG +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQETLVAR*AGTGKS
Trigger: CGATTTGCCTGTGCCTGCCCACCTGGCTACCAGGGT...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAATGGGCCTTGCCAGCCTaGGGGACAGGAACAGACAGT +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQEWALPA*GTGTDS
Trigger: ACTGTCTGTTCCTGTCCCCCAGGCTGGCAAGGCCCA...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAGCAGAAAGTCGGCACTaGAGCGCAGCAACTCTTCAG +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQAESRH*SAATLQ
Trigger: CTGAAGAGTTGCTGCGCTCCAGTGCCGACTTTCTGC...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAGCATTGACATCGGCATaGCTGGCGATGAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLALTSA*LAMSSS
Trigger: GGAAGAGCTCATCGCCAGCCATGCCGATGTCAATGC...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAAATGGCCCTAAGCCATaGGGACCAGAGGGACTTCGA +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQENGPKP*GPEGLR
Trigger: TCGAAGTCCCTCTGGTCCCCATGGCTTAGGGCCATT...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACTTGGGGGTAACTTCTaGTTGGGGTCCCAGCTGAGT +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLLGGNF*LGSQLS
Trigger: ACTCAGCTGGGACCCCAACCAGAAGTTACCCCCAAG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAATGGATGCACACTCATTaGTCTCCACGTTGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEWMHTH*SPRCRG
Trigger: CCCTCTGCAACGTGGAGATCAATGAGTGTGCATCCA...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTACACTGGCCTCCATGCTaGCATGGCTGGGACTCACAG +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVHWPPC*HGWDSQ
Trigger: CTGTGAGTCCCAGCCATGTCAGCATGGAGGCCAGTG...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAATCCAGGGAGGGCTGCTaGTGGGTGCACCGACCTCCA +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPRESREGC*WVHRPP
Trigger: TGGAGGTCGGTGCACCCACCAGCAGCCCTCCCTGGA...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCACCACCATTGACACATaGGCTGCTCTGACATTCGTC +
Preference number: 4 (lower is better)
Translates to: KTFLLGRLSQENNRKRESTTIDT*AALTFV
Trigger: GACGAATGTCAGAGCAGCCCATGTGTCAATGGTGGT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTAACAGCGGAACCCGCCTaGTGCATCATGGCAGACTCC +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVTAEPA*CIMADS
Trigger: GGAGTCTGCCATGATGCACCAGGCGGGTTCCGCTGT...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAATCATCCACATCCTGCTaGCATCGTGGGCCTTGCCAG +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQESSTSC*HRGPCQ
Trigger: CTGGCAAGGCCCACGATGCCAGCAGGATGTGGATGA...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAGGTGCATTCAAATCCTaGGTGGGTGGGGTTGCAGAT +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEGAFKS*VGGVAD
Trigger: ATCTGCAACCCCACCCACCCAGGATTTGAATGCACC...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTAGATAGGGGAAGACCATaGCCTGGCCACGTGCGTCCA +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVDRGRP*PGHVRP
Trigger: TGGACGCACGTGGCCAGGCCATGGTCTTCCCCTATC...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAGCATCAGGGAAGCAGTaGTCATTCTCAGCTGACTGC +
Preference number: 4 (lower is better)
Translates to: EPLPPSALYLQLEVECIQASGKQ*SFSADC
Trigger: GCAGTCAGCTGAGAATGACCACTGCTTCCCTGATGC...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTAAGCAGCCAGGTAGGGTaGGGGCCGCTCTTGGGGAGA +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLSSQVG*GPLLGR
Trigger: TCTCCCCAAGAGCGGCCCCCACCCTACCTGGCTGCT...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTACCGGGCGACACTCATTaGTGTCTGCCTCACAGTGCA +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVPGDTH*CLPHSA
Trigger: TGCACTGTGAGGCAGACATCAATGAGTGTCGCCCGG...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTAAAGTCGCTCCACTGCTaGCAAGGCTCCCAGGTAGTC +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVKSLHC*QGSQVV
Trigger: GACTACCTGGGAGCCTTGTCAGCAGTGGAGCGACTT...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAATCCAGGTGGACAAATaGAGTAAGCCCCAGTCTGGA +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLIQVDK*SKPQSG
Trigger: TCCAGACTGGGGCTTACTGCATTTGTCCACCTGGAT...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAATCATTCTCAGCTGACTaGAGACAGAGCCGGTTGTCA +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQESFSAD*RQSRLS
Trigger: TGACAACCGGCTCTGTCTGCAGTCAGCTGAGAATGA...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAATGGCTGGGAGCAGTCTaGGCCTTGGAAGCCACGGAG +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPREWLGAV*ALEATE
Trigger: CTCCGTGGCTTCCAAGGCCCAGACTGCTCCCAGCCA...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTACAGGAGCCTCCGTTCTaGCAGGGCTGGGAAGCACAC +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLQEPPF*QGWEAH
Trigger: GTGTGCTTCCCAGCCCTGCCAGAACGGAGGCTCCTG...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAATCAGTGTTGCAGCCCTaGTCACAACGGCCATCTGCA +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQESVLQP*SQRPSA
Trigger: TGCAGATGGCCGTTGTGACCAGGGCTGCAACACTGA...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTATCAGCAGCAACCAGGTaGTGTTGGGTCCACTGGCGA +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVSAATR*CWVHWR
Trigger: TCGCCAGTGGACCCAACACCACCTGGTTGCTGCTGA...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAAAGGGCTGCTGGTGGGTaGACCGACCTCCATTTGCAC +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPRERAAGG*TDLHLH
Trigger: GTGCAAATGGAGGTCGGTGCACCCACCAGCAGCCCT...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAACCAGGTCCACACAGGTaGCATTGTGTAGGCACTGAA +
Preference number: 4 (lower is better)
Translates to: KQPKNISIRQAEPREQQEPGPHR*HCVGTE
Trigger: TTCAGTGCCTACACAATGGCACCTGTGTGGACCTGG...TTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTAGTCACAACGGCCATCTaGAAAGTGGTCGGCGCAGTA +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVVTTAI*KVVGAV
Trigger: TACTGCGCCGACCACTTTGCAGATGGCCGTTGTGAC...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAAGCTGGTCCACACACTTaGCACCATTCCGGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPREAGPHT*HHSGRE
Trigger: CTCCCTGCCGGAATGGTGCCAAGTGTGTGGACCAGC...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTACGGCCATCTGCAAAGTaGTCGGCGCAGTACTTCTCA +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVRPSAK*SAQYFS
Trigger: TGAGAAGTACTGCGCCGACCACTTTGCAGATGGCCG...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTATCAGACTCTCACCCTTaGCCATGTTCTTCATTCCCA +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLSDSHP*PCSSFP
Trigger: TGGGAATGAAGAACATGGCCAAGGGTGAGAGTCTGA...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAACTACCTTCAGTCTCTTaGCCTCTGGACATTCTGAGT +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQELPSVS*PLDILS
Trigger: ACTCAGAATGTCCAGAGGCCAAGAGACTGAAGGTAG...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAATGGTGTTGGGTCCACTaGCGACAGTCCTCAGGCTCC +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPREWCWVH*RQSSGS
Trigger: GGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCA...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTATTCCTGATGAGAATCTaGAAGACACCCTGGGCATCA +
Preference number: 4 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLFLMRI*KTPWAS
Trigger: TGATGCCCAGGGTGTCTTCCAGATTCTCATCAGGAA...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAACACAGTCATCAATGTTaGCTTCACAGTTCACACCTG +
Preference number: 4 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEHSHQC*LHSSHL
Trigger: CAGGTGTGAACTGTGAAGTCAACATTGATGACTGTG...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTACAGAGAGTCCACCGGTaGCAGTGTGACAGAGCTGTC +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLQRVHR*QCDRAV
Trigger: GACAGCTCTGTCACACTGTCACCGGTGGACTCTCTG...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAATTCCTCTCCATGTCCTaGAGCAGCCAGGTAGGGTGG +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPREFLSMS*SSQVGW
Trigger: CCACCCTACCTGGCTGCTCCAGGACATGGAGAGGAA...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACATTCATCCACATCCTaGTGGCATCGTGGGCCTTGC +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPREHSSTS*WHRGPC
Trigger: GCAAGGCCCACGATGCCAGCAGGATGTGGATGAATG...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTAATAGCGCTGAGTCGCTaGAGAAAGTCGGCACTGGAG +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLIALSR*RKSALE
Trigger: CTCCAGTGCCGACTTTCTGCAGCGACTCAGCGCTAT...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp GTATTAACTATTCCTTTATTAGGTGGTAAGGGAACTGAGAAGGTGAGGGTTGTACAGATAGCATCCTCATaGCAGGGGTTGCTGACACAT +
Preference number: 4 (lower is better)
Translates to: VLTIPLLGGKGTEKVRVVQIASS*QGLLTH
Trigger: ATGTGTCAGCAACCCCTGCCATGAGGATGCTATCTG...TACAACCCTCACCTTCTCAGTTCCCTTACCACCTAATAAAGGAATAGTTAATAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACATCGATATTCTGACTaGAGCTCTCACCCGTCCAGC +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPREHRYSD*SSHPSS
Trigger: GCTGGACGGGTGAGAGCTGCAGTCAGAATATCGATG...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTACCCAAGCTCATCCACTaGATTGACATCGGCATGGCT +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLPKLIH*IDIGMA
Trigger: AGCCATGCCGATGTCAATGCAGTGGATGAGCTTGGG...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTATTGACTTCACAGTTCTaGCCCTCGAAGCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLLTSQF*PSKPGR
Trigger: CCTTCCTGGCTTCGAGGGCCAGAACTGTGAAGTCAA...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR TCA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTATCATCCACATCCAGCTaGCACATGGACCCACTGAAT +
Preference number: 4 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLSSTSS*HMDPLN
Trigger: ATTCAGTGGGTCCATGTGTCAGCTGGATGTGGATGA...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR GCA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAATCTTCCTTGCTGTCCTaGATGTCCTTGTTGGCTCCA +
Preference number: 4 (lower is better)
Translates to: ILQKQPKNISIRQAEPRESSLLS*MSLLAP
Trigger: TGGAGCCAACAAGGACATGCAGGACAGCAAGGAAGA...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp AACCCGGCAGGAGGGCCCGGACAGCCCCGGAGGACAAGCGCAGCGTaGTCCACGGGCTGTCTGCTGGCATGGGATACCCACTGGGCACTG +
Preference number: 5 (lower is better)
Translates to: NPAGGPGQPRRTSAA*STGCLLAWDTHWAL
Trigger: CAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCCGGGGCTGTCCGGGCCCTCCTGCCGGGTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp CCATCCCAGCCACAGCCTGGGGTGTTGCACTCACGATCGCAGTTCTaGTCCCCTCGCTTGGCCTGGCAAGCCGCTCGCGGGCACCGTGGC +
Preference number: 5 (lower is better)
Translates to: PSQPQPGVLHSRSQF*SPRLAWQAARGHRG
Trigger: GCCACGGTGCCCGCGAGCGGCTTGCCAGGCCAAGCGAGGGGACCAGAACTGCGATCGTGAGTGCAACACCCCAGGCTGTGGCTGGGATGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CCGGACAGCCCCGGAGGACAAGCGCAGCGTGGTCCACGGGCTGTCTaGTGGCATGGGATACCCACTGGGCACTGCAGCTCTCGGCAAGAG +
Preference number: 5 (lower is better)
Translates to: PDSPGGQAQRGPRAV*WHGIPTGHCSSRQE
Trigger: CTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCCGGGGCTGTCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp CCCCGGAGGACAAGCGCAGCGTGGTCCACGGGCTGTCTGCTGGCATaGGATACCCACTGGGCACTGCAGCTCTCGGCAAGAGCGTGCCAC +
Preference number: 5 (lower is better)
Translates to: PRRTSAAWSTGCLLA*DTHWALQLSARACH
Trigger: GTGGCACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCCGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GACAGCCCCTGCCACCAGCAGTGGCAGCAGTGGCACGCTCTGCTCTaGGGCCTCCAGCGGCTCTCCTCGCACATCCCGAAGTGGGTATGG +
Preference number: 5 (lower is better)
Translates to: DSPCHQQWQQWHALL*GLQRLSSHIPKWVW
Trigger: CCATACCCACTTCGGGATGTGCGAGGAGAGCCGCTGGAGGCCCCAGAGCAGAGCGTGCCACTGCTGCCACTGCTGGTGGCAGGGGCTGTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GCCCCGACCACGAGTTCCCTGTGGCCCCAGCCCGGTCTTGCCAGGTaGCCTCCTGCTCTTCTTGGTCCCAGACTGCACCGCTTTGAGGCC +
Preference number: 5 (lower is better)
Translates to: APTTSSLWPQPGLAR*PPALLGPRLHRFEA
Trigger: GGCCTCAAAGCGGTGCAGTCTGGGACCAAGAAGAGCAGGAGGCCACCTGGCAAGACCGGGCTGGGGCCACAGGGAACTCGTGGTCGGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CGTGGTCCACGGGCTGTCTGCTGGCATGGGATACCCACTGGGCACTaGAGCTCTCGGCAAGAGCGTGCCACCCGCTCACAACGCAGACCC +
Preference number: 5 (lower is better)
Translates to: RGPRAVCWHGIPTGH*SSRQERATRSQRRP
Trigger: GGGTCTGCGTTGTGAGCGGGTGGCACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp AGAAAGACAGCCCCTGCCACCAGCAGTGGCAGCAGTGGCACGCTCTaGTCTGGGGCCTCCAGCGGCTCTCCTCGCACATCCCGAAGTGGG +
Preference number: 5 (lower is better)
Translates to: RKTAPATSSGSSGTL*SGASSGSPRTSRSG
Trigger: CCCACTTCGGGATGTGCGAGGAGAGCCGCTGGAGGCCCCAGAGCAGAGCGTGCCACTGCTGCCACTGCTGGTGGCAGGGGCTGTCTTTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp AGCGCAGCGTGGTCCACGGGCTGTCTGCTGGCATGGGATACCCACTaGGCACTGCAGCTCTCGGCAAGAGCGTGCCACCCGCTCACAACG +
Preference number: 5 (lower is better)
Translates to: SAAWSTGCLLAWDTH*ALQLSARACHPLTT
Trigger: CGTTGTGAGCGGGTGGCACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GACAGCCCCGGAGGACAAGCGCAGCGTGGTCCACGGGCTGTCTGCTaGCATGGGATACCCACTGGGCACTGCAGCTCTCGGCAAGAGCGT +
Preference number: 5 (lower is better)
Translates to: DSPGGQAQRGPRAVC*HGIPTGHCSSRQER
Trigger: ACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCCGGGGCTGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp CCCGGGATTCAGAGCCAGGGCTTGGCCGGTGATAGGGGAAGACCATaGCCTGGCCACGTGCGTCCAAGCGGAAGCGCAGTGAGGTGCGCA +
Preference number: 5 (lower is better)
Translates to: PGIQSQGLAGDRGRP*PGHVRPSGSAVRCA
Trigger: TGCGCACCTCACTGCGCTTCCGCTTGGACGCACGTGGCCAGGCCATGGTCTTCCCCTATCACCGGCCAAGCCCTGGCTCTGAATCCCGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GGCCCTAAGCCATGGGGACCAGAGGGACTTCGAGGTCCACTGGGCTaGTCCAGCAACCGCACAATGTCCTGGTGCAGCCGCTCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: GPKPWGPEGLRGPLG*SSNRTMSWCSRSWA
Trigger: GGCCCAGGAGCGGCTGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGGACCTCGAAGTCCCTCTGGTCCCCATGGCTTAGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp CCCGCTCACAACGCAGACCCCAGAATGGCGGGACACAGTGACAGGTaGAGGTCAGCCCACCTCCACGGCCTAGGCTGTGACGGCACTGGC +
Preference number: 5 (lower is better)
Translates to: PAHNADPRMAGHSDR*RSAHLHGLGCDGTG
Trigger: GCCAGTGCCGTCACAGCCTAGGCCGTGGAGGTGGGCTGACCTTCACCTGTCACTGTGTCCCGCCATTCTGGGGTCTGCGTTGTGAGCGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp AGCAGCCTCCAGGGAGGGCTGCTGGTGGGTGCACCGACCTCCATTTaGACATGGGCTTCCATCCAGACAAGGGGGTGCTGCAGCCCCCAG +
Preference number: 5 (lower is better)
Translates to: SSLQGGLLVGAPTSI*TWASIQTRGCCSPQ
Trigger: CTGGGGGCTGCAGCACCCCCTTGTCTGGATGGAAGCCCATGTGCAAATGGAGGTCGGTGCACCCACCAGCAGCCCTCCCTGGAGGCTGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp ACCACTGAACTCTGGCAAACGCCTCGGCCAGCACAAGGGCCTGAGTaGCAAGGGTCTTCCAGCTGGCACCGCTCACCCACCCAGCCTGGC +
Preference number: 5 (lower is better)
Translates to: TTELWQTPRPAQGPE*QGSSSWHRSPTQPG
Trigger: GCCAGGCTGGGTGGGTGAGCGGTGCCAGCTGGAAGACCCTTGCCACTCAGGCCCTTGTGCTGGCCGAGGCGTTTGCCAGAGTTCAGTGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGGCCCCAGCCCGGTCTaGCCAGGTGGCCTCCTGCTC +
Preference number: 5 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGGPSPV*PGGLLL
Trigger: GAGCAGGAGGCCACCTGGCAAGACCGGGCTGGGGCC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp AGAGGCAGGCTGGAGAGCTGCAGGCCGGGTCACACCGGCTGTTGTTaGAGAGACGCCAGCACTGCAGTGCCTCACACTGCCTCCAGGGGT +
Preference number: 5 (lower is better)
Translates to: RGRLESCRPGHTGCC*RDASTAVPHTASRG
Trigger: ACCCCTGGAGGCAGTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGTGACCCGGCCTGCAGCTCTCCAGCCTGCCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CTGGGCCTTGGAAGCCACGGAGACAACGACAGGAGAATCGGGCGGTaGCCGCCACCACTGAACTCTGGCAAACGCCTCGGCCAGCACAAG +
Preference number: 5 (lower is better)
Translates to: LGLGSHGDNDRRIGR*PPPLNSGKRLGQHK
Trigger: CTTGTGCTGGCCGAGGCGTTTGCCAGAGTTCAGTGGTGGCGGGCACCGCCCGATTCTCCTGTCGTTGTCTCCGTGGCTTCCAAGGCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CCATGTAACCACGGCAAGTGCCCCCGTGCTGGCAAGGCTGGGCCGTaGAGGGATCCACCTCGTGTTCACAGTGACTACCCGTACGGCCCT +
Preference number: 5 (lower is better)
Translates to: PCNHGKCPRAGKAGP*RDPPRVHSDYPYGP
Trigger: AGGGCCGTACGGGTAGTCACTGTGAACACGAGGTGGATCCCTGCACGGCCCAGCCTTGCCAGCACGGGGGCACTTGCCGTGGTTACATGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CTGGCATGGGATACCCACTGGGCACTGCAGCTCTCGGCAAGAGCGTaGCACCCGCTCACAACGCAGACCCCAGAATGGCGGGACACAGTG +
Preference number: 5 (lower is better)
Translates to: LAWDTHWALQLSARA*HPLTTQTPEWRDTV
Trigger: CACTGTGTCCCGCCATTCTGGGGTCTGCGTTGTGAGCGGGTGGCACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp GGGAACCCGCAGGAAGCGGGCCTTGGTGGGGCTACTGCGGGTTCCTaGTGCAGGATATTCCTCTCCATGTCCTGGAGCAGCCAGGTAGGG +
Preference number: 5 (lower is better)
Translates to: GNPQEAGLGGATAGS*CRIFLSMSWSSQVG
Trigger: CCCTACCTGGCTGCTCCAGGACATGGAGAGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGCGGGTTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp ACACTGACTCCCAGTGAAGCCCTCCCGGCAGGTGCATTCAAATCCTaGGTGGGTGGGGTTGCAGATGCCCCCGTGCAGACAGGGCCGGGA +
Preference number: 5 (lower is better)
Translates to: TLTPSEALPAGAFKS*VGGVADAPVQTGPG
Trigger: TCCCGGCCCTGTCTGCACGGGGGCATCTGCAACCCCACCCACCCAGGATTTGAATGCACCTGCCGGGAGGGCTTCACTGGGAGTCAGTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp ACAGGATTGAGCAGACCAAAGCTGAGCACACAGCCCCCAGGAGGCTaGCGCCCCAGAGGACCCGCCCTACTTGCGCCTAGCTGTGCCAAG +
Preference number: 5 (lower is better)
Translates to: TGLSRPKLSTQPPGG*RPRGPALLAPSCAK
Trigger: CTTGGCACAGCTAGGCGCAAGTAGGGCGGGTCCTCTGGGGCGCCAGCCTCCTGGGGGCTGTGTGCTCAGCTTTGGTCTGCTCAATCCTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp GGGGAAGACCATGGCCTGGCCACGTGCGTCCAAGCGGAAGCGCAGTaGGGTGCGCAGAATAGCGCTGAGTCGCTGCAGAAAGTCGGCACT +
Preference number: 5 (lower is better)
Translates to: GEDHGLATCVQAEAQ*GAQNSAESLQKVGT
Trigger: AGTGCCGACTTTCTGCAGCGACTCAGCGCTATTCTGCGCACCTCACTGCGCTTCCGCTTGGACGCACGTGGCCAGGCCATGGTCTTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp GAGGCACCGGCACATTCATCCACATCCTGCTGGCATCGTGGGCCTTaGCAGCCTGGGGGACAGGAACAGACAGTCAGCCGGTCAGGGTCA +
Preference number: 5 (lower is better)
Translates to: EAPAHSSTSCWHRGP*QPGGQEQTVSRSGS
Trigger: TGACCCTGACCGGCTGACTGTCTGTTCCTGTCCCCCAGGCTGGCAAGGCCCACGATGCCAGCAGGATGTGGATGAATGTGCCGGTGCCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CTGCAGGCCGGGTCACACCGGCTGTTGTTGAAGAGACGCCAGCACTaGAGTGCCTCACACTGCCTCCAGGGGTCGTCCACGTTCAGTGAG +
Preference number: 5 (lower is better)
Translates to: LQAGSHRLLLKRRQH*SASHCLQGSSTFSE
Trigger: CTCACTGAACGTGGACGACCCCTGGAGGCAGTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGTGACCCGGCCTGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CCCGGTTGGCGAGATGATCCAGCAGCAGCTTGGCAGCCTCATAGCTaGCCTCCCGAGCGGCCAAGAACAGCGGCGTCTCTTCCTTGCTGT +
Preference number: 5 (lower is better)
Translates to: PGWRDDPAAAWQPHS*PPERPRTAASLPCC
Trigger: ACAGCAAGGAAGAGACGCCGCTGTTCTTGGCCGCTCGGGAGGGCAGCTATGAGGCTGCCAAGCTGCTGCTGGATCATCTCGCCAACCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp AACCCGCAGGAAGCGGGCCTTGGTGGGGCTACTGCGGGTTCCTGCTaGAGGATATTCCTCTCCATGTCCTGGAGCAGCCAGGTAGGGTGG +
Preference number: 5 (lower is better)
Translates to: NPQEAGLGGATAGSC*RIFLSMSWSSQVGW
Trigger: CCACCCTACCTGGCTGCTCCAGGACATGGAGAGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGCGGGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp GATGCTCGCTGGGAACCCGCAGGAAGCGGGCCTTGGTGGGGCTACTaGGGGTTCCTGCTGCAGGATATTCCTCTCCATGTCCTGGAGCAG +
Preference number: 5 (lower is better)
Translates to: DARWEPAGSGPWWGY*GFLLQDIPLHVLEQ
Trigger: CTGCTCCAGGACATGGAGAGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGCGGGTTCCCAGCGAGCATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp AGACAACGACAGGAGAATCGGGCGGTGCCCGCCACCACTGAACTCTaGCAAACGCCTCGGCCAGCACAAGGGCCTGAGTGGCAAGGGTCT +
Preference number: 5 (lower is better)
Translates to: RQRQENRAVPATTEL*QTPRPAQGPEWQGS
Trigger: AGACCCTTGCCACTCAGGCCCTTGTGCTGGCCGAGGCGTTTGCCAGAGTTCAGTGGTGGCGGGCACCGCCCGATTCTCCTGTCGTTGTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GCGAGGGCCACTCCACCCGGGCTCACAAACACAGCGGAACCCGCCTaGTGCATCATGGCAGACTCCATGACTACAGGGCTTGTGGGCACA +
Preference number: 5 (lower is better)
Translates to: ARATPPGLTNTAEPA*CIMADSMTTGLVGT
Trigger: TGTGCCCACAAGCCCTGTAGTCATGGAGTCTGCCATGATGCACCAGGCGGGTTCCGCTGTGTTTGTGAGCCCGGGTGGAGTGGCCCTCGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp ACAGCGACCCCCATTCTGACAGGGTGCCTGGCTGCACCAGTCCACTaGGTTCTGACACTGACTCCCAGTGAAGCCCTCCCGGCAGGTGCA +
Preference number: 5 (lower is better)
Translates to: TATPILTGCLAAPVH*VLTLTPSEALPAGA
Trigger: TGCACCTGCCGGGAGGGCTTCACTGGGAGTCAGTGTCAGAACCCAGTGGACTGGTGCAGCCAGGCACCCTGTCAGAATGGGGGTCGCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GCTGTGGCTGGTGCCACACGGATATCAGCAGCAACCAGGTGGTGTTaGGTCCACTGGCGACAGTCCTCAGGCTCCTCTGCACCCATGCCC +
Preference number: 5 (lower is better)
Translates to: AVAGATRISAATRWC*VHWRQSSGSSAPMP
Trigger: GGGCATGGGTGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 90 bp GTCAGCGCTGTGGCTGGTGCCACACGGATATCAGCAGCAACCAGGTaGTGTTGGGTCCACTGGCGACAGTCCTCAGGCTCCTCTGCACCC +
Preference number: 5 (lower is better)
Translates to: VSAVAGATRISAATR*CWVHWRQSSGSSAP
Trigger: GGGTGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCGCTGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 90 bp GCAATGGCCCTAAGCCATGGGGACCAGAGGGACTTCGAGGTCCACTaGGCTGGTCCAGCAACCGCACAATGTCCTGGTGCAGCCGCTCCT +
Preference number: 5 (lower is better)
Translates to: AMALSHGDQRDFEVH*AGPATAQCPGAAAP
Trigger: AGGAGCGGCTGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGGACCTCGAAGTCCCTCTGGTCCCCATGGCTTAGGGCCATTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AGTACACAGAGTCCGGATTGGCCAAACGGGCCCACAGACTCAGCCCCACGGGGGCCATGGAGGCACGGGTaGGGGTCACAGTCGTCAATG +
Preference number: 5 (lower is better)
Translates to: STQSPDWPNGPTDSAPRGPWRHG*GSQSSM
Trigger: CATTGACGACTGTGACCCCAACCCGTGCCTCCATGG...CCCCCGTGGGGCTGAGTCTGTGGGCCCGTTTGGCCAATCCGGACTCTGTGTACT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp GTGCCTGGCTGCACCAGTCCACTGGGTTCTGACACTGACTCCCAGTaGAGCCCTCCCGGCAGGTGCATTCAAATCCTGGGTGGGTGGGGT +
Preference number: 5 (lower is better)
Translates to: VPGCTSPLGSDTDSQ*SPPGRCIQILGGWG
Trigger: ACCCCACCCACCCAGGATTTGAATGCACCTGCCGGGAGGGCTTCACTGGGAGTCAGTGTCAGAACCCAGTGGACTGGTGCAGCCAGGCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp AACCAGGTGGTGTTGGGTCCACTGGCGACAGTCCTCAGGCTCCTCTaGACCCATGCCCGGCTCCTCTACCTTCAGTCTCTTGGCCTCTGG +
Preference number: 5 (lower is better)
Translates to: NQVVLGPLATVLRLL*THARLLYLQSLGLW
Trigger: CCAGAGGCCAAGAGACTGAAGGTAGAGGAGCCGGGCATGGGTGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCACCTGGTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp GAAGCCATCAGGCCCTCGGACGTTGACATCCACTCCGTCTGCATCTaGATCTCCCTGAGGAGGAGTCAGCGCTGTGGCTGGTGCCACACG +
Preference number: 5 (lower is better)
Translates to: EAIRPSDVDIHSVCI*ISLRRSQRCGWCHT
Trigger: CGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCCTGATGGCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp ATAGGGGTCAGGCCCTCGGACGTTGACATCCACTCCGTCTGCATCTaGATCTCCCTGAGGAGGAGTCAGCGCTGTGGCTGGTGCCACACG +
Preference number: 5 (lower is better)
Translates to: IGVRPSDVDIHSVCI*ISLRRSQRCGWCHT
Trigger: CGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCCTGACCCCTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235816.2
CDS-3UTR CAA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCTGGCATCGTGGGCCTaGCCAGCCTGGGGGACAGGA +
Preference number: 5 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPLASWA*PAWGTG
Trigger: TCCTGTCCCCCAGGCTGGCAAGGCCCACGATGCCAG...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp GCTGGGACTCACAGGGGGACAGAGCAATCTGACAGCGAGGCCCTGTaGAGCCAGGATGGCAGACGCAGCGGAAATGCCCACCTGGATCTT +
Preference number: 5 (lower is better)
Translates to: AGTHRGTEQSDSEAL*SQDGRRSGNAHLDL
Trigger: AAGATCCAGGTGGGCATTTCCGCTGCGTCTGCCATCCTGGCTTCACAGGGCCTCGCTGTCAGATTGCTCTGTCCCCCTGTGAGTCCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp GGCCCTCGGACGTTGACATCCACTCCGTCTGCATCTGCATCTCCCTaGGGAGGAGTCAGCGCTGTGGCTGGTGCCACACGGATATCAGCA +
Preference number: 5 (lower is better)
Translates to: GPRTLTSTPSASASP*GGVSAVAGATRISA
Trigger: TGCTGATATCCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS GCA 90 bp GGGACAGCACCTCACACTGATGGCCCTGGAATCCAGGGGCACAGGTaGAGCGAAAGCCTATTCCATCACTGGTGCAGGTGCCACCAGCCT +
Preference number: 5 (lower is better)
Translates to: GTAPHTDGPGIQGHR*SESLFHHWCRCHQP
Trigger: AGGCTGGTGGCACCTGCACCAGTGATGGAATAGGCTTTCGCTGCACCTGTGCCCCTGGATTCCAGGGCCATCAGTGTGAGGTGCTGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp ACGCAGCGGAAATGCCCACCTGGATCTTGTAGGCAGTCCCGAGTATaGGCTGCATGGCAGGCACCCGGGCGACACTCATTGATGTCTGCC +
Preference number: 5 (lower is better)
Translates to: TQRKCPPGSCRQSRV*AAWQAPGRHSLMSA
Trigger: GGCAGACATCAATGAGTGTCGCCCGGGTGCCTGCCATGCAGCGCATACTCGGGACTGCCTACAAGATCCAGGTGGGCATTTCCGCTGCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp GGTGTTGGGTCCACTGGCGACAGTCCTCAGGCTCCTCTGCACCCATaGCCGGCTCCTCTACCTTCAGTCTCTTGGCCTCTGGACATTCTG +
Preference number: 5 (lower is better)
Translates to: GVGSTGDSPQAPLHP*PAPLPSVSWPLDIL
Trigger: CAGAATGTCCAGAGGCCAAGAGACTGAAGGTAGAGGAGCCGGGCATGGGTGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp TGGCAGATGCACCTGAAATTCCCTGGCAGGTTGGTGCAGGTACCATaGGGGCCGCAGGGTGAGGCACCGGCACATTCATCCACATCCTGC +
Preference number: 5 (lower is better)
Translates to: WQMHLKFPGRLVQVP*GPQGEAPAHSSTSC
Trigger: GCAGGATGTGGATGAATGTGCCGGTGCCTCACCCTGCGGCCCCCATGGTACCTGCACCAACCTGCCAGGGAATTTCAGGTGCATCTGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp CCACTCCGTCTGCATCTGCATCTCCCTGAGGAGGAGTCAGCGCTGTaGCTGGTGCCACACGGATATCAGCAGCAACCAGGTGGTGTTGGG +
Preference number: 5 (lower is better)
Translates to: PLRLHLHLPEEESAL*LVPHGYQQQPGGVG
Trigger: CCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS TCA 90 bp CCGTGCTCACAGAGGCTTGGAGTACAGGGGGACAGCACCTCACACTaGTGGCCCTGGAATCCAGGGGCACAGGTGCAGCGAAAGCCTATT +
Preference number: 5 (lower is better)
Translates to: PCSQRLGVQGDSTSH*WPWNPGAQVQRKPI
Trigger: AATAGGCTTTCGCTGCACCTGTGCCCCTGGATTCCAGGGCCATCAGTGTGAGGTGCTGTCCCCCTGTACTCCAAGCCTCTGTGAGCACGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CGGGAGGACAACGGCAGAGGTACTTGTCCACCAAGTCTAGACATTTaGCCCCATATCGACAGGGCTGGCTGCGGCACTCATCCACCTGGC +
Preference number: 5 (lower is better)
Translates to: REDNGRGTCPPSLDI*PHIDRAGCGTHPPG
Trigger: GCCAGGTGGATGAGTGCCGCAGCCAGCCCTGTCGATATGGGGGCAAATGTCTAGACTTGGTGGACAAGTACCTCTGCCGTTGTCCTCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CTGGGGGACAGTTACAGCGGAAGCCACCCACCAGGTCCACACAGGTaGCATTGTGTAGGCACTGAACGCCTGAGTCCAAGGATGGGCCTA +
Preference number: 5 (lower is better)
Translates to: LGDSYSGSHPPGPHR*HCVGTERLSPRMGL
Trigger: TAGGCCCATCCTTGGACTCAGGCGTTCAGTGCCTACACAATGGCACCTGTGTGGACCTGGTGGGTGGCTTCCGCTGTAACTGTCCCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp CAGCGGAAGAAAGGGACACTCTGTACAGGTAGGCATGAGCCCCCATaGAGACAAGGGGCAGAGGCGCAGCTGGCGTTAGTAGCTCCTGAG +
Preference number: 5 (lower is better)
Translates to: QRKKGTLCTGRHEPP*RQGAEAQLALVAPE
Trigger: CTCAGGAGCTACTAACGCCAGCTGCGCCTCTGCCCCTTGTCTGCATGGGGGCTCATGCCTACCTGTACAGAGTGTCCCTTTCTTCCGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp TCCAAGCGGAAGCGCAGTGAGGTGCGCAGAATAGCGCTGAGTCGCTaGAGAAAGTCGGCACTGGAGCGCAGCAACTCTTCAGGAGGCAGA +
Preference number: 5 (lower is better)
Translates to: SKRKRSEVRRIALSR*RKSALERSNSSGGR
Trigger: TCTGCCTCCTGAAGAGTTGCTGCGCTCCAGTGCCGACTTTCTGCAGCGACTCAGCGCTATTCTGCGCACCTCACTGCGCTTCCGCTTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp GTCTGCATCTGCATCTCCCTGAGGAGGAGTCAGCGCTGTGGCTGGTaGCACACGGATATCAGCAGCAACCAGGTGGTGTTGGGTCCACTG +
Preference number: 5 (lower is better)
Translates to: VCICISLRRSQRCGW*HTDISSNQVVLGPL
Trigger: CAGTGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 90 bp GTCGCGGCCACCAGAGTAGCAGTCAAAGTTGTCATAGAGGCAGGCTaGAGAGCTGCAGGCCGGGTCACACCGGCTGTTGTTGAAGAGACG +
Preference number: 5 (lower is better)
Translates to: VAATRVAVKVVIEAG*RAAGRVTPAVVEET
Trigger: CGTCTCTTCAACAACAGCCGGTGTGACCCGGCCTGCAGCTCTCCAGCCTGCCTCTATGACAACTTTGACTGCTACTCTGGTGGCCGCGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp TCCGTCTGCATCTGCATCTCCCTGAGGAGGAGTCAGCGCTGTGGCTaGTGCCACACGGATATCAGCAGCAACCAGGTGGTGTTGGGTCCA +
Preference number: 5 (lower is better)
Translates to: SVCICISLRRSQRCG*CHTDISSNQVVLGP
Trigger: TGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 90 bp GGGTCAAATAAGGATGCTCGCTGGGAACCCGCAGGAAGCGGGCCTTaGTGGGGCTACTGCGGGTTCCTGCTGCAGGATATTCCTCTCCAT +
Preference number: 5 (lower is better)
Translates to: GSNKDARWEPAGSGP*WGYCGFLLQDIPLH
Trigger: ATGGAGAGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGCGGGTTCCCAGCGAGCATCCTTATTTGACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAGGGGGTAACTTCTGGTaGGGGTCCCAGCTGAGTCTG +
Preference number: 5 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGGGNFW*GSQLSL
Trigger: CAGACTCAGCTGGGACCCCAACCAGAAGTTACCCCC...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp CAAGACACGTGGCCTGGTTGCGGCAGGGCCCGGAGAGACACTCATTaGCATCAGTCTCACAGCGAGGTCCAGTATAGCCACGGCCACATT +
Preference number: 5 (lower is better)
Translates to: QDTWPGCGRARRDTH*HQSHSEVQYSHGHI
Trigger: AATGTGGCCGTGGCTATACTGGACCTCGCTGTGAGACTGATGTCAATGAGTGTCTCTCCGGGCCCTGCCGCAACCAGGCCACGTGTCTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 90 bp GGCTTTGTATGTCGCACAGGCGGCCACTCCATCCAGGTGGACAAATaGAGTAAGCCCCAGTCTGGACACAGCGACCCCCATTCTGACAGG +
Preference number: 5 (lower is better)
Translates to: GFVCRTGGHSIQVDK*SKPQSGHSDPHSDR
