Pregenerated sensors for NOP16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025869Ensembl transcript IDs: ENSMUST00000026987.12, ENSMUST00000148222.2, ENSMUST00000149462.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCTCCTTACCCTTCTATGTCAGCCCAGGCCTCCCGGAGAGTGTCTaGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGG | + |
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Preference number: 1 (lower is better) Translates to: GSLPFYVSPGLPESV*RKPRLGALTRKKAR Trigger: CCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCCTGGGCTGACATAGAAGGGTAAGGAGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR CCA 90 bp | ATGGCCAACCCCATCTCCGCCAGGTTCTGCCGCACGGATTTGGTGTaGTCCCAGGCATGTCGTATGTGGGAACTAACATCAAAGAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: MANPISARFCRTDLV*SQACRMWELTSKRE Trigger: CTCTCTCTTTGATGTTAGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCTGGCGGAGATGGGGTTGGCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR TCA 90 bp | GCCCCGGCTTTCTGTAAGCTCCCAACAGAACACAAACCATGGCCTTaGAAGAGTTCCTTCTCCAGGTGGTGGTGGTGCACGCCTTTAATC | + |
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Preference number: 1 (lower is better) Translates to: APAFCKLPTEHKPWP*KSSFSRWWWCTPLI Trigger: GATTAAAGGCGTGCACCACCACCACCTGGAGAAGGAACTCTTTCAAGGCCATGGTTTGTGTTCTGTTGGGAGCTTACAGAAAGCCGGGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR CCA 90 bp | AGGTTCTGCCGCACGGATTTGGTGTGGTCCCAGGCATGTCGTATGTaGGAACTAACATCAAAGAGAGAGAGAGAAATCGAGATTCTGTCA | + |
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Preference number: 1 (lower is better) Translates to: RFCRTDLVWSQACRM*ELTSKREREIEILS Trigger: TGACAGAATCTCGATTTCTCTCTCTCTCTTTGATGTTAGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR CCA 90 bp | TGGGTAAAAGCGCTTATAGACATTGATCTTATTCCGGATCTGTTTTaGGGTGTCTTGGTAGTAATTCTTCTCATCCCGGGCCATGGCCTT | + |
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Preference number: 1 (lower is better) Translates to: WVKALIDIDLIPDLF*GVLVVILLIPGHGL Trigger: AAGGCCATGGCCCGGGATGAGAAGAATTACTACCAAGACACCCCAAAACAGATCCGGAATAAGATCAATGTCTATAAGCGCTTTTACCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAGATCCCGGGGTCGCTCCTCCGTGTCTACCTCCATGGCCTTTACCTTCTTCTCTGCCGCACGGATTTaGTGTGGTCCCAGGCATGTC | + |
|
Preference number: 2 (lower is better) Translates to: TRSRGRSSVSTSMAFTFFSAARI*CGPRHV Trigger: GACATGCCTGGGACCACACCAAATCCGTGCGGCAGA...GAAGAAGGTAAAGGCCATGGAGGTAGACACGGAGGAGCGACCCCGGGATCTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR-3UTR CCA 90 bp | CCCGGGCCATGGCCTTGTAGTCCTCCCCGTGATTCTCTACCATGTACCGCACATTCTTCTCTGGGAGGCTaGCTTCTGCCTCCAGGTCAT | + |
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Preference number: 2 (lower is better) Translates to: PGPWPCSPPRDSLPCTAHSSLGG*LLPPGH Trigger: ATGACCTGGAGGCAGAAGCCAGCCTCCCAGAGAAGA...ATGTGCGGTACATGGTAGAGAATCACGGGGAGGACTACAAGGCCATGGCCCGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAAGCAATCCACAGTGAGCAGAGACCTGGCTCCTTACCCTTCTATGTCAGCCAACAGAGCATCCCTCTaGAAAGAAACAGCAGGCCCC | + |
|
Preference number: 2 (lower is better) Translates to: KKQSTVSRDLAPYPSMSANRASL*KETAGP Trigger: GGGGCCTGCTGTTTCTTTTCAGAGGGATGCTCTGTT...GGCTGACATAGAAGGGTAAGGAGCCAGGTCTCTGCTCACTGTGGATTGCTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR CAA 90 bp | GCGCTTATAGACATTGATCTTATTCCGGATCTGTTTTGGGGTGTCTaGGTAGTAATTCTTCTCATCCCGGGCCATGGCCTTGTAGTCCTC | + |
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Preference number: 2 (lower is better) Translates to: ALIDIDLIPDLFWGV*VVILLIPGHGLVVL Trigger: GAGGACTACAAGGCCATGGCCCGGGATGAGAAGAATTACTACCAAGACACCCCAAAACAGATCCGGAATAAGATCAATGTCTATAAGCGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR-3UTR CCA 90 bp | ATAGACATTGATCTTATTCCGGATCTGTTTTGGGGTGTCTTGGTAGTAATTCTTCGCACGGATTTGGTGTaGTCCCAGGCATGTCGTATG | + |
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Preference number: 2 (lower is better) Translates to: IDIDLIPDLFWGVLVVILRTDLV*SQACRM Trigger: CATACGACATGCCTGGGACCACACCAAATCCGTGCG...AAGAATTACTACCAAGACACCCCAAAACAGATCCGGAATAAGATCAATGTCTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR CAA 90 bp | TCAGTCTACCTCCATCTTCTTACTCTGCAGAGAATCGATGAAGGCTaGCCACTCCGTTGGGTAAAAGCGCTTATAGACATTGATCTTATT | + |
|
Preference number: 2 (lower is better) Translates to: SVYLHLLTLQRIDEG*PLRWVKALIDIDLI Trigger: AATAAGATCAATGTCTATAAGCGCTTTTACCCAACGGAGTGGCAAGCCTTCATCGATTCTCTGCAGAGTAAGAAGATGGAGGTAGACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCCTTTATCATGTACAGAACAAGCTGAAACAