Pregenerated sensors for NOPCHAP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020255

Ensembl transcript IDs: ENSMUST00000020488.9

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CTCCCGAACCCTCGCTCCCCGCCGTCAGCAGCTCCCTGGACACCGTaGCCTGCGAGCAGGCTACAGAAGACGAAGAAACACCAGGACCGG	+
Preference number: 5 (lower is better) Translates to: LPNPRSPPSAAPWTP*PASRLQKTKKHQDR Trigger: CCGGTCCTGGTGTTTCTTCGTCTTCTGTAGCCTGCTCGCAGGTCACGGTGTCCAGGGAGCTGCTGACGGCGGGGAGCGAGGGTTCGGGAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020488.9
CDS GCA 90 bp	GAACCCTCGCTCCCCGCCGTCAGCAGCTCCCTGGACACCGTGACCTaGGAGCAGGCTACAGAAGACGAAGAAACACCAGGACCGGTCCCG	+
Preference number: 5 (lower is better) Translates to: EPSLPAVSSSLDTVT*EQATEDEETPGPVP Trigger: CGGGACCGGTCCTGGTGTTTCTTCGTCTTCTGTAGCCTGCTCGCAGGTCACGGTGTCCAGGGAGCTGCTGACGGCGGGGAGCGAGGGTTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020488.9
CDS TCA 72 bp	CCTCGCTCCCCGCCGTCAGCAGCTCCCTGGACACCGTaGCCTGCGAGCAGGCTACAGAAGACGAAGAAACAC	+
Preference number: 6 (lower is better) Translates to: PRSPPSAAPWTP*PASRLQKTKKH Trigger: GTGTTTCTTCGTCTTCTGTAGCCTGCTCGCAGGTCACGGTGTCCAGGGAGCTGCTGACGGCGGGGAGCGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020488.9
CDS GCA 72 bp	CTCCCCGCCGTCAGCAGCTCCCTGGACACCGTGACCTaGGAGCAGGCTACAGAAGACGAAGAAACACCAGGA	+
Preference number: 6 (lower is better) Translates to: LPAVSSSLDTVT*EQATEDEETPG Trigger: TCCTGGTGTTTCTTCGTCTTCTGTAGCCTGCTCGCAGGTCACGGTGTCCAGGGAGCTGCTGACGGCGGGGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020488.9
CDS TCA 72 bp	TTCTCATTTGCCTGGGCCATTTGTGGGAGGAAGGCCTaGACCTGGTCTAGCAAAGGGCTCCTCTGCATCCGA	+
Preference number: 6 (lower is better) Translates to: FSFAWAICGRKA*TWSSKGLLCIR Trigger: TCGGATGCAGAGGAGCCCTTTGCTAGACCAGGTTCAGGCCTTCCTCCCACAAATGGCCCAGGCAAATGAGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020488.9
CDS CAA 72 bp	TGTCCCGAGAGCTCTCTTCTGGGCTATCCTCCTCTTTaGAATCTGACCGACTCATCTCAAATAAGGCCACAT	+
Preference number: 6 (lower is better) Translates to: CPESSLLGYPPL*NLTDSSQIRPH Trigger: ATGTGGCCTTATTTGAGATGAGTCGGTCAGATTCAAAAGAGGAGGATAGCCCAGAAGAGAGCTCTCGGGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020488.9

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