Trigger: CCTGTCAGAATGGGGGTCGCTGTGTCCAGACTGGGGCTTACTGCATTTGTCCACCTGGATGGAGTGGCCGCCTGTGCGACATACAAAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GCAGGGATCCACCTCGTGTTCACAGTGACTACCCGTACGGCCCTCTaGACACACACAGTAGTGGGAGCGGCCCTTGTCTATGCACTTTCC +
Preference number: 5 (lower is better)
Translates to: AGIHLVFTVTTRTAL*THTVVGAALVYALS
Trigger: GGAAAGTGCATAGACAAGGGCCGCTCCCACTACTGTGTGTGTCCAGAGGGCCGTACGGGTAGTCACTGTGAACACGAGGTGGATCCCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp TCAAATAAGGATGCTCGCTGGGAACCCGCAGGAAGCGGGCCTTGGTaGGGCTACTGCGGGTTCCTGCTGCAGGATATTCCTCTCCATGTC +
Preference number: 5 (lower is better)
Translates to: SNKDARWEPAGSGPW*GYCGFLLQDIPLHV
Trigger: GACATGGAGAGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGCGGGTTCCCAGCGAGCATCCTTATTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCCGGGCGACACTCATaGATGTCTGCCTCACAGTGC +
Preference number: 5 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSPGRHS*MSASQC
Trigger: GCACTGTGAGGCAGACATCAATGAGTGTCGCCCGGG...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AGGGAGAGGGATCAAAAGGAGGTCCCAGATCCCTTAGGGGGCCAAGGTGGTGGAATTCAGAGCCAGGGCTaGGCCGGTGATAGGGGAAGA +
Preference number: 5 (lower is better)
Translates to: RERDQKEVPDPLGGQGGGIQSQG*AGDRGR
Trigger: TCTTCCCCTATCACCGGCCAAGCCCTGGCTCTGAAT...TCCACCACCTTGGCCCCCTAAGGGATCTGGGACCTCCTTTTGATCCCTCTCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp CTGGGAGGTGAGCCTGGAGTTGAGGCTTTGAGCAGACAAGACCCCTTTCCCAGTGCATCCAGGAGACGCTaGGCTGCATCCGCTCTAGCA +
Preference number: 5 (lower is better)
Translates to: LGGEPGVEALSRQDPFPSASRRR*AASALA
Trigger: TGCTAGAGCGGATGCAGCCAAGCGTCTCCTGGATGC...ACTGGGAAAGGGGTCTTGTCTGCTCAAAGCCTCAACTCCAGGCTCACCTCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp GCACCATTCCGGCAGGGAGTGCTTGCACACTCATCCACATCCAGCTaGCACATGGACCCACTGAATCCTGATGGGCAGGTGCAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: APFRQGVLAHSSTSS*HMDPLNPDGQVQLK
Trigger: CTTCAGCTGCACCTGCCCATCAGGATTCAGTGGGTCCATGTGTCAGCTGGATGTGGATGAGTGTGCAAGCACTCCCTGCCGGAATGGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp GAACCAGTAGTGTGTCACAGGCATAGGGGTCAGGCCCTCGGACGTTaGCATCCACTCCGTCTGCATCTGCATCTCCCTGAGGAGGAGTCA +
Preference number: 5 (lower is better)
Translates to: EPVVCHRHRGQALGR*HPLRLHLHLPEEES
Trigger: TGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCCTGACCCCTATGCCTGTGACACACTACTGGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235816.2
CDS GCA 90 bp GCAGCACTCTGGGCATCAGGGAAGCAGTGGTCATTCTCAGCTGACTaGAGACAGAGCCGGTTGTCAATCTCCAGCATCACCACAGAGCCG +
Preference number: 5 (lower is better)
Translates to: AALWASGKQWSFSAD*RQSRLSISSITTEP
Trigger: CGGCTCTGTGGTGATGCTGGAGATTGACAACCGGCTCTGTCTGCAGTCAGCTGAGAATGACCACTGCTTCCCTGATGCCCAGAGTGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp GCGACACTCATTGATGTCTGCCTCACAGTGCAGACCTGTGTATCCTaGGGGACAGTTACAGCGGAAGCCACCCACCAGGTCCACACAGGT +
Preference number: 5 (lower is better)
Translates to: ATLIDVCLTVQTCVS*GTVTAEATHQVHTG
Trigger: ACCTGTGTGGACCTGGTGGGTGGCTTCCGCTGTAACTGTCCCCCAGGATACACAGGTCTGCACTGTGAGGCAGACATCAATGAGTGTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCGTCACTTTGGCAGCTTaGACCCTGGTAGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPVTLAA*TLVARW
Trigger: CCACCTGGCTACCAGGGTCAAAGCTGCCAAAGTGAC...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp CACAGTTCTGGCCCTCGAAGCCAGGAAGGCAAGCACAGTCATATGTaGCATCACTGCTCTGCCTACAGGTGCCACCATTACGACACGGGG +
Preference number: 5 (lower is better)
Translates to: HSSGPRSQEGKHSHM*HHCSAYRCHHYDTG
Trigger: CCCCGTGTCGTAATGGTGGCACCTGTAGGCAGAGCAGTGATGTCACATATGACTGTGCTTGCCTTCCTGGCTTCGAGGGCCAGAACTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp GAACGCCTGAGTCCAAGGATGGGCCTAGGTCACAGTCGTCCTCATTaGTCTCACAGAGAACTCCCAGTGTGCCAGGGGGACAGGAACAGA +
Preference number: 5 (lower is better)
Translates to: ERLSPRMGLGHSRPH*SHRELPVCQGDRNR
Trigger: TCTGTTCCTGTCCCCCTGGCACACTGGGAGTTCTCTGTGAGATCAATGAGGACGACTGTGACCTAGGCCCATCCTTGGACTCAGGCGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp TACTTGTCCACCAAGTCTAGACATTTGCCCCCATATCGACAGGGCTaGCTGCGGCACTCATCCACCTGGCTCTCACAGCGTATGCCCGTA +
Preference number: 5 (lower is better)
Translates to: YLSTKSRHLPPYRQG*LRHSSTWLSQRMPV
Trigger: TACGGGCATACGCTGTGAGAGCCAGGTGGATGAGTGCCGCAGCCAGCCCTGTCGATATGGGGGCAAATGTCTAGACTTGGTGGACAAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp CCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCTGCACCGACCTCCATTaGCACATGGGCTTCCATCCA +
Preference number: 5 (lower is better)
Translates to: PRLATWYIRGPHTQYVEPCTDLH*HMGFHP
Trigger: TGGATGGAAGCCCATGTGCAAATGGAGGTCGGTGCA...GGGCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp CATGCCCGGCTCCTCTACCTTCAGTCTCTTGGCCTCTGGACATTCTaGGTCATTCAAGTCTGTGACCACCTCCCCCATCAGACTCTCACC +
Preference number: 5 (lower is better)
Translates to: HARLLYLQSLGLWTF*VIQVCDHLPHQTLT
Trigger: GGTGAGAGTCTGATGGGGGAGGTGGTCACAGACTTGAATGACTCAGAATGTCCAGAGGCCAAGAGACTGAAGGTAGAGGAGCCGGGCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp TTCATTCCCAGTGCATCTTGTCCCACAGGCTCCCTCCGGCCCTTGTaGCCAGCAGCTATGTCCTTGTGTAATGCAAAACCCTCAGGGAAC +
Preference number: 5 (lower is better)
Translates to: FIPSASCPTGSLRPL*PAAMSLCNAKPSGN
Trigger: GTTCCCTGAGGGTTTTGCATTACACAAGGACATAGCTGCTGGCCACAAGGGCCGGAGGGAGCCTGTGGGACAAGATGCACTGGGAATGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCCCGGAGAGACACTCATaGACATCAGTCTCACAGCGA +
Preference number: 5 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSPERHS*TSVSQR
Trigger: TCGCTGTGAGACTGATGTCAATGAGTGTCTCTCCGG...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp ATGAGCCCTGTGTATTCACACACCGACCCAAATGTTCACAGGGGTTaGCACCAATCGAGCACTCATCCACATCCTGGTCACATGCCCCTC +
Preference number: 5 (lower is better)
Translates to: MSPVYSHTDPNVHRG*HQSSTHPHPGHMPL
Trigger: GAGGGGCATGTGACCAGGATGTGGATGAGTGCTCGATTGGTGCCAACCCCTGTGAACATTTGGGTCGGTGTGTGAATACACAGGGCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACCTGGGTGGGTGGGGTaGCAGATGCCCCCGTGCAGA +
Preference number: 5 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLPGWVG*QMPPCR
Trigger: TCTGCACGGGGGCATCTGCAACCCCACCCACCCAGG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GCCCAAGGCTGGCTACTTGGTACATACGAGGGCCACATACTCAGTACGTGGAGCATCAGACTCTCACCCTaGGCCATGTTCTTCATTCCC +
Preference number: 5 (lower is better)
Translates to: AQGWLLGTYEGHILSTWSIRLSP*AMFFIP
Trigger: GGGAATGAAGAACATGGCCAAGGGTGAGAGTCTGAT...GCTCCACGTACTGAGTATGTGGCCCTCGTATGTACCAAGTAGCCAGCCTTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp CTCACAGCGAGGTCCAGTATAGCCACGGCCACATTGGCACAAGAATaGGCCCTGTGTATTCACACACCGACCCAAATGTTCACAGGGGTT +
Preference number: 5 (lower is better)
Translates to: LTARSSIATATLAQE*ALCIHTPTQMFTGV
Trigger: AACCCCTGTGAACATTTGGGTCGGTGTGTGAATACACAGGGCTCATTCTTGTGCCAATGTGGCCGTGGCTATACTGGACCTCGCTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp CACTGGCAGCGGAAGGATCCAGGTGTATTGAGACAGGTACCACCATaGCGGCAAGTTGTACCAGATCGGCACTCATCTATGTCACTTTGG +
Preference number: 5 (lower is better)
Translates to: HWQRKDPGVLRQVPP*RQVVPDRHSSMSLW
Trigger: CCAAAGTGACATAGATGAGTGCCGATCTGGTACAACTTGCCGTCATGGTGGTACCTGTCTCAATACACCTGGATCCTTCCGCTGCCAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 90 bp CCTTCAGTCTCTTGGCCTCTGGACATTCTGAGTCATTCAAGTCTGTaGCCACCTCCCCCATCAGACTCTCACCCTTGGCCATGTTCTTCA +
Preference number: 5 (lower is better)
Translates to: PSVSWPLDILSHSSL*PPPPSDSHPWPCSS
Trigger: TGAAGAACATGGCCAAGGGTGAGAGTCTGATGGGGGAGGTGGTCACAGACTTGAATGACTCAGAATGTCCAGAGGCCAAGAGACTGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 90 bp AGACACCGATGTCCAGGACAGTCATCCACGTTGACTTCACAGTTCTaGCCCTCGAAGCCAGGAAGGCAAGCACAGTCATATGTGACATCA +
Preference number: 5 (lower is better)
Translates to: RHRCPGQSSTLTSQF*PSKPGRQAQSYVTS
Trigger: TGATGTCACATATGACTGTGCTTGCCTTCCTGGCTTCGAGGGCCAGAACTGTGAAGTCAACGTGGATGACTGTCCTGGACATCGGTGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATAAGGTAGCCTCCACGTaGTTCACAGCTGCAGCCCAG +
Preference number: 5 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHKVAST*FTAAAQ
Trigger: CTGGGCTGCAGCTGTGAACAACGTGGAGGCTACCTT...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCAAATTCCCTGGCAGGTaGGTGCAGGTACCATGGGGG +
Preference number: 5 (lower is better)
Translates to: KTFLLGRLSQENNRKRESKFPGR*VQVPWG
Trigger: CCCCCATGGTACCTGCACCAACCTGCCAGGGAATTT...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAACACAGGTCCCTCCATaGAAGCAGGAACTGGGGCTG +
Preference number: 5 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLTQVPP*KQELGL
Trigger: CAGCCCCAGTTCCTGCTTCAATGGAGGGACCTGTGT...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAAAGCTCATCCACTGCATaGACATCGGCATGGCTGGCG +
Preference number: 5 (lower is better)
Translates to: EPLPPSALYLQLEVECIQSSSTA*TSAWLA
Trigger: CGCCAGCCATGCCGATGTCAATGCAGTGGATGAGCT...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACCAGAGGCTGTGGCATaGGTAGCAGTTGCTGGGCTA +
Preference number: 5 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLPEAVA*VAVAGL
Trigger: TAGCCCAGCAACTGCTACCAATGCCACAGCCTCTGG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAGCCATCACCTGCCTCTaGGGGGTAACTTCTGGTTGG +
Preference number: 5 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLAITCL*GVTSGW
Trigger: CCAACCAGAAGTTACCCCCAAGAGGCAGGTGATGGC...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATCAACGGCAGAGGTACTaGTCCACCAAGTCTAGACAT +
Preference number: 5 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHQRQRY*STKSRH
Trigger: ATGTCTAGACTTGGTGGACAAGTACCTCTGCCGTTG...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACAACAGGAAGAGGGAGAGCTCATTGATCTCCACGTaGCAGAGGGGCCCTGTGAAT +
Preference number: 5 (lower is better)
Translates to: KTFLLGRLSQENNRKRESSLIST*QRGPVN
Trigger: ATTCACAGGGCCCCTCTGCAACGTGGAGATCAATGA...GCTCTCCCTCTTCCTGTTGTTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTACTGGATGCACACTCATaGATCTCCACGTTGCAGAGG +
Preference number: 5 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLLDAHS*ISTLQR
Trigger: CCTCTGCAACGTGGAGATCAATGAGTGTGCATCCAG...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAGAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATCCAGCAGCTATGTCCTaGTGTAATGCAAAACCCTCA +
Preference number: 5 (lower is better)
Translates to: GRATPTFCPVFTIRSGMHPAAMS*CNAKPS
Trigger: TGAGGGTTTTGCATTACACAAGGACATAGCTGCTGG...ATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AGGAAGAAAGAAGTCATAGAGGAGTGTCACTTCAGCACCCCTCAAATCCAAGAAGGAACAGCTACAGGATaGAGCAGACCAAAGCTGAGC +
Preference number: 5 (lower is better)
Translates to: RKKEVIEECHFSTPQIQEGTATG*SRPKLS
Trigger: GCTCAGCTTTGGTCTGCTCAATCCTGTAGCTGTTCC...TTCTTGGATTTGAGGGGTGCTGAAGTGACACTCCTCTATGACTTCTTTCTTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GAGCCACTCCCACCTTCTGCCCTGTATTTACAATTAGAAGTGGAATGCATACAACCATTGACTCTGTCCTaGCAGACACCACCATTGACA +
Preference number: 5 (lower is better)
Translates to: EPLPPSALYLQLEVECIQPLTLS*QTPPLT
Trigger: TGTCAATGGTGGTGTCTGCAAGGACAGAGTCAATGG...TTGTATGCATTCCACTTCTAATTGTAAATACAGGGCAGAAGGTGGGAGTGGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp GGGAATTCAGCTACAAAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTATCTACCTTCAGTCTCTaGGCCTCTGGACATTCTGAG +
Preference number: 5 (lower is better)
Translates to: GNSATKDCDQVPYYKNSLSTFSL*ASGHSE
Trigger: CTCAGAATGTCCAGAGGCCAAGAGACTGAAGGTAGA...TAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTTTGTAGCTGAATTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAACCAGACTGCACCGCTTaGAGGCCAGGAAGGAAGGCC +
Preference number: 5 (lower is better)
Translates to: ILQKQPKNISIRQAEPREPDCTA*RPGRKA
Trigger: GGCCTTCCTTCCTGGCCTCAAAGCGGTGCAGTCTGG...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTATCCGGCAGGGAGTGCTaGCACACTCATCCACATCCA +
Preference number: 5 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLSGREC*HTHPHP
Trigger: TGGATGTGGATGAGTGTGCAAGCACTCCCTGCCGGA...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTAGGGGTCAGCCTCGTATaGGCAGTGTGTGCCTGTGTA +
Preference number: 5 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLGVSLV*AVCACV
Trigger: TACACAGGCACACACTGCCAATACGAGGCTGACCCC...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp AAGGACTGTGACCAGGTGCCATATTACAAAAACAGCCTAAAAACATTTCTATTATCACACCGGCTGTTGTaGAAGAGACGCCAGCACTGC +
Preference number: 5 (lower is better)
Translates to: KDCDQVPYYKNSLKTFLLSHRLL*KRRQHC
Trigger: GCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGTGA...TAATAGAAATGTTTTTAGGCTGTTTTTGTAATATGGCACCTGGTCACAGTCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAAAGCGGCGTCTCTTCCTaGCTGTCCTGCATGTCCTTG +
Preference number: 5 (lower is better)
Translates to: ILQKQPKNISIRQAEPRESGVSS*LSCMSL
Trigger: CAAGGACATGCAGGACAGCAAGGAAGAGACGCCGCT...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS-3UTR CAA 90 bp ATATTACAAAAACAGCCTAAAAACATTTCTATTAGGCAGGCTGAGCCAAGAGAAAAATGTTCACAGGGGTaGGCACCAATCGAGCACTCA +
Preference number: 5 (lower is better)
Translates to: ILQKQPKNISIRQAEPREKCSQG*APIEHS
Trigger: TGAGTGCTCGATTGGTGCCAACCCCTGTGAACATTT...TTCTCTTGGCTCAGCCTGCCTAATAGAAATGTTTTTAGGCTGTTTTTGTAATAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAGCAGGGGCAGCGCCCGCATGGGCGGTGGTGGCGGTaGCAAGGCCATCAGGCGACGACGGCGGCGGCGGCC +
Preference number: 6 (lower is better)
Translates to: QQGQRPHGRWWR*QGHQATTAAAA
Trigger: GGCCGCCGCCGCCGTCGTCGCCTGATGGCCTTGCCACCGCCACCACCGCCCATGCGGGCGCTGCCCCTGCTG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAGCAGCAGCAGGGGCAGCGCCCGCATGGGCGGTGGTaGCGGTGGCAAGGCCATCAGGCGACGACGGCGGCG +
Preference number: 6 (lower is better)
Translates to: QQQQGQRPHGRW*RWQGHQATTAA
Trigger: CGCCGCCGTCGTCGCCTGATGGCCTTGCCACCGCCACCACCGCCCATGCGGGCGCTGCCCCTGCTGCTGCTG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GCCCCGCTAGCAGCAGCAGCAGGGGCAGCGCCCGCATaGGCGGTGGTGGCGGTGGCAAGGCCATCAGGCGAC +
Preference number: 6 (lower is better)
Translates to: APLAAAAGAAPA*AVVAVARPSGD
Trigger: GTCGCCTGATGGCCTTGCCACCGCCACCACCGCCCATGCGGGCGCTGCCCCTGCTGCTGCTGCTAGCGGGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp CCCCAGGAGGCTGGCGCCCCAGAGGACCCGCCCTACTaGCGCCTAGCTGTGCCAAGGACACCGCGGTGGCCG +
Preference number: 6 (lower is better)
Translates to: PQEAGAPEDPPY*RLAVPRTPRWP
Trigger: CGGCCACCGCGGTGTCCTTGGCACAGCTAGGCGCAAGTAGGGCGGGTCCTCTGGGGCGCCAGCCTCCTGGGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CCACTGGGCTGGTCCAGCAACCGCACAATGTCCTGGTaGAGCCGCTCCTGGGCCACGTCCCGGGGCAGCCTG +
Preference number: 6 (lower is better)
Translates to: PLGWSSNRTMSW*SRSWATSRGSL
Trigger: CAGGCTGCCCCGGGACGTGGCCCAGGAGCGGCTGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GGAGGGCCCGGACAGCCCCGGAGGACAAGCGCAGCGTaGTCCACGGGCTGTCTGCTGGCATGGGATACCCAC +
Preference number: 6 (lower is better)
Translates to: GGPGQPRRTSAA*STGCLLAWDTH
Trigger: GTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCCGGGGCTGTCCGGGCCCTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CACTCACGATCGCAGTTCTGGTCCCCTCGCTTGGCCTaGCAAGCCGCTCGCGGGCACCGTGGCTCCTCGGGG +
Preference number: 6 (lower is better)
Translates to: HSRSQFWSPRLA*QAARGHRGSSG
Trigger: CCCCGAGGAGCCACGGTGCCCGCGAGCGGCTTGCCAGGCCAAGCGAGGGGACCAGAACTGCGATCGTGAGTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GGTCCACTGGGCTGGTCCAGCAACCGCACAATGTCCTaGTGCAGCCGCTCCTGGGCCACGTCCCGGGGCAGC +
Preference number: 6 (lower is better)
Translates to: GPLGWSSNRTMS*CSRSWATSRGS
Trigger: GCTGCCCCGGGACGTGGCCCAGGAGCGGCTGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGGACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp AGCCCTCCCGGCAGGTGCATTCAAATCCTGGGTGGGTaGGGTTGCAGATGCCCCCGTGCAGACAGGGCCGGG +
Preference number: 6 (lower is better)
Translates to: SPPGRCIQILGG*GCRCPRADRAG
Trigger: CCCGGCCCTGTCTGCACGGGGGCATCTGCAACCCCACCCACCCAGGATTTGAATGCACCTGCCGGGAGGGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CCACAGCCTGGGGTGTTGCACTCACGATCGCAGTTCTaGTCCCCTCGCTTGGCCTGGCAAGCCGCTCGCGGG +
Preference number: 6 (lower is better)
Translates to: PQPGVLHSRSQF*SPRLAWQAARG
Trigger: CCCGCGAGCGGCTTGCCAGGCCAAGCGAGGGGACCAGAACTGCGATCGTGAGTGCAACACCCCAGGCTGTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp CCCCATCTGGGCTGCGGCCTCCGTGCAGGGCAGGCTTaGTATGTCGCACAGGCGGCCACTCCATCCAGGTGG +
Preference number: 6 (lower is better)
Translates to: PHLGCGLRAGQA*YVAQAATPSRW
Trigger: CCACCTGGATGGAGTGGCCGCCTGTGCGACATACAAAGCCTGCCCTGCACGGAGGCCGCAGCCCAGATGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp GTGTTGCACTCACGATCGCAGTTCTGGTCCCCTCGCTaGGCCTGGCAAGCCGCTCGCGGGCACCGTGGCTCC +
Preference number: 6 (lower is better)
Translates to: VLHSRSQFWSPR*AWQAARGHRGS
Trigger: GGAGCCACGGTGCCCGCGAGCGGCTTGCCAGGCCAAGCGAGGGGACCAGAACTGCGATCGTGAGTGCAACAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp CCCCGACCACGAGTTCCCTGTGGCCCCAGCCCGGTCTaGCCAGGTGGCCTCCTGCTCTTCTTGGTCCCAGAC +
Preference number: 6 (lower is better)
Translates to: PRPRVPCGPSPV*PGGLLLFLVPD
Trigger: GTCTGGGACCAAGAAGAGCAGGAGGCCACCTGGCAAGACCGGGCTGGGGCCACAGGGAACTCGTGGTCGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp CCCTGTGGCCCCAGCCCGGTCTTGCCAGGTGGCCTCCTGCTCTTCTaGGTCCCAGACTGCACCGCTTTGAGGCCAGGAAGGAAGGCCCCT +
Preference number: 6 (lower is better)
Translates to: PCGPSPVLPGGLLLF*VPDCTALRPGRKAP
Trigger: AGGGGCCTTCCTTCCTGGCCTCAAAGCGGTGCAGTCTGGGACCAAGAAGAGCAGGAGGCCACCTGGCAAGACCGGGCTGGGGCCACAGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp TGGGCAGGCACAGGCAAATCGGCCATCCGGCCCCACTaGGCAGGGGGCACCATGAACACAGGGCCTGCTGAC +
Preference number: 6 (lower is better)
Translates to: WAGTGKSAIRPH*AGGTMNTGPAD
Trigger: GTCAGCAGGCCCTGTGTTCATGGTGCCCCCTGCTCAGTGGGGCCGGATGGCCGATTTGCCTGTGCCTGCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CACGGCAAGTGCCCCCGTGCTGGCAAGGCTGGGCCGTaGAGGGATCCACCTCGTGTTCACAGTGACTACCCG +
Preference number: 6 (lower is better)
Translates to: HGKCPRAGKAGP*RDPPRVHSDYP
Trigger: CGGGTAGTCACTGTGAACACGAGGTGGATCCCTGCACGGCCCAGCCTTGCCAGCACGGGGGCACTTGCCGTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CCCGGAGGACAAGCGCAGCGTGGTCCACGGGCTGTCTaGTGGCATGGGATACCCACTGGGCACTGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: PGGQAQRGPRAV*WHGIPTGHCSS
Trigger: AGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCCGGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CTCTGGCAAACGCCTCGGCCAGCACAAGGGCCTGAGTaGCAAGGGTCTTCCAGCTGGCACCGCTCACCCACC +
Preference number: 6 (lower is better)
Translates to: LWQTPRPAQGPE*QGSSSWHRSPT
Trigger: GGTGGGTGAGCGGTGCCAGCTGGAAGACCCTTGCCACTCAGGCCCTTGTGCTGGCCGAGGCGTTTGCCAGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAGGAGAATCGGGCGGTGCCCGCCACCACTGAACTCTaGCAAACGCCTCGGCCAGCACAAGGGCCTGAGTGG +
Preference number: 6 (lower is better)
Translates to: QENRAVPATTEL*QTPRPAQGPEW
Trigger: CCACTCAGGCCCTTGTGCTGGCCGAGGCGTTTGCCAGAGTTCAGTGGTGGCGGGCACCGCCCGATTCTCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAGGGCTGGGACTCACAGGCATCTGGAGCCAGGCTCTaGCTACAGCGAGGGCCACTCCACCCGGGCTCACAA +
Preference number: 6 (lower is better)
Translates to: QGWDSQASGARL*LQRGPLHPGSQ
Trigger: TTGTGAGCCCGGGTGGAGTGGCCCTCGCTGTAGCCAGAGCCTGGCTCCAGATGCCTGTGAGTCCCAGCCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp TGGTCCACGGGCTGTCTGCTGGCATGGGATACCCACTaGGCACTGCAGCTCTCGGCAAGAGCGTGCCACCCG +
Preference number: 6 (lower is better)
Translates to: WSTGCLLAWDTH*ALQLSARACHP
Trigger: CGGGTGGCACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GGAGGACAAGCGCAGCGTGGTCCACGGGCTGTCTGCTaGCATGGGATACCCACTGGGCACTGCAGCTCTCGG +
Preference number: 6 (lower is better)
Translates to: GGQAQRGPRAVC*HGIPTGHCSSR
Trigger: CCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGTCCTCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp TGTTGCACTCACGATCGCAGTTCTGGTCCCCTCGCTTaGCCTGGCAAGCCGCTCGCGGGCACCGTGGCTCCT +
