Pregenerated sensors for NOP56 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027405Ensembl transcript IDs: ENSMUST00000103198.11, ENSMUST00000136621.9, ENSMUST00000141872.2, ENSMUST00000143547.2, ENSMUST00000146454.9, ENSMUST00000149955.9, ENSMUST00000150401.8
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGTTGCCCTGGTCAGCCATCATTGTAATCCCCAAACAAAACAGTaGACACCAGAAGCAGCACCTGACATGAGCAGGCGCCCTCACTGG | + |
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Preference number: 1 (lower is better) Translates to: QVALVSHHCNPQTKQ*TPEAAPDMSRRPHW Trigger: CCAGTGAGGGCGCCTGCTCATGTCAGGTGCTGCTTCTGGTGTCCACTGTTTTGTTTGGGGATTACAATGATGGCTGACCAGGGCAACCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR TCA 90 bp | GGGGCTTGCTGCCTCTTCTGGTTCACTGGCCACTTCCTCCTTAGGTaGGGACTTCTTTCTCTTAGCACTGCTAGTGGCCATCTCTTCAAG | + |
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Preference number: 1 (lower is better) Translates to: GACCLFWFTGHFLLR*GLLSLSTASGHLFK Trigger: CTTGAAGAGATGGCCACTAGCAGTGCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTGGCCAGTGAACCAGAAGAGGCAGCAAGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| 3UTR-3UTR TCA 90 bp | CCTGAAGGGGGAATCAGACACGGGACATTGCTTACAATTGTTAGCAGCCACAGCTCACACTACCCCCGTTaGGGACTCCTGGGAGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: PEGGIRHGTLLTIVSSHSSHYPR*GLLGGS Trigger: GCTGCCTCCCAGGAGTCCTCAACGGGGGTAGTGTGA...GCTGTGGCTGCTAACAATTGTAAGCAATGTCCCGTGTCTGATTCCCCCTTCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| 3UTR-3UTR GCA 90 bp | TTTACCTCCTCACACTCCTCTGGGGTACTGCTGTTTTCTGACGAGGCCAGGGCCAGCAGCCGCTTCCTCTaGCTGAACCACAGCTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: FTSSHSSGVLLFSDEARASSRFL*LNHSFL Trigger: AAGGAAGCTGTGGTTCAGGCAGAGGAAGCGGCTGCT...GGCCCTGGCCTCGTCAGAAAACAGCAGTACCCCAGAGGAGTGTGAGGAGGTAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| 3UTR-3UTR TCA 90 bp | CCTGAAGGGGGAATCAGACACGGGACATTGCTTACAATTGTTAGCAGCCACAGCAAACTGTCACATTGGTaGCCTCCCTGCCCCCACCCC | + |
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Preference number: 2 (lower is better) Translates to: PEGGIRHGTLLTIVSSHSKLSHW*PPCPHP Trigger: GGGGTGGGGGCAGGGAGGTCACCAATGTGACAGTTT...GCTGTGGCTGCTAACAATTGTAAGCAATGTCCCGTGTCTGATTCCCCCTTCAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| 3UTR-3UTR CCA 90 bp | GACACCAGGACTGGCCATCACCCCCATAGCAGAGGCCTGTATAGGTCAGGTTGCCAAGGATCTGTACTGTaGACGCTGGATACTTGGCCA | + |
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Preference number: 2 (lower is better) Translates to: DTRTGHHPHSRGLYRSGCQGSVL*TLDTWP Trigger: TGGCCAAGTATCCAGCGTCCACAGTACAGATCCTTG...GCAACCTGACCTATACAGGCCTCTGCTATGGGGGTGATGGCCAGTCCTGGTGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCATTTACCTCCTCACACTCCTCTGGGGTACTGCTGTTTTCTGACGAGGCCAGCCGCTTCCTCTGCCTaGACCACAGCTTCCTTCATG | + |
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Preference number: 2 (lower is better) Translates to: FHLPPHTPLGYCCFLTRPAASSA*TTASFM Trigger: CATGAAGGAAGCTGTGGTTCAGGCAGAGGAAGCGGC...TGGCCTCGTCAGAAAACAGCAGTACCCCAGAGGAGTGTGAGGAGGTAAATGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| 3UTR-3UTR CCA 90 bp | TCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAATGAAGGTGGAATGCTGTACTGTGGACGCTaGATACTTGGCCAGGTTGGT | + |
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Preference number: 2 (lower is better) Translates to: SGDTAFVLCSCSANEGGMLYCGR*ILGQVG Trigger: ACCAACCTGGCCAAGTATCCAGCGTCCACAGTACAG...CATTCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR-3UTR GCA 90 bp | GCCACTTCCTCCTTAGGTGAGGACTTCTTTCTCTTAGCACTGCTAGTGGCCATCAGGACAGAGCACACTTaGCCATGGAATGGGCCATGT | + |
|
Preference number: 2 (lower is better) Translates to: ATSSLGEDFFLLALLVAIRTEHT*PWNGPC Trigger: ACATGGCCCATTCCATGGGCAAGTGTGCTCTGTCCT...GATGGCCACTAGCAGTGCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| 3UTR-3UTR TCA 90 bp | TTTCATTTACCTCCTCACACTCCTCTGGGGTACTGCTGTTTTCTGACGAGGCCACCACAGCTTCCTTCATaGCATCCAGGTTCTTCCGTG | + |
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Preference number: 2 (lower is better) Translates to: FHLPPHTPLGYCCFLTRPPQLPS*HPGSSV Trigger: CACGGAAGAACCTGGATGTCATGAAGGAAGCTGTGG...TGGCCTCGTCAGAAAACAGCAGTACCCCAGAGGAGTGTGAGGAGGTAAATGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| 3UTR-3UTR TCA 90 bp | TGTTTGCTAGGTATCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAATTTCCAGCTTTCTGGTaGTTTCAGCAGCCGCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: CLLGIGRYGLCSLQLLGQFPAFW*FQQPLP Trigger: AGGAAGCGGCTGCTGAAATCACCAGAAAGCTGGAAA...TTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGATACCTAGCAAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| 3UTR-3UTR GCA 90 bp | TGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTAGGGGTGGTGGGGCTTaGTGCCTCTTCTGGTTCACT | + |
|
Preference number: 2 (lower is better) Translates to: CAALCEVSSNFRLLRKFPRGGGA*CLFWFT Trigger: AGTGAACCAGAAGAGGCAGCAAGCCCCACCACCCCT...AGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| 3UTR-3UTR GCA 90 bp | GCCACTTCCTCCTTAGGTGAGGACTTCTTTCTCTTAGCACTGCTAGTGGCCATCTCAGACACGGGACATTaGTTACAATTGTTAGCAGCC | + |
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Preference number: 2 (lower is better) Translates to: ATSSLGEDFFLLALLVAISDTGH*LQLLAA Trigger: GGCTGCTAACAATTGTAAGCAATGTCCCGTGTCTGA...GATGGCCACTAGCAGTGCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| 3UTR-3UTR CCA 90 bp | TGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTCTCTTCAAGGTCACTaGCCAACTCCTCCTTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: CAALCEVSSNFRLLRKFPSLQGH*PTPPWE Trigger: CTCCCAAGGAGGAGTTGGCCAGTGACCTTGAAGAGA...AGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| 3UTR-3UTR GCA 90 bp | CTTTTTCTTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAATGGAATGGGCCATGTaGTACAACCAGCATTCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: LFLCAALCEVSSNFRLLRMEWAM*YNQHSG Trigger: CCCAGAATGCTGGTTGTAGCACATGGCCCATTCCAT...TCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAAGAAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| 3UTR-3UTR TCA 90 bp | TGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTCACTTCCTCCTTAGGTaGGGACTTCTTTCTCTTAGC | + |
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Preference number: 2 (lower is better) Translates to: CAALCEVSSNFRLLRKFPHFLLR*GLLSLS Trigger: GCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTG...AGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCAGAAGAGCAAACCTAGTACTTCTGGTGACTTAATGATCTACCTACTCTCAATGGAATGGGCCATGTaGTACAACCAGCATTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: RQKSKPSTSGDLMIYLLSMEWAM*YNQHSG Trigger: CCCAGAATGCTGGTTGTAGCACATGGCCCATTCCAT...TGAGAGTAGGTAGATCATTAAGTCACCAGAAGTACTAGGTTTGCTCTTCTGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| 3UTR-3UTR GCA 90 bp | TTTGTTCTTTGCAGCTGCTCGGCCAATGAAGGTGGAATGAAAAATGAGTCCATACTGTATAGGTCAGGTTaGCCTGGTCAGCCATCATTG | + |
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Preference number: 2 (lower is better) Translates to: FVLCSCSANEGGMKNESILYRSG*PGQPSL Trigger: CAATGATGGCTGACCAGGGCAACCTGACCTATACAG...TATGGACTCATTTTTCATTCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR-3UTR GCA 90 bp | AAGAGCAAACCTAGTACTTCTGGTGACTTAATGATCTACCTACTCTCACATTTTAGGACAGAGCACACTTaGCCATGGAATGGGCCATGT | + |
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Preference number: 2 (lower is better) Translates to: KSKPSTSGDLMIYLLSHFRTEHT*PWNGPC Trigger: ACATGGCCCATTCCATGGGCAAGTGTGCTCTGTCCT...AAAATGTGAGAGTAGGTAGATCATTAAGTCACCAGAAGTACTAGGTTTGCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| 3UTR-3UTR TCA 90 bp | CTTTTTCTTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGACAGGGAACACTGAAATaGAAATCACTAATAGCTCAA | + |
|
Preference number: 2 (lower is better) Translates to: LFLCAALCEVSSNFRLLRQGTLK*KSLIAQ Trigger: TTGAGCTATTAGTGATTTTCATTTCAGTGTTCCCTG...TCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAAGAAAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| 3UTR CCA 72 bp | TGTCTTCAGGGCTCTGGAAACTCGGTCCCCTTTTGCTaGGCCCTGGGAATCACTCAGACACCAGGACTGGCC | + |
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Preference number: 3 (lower is better) Translates to: CLQGSGNSVPFC*ALGITQTPGLA Trigger: GGCCAGTCCTGGTGTCTGAGTGATTCCCAGGGCCCAGCAAAAGGGGACCGAGTTTCCAGAGCCCTGAAGACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR GCA 72 bp | CCTTGTCTTCAGGGCTCTGGAAACTCGGTCCCCTTTTaGTGGGCCCTGGGAATCACTCAGACACCAGGACTG | + |
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Preference number: 3 (lower is better) Translates to: PCLQGSGNSVPF*WALGITQTPGL Trigger: CAGTCCTGGTGTCTGAGTGATTCCCAGGGCCCAGCAAAAGGGGACCGAGTTTCCAGAGCCCTGAAGACAAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR TCA 72 bp | TCCCCAAACAAAACAGTGGACACCAGAAGCAGCACCTaGCATGAGCAGGCGCCCTCACTGGTACCTGAACAG | + |
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Preference number: 3 (lower is better) Translates to: SPNKTVDTRSST*HEQAPSLVPEQ Trigger: CTGTTCAGGTACCAGTGAGGGCGCCTGCTCATGTCAGGTGCTGCTTCTGGTGTCCACTGTTTTGTTTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR-3UTR CAA 90 bp | TCACTGGCCACTTCCTCCTTAGGTGAGGACTTCTTTCTCTTAGCACTGCTAGTGTTCACACTACCCCCGTaGAGGACTCCTGGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: SLATSSLGEDFFLLALLVFTLPP*RTPGRQ Trigger: CTGCCTCCCAGGAGTCCTCAACGGGGGTAGTGTGAA...CACTAGCAGTGCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTGGCCAGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| 3UTR CCA 72 bp | CTGGTCAGCCATCATTGTAATCCCCAAACAAAACAGTaGACACCAGAAGCAGCACCTGACATGAGCAGGCGC | + |
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Preference number: 3 (lower is better) Translates to: LVSHHCNPQTKQ*TPEAAPDMSRR Trigger: GCGCCTGCTCATGTCAGGTGCTGCTTCTGGTGTCCACTGTTTTGTTTGGGGATTACAATGATGGCTGACCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR-3UTR CAA 90 bp | TTTGTTCTTTGCAGCTGCTCGGCCAATGAAGGTGGAATGAAAAATGAGTCCATAGTGGACGCTGGATACTaGGCCAGGTTGGTGAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: FVLCSCSANEGGMKNESIVDAGY*ARLVRL Trigger: CAGCCTCACCAACCTGGCCAAGTATCCAGCGTCCAC...TATGGACTCATTTTTCATTCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| 3UTR-3UTR CAA 90 bp | TTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCATTTACCTCCCCCGTaGAGGACTCCTGGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: FVLLFVKLAATSGSSENFHLPPP*RTPGRQ Trigger: CTGCCTCCCAGGAGTCCTCAACGGGGGAGGTAAATG...GAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000150401.8 |
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| 3UTR-3UTR CAA 90 bp | GTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTCTGGCCAACTCCTCCTaGGGAGCTTTCTTTTTCTTG | + |
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Preference number: 3 (lower is better) Translates to: VLLFVKLAATSGSSENFLLANSS*GAFFFL Trigger: CAAGAAAAAGAAAGCTCCCAAGGAGGAGTTGGCCAG...AAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| CDS-3UTR TCA 90 bp | ACAAAACAGTGGACACCAGAAGCAGCACCTGACATGAGCAGGCGCCCTCACTGGTGCCGCGCTCCGCACTaGCCCATGGAGGACCGAGAA | + |
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Preference number: 4 (lower is better) Translates to: TKQWTPEAAPDMSRRPHWCRAPH*PMEDRE Trigger: TTCTCGGTCCTCCATGGGTCAGTGCGGAGCGCGGCA...CCAGTGAGGGCGCCTGCTCATGTCAGGTGCTGCTTCTGGTGTCCACTGTTTTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| CDS-3UTR CCA 90 bp | CTGGAAACTCGGTCCCCTTTTGCTGGGCCCTGGGAATCACTCAGACACCAGGACCTCCGCACTGACCCATaGAGGACCGAGAAGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: LETRSPFAGPWESLRHQDLRTDP*RTEKHP Trigger: TGGATGCTTCTCGGTCCTCCATGGGTCAGTGCGGAG...GTCCTGGTGTCTGAGTGATTCCCAGGGCCCAGCAAAAGGGGACCGAGTTTCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| CDS-3UTR GCA 90 bp | CCTCCAGACACAGAACAGGGAGAGCAGGAATTCACACTACCCCCGTTGAGGACTCGAGGCCAGGGCCAGTaGAGCCAGTCGCTTCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: PPDTEQGEQEFTLPPLRTRGQGQ*SQSLLF Trigger: GAAAAGAAGCGACTGGCTGCACTGGCCCTGGCCTCG...AGTCCTCAACGGGGGTAGTGTGAATTCCTGCTCTCCCTGTTCTGTGTCTGGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| CDS-3UTR GCA 90 bp | CGAGGACAGAGCACACTTGCCCATGGAATGGGCCATGTGCTACAACCAGCATTCCGAGGCCAGGGCCAGTaGAGCCAGTCGCTTCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: RGQSTLAHGMGHVLQPAFRGQGQ*SQSLLF Trigger: GAAAAGAAGCGACTGGCTGCACTGGCCCTGGCCTCG...GAATGCTGGTTGTAGCACATGGCCCATTCCATGGGCAAGTGTGCTCTGTCCTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| CDS-3UTR CCA 90 bp | TCACACTCCTCTGGGGTACTGCTGTTTTCTGACGAGGCCAGGGCCAGTGCAGCCTTAAGGCTGACAGGCTaGGGGCTACTTGGCTCATCT | + |
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Preference number: 4 (lower is better) Translates to: SHSSGVLLFSDEARASAALRLTG*GLLGSS Trigger: AGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCTTAA...GGCTGCACTGGCCCTGGCCTCGTCAGAAAACAGCAGTACCCCAGAGGAGTGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| 3UTR CAA 72 bp | CCCTTGTCTTCAGGGCTCTGGAAACTCGGTCCCCTTTaGCTGGGCCCTGGGAATCACTCAGACACCAGGACT | + |
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Preference number: 4 (lower is better) Translates to: PLSSGLWKLGPL*LGPGNHSDTRT Trigger: AGTCCTGGTGTCTGAGTGATTCCCAGGGCCCAGCAAAAGGGGACCGAGTTTCCAGAGCCCTGAAGACAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143547.2 |
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| CDS-3UTR CCA 90 bp | TTTACCTCCTCACACTCCTCTGGGGTACTGCTGTTTTCTGACGAGGCCAGGGCCACCAGCTCTGGAAAGTaGTACCCATACCACTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: FTSSHSSGVLLFSDEARATSSGK*YPYHSL Trigger: CAGGGAGTGGTATGGGTACCACTTTCCAGAGCTGGT...GGCCCTGGCCTCGTCAGAAAACAGCAGTACCCCAGAGGAGTGTGAGGAGGTAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| CDS-3UTR TCA 90 bp | TTTCTTCTTAGGGGTGGTGGGGCTTGCTGCCTCTTCTGGTTCACTGGCCACTTCCCACAGCTTCCTTCATaGCATCCAGGTTCTTCCGTG | + |
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Preference number: 4 (lower is better) Translates to: FLLRGGGACCLFWFTGHFPQLPS*HPGSSV Trigger: CACGGAAGAACCTGGATGTCATGAAGGAAGCTGTGG...GAAGTGGCCAGTGAACCAGAAGAGGCAGCAAGCCCCACCACCCCTAAGAAGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| CDS-3UTR TCA 90 bp | GCCACTTCCTCCTTAGGTGAGGACTTCTTTCTCTTAGCACTGCTAGTGGCCATCGCCGCTTCCTCTGCCTaGACCACAGCTTCCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: ATSSLGEDFFLLALLVAIAASSA*TTASFM Trigger: CATGAAGGAAGCTGTGGTTCAGGCAGAGGAAGCGGC...GATGGCCACTAGCAGTGCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| CDS-3UTR CCA 90 bp | CCTCCAGACACAGAACAGGGAGAGCAGGAATTCACACTACCCCCGTTGAGGACTCTGTACTGTGGACGCTaGATACTTGGCCAGGTTGGT | + |
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Preference number: 4 (lower is better) Translates to: PPDTEQGEQEFTLPPLRTLYCGR*ILGQVG Trigger: ACCAACCTGGCCAAGTATCCAGCGTCCACAGTACAG...AGTCCTCAACGGGGGTAGTGTGAATTCCTGCTCTCCCTGTTCTGTGTCTGGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| CDS-3UTR TCA 90 bp | CCACAGCTCCCATTAGAATCCAGGCAGAAGAGCAAACCTAGTACTTCTGGTGACACTTGGCCAGGTTGGTaGGGCTGCCAGCATGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: PQLPLESRQKSKPSTSGDTWPGW*GCQHEQ Trigger: TTGCTCATGCTGGCAGCCTCACCAACCTGGCCAAGT...GTCACCAGAAGTACTAGGTTTGCTCTTCTGCCTGGATTCTAATGGGAGCTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
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| CDS-3UTR CCA 90 bp | CGAGGACAGAGCACACTTGCCCATGGAATGGGCCATGTGCTACAACCAGCATTCTTGTCTTCAGGGCTCTaGAAACTCGGTCCCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: RGQSTLAHGMGHVLQPAFLSSGL*KLGPLL Trigger: CAAAAGGGGACCGAGTTTCCAGAGCCCTGAAGACAA...GAATGCTGGTTGTAGCACATGGCCCATTCCATGGGCAAGTGTGCTCTGTCCTCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150401.8 |
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| CDS-3UTR TCA 90 bp | TCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAATGAAGGTGGAATGATGTGGCGTTGTCATTaGCGATCTTCACCAGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: SGDTAFVLCSCSANEGGMMWRCH*RSSPAL Trigger: CAGAGCTGGTGAAGATCGTCAATGACAACGCCACAT...CATTCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| CDS-3UTR TCA 90 bp | TGTTTGCTAGGTATCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAAGCTCTGGCGATACTCTaGCAAAGACACCACACGACT | + |
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Preference number: 4 (lower is better) Translates to: CLLGIGRYGLCSLQLLGQALAIL*QRHHTT Trigger: AGTCGTGTGGTGTCTTTGTCAGAGTATCGCCAGAGC...TTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGATACCTAGCAAACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
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| CDS-3UTR GCA 90 bp | TTTCTTCTTAGGGGTGGTGGGGCTTGCTGCCTCTTCTGGTTCACTGGCCACTTCTTTGTTCTTTGCAGCTaGTCGGCCAATGAAGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: FLLRGGGACCLFWFTGHFFVLCS*SANEGG Trigger: TCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAA...GAAGTGGCCAGTGAACCAGAAGAGGCAGCAAGCCCCACCACCCCTAAGAAGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| CDS-3UTR CCA 90 bp | TCACTGGCCACTTCCTCCTTAGGTGAGGACTTCTTTCTCTTAGCACTGCTAGTGCCTTTTGCTGGGCCCTaGGAATCACTCAGACACCAG | + |
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Preference number: 4 (lower is better) Translates to: SLATSSLGEDFFLLALLVPFAGP*ESLRHQ Trigger: CTGGTGTCTGAGTGATTCCCAGGGCCCAGCAAAAGG...CACTAGCAGTGCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTGGCCAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000150401.8 |
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| CDS-3UTR TCA 90 bp | GTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTGCCGCTTCCTCTGCCTaGACCACAGCTTCCTTCATG | + |
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Preference number: 4 (lower is better) Translates to: VLLFVKLAATSGSSENFLAASSA*TTASFM Trigger: CATGAAGGAAGCTGTGGTTCAGGCAGAGGAAGCGGC...AAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
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| CDS-3UTR GCA 90 bp | TCACTGGCCACTTCCTCCTTAGGTGAGGACTTCTTTCTCTTAGCACTGCTAGTGACGGCCTTTGTTCTTTaGAGCTGCTCGGCCAATGAA | + |
|
Preference number: 4 (lower is better) Translates to: SLATSSLGEDFFLLALLVTAFVL*SCSANE Trigger: TTCATTGGCCGAGCAGCTGCAAAGAACAAAGGCCGT...CACTAGCAGTGCTAAGAGAAAGAAGTCCTCACCTAAGGAGGAAGTGGCCAGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
||
| CDS-3UTR CCA 90 bp | TGTTTGCTAGGTATCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAAGATCTTCACCAGCTCTaGAAAGTGGTACCCATACCA | + |
|
Preference number: 4 (lower is better) Translates to: CLLGIGRYGLCSLQLLGQDLHQL*KVVPIP Trigger: TGGTATGGGTACCACTTTCCAGAGCTGGTGAAGATC...TTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGATACCTAGCAAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
||
| CDS-3UTR CCA 90 bp | TCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAATGAAGGTGGAATGCTACTTGGCTCATCTTaGAGCGAAGGTAAGTGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: SGDTAFVLCSCSANEGGMLLGSS*SEGKCV Trigger: TACACACTTACCTTCGCTCCAAGATGAGCCAAGTAG...CATTCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
||
| CDS-3UTR TCA 90 bp | TGCTTACAATTGTTAGCAGCCACAGCTCCCATTAGAATCCAGGCAGAAGAGCAACCACAGCTTCCTTCATaGCATCCAGGTTCTTCCGTG | + |
|
Preference number: 4 (lower is better) Translates to: CLQLLAATAPIRIQAEEQPQLPS*HPGSSV Trigger: CACGGAAGAACCTGGATGTCATGAAGGAAGCTGTGG...TTGCTCTTCTGCCTGGATTCTAATGGGAGCTGTGGCTGCTAACAATTGTAAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR TCA 90 bp | GTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTTTGTCTTCAGGGCTCTaGACAGGGCCTTTTCAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: VLLFVKLAATSGSSENFLLSSGL*TGPFQP Trigger: GGGCTGAAAAGGCCCTGTTCAGAGCCCTGAAGACAA...AAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR GCA 90 bp | CTTTTTCTTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAACTCGGTCCCCTTTTaGTGGGCCCTGGGAATCACT | + |
|
Preference number: 4 (lower is better) Translates to: LFLCAALCEVSSNFRLLRNSVPF*WALGIT Trigger: AGTGATTCCCAGGGCCCAGCAAAAGGGGACCGAGTT...TCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAAGAAAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000150401.8 |
||
| CDS-3UTR GCA 90 bp | GTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTAGCAGCCGCTTCCTCTaGCTGAACCACAGCTTCCTT | + |
|
Preference number: 4 (lower is better) Translates to: VLLFVKLAATSGSSENFLSSRFL*LNHSFL Trigger: AAGGAAGCTGTGGTTCAGGCAGAGGAAGCGGCTGCT...AAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
||
| CDS-3UTR CCA 90 bp | CCTGAAGGGGGAATCAGACACGGGACATTGCTTACAATTGTTAGCAGCCACAGCAAGACACCACACGACTaGAGAAGCTCTCGATGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: PEGGIRHGTLLTIVSSHSKTPHD*RSSRCL Trigger: TAAACATCGAGAGCTTCTCCAGTCGTGTGGTGTCTT...GCTGTGGCTGCTAACAATTGTAAGCAATGTCCCGTGTCTGATTCCCCCTTCAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR CCA 90 bp | TGTTTGCTAGGTATCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAAAAGACACCACACGACTaGAGAAGCTCTCGATGTTTA | + |
|
Preference number: 4 (lower is better) Translates to: CLLGIGRYGLCSLQLLGQKTPHD*RSSRCL Trigger: TAAACATCGAGAGCTTCTCCAGTCGTGTGGTGTCTT...TTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGATACCTAGCAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
||
| CDS-3UTR CCA 90 bp | CTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTTTCTTCTCGGTCCCCTTTTGCTaGGCCCTGGGAATCACTCAG | + |
|
Preference number: 4 (lower is better) Translates to: LFVKLAATSGSSENFLFFSVPFC*ALGITQ Trigger: CTGAGTGATTCCCAGGGCCCAGCAAAAGGGGACCGA...GAAGAAAAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000150401.8 |
||
| CDS-3UTR CCA 90 bp | TGCTTACAATTGTTAGCAGCCACAGCTCCCATTAGAATCCAGGCAGAAGAGCAACAAGGATCTGTACTGTaGACGCTGGATACTTGGCCA | + |
|
Preference number: 4 (lower is better) Translates to: CLQLLAATAPIRIQAEEQQGSVL*TLDTWP Trigger: TGGCCAAGTATCCAGCGTCCACAGTACAGATCCTTG...TTGCTCTTCTGCCTGGATTCTAATGGGAGCTGTGGCTGCTAACAATTGTAAGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR CCA 90 bp | TTTTTCTTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAATTAAGGCTGACAGGCTaGGGGCTACTTGGCTCATCT | + |
|
Preference number: 4 (lower is better) Translates to: FFFVLLFVKLAATSGSSELRLTG*GLLGSS Trigger: AGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCTTAA...TTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAAGAAAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR TCA 90 bp | AGGCAGAAGAGCAAACCTAGTACTTCTGGTGACTTAATGATCTACCTACTCTCATTTCCAGCTTTCTGGTaGTTTCAGCAGCCGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: RQKSKPSTSGDLMIYLLSFPAFW*FQQPLP Trigger: AGGAAGCGGCTGCTGAAATCACCAGAAAGCTGGAAA...TGAGAGTAGGTAGATCATTAAGTCACCAGAAGTACTAGGTTTGCTCTTCTGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR TCA 90 bp | CTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTTTCTTCGCTCTGGCGATACTCTaGCAAAGACACCACACGACT | + |
|
Preference number: 4 (lower is better) Translates to: LFVKLAATSGSSENFLFFALAIL*QRHHTT Trigger: AGTCGTGTGGTGTCTTTGTCAGAGTATCGCCAGAGC...GAAGAAAAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR TCA 90 bp | AAGAGCAAACCTAGTACTTCTGGTGACTTAATGATCTACCTACTCTCACATTTTTGCCAGCATGAGCAATaGGGCGTGCACCTACCGCTT | + |
|
Preference number: 4 (lower is better) Translates to: KSKPSTSGDLMIYLLSHFCQHEQ*GVHLPL Trigger: AAGCGGTAGGTGCACGCCTCATTGCTCATGCTGGCA...AAAATGTGAGAGTAGGTAGATCATTAAGTCACCAGAAGTACTAGGTTTGCTCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR GCA 90 bp | TTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCACGGCCTTTGTTCTTTaGAGCTGCTCGGCCAATGAA | + |
|
Preference number: 4 (lower is better) Translates to: FVLLFVKLAATSGSSENFTAFVL*SCSANE Trigger: TTCATTGGCCGAGCAGCTGCAAAGAACAAAGGCCGT...GAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
||
| CDS-3UTR GCA 90 bp | TTTTTCATTTACCTCCTGAAGGGGGAATCAGACACGGGACATTGCTTACAATTGTTTGTTCTTTGCAGCTaGTCGGCCAATGAAGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: FFIYLLKGESDTGHCLQLFVLCS*SANEGG Trigger: TCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAA...CAATTGTAAGCAATGTCCCGTGTCTGATTCCCCCTTCAGGAGGTAAATGAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR CCA 90 bp | TTTTTCTTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAACTACTTGGCTCATCTTaGAGCGAAGGTAAGTGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: FFFVLLFVKLAATSGSSELLGSS*SEGKCV Trigger: TACACACTTACCTTCGCTCCAAGATGAGCCAAGTAG...TTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAAGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS TCA 90 bp | ACTGTGGACGCTGGATACTTGGCCAGGTTGGTGAGGCTGCCAGCATaGGCAATGAGGCGTGCACCTACCGCTTCCCCAATTAAGGCTGAC | + |
|
Preference number: 5 (lower is better) Translates to: TVDAGYLARLVRLPA*AMRRAPTASPIKAD Trigger: GTCAGCCTTAATTGGGGAAGCGGTAGGTGCACGCCTCATTGCTCATGCTGGCAGCCTCACCAACCTGGCCAAGTATCCAGCGTCCACAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103198.11 ENSMUST00000146454.9 |
||
| CDS-3UTR CAA 90 bp | TTTCTTCTTAGGGGTGGTGGGGCTTGCTGCCTCTTCTGGTTCACTGGCCACTTCCGGGAGATACGGCCTTaGTTCTTTGCAGCTGCTCGG | + |
|
Preference number: 5 (lower is better) Translates to: FLLRGGGACCLFWFTGHFREIRP*FFAAAR Trigger: CCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCG...GAAGTGGCCAGTGAACCAGAAGAGGCAGCAAGCCCCACCACCCCTAAGAAGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000146454.9 ENSMUST00000150401.8 |
||
| CDS-3UTR CAA 90 bp | TCGGGAGATACGGCCTTTGTTCTTTGCAGCTGCTCGGCCAATGAAGGTGGAATGCAGGCTGGGGGCTACTaGGCTCATCTTGGAGCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: SGDTAFVLCSCSANEGGMQAGGY*AHLGAK Trigger: CTTCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTG...CATTCCACCTTCATTGGCCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
||
| CDS CCA 90 bp | TGGGATGAAGAGAAGGGACAGAAGGCCACCAGACGAACGACATTGTaGAATTTGCCAAGGTTAAGCACACATTCCTCCACCTGCGGCAGC | + |
|
Preference number: 5 (lower is better) Translates to: WDEEKGQKATRRTTL*NLPRLSTHSSTCGS Trigger: GCTGCCGCAGGTGGAGGAATGTGTGCTTAACCTTGGCAAATTCCACAATGTCGTTCGTCTGGTGGCCTTCTGTCCCTTCTCTTCATCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
||
| CDS CCA 90 bp | CAAGCGACAGTATGTGGCGTTGTCATTGACGATCTTCACCAGCTCTaGAAAGTGGTACCCATACCACTCCCTGACGCGCATCGAGAAGGT | + |
|
Preference number: 5 (lower is better) Translates to: QATVCGVVIDDLHQL*KVVPIPLPDAHREG Trigger: ACCTTCTCGATGCGCGTCAGGGAGTGGTATGGGTACCACTTTCCAGAGCTGGTGAAGATCGTCAATGACAACGCCACATACTGTCGCTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 |
||
| CDS CCA 90 bp | CTTCCCCAATTAAGGCTGACAGGCTGGGGGCTACTTGGCTCATCTTaGAGCGAAGGTAAGTGTGTAGGCTCTGGCGATACTCTGACAAAG | + |
|
Preference number: 5 (lower is better) Translates to: LPQLRLTGWGLLGSS*SEGKCVGSGDTLTK Trigger: CTTTGTCAGAGTATCGCCAGAGCCTACACACTTACCTTCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCTTAATTGGGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000146454.9 ENSMUST00000149955.9 |
||
| CDS-3UTR CAA 90 bp | CCACAGCTCCCATTAGAATCCAGGCAGAAGAGCAAACCTAGTACTTCTGGTGACCGGGAGATACGGCCTTaGTTCTTTGCAGCTGCTCGG | + |
|
Preference number: 5 (lower is better) Translates to: PQLPLESRQKSKPSTSGDREIRP*FFAAAR Trigger: CCGAGCAGCTGCAAAGAACAAAGGCCGTATCTCCCG...GTCACCAGAAGTACTAGGTTTGCTCTTCTGCCTGGATTCTAATGGGAGCTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR CAA 90 bp | TGCTTACAATTGTTAGCAGCCACAGCTCCCATTAGAATCCAGGCAGAAGAGCAACAGGCTGGGGGCTACTaGGCTCATCTTGGAGCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: CLQLLAATAPIRIQAEEQQAGGY*AHLGAK Trigger: CTTCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTG...TTGCTCTTCTGCCTGGATTCTAATGGGAGCTGTGGCTGCTAACAATTGTAAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR CAA 90 bp | GTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTAAACTCGGTCCCCTTTaGCTGGGCCCTGGGAATCAC | + |
|
Preference number: 5 (lower is better) Translates to: VLLFVKLAATSGSSENFLKLGPL*LGPGNH Trigger: GTGATTCCCAGGGCCCAGCAAAAGGGGACCGAGTTT...AAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000150401.8 |
||
| CDS-3UTR CAA 90 bp | CCACAGCTCCCATTAGAATCCAGGCAGAAGAGCAAACCTAGTACTTCTGGTGACTTTCCCCAAATACACTaGTGGGGACCTCAGAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: PQLPLESRQKSKPSTSGDFPQIH*WGPQRS Trigger: GCTTCTCTGAGGTCCCCACAAGTGTATTTGGGGAAA...GTCACCAGAAGTACTAGGTTTGCTCTTCTGCCTGGATTCTAATGGGAGCTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS-3UTR CAA 90 bp | TTTGTGCTGCTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCGTGGACGCTGGATACTaGGCCAGGTTGGTGAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: FVLLFVKLAATSGSSENFVDAGY*ARLVRL Trigger: CAGCCTCACCAACCTGGCCAAGTATCCAGCGTCCAC...GAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAGCAGCACAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146454.9 |
||
| CDS TCA 90 bp | TTCTCTAACTTCTCTTCATTCAGCTCCCTGCGGTTCCCAATGAACTaGGCCAAGCGACAGTATGTGGCGTTGTCATTGACGATCTTCACC | + |
|
Preference number: 5 (lower is better) Translates to: FSNFSSFSSLRFPMN*AKRQYVALSLTIFT Trigger: GGTGAAGATCGTCAATGACAACGCCACATACTGTCGCTTGGCTCAGTTCATTGGGAACCGCAGGGAGCTGAATGAAGAGAAGTTAGAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000149955.9 |
||
| CDS-3UTR CAA 90 bp | TTTCATTTACCTCCTCACACTCCTCTGGGGTACTGCTGTTTTCTGACGAGGCCATATGTGGCGTTGTCATaGACGATCTTCACCAGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: FHLPPHTPLGYCCFLTRPYVALS*TIFTSS Trigger: AGAGCTGGTGAAGATCGTCAATGACAACGCCACATA...TGGCCTCGTCAGAAAACAGCAGTACCCCAGAGGAGTGTGAGGAGGTAAATGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
||
| CDS-3UTR CAA 90 bp | CTCTTTGTGAAGTTAGCAGCAACTTCAGGCTCCTCAGAAAATTTCCTTTTCTTCTTGGTGTGTTACCCCTaGTCTTCAGGGCTCTGGAAA | + |
|
Preference number: 5 (lower is better) Translates to: LFVKLAATSGSSENFLFFLVCYP*SSGLWK Trigger: TTTCCAGAGCCCTGAAGACAAGGGGTAACACACCAA...GAAGAAAAGGAAATTTTCTGAGGAGCCTGAAGTTGCTGCTAACTTCACAAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000150401.8 |
||
| CDS TCA 90 bp | AAGGTATTGATATCTTTATCCAGTTGGTCCAGGAGGCTTATGGACTaGATAATCATGTTGTCCACTCGGTTCACATTAAATTTAACTTTG | + |
|
Preference number: 5 (lower is better) Translates to: KVLISLSSWSRRLMD*IIMLSTRFTLNLTL Trigger: CAAAGTTAAATTTAATGTGAACCGAGTGGACAACATGATTATTCAGTCCATAAGCCTCCTGGACCAACTGGATAAAGATATCAATACCTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 |
||
| CDS CCA 72 bp | GTGCACCTACCGCTTCCCCAATTAAGGCTGACAGGCTaGGGGCTACTTGGCTCATCTTGGAGCGAAGGTAAG | + |
|
Preference number: 6 (lower is better) Translates to: VHLPLPQLRLTG*GLLGSSWSEGK Trigger: CTTACCTTCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCTTAATTGGGGAAGCGGTAGGTGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103198.11 ENSMUST00000146454.9 |
||
| CDS CCA 72 bp | CTTCAGGGCTCGCTTCCCCAATTAAGGCTGACAGGCTaGGGGCTACTTGGCTCATCTTGGAGCGAAGGTAAG | + |
|
Preference number: 6 (lower is better) Translates to: LQGSLPQLRLTG*GLLGSSWSEGK Trigger: CTTACCTTCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCTTAATTGGGGAAGCGAGCCCTGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149955.9 |
||
| CDS CAA 90 bp | GAAGAGAAGGGACAGAAGGCCACCAGACGAACGACATTGTGGAATTaGCCAAGGTTAAGCACACATTCCTCCACCTGCGGCAGCAGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: EEKGQKATRRTTLWN*PRLSTHSSTCGSSR Trigger: CCTGCTGCTGCCGCAGGTGGAGGAATGTGTGCTTAACCTTGGCAAATTCCACAATGTCGTTCGTCTGGTGGCCTTCTGTCCCTTCTCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
||
| CDS CCA 72 bp | TTAAGGCTGACAGGCTGGGGGCTACTTGGCTCATCTTaGAGCGAAGGTAAGTGTGTAGGCTCTGGCGATACT | + |
|
Preference number: 6 (lower is better) Translates to: LRLTGWGLLGSS*SEGKCVGSGDT Trigger: AGTATCGCCAGAGCCTACACACTTACCTTCGCTCCAAGATGAGCCAAGTAGCCCCCAGCCTGTCAGCCTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000146454.9 ENSMUST00000149955.9 |
||
| CDS CAA 72 bp | GGACAGAAGGCCACCAGACGAACGACATTGTGGAATTaGCCAAGGTTAAGCACACATTCCTCCACCTGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: GQKATRRTTLWN*PRLSTHSSTCG Trigger: GCCGCAGGTGGAGGAATGTGTGCTTAACCTTGGCAAATTCCACAATGTCGTTCGTCTGGTGGCCTTCTGTCC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
||
| CDS CAA 90 bp | ACCTGGGATGAAGAGAAGGGACAGAAGGCCACCAGACGAACGACATaGTGGAATTTGCCAAGGTTAAGCACACATTCCTCCACCTGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: TWDEEKGQKATRRTT*WNLPRLSTHSSTCG Trigger: GCCGCAGGTGGAGGAATGTGTGCTTAACCTTGGCAAATTCCACAATGTCGTTCGTCTGGTGGCCTTCTGTCCCTTCTCTTCATCCCAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
||
| CDS CCA 72 bp | GTATGTGGCGTTGTCATTGACGATCTTCACCAGCTCTaGAAAGTGGTACCCATACCACTCCCTGACGCGCAT | + |
|
Preference number: 6 (lower is better) Translates to: VCGVVIDDLHQL*KVVPIPLPDAH Trigger: ATGCGCGTCAGGGAGTGGTATGGGTACCACTTTCCAGAGCTGGTGAAGATCGTCAATGACAACGCCACATAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000149955.9 |
||
| CDS CAA 90 bp | CGAACTCCTCGAAGGATCTCAGCTATCACACCACCAGTCTGGCAGTaGTACCCCAACTCTTCCTGTATTGCAGCACCAATCTTGGGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: RTPRRISAITPPVWQ*YPNSSCIAAPILGS Trigger: AGACCCCAAGATTGGTGCTGCAATACAGGAAGAGTTGGGGTACAACTGCCAGACTGGTGGTGTGATAGCTGAGATCCTTCGAGGAGTTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
||
| CDS TCA 72 bp | TTCTCTTCATTCAGCTCCCTGCGGTTCCCAATGAACTaGGCCAAGCGACAGTATGTGGCGTTGTCATTGACG | + |
|
Preference number: 6 (lower is better) Translates to: FSSFSSLRFPMN*AKRQYVALSLT Trigger: CGTCAATGACAACGCCACATACTGTCGCTTGGCTCAGTTCATTGGGAACCGCAGGGAGCTGAATGAAGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000149955.9 |
||
| CDS CCA 72 bp | GAGAAGGGACAGAAGGCCACCAGACGAACGACATTGTaGAATTTGCCAAGGTTAAGCACACATTCCTCCACC | + |
|
Preference number: 6 (lower is better) Translates to: EKGQKATRRTTL*NLPRLSTHSST Trigger: GGTGGAGGAATGTGTGCTTAACCTTGGCAAATTCCACAATGTCGTTCGTCTGGTGGCCTTCTGTCCCTTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
||
| CDS TCA 72 bp | CTAACTTCTCTTCATTCAGCTCCCTGCGGTTCCCAATaGACTGAGCCAAGCGACAGTATGTGGCGTTGTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LTSLHSAPCGSQ*TEPSDSMWRCH Trigger: ATGACAACGCCACATACTGTCGCTTGGCTCAGTTCATTGGGAACCGCAGGGAGCTGAATGAAGAGAAGTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000149955.9 |
||
| CDS CAA 72 bp | GAAGAGAAGGGACAGAAGGCCACCAGACGAACGACATaGTGGAATTTGCCAAGGTTAAGCACACATTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: EEKGQKATRRTT*WNLPRLSTHSS Trigger: GGAGGAATGTGTGCTTAACCTTGGCAAATTCCACAATGTCGTTCGTCTGGTGGCCTTCTGTCCCTTCTCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
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| CDS CCA 72 bp | TGTACCCCAACTCTTCCTGTATTGCAGCACCAATCTTaGGGTCTCCAACCCCCAGAAGTACTTTCTTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: CTPTLPVLQHQS*GLQPPEVLSSF Trigger: AAAAGAAGAAAGTACTTCTGGGGGTTGGAGACCCCAAGATTGGTGCTGCAATACAGGAAGAGTTGGGGTACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
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| CDS GCA 72 bp | GAAAGATCTGTCAGACCCTTCACCAGATTATGGAAATaGAGACGAACTCCTCGAAGGATCTCAGCTATCACA | + |
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Preference number: 6 (lower is better) Translates to: ERSVRPFTRLWK*RRTPRRISAIT Trigger: TGTGATAGCTGAGATCCTTCGAGGAGTTCGTCTGCATTTCCATAATCTGGTGAAGGGTCTGACAGATCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000103198.11 ENSMUST00000136621.9 ENSMUST00000141872.2 |
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