Preference number: 6 (lower is better)
Translates to: CCTHDRSSGPLA*PGKPLAGTVAP
Trigger: AGGAGCCACGGTGCCCGCGAGCGGCTTGCCAGGCCAAGCGAGGGGACCAGAACTGCGATCGTGAGTGCAACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAGAGCCAGGGCTTGGCCGGTGATAGGGGAAGACCATaGCCTGGCCACGTGCGTCCAAGCGGAAGCGCAGTG +
Preference number: 6 (lower is better)
Translates to: QSQGLAGDRGRP*PGHVRPSGSAV
Trigger: CACTGCGCTTCCGCTTGGACGCACGTGGCCAGGCCATGGTCTTCCCCTATCACCGGCCAAGCCCTGGCTCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp AGCTTCTTGCCCCGACCACGAGTTCCCTGTGGCCCCAGCCCGGTCTaGCCAGGTGGCCTCCTGCTCTTCTTGGTCCCAGACTGCACCGCT +
Preference number: 6 (lower is better)
Translates to: SFLPRPRVPCGPSPV*PGGLLLFLVPDCTA
Trigger: AGCGGTGCAGTCTGGGACCAAGAAGAGCAGGAGGCCACCTGGCAAGACCGGGCTGGGGCCACAGGGAACTCGTGGTCGGGGCAAGAAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp ACAACGACAGGAGAATCGGGCGGTGCCCGCCACCACTaGACTCTGGCAAACGCCTCGGCCAGCACAAGGGCC +
Preference number: 6 (lower is better)
Translates to: TTTGESGGARHH*TLANASASTRA
Trigger: GGCCCTTGTGCTGGCCGAGGCGTTTGCCAGAGTTCAGTGGTGGCGGGCACCGCCCGATTCTCCTGTCGTTGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp TGCCTCACACTGCCTCCAGGGGTCGTCCACGTTCAGTaGGCAGTCACCGCCATCCCAGCCACAGCCTGGGGT +
Preference number: 6 (lower is better)
Translates to: CLTLPPGVVHVQ*AVTAIPATAWG
Trigger: ACCCCAGGCTGTGGCTGGGATGGCGGTGACTGCTCACTGAACGTGGACGACCCCTGGAGGCAGTGTGAGGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GGAAGCCACGGAGACAACGACAGGAGAATCGGGCGGTaGCCGCCACCACTGAACTCTGGCAAACGCCTCGGC +
Preference number: 6 (lower is better)
Translates to: GSHGDNDRRIGR*PPPLNSGKRLG
Trigger: GCCGAGGCGTTTGCCAGAGTTCAGTGGTGGCGGGCACCGCCCGATTCTCCTGTCGTTGTCTCCGTGGCTTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GATACCCACTGGGCACTGCAGCTCTCGGCAAGAGCGTaGCACCCGCTCACAACGCAGACCCCAGAATGGCGG +
Preference number: 6 (lower is better)
Translates to: DTHWALQLSARA*HPLTTQTPEWR
Trigger: CCGCCATTCTGGGGTCTGCGTTGTGAGCGGGTGGCACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CGGGCTGTCTGCTGGCATGGGATACCCACTGGGCACTaGAGCTCTCGGCAAGAGCGTGCCACCCGCTCACAA +
Preference number: 6 (lower is better)
Translates to: RAVCWHGIPTGH*SSRQERATRSQ
Trigger: TTGTGAGCGGGTGGCACGCTCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GGGCTGCTGGTGGGTGCACCGACCTCCATTTGCACATaGGCTTCCATCCAGACAAGGGGGTGCTGCAGCCCC +
Preference number: 6 (lower is better)
Translates to: GLLVGAPTSICT*ASIQTRGCCSP
Trigger: GGGGCTGCAGCACCCCCTTGTCTGGATGGAAGCCCATGTGCAAATGGAGGTCGGTGCACCCACCAGCAGCCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GTGAAGCCCTCCCGGCAGGTGCATTCAAATCCTGGGTaGGTGGGGTTGCAGATGCCCCCGTGCAGACAGGGC +
Preference number: 6 (lower is better)
Translates to: VKPSRQVHSNPG*VGLQMPPCRQG
Trigger: GCCCTGTCTGCACGGGGGCATCTGCAACCCCACCCACCCAGGATTTGAATGCACCTGCCGGGAGGGCTTCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CCATGGGGACCAGAGGGACTTCGAGGTCCACTGGGCTaGTCCAGCAACCGCACAATGTCCTGGTGCAGCCGC +
Preference number: 6 (lower is better)
Translates to: PWGPEGLRGPLG*SSNRTMSWCSR
Trigger: GCGGCTGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGGACCTCGAAGTCCCTCTGGTCCCCATGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp TCTGCCAGAGGTCCTGGACAGGCTAGTGTCAGCTTCTaGCCCCGACCACGAGTTCCCTGTGGCCCCAGCCCG +
Preference number: 6 (lower is better)
Translates to: SARGPGQASVSF*PRPRVPCGPSP
Trigger: CGGGCTGGGGCCACAGGGAACTCGTGGTCGGGGCAAGAAGCTGACACTAGCCTGTCCAGGACCTCTGGCAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp AAGCAGCCTCCAGGGAGGGCTGCTGGTGGGTGCACCGACCTCCATTaGCACATGGGCTTCCATCCAGACAAGGGGGTGCTGCAGCCCCCA +
Preference number: 6 (lower is better)
Translates to: KQPPGRAAGGCTDLH*HMGFHPDKGVLQPP
Trigger: TGGGGGCTGCAGCACCCCCTTGTCTGGATGGAAGCCCATGTGCAAATGGAGGTCGGTGCACCCACCAGCAGCCCTCCCTGGAGGCTGCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp CGCTCACAACGCAGACCCCAGAATGGCGGGACACAGTaGCAGGTGAAGGTCAGCCCACCTCCACGGCCTAGG +
Preference number: 6 (lower is better)
Translates to: RSQRRPQNGGTQ*QVKVSPPPRPR
Trigger: CCTAGGCCGTGGAGGTGGGCTGACCTTCACCTGTCACTGTGTCCCGCCATTCTGGGGTCTGCGTTGTGAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CAGGGAGGGCTGCTGGTGGGTGCACCGACCTCCATTTaGACATGGGCTTCCATCCAGACAAGGGGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: QGGLLVGAPTSI*TWASIQTRGCC
Trigger: GCAGCACCCCCTTGTCTGGATGGAAGCCCATGTGCAAATGGAGGTCGGTGCACCCACCAGCAGCCCTCCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GGGCACAGGTGCAGCGAAAGCCTATTCCATCACTGGTaGAGGTGCCACCAGCCTGGCAGGGCTGGGACTCAC +
Preference number: 6 (lower is better)
Translates to: GHRCSESLFHHW*RCHQPGRAGTH
Trigger: GTGAGTCCCAGCCCTGCCAGGCTGGTGGCACCTGCACCAGTGATGGAATAGGCTTTCGCTGCACCTGTGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GTCAGCCGGTCAGGGTCAGACTCACAGTGGCCTCCGTaGTCACAGAGGCTTGGAGTACAGGGGGACAGCACC +
Preference number: 6 (lower is better)
Translates to: VSRSGSDSQWPP*SQRLGVQGDST
Trigger: GGTGCTGTCCCCCTGTACTCCAAGCCTCTGTGAGCACGGAGGCCACTGTGAGTCTGACCCTGACCGGCTGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp AGCAGTCACCGCCATCCCAGCCACAGCCTGGGGTGTTaGACTCACGATCGCAGTTCTGGTCCCCTCGCTTGG +
Preference number: 6 (lower is better)
Translates to: SSHRHPSHSLGC*THDRSSGPLAW
Trigger: CCAAGCGAGGGGACCAGAACTGCGATCGTGAGTGCAACACCCCAGGCTGTGGCTGGGATGGCGGTGACTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GGGTCACACCGGCTGTTGTTGAAGAGACGCCAGCACTaGAGTGCCTCACACTGCCTCCAGGGGTCGTCCACG +
Preference number: 6 (lower is better)
Translates to: GSHRLLLKRRQH*SASHCLQGSST
Trigger: CGTGGACGACCCCTGGAGGCAGTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGTGACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAGGGGCACAGGTGCAGCGAAAGCCTATTCCATCACTaGTGCAGGTGCCACCAGCCTGGCAGGGCTGGGACT +
Preference number: 6 (lower is better)
Translates to: QGHRCSESLFHH*CRCHQPGRAGT
Trigger: AGTCCCAGCCCTGCCAGGCTGGTGGCACCTGCACCAGTGATGGAATAGGCTTTCGCTGCACCTGTGCCCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAGGGTGAGGCACCGGCACATTCATCCACATCCTGCTaGCATCGTGGGCCTTGCCAGCCTGGGGGACAGGAA +
Preference number: 6 (lower is better)
Translates to: QGEAPAHSSTSC*HRGPCQPGGQE
Trigger: TTCCTGTCCCCCAGGCTGGCAAGGCCCACGATGCCAGCAGGATGTGGATGAATGTGCCGGTGCCTCACCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp ACAAGCGCAGCGTGGTCCACGGGCTGTCTGCTGGCATaGGATACCCACTGGGCACTGCAGCTCTCGGCAAGA +
Preference number: 6 (lower is better)
Translates to: TSAAWSTGCLLA*DTHWALQLSAR
Trigger: TCTTGCCGAGAGCTGCAGTGCCCAGTGGGTATCCCATGCCAGCAGACAGCCCGTGGACCACGCTGCGCTTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GATGCTCGCTGGGAACCCGCAGGAAGCGGGCCTTGGTaGGGCTACTGCGGGTTCCTGCTGCAGGATATTCCT +
Preference number: 6 (lower is better)
Translates to: DARWEPAGSGPW*GYCGFLLQDIP
Trigger: AGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGCGGGTTCCCAGCGAGCATC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GGGACTCAGGAGACGGGGTCAAATAAGGATGCTCGCTaGGAACCCGCAGGAAGCGGGCCTTGGTGGGGCTAC +
Preference number: 6 (lower is better)
Translates to: GTQETGSNKDAR*EPAGSGPWWGY
Trigger: GTAGCCCCACCAAGGCCCGCTTCCTGCGGGTTCCCAGCGAGCATCCTTATTTGACCCCGTCTCCTGAGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GCTGAGTCTGGGACTGAGGGAGGGAGGGAACAGATATaGGGTGTGGCTGAGCAGGCAGGGCTCCAGAGGCTG +
Preference number: 6 (lower is better)
Translates to: AESGTEGGREQI*GVAEQAGLQRL
Trigger: CAGCCTCTGGAGCCCTGCCTGCTCAGCCACACCCCATATCTGTTCCCTCCCTCCCTCAGTCCCAGACTCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp CCAGGGAGGGCTGCTGGTGGGTGCACCGACCTCCATTaGCACATGGGCTTCCATCCAGACAAGGGGGTGCTG +
Preference number: 6 (lower is better)
Translates to: PGRAAGGCTDLH*HMGFHPDKGVL
Trigger: CAGCACCCCCTTGTCTGGATGGAAGCCCATGTGCAAATGGAGGTCGGTGCACCCACCAGCAGCCCTCCCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp CCCCTGTGGCAGATGCACCTGAAATTCCCTGGCAGGTaGGTGCAGGTACCATGGGGGCCGCAGGGTGAGGCA +
Preference number: 6 (lower is better)
Translates to: PLWQMHLKFPGR*VQVPWGPQGEA
Trigger: TGCCTCACCCTGCGGCCCCCATGGTACCTGCACCAACCTGCCAGGGAATTTCAGGTGCATCTGCCACAGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp CAGGCTGGAGAGCTGCAGGCCGGGTCACACCGGCTGTaGTTGAAGAGACGCCAGCACTGCAGTGCCTCACAC +
Preference number: 6 (lower is better)
Translates to: QAGELQAGSHRL*LKRRQHCSASH
Trigger: GTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAACAGCCGGTGTGACCCGGCCTGCAGCTCTCCAGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp CAACCTCACCCCCATCTGGGCTGCGGCCTCCGTGCAGGGCAGGCTTaGTATGTCGCACAGGCGGCCACTCCATCCAGGTGGACAAATGCA +
Preference number: 6 (lower is better)
Translates to: QPHPHLGCGLRAGQA*YVAQAATPSRWTNA
Trigger: TGCATTTGTCCACCTGGATGGAGTGGCCGCCTGTGCGACATACAAAGCCTGCCCTGCACGGAGGCCGCAGCCCAGATGGGGGTGAGGTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp CGCTGTGGCTGGTGCCACACGGATATCAGCAGCAACCAGGTGGTGTaGGGTCCACTGGCGACAGTCCTCAGGCTCCTCTGCACCCATGCC +
Preference number: 6 (lower is better)
Translates to: RCGWCHTDISSNQVV*GPLATVLRLLCTHA
Trigger: GGCATGGGTGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CAA 90 bp TTGCCAGGTGGCCTCCTGCTCTTCTTGGTCCCAGACTGCACCGCTTaGAGGCCAGGAAGGAAGGCCCCTGGTGGGCAGAGCAATGGCCCT +
Preference number: 6 (lower is better)
Translates to: LPGGLLLFLVPDCTA*RPGRKAPGGQSNGP
Trigger: AGGGCCATTGCTCTGCCCACCAGGGGCCTTCCTTCCTGGCCTCAAAGCGGTGCAGTCTGGGACCAAGAAGAGCAGGAGGCCACCTGGCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp CAGAGGCTTGGAGTACAGGGGGACAGCACCTCACACTaGTGGCCCTGGAATCCAGGGGCACAGGTGCAGCGA +
Preference number: 6 (lower is better)
Translates to: QRLGVQGDSTSH*WPWNPGAQVQR
Trigger: TCGCTGCACCTGTGCCCCTGGATTCCAGGGCCATCAGTGTGAGGTGCTGTCCCCCTGTACTCCAAGCCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp AACGCAGACCCCAGAATGGCGGGACACAGTGACAGGTaGAGGTCAGCCCACCTCCACGGCCTAGGCTGTGAC +
Preference number: 6 (lower is better)
Translates to: NADPRMAGHSDR*RSAHLHGLGCD
Trigger: GTCACAGCCTAGGCCGTGGAGGTGGGCTGACCTTCACCTGTCACTGTGTCCCGCCATTCTGGGGTCTGCGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp CATGGCCTGGCCACGTGCGTCCAAGCGGAAGCGCAGTaGGGTGCGCAGAATAGCGCTGAGTCGCTGCAGAAA +
Preference number: 6 (lower is better)
Translates to: HGLATCVQAEAQ*GAQNSAESLQK
Trigger: TTTCTGCAGCGACTCAGCGCTATTCTGCGCACCTCACTGCGCTTCCGCTTGGACGCACGTGGCCAGGCCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GCACATTCATCCACATCCTGCTGGCATCGTGGGCCTTaGCAGCCTGGGGGACAGGAACAGACAGTCAGCCGG +
Preference number: 6 (lower is better)
Translates to: AHSSTSCWHRGP*QPGGQEQTVSR
Trigger: CCGGCTGACTGTCTGTTCCTGTCCCCCAGGCTGGCAAGGCCCACGATGCCAGCAGGATGTGGATGAATGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CCACGTGATCAGTACAGGTGCCAGGGCCACAGGGGCTaGTCAGACATTCGTCCACATCTCGGGCACAGCGAG +
Preference number: 6 (lower is better)
Translates to: PRDQYRCQGHRG*SDIRPHLGHSE
Trigger: CTCGCTGTGCCCGAGATGTGGACGAATGTCTGAGCAGCCCCTGTGGCCCTGGCACCTGTACTGATCACGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GGACACAGCGACCCCCATTCTGACAGGGTGCCTGGCTaGACCAGTCCACTGGGTTCTGACACTGACTCCCAG +
Preference number: 6 (lower is better)
Translates to: GHSDPHSDRVPG*TSPLGSDTDSQ
Trigger: CTGGGAGTCAGTGTCAGAACCCAGTGGACTGGTGCAGCCAGGCACCCTGTCAGAATGGGGGTCGCTGTGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp AGGCCCTCGGACGTTGACATCCACTCCGTCTGCATCTaGATCTCCCTGAGGAGGAGTCAGCGCTGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: RPSDVDIHSVCI*ISLRRSQRCGW
Trigger: CCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS GCA 72 bp CGAGATGATCCAGCAGCAGCTTGGCAGCCTCATAGCTaGCCTCCCGAGCGGCCAAGAACAGCGGCGTCTCTT +
Preference number: 6 (lower is better)
Translates to: RDDPAAAWQPHS*PPERPRTAASL
Trigger: AAGAGACGCCGCTGTTCTTGGCCGCTCGGGAGGGCAGCTATGAGGCTGCCAAGCTGCTGCTGGATCATCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GAAGCGGGCCTTGGTGGGGCTACTGCGGGTTCCTGCTaGAGGATATTCCTCTCCATGTCCTGGAGCAGCCAG +
Preference number: 6 (lower is better)
Translates to: EAGLGGATAGSC*RIFLSMSWSSQ
Trigger: CTGGCTGCTCCAGGACATGGAGAGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CAGGAAGCGGGCCTTGGTGGGGCTACTGCGGGTTCCTaGTGCAGGATATTCCTCTCCATGTCCTGGAGCAGC +
Preference number: 6 (lower is better)
Translates to: QEAGLGGATAGS*CRIFLSMSWSS
Trigger: GCTGCTCCAGGACATGGAGAGGAATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GGGGTCAGGCCCTCGGACGTTGACATCCACTCCGTCTaGATCTGCATCTCCCTGAGGAGGAGTCAGCGCTGT +
Preference number: 6 (lower is better)
Translates to: GVRPSDVDIHSV*ICISLRRSQRC
Trigger: ACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCCTGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235816.2
CDS CCA 72 bp GTGGCTGGTGCCACACGGATATCAGCAGCAACCAGGTaGTGTTGGGTCCACTGGCGACAGTCCTCAGGCTCC +
Preference number: 6 (lower is better)
Translates to: VAGATRISAATR*CWVHWRQSSGS
Trigger: GGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 72 bp AAGGATGCTCGCTGGGAACCCGCAGGAAGCGGGCCTTaGTGGGGCTACTGCGGGTTCCTGCTGCAGGATATT +
Preference number: 6 (lower is better)
Translates to: KDARWEPAGSGP*WGYCGFLLQDI
Trigger: AATATCCTGCAGCAGGAACCCGCAGTAGCCCCACCAAGGCCCGCTTCCTGCGGGTTCCCAGCGAGCATCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp GGCAGCCTGGCCCAGTCGAGGGGAACAGCTACAGGATaGAGCAGACCAAAGCTGAGCACACAGCCCCCAGGA +
Preference number: 6 (lower is better)
Translates to: GSLAQSRGTATG*SRPKLSTQPPG
Trigger: TCCTGGGGGCTGTGTGCTCAGCTTTGGTCTGCTCAATCCTGTAGCTGTTCCCCTCGACTGGGCCAGGCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp CAGTCCCGAGTATGCGCTGCATGGCAGGCACCCGGGCGACACTCATaGATGTCTGCCTCACAGTGCAGACCTGTGTATCCTGGGGGACAG +
Preference number: 6 (lower is better)
Translates to: QSRVCAAWQAPGRHS*MSASQCRPVYPGGQ
Trigger: CTGTCCCCCAGGATACACAGGTCTGCACTGTGAGGCAGACATCAATGAGTGTCGCCCGGGTGCCTGCCATGCAGCGCATACTCGGGACTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp TGGAGCGCAGCAACTCTTCAGGAGGCAGAAGAACTGTaGGGACCAGAACCCCTCGGGCCAAAAGGGCCGGGA +
Preference number: 6 (lower is better)
Translates to: WSAATLQEAEEL*GPEPLGPKGPG
Trigger: TCCCGGCCCTTTTGGCCCGAGGGGTTCTGGTCCTCACAGTTCTTCTGCCTCCTGAAGAGTTGCTGCGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp ACGTTGACATCCACTCCGTCTGCATCTGCATCTCCCTaGGGAGGAGTCAGCGCTGTGGCTGGTGCCACACGG +
Preference number: 6 (lower is better)
Translates to: TLTSTPSASASP*GGVSAVAGATR
Trigger: CCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS GCA 72 bp CCACCCGGGCTCACAAACACAGCGGAACCCGCCTGGTaGATCATGGCAGACTCCATGACTACAGGGCTTGTG +
Preference number: 6 (lower is better)
Translates to: PPGLTNTAEPAW*IMADSMTTGLV
Trigger: CACAAGCCCTGTAGTCATGGAGTCTGCCATGATGCACCAGGCGGGTTCCGCTGTGTTTGTGAGCCCGGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp TGTCGCACAGGCGGCCACTCCATCCAGGTGGACAAATaGAGTAAGCCCCAGTCTGGACACAGCGACCCCCAT +
Preference number: 6 (lower is better)
Translates to: CRTGGHSIQVDK*SKPQSGHSDPH
Trigger: ATGGGGGTCGCTGTGTCCAGACTGGGGCTTACTGCATTTGTCCACCTGGATGGAGTGGCCGCCTGTGCGACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GTGTTGGGTCCACTGGCGACAGTCCTCAGGCTCCTCTaGACCCATGCCCGGCTCCTCTACCTTCAGTCTCTT +
Preference number: 6 (lower is better)
Translates to: VLGPLATVLRLL*THARLLYLQSL
Trigger: AAGAGACTGAAGGTAGAGGAGCCGGGCATGGGTGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GCCATCAGGCCCTCGGACGTTGACATCCACTCCGTCTaGATCTGCATCTCCCTGAGGAGGAGTCAGCGCTGT +
Preference number: 6 (lower is better)
Translates to: AIRPSDVDIHSV*ICISLRRSQRC
Trigger: ACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCCTGATGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp GTGTTGGGTCCACTGGCGACAGTCCTCAGGCTCCTCTaGACCCATGCCCGGCTCCTCTACCTTCAGTCTCNN +
Preference number: 6 (lower is better)
Translates to: VLGPLATVLRLL*THARLLYLQSX
Trigger: NNGAGACTGAAGGTAGAGGAGCCGGGCATGGGTGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235816.2
CDS CCA 72 bp GTCAGACTCACAGTGGCCTCCGTGCTCACAGAGGCTTaGAGTACAGGGGGACAGCACCTCACACTGATGGCC +
Preference number: 6 (lower is better)
Translates to: VRLTVASVLTEA*STGGQHLTLMA
Trigger: GGCCATCAGTGTGAGGTGCTGTCCCCCTGTACTCCAAGCCTCTGTGAGCACGGAGGCCACTGTGAGTCTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GGTGCCACACGGATATCAGCAGCAACCAGGTGGTGTTaGGTCCACTGGCGACAGTCCTCAGGCTCCTCTGCA +
Preference number: 6 (lower is better)
Translates to: GATRISAATRWC*VHWRQSSGSSA
Trigger: TGCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 72 bp CTAAGCCATGGGGACCAGAGGGACTTCGAGGTCCACTaGGCTGGTCCAGCAACCGCACAATGTCCTGGTGCA +
Preference number: 6 (lower is better)
Translates to: LSHGDQRDFEVH*AGPATAQCPGA
Trigger: TGCACCAGGACATTGTGCGGTTGCTGGACCAGCCCAGTGGACCTCGAAGTCCCTCTGGTCCCCATGGCTTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp GGTCAGACTCACAGTGGCCTCCGTGCTCACAGAGGCTaGGAGTACAGGGGGACAGCACCTCACACTGATGGC +
Preference number: 6 (lower is better)
Translates to: GQTHSGLRAHRG*EYRGTAPHTDG
Trigger: GCCATCAGTGTGAGGTGCTGTCCCCCTGTACTCCAAGCCTCTGTGAGCACGGAGGCCACTGTGAGTCTGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp TGGTGCCACACGGATATCAGCAGCAACCAGGTGGTGTaGGGTCCACTGGCGACAGTCCTCAGGCTCCTCTGC +
Preference number: 6 (lower is better)
Translates to: WCHTDISSNQVV*GPLATVLRLLC
Trigger: GCAGAGGAGCCTGAGGACTGTCGCCAGTGGACCCAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CAA 90 bp CCGGGAGGACAACGGCAGAGGTACTTGTCCACCAAGTCTAGACATTaGCCCCCATATCGACAGGGCTGGCTGCGGCACTCATCCACCTGG +
Preference number: 6 (lower is better)
Translates to: PGGQRQRYLSTKSRH*PPYRQGWLRHSSTW
Trigger: CCAGGTGGATGAGTGCCGCAGCCAGCCCTGTCGATATGGGGGCAAATGTCTAGACTTGGTGGACAAGTACCTCTGCCGTTGTCCTCCCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp TGGCCTGGTTGCGGCAGGGCCCGGAGAGACACTCATTaGCATCAGTCTCACAGCGAGGTCCAGTATAGCCAC +
Preference number: 6 (lower is better)
Translates to: WPGCGRARRDTH*HQSHSEVQYSH
Trigger: GTGGCTATACTGGACCTCGCTGTGAGACTGATGTCAATGAGTGTCTCTCCGGGCCCTGCCGCAACCAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp CCCACCAGGTCCACACAGGTGCCATTGTGTAGGCACTaGACGCCTGAGTCCAAGGATGGGCCTAGGTCACAG +
Preference number: 6 (lower is better)
Translates to: PTRSTQVPLCRH*TPESKDGPRSQ
Trigger: CTGTGACCTAGGCCCATCCTTGGACTCAGGCGTTCAGTGCCTACACAATGGCACCTGTGTGGACCTGGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp GTGTGTCACAGGCATAGGGGTCAGGCCCTCGGACGTTaGCATCCACTCCGTCTGCATCTGCATCTCCCTGAG +
Preference number: 6 (lower is better)
Translates to: VCHRHRGQALGR*HPLRLHLHLPE
Trigger: CTCAGGGAGATGCAGATGCAGACGGAGTGGATGTCAACGTCCGAGGGCCTGACCCCTATGCCTGTGACACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235816.2
CDS GCA 72 bp AAATGCCCACCTGGATCTTGTAGGCAGTCCCGAGTATaGGCTGCATGGCAGGCACCCGGGCGACACTCATTG +
Preference number: 6 (lower is better)
Translates to: KCPPGSCRQSRV*AAWQAPGRHSL
Trigger: CAATGAGTGTCGCCCGGGTGCCTGCCATGCAGCGCATACTCGGGACTGCCTACAAGATCCAGGTGGGCATTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp TGCATCTCCCTGAGGAGGAGTCAGCGCTGTGGCTGGTaGCACACGGATATCAGCAGCAACCAGGTGGTGTTG +
Preference number: 6 (lower is better)
Translates to: CISLRRSQRCGW*HTDISSNQVVL
Trigger: CAACACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 72 bp ACTCCACCCGGGCTCACAAACACAGCGGAACCCGCCTaGTGCATCATGGCAGACTCCATGACTACAGGGCTT +
Preference number: 6 (lower is better)
Translates to: TPPGLTNTAEPA*CIMADSMTTGL
Trigger: AAGCCCTGTAGTCATGGAGTCTGCCATGATGCACCAGGCGGGTTCCGCTGTGTTTGTGAGCCCGGGTGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CGCCATCCTGGCAGGAGCCACCATGGAGGCACGGGTTaGGGTCACAGTCGTCAATGTCTTGATCACAGAAGG +
Preference number: 6 (lower is better)
Translates to: RHPGRSHHGGTG*GHSRQCLDHRR
Trigger: CCTTCTGTGATCAAGACATTGACGACTGTGACCCCAACCCGTGCCTCCATGGTGGCTCCTGCCAGGATGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp ATCTGCATCTCCCTGAGGAGGAGTCAGCGCTGTGGCTaGTGCCACACGGATATCAGCAGCAACCAGGTGGTG +
Preference number: 6 (lower is better)
Translates to: ICISLRRSQRCG*CHTDISSNQVV
Trigger: CACCACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CCA 72 bp CTGCATCTGCATCTCCCTGAGGAGGAGTCAGCGCTGTaGCTGGTGCCACACGGATATCAGCAGCAACCAGGT +
Preference number: 6 (lower is better)
Translates to: LHLHLPEEESAL*LVPHGYQQQPG
Trigger: ACCTGGTTGCTGCTGATATCCGTGTGGCACCAGCCACAGCGCTGACTCCTCCTCAGGGAGATGCAGATGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087723.5
ENSMUST00000235816.2
CDS CAA 72 bp CTGAAGGAGCTCACGCCATCCACACAGGTCCCTCCATaGAAGCAGGAACTGGGGCTGCAGTCCGGCAAGTCA +
Preference number: 6 (lower is better)
Translates to: LKELTPSTQVPP*KQELGLQSGKS
Trigger: TGACTTGCCGGACTGCAGCCCCAGTTCCTGCTTCAATGGAGGGACCTGTGTGGATGGCGTGAGCTCCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp TTAGGCCATCACCTGCCTCTTGGGGGTAACTTCTGGTaGGGGTCCCAGCTGAGTCTGGGACTGAGGGAGGGA +
Preference number: 6 (lower is better)
Translates to: LGHHLPLGGNFW*GSQLSLGLREG
Trigger: TCCCTCCCTCAGTCCCAGACTCAGCTGGGACCCCAACCAGAAGTTACCCCCAAGAGGCAGGTGATGGCCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp CACAGACAGCTGAAGGAGCTCACGCCATCCACACAGGTCCCTCCATaGAAGCAGGAACTGGGGCTGCAGTCCGGCAAGTCAATCTCACAG +
Preference number: 6 (lower is better)
Translates to: HRQLKELTPSTQVPP*KQELGLQSGKSISQ
Trigger: CTGTGAGATTGACTTGCCGGACTGCAGCCCCAGTTCCTGCTTCAATGGAGGGACCTGTGTGGATGGCGTGAGCTCCTTCAGCTGTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp TGTCCCACAGGCTCCCTCCGGCCCTTGTGGCCAGCAGCTATGTCCTaGTGTAATGCAAAACCCTCAGGGAACCAGAGGGTGCTGTGTTCT +
Preference number: 6 (lower is better)
Translates to: CPTGSLRPLWPAAMS*CNAKPSGNQRVLCS
Trigger: AGAACACAGCACCCTCTGGTTCCCTGAGGGTTTTGCATTACACAAGGACATAGCTGCTGGCCACAAGGGCCGGAGGGAGCCTGTGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp CGGCAGGGAGTGCTTGCACACTCATCCACATCCAGCTaGCACATGGACCCACTGAATCCTGATGGGCAGGTG +
Preference number: 6 (lower is better)
Translates to: RQGVLAHSSTSS*HMDPLNPDGQV
Trigger: CACCTGCCCATCAGGATTCAGTGGGTCCATGTGTCAGCTGGATGTGGATGAGTGTGCAAGCACTCCCTGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp TATGCGCTGCATGGCAGGCACCCGGGCGACACTCATTaGTGTCTGCCTCACAGTGCAGACCTGTGTATCCTG +
Preference number: 6 (lower is better)
Translates to: YALHGRHPGDTH*CLPHSADLCIL
Trigger: CAGGATACACAGGTCTGCACTGTGAGGCAGACATCAATGAGTGTCGCCCGGGTGCCTGCCATGCAGCGCATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp AGTCTAGACATTTGCCCCCATATCGACAGGGCTGGCTaGGGCACTCATCCACCTGGCTCTCACAGCGTATGC +
Preference number: 6 (lower is better)
Translates to: SLDICPHIDRAG*GTHPPGSHSVC
Trigger: GCATACGCTGTGAGAGCCAGGTGGATGAGTGCCGCAGCCAGCCCTGTCGATATGGGGGCAAATGTCTAGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp AGTTACAGCGGAAGCCACCCACCAGGTCCACACAGGTaGCATTGTGTAGGCACTGAACGCCTGAGTCCAAGG +
Preference number: 6 (lower is better)
Translates to: SYSGSHPPGPHR*HCVGTERLSPR
Trigger: CCTTGGACTCAGGCGTTCAGTGCCTACACAATGGCACCTGTGTGGACCTGGTGGGTGGCTTCCGCTGTAACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp TTGTTGAAGAGACGCCAGCACTGCAGTGCCTCACACTaGCTCCAGGGGTCGTCCACGTTCAGTGAGCAGTCA +
Preference number: 6 (lower is better)
Translates to: LLKRRQHCSASH*LQGSSTFSEQS
Trigger: TGACTGCTCACTGAACGTGGACGACCCCTGGAGGCAGTGTGAGGCACTGCAGTGCTGGCGTCTCTTCAACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp AAGCGCAGTGAGGTGCGCAGAATAGCGCTGAGTCGCTaGAGAAAGTCGGCACTGGAGCGCAGCAACTCTTCA +
Preference number: 6 (lower is better)
Translates to: KRSEVRRIALSR*RKSALERSNSS
Trigger: TGAAGAGTTGCTGCGCTCCAGTGCCGACTTTCTGCAGCGACTCAGCGCTATTCTGCGCACCTCACTGCGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CAGACTCTCACCCTTGGCCATGTTCTTCATTCCCAGTaGATCTTGTCCCACAGGCTCCCTCCGGCCCTTGTG +
Preference number: 6 (lower is better)
Translates to: QTLTLGHVLHSQ*ILSHRLPPALV
Trigger: CACAAGGGCCGGAGGGAGCCTGTGGGACAAGATGCACTGGGAATGAAGAACATGGCCAAGGGTGAGAGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp ACCAAGTCTAGACATTTGCCCCCATATCGACAGGGCTaGCTGCGGCACTCATCCACCTGGCTCTCACAGCGT +
Preference number: 6 (lower is better)
Translates to: TKSRHLPPYRQG*LRHSSTWLSQR
Trigger: ACGCTGTGAGAGCCAGGTGGATGAGTGCCGCAGCCAGCCCTGTCGATATGGGGGCAAATGTCTAGACTTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp GCTTTGTATGTCGCACAGGCGGCCACTCCATCCAGGTaGACAAATGCAGTAAGCCCCAGTCTGGACACAGCG +
Preference number: 6 (lower is better)
Translates to: ALYVAQAATPSR*TNAVSPSLDTA
Trigger: CGCTGTGTCCAGACTGGGGCTTACTGCATTTGTCCACCTGGATGGAGTGGCCGCCTGTGCGACATACAAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CACCTCGTGTTCACAGTGACTACCCGTACGGCCCTCTaGACACACACAGTAGTGGGAGCGGCCCTTGTCTAT +
Preference number: 6 (lower is better)
Translates to: HLVFTVTTRTAL*THTVVGAALVY
Trigger: ATAGACAAGGGCCGCTCCCACTACTGTGTGTGTCCAGAGGGCCGTACGGGTAGTCACTGTGAACACGAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp GTATGCGCTGCATGGCAGGCACCCGGGCGACACTCATaGATGTCTGCCTCACAGTGCAGACCTGTGTATCCT +
Preference number: 6 (lower is better)
Translates to: VCAAWQAPGRHS*MSASQCRPVYP
Trigger: AGGATACACAGGTCTGCACTGTGAGGCAGACATCAATGAGTGTCGCCCGGGTGCCTGCCATGCAGCGCATAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp TCAGGGAAGCAGTGGTCATTCTCAGCTGACTGCAGACAGAGCCGGTaGTCAATCTCCAGCATCACCACAGAGCCGATCACCTCAGGACCC +
Preference number: 6 (lower is better)
Translates to: SGKQWSFSADCRQSR*SISSITTEPITSGP
Trigger: GGGTCCTGAGGTGATCGGCTCTGTGGTGATGCTGGAGATTGACAACCGGCTCTGTCTGCAGTCAGCTGAGAATGACCACTGCTTCCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CTGGACACACACAGTAGTGGGAGCGGCCCTTGTCTATaGACTTTCCACCTTCCTGACACAGCTGCTCCAACC +
Preference number: 6 (lower is better)
Translates to: LDTHSSGSGPCL*TFHLPDTAAPT
Trigger: GGTTGGAGCAGCTGTGTCAGGAAGGTGGAAAGTGCATAGACAAGGGCCGCTCCCACTACTGTGTGTGTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS GCA 72 bp CAAAGTGGTCGGCGCAGTACTTCTCATAAACAGGGTTaGAGGTGCGGTCGCGGCCACCAGAGTAGCAGTCAA +
Preference number: 6 (lower is better)
Translates to: QSGRRSTSHKQG*RCGRGHQSSSQ
Trigger: TTGACTGCTACTCTGGTGGCCGCGACCGCACCTGCAACCCTGTTTATGAGAAGTACTGCGCCGACCACTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp CAAGTAAACTGGCCAATTCGGTCAAGACACGTGGCCTaGTTGCGGCAGGGCCCGGAGAGACACTCATTGACA +
Preference number: 6 (lower is better)
Translates to: QVNWPIRSRHVA*LRQGPERHSLT
Trigger: TGTCAATGAGTGTCTCTCCGGGCCCTGCCGCAACCAGGCCACGTGTCTTGACCGAATTGGCCAGTTTACTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp ATTGATGTCTGCCTCACAGTGCAGACCTGTGTATCCTaGGGGACAGTTACAGCGGAAGCCACCCACCAGGTC +
Preference number: 6 (lower is better)
Translates to: IDVCLTVQTCVS*GTVTAEATHQV
Trigger: GACCTGGTGGGTGGCTTCCGCTGTAACTGTCCCCCAGGATACACAGGTCTGCACTGTGAGGCAGACATCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp CAACGGCAGAGGTACTTGTCCACCAAGTCTAGACATTaGCCCCCATATCGACAGGGCTGGCTGCGGCACTCA +
Preference number: 6 (lower is better)
Translates to: QRQRYLSTKSRH*PPYRQGWLRHS
Trigger: TGAGTGCCGCAGCCAGCCCTGTCGATATGGGGGCAAATGTCTAGACTTGGTGGACAAGTACCTCTGCCGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp GCAAGTTGTACCAGATCGGCACTCATCTATGTCACTTTGGCAGCTTaGACCCTGGTAGCCAGGTGGGCAGGCACAGGCAAATCGGCCATC +
Preference number: 6 (lower is better)
Translates to: ASCTRSALIYVTLAA*TLVARWAGTGKSAI
Trigger: GATGGCCGATTTGCCTGTGCCTGCCCACCTGGCTACCAGGGTCAAAGCTGCCAAAGTGACATAGATGAGTGCCGATCTGGTACAACTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp TCACAGTTCACACCTGTGGTTCCGGGAGGACAACGGCAGAGGTACTaGTCCACCAAGTCTAGACATTTGCCCCCATATCGACAGGGCTGG +
Preference number: 6 (lower is better)
Translates to: SQFTPVVPGGQRQRY*STKSRHLPPYRQGW
Trigger: CCAGCCCTGTCGATATGGGGGCAAATGTCTAGACTTGGTGGACAAGTACCTCTGCCGTTGTCCTCCCGGAACCACAGGTGTGAACTGTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp TTCTTCATTCCCAGTGCATCTTGTCCCACAGGCTCCCTCCGGCCCTaGTGGCCAGCAGCTATGTCCTTGTGTAATGCAAAACCCTCAGGG +
Preference number: 6 (lower is better)
Translates to: FFIPSASCPTGSLRP*WPAAMSLCNAKPSG
Trigger: CCCTGAGGGTTTTGCATTACACAAGGACATAGCTGCTGGCCACAAGGGCCGGAGGGAGCCTGTGGGACAAGATGCACTGGGAATGAAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp GCAAGTTGTACCAGATCGGCACTCATCTATGTCACTTaGGCAGCTTTGACCCTGGTAGCCAGGTGGGCAGGC +
Preference number: 6 (lower is better)
Translates to: ASCTRSALIYVT*AALTLVARWAG
Trigger: GCCTGCCCACCTGGCTACCAGGGTCAAAGCTGCCAAAGTGACATAGATGAGTGCCGATCTGGTACAACTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp ACCATGACGGCAAGTTGTACCAGATCGGCACTCATCTATGTCACTTaGGCAGCTTTGACCCTGGTAGCCAGGTGGGCAGGCACAGGCAAA +
Preference number: 6 (lower is better)
Translates to: TMTASCTRSALIYVT*AALTLVARWAGTGK
Trigger: TTTGCCTGTGCCTGCCCACCTGGCTACCAGGGTCAAAGCTGCCAAAGTGACATAGATGAGTGCCGATCTGGTACAACTTGCCGTCATGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 72 bp ACACCTGTGGTTCCGGGAGGACAACGGCAGAGGTACTaGTCCACCAAGTCTAGACATTTGCCCCCATATCGA +
Preference number: 6 (lower is better)
Translates to: TPVVPGGQRQRY*STKSRHLPPYR
Trigger: TCGATATGGGGGCAAATGTCTAGACTTGGTGGACAAGTACCTCTGCCGTTGTCCTCCCGGAACCACAGGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CAA 90 bp AATGAGCCCTGTGTATTCACACACCGACCCAAATGTTCACAGGGGTaGGCACCAATCGAGCACTCATCCACATCCTGGTCACATGCCCCT +
Preference number: 6 (lower is better)
Translates to: NEPCVFTHRPKCSQG*APIEHSSTSWSHAP
Trigger: AGGGGCATGTGACCAGGATGTGGATGAGTGCTCGATTGGTGCCAACCCCTGTGAACATTTGGGTCGGTGTGTGAATACACAGGGCTCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS CCA 72 bp TGTCCAGGACAGTCATCCACGTTGACTTCACAGTTCTaGCCCTCGAAGCCAGGAAGGCAAGCACAGTCATAT +
Preference number: 6 (lower is better)
Translates to: CPGQSSTLTSQF*PSKPGRQAQSY
Trigger: ATATGACTGTGCTTGCCTTCCTGGCTTCGAGGGCCAGAACTGTGAAGTCAACGTGGATGACTGTCCTGGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5
CDS TCA 72 bp CGGAAGGATCCAGGTGTATTGAGACAGGTACCACCATaGCGGCAAGTTGTACCAGATCGGCACTCATCTATG +
Preference number: 6 (lower is better)
Translates to: RKDPGVLRQVPP*RQVVPDRHSSM
Trigger: CATAGATGAGTGCCGATCTGGTACAACTTGCCGTCATGGTGGTACCTGTCTCAATACACCTGGATCCTTCCG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087723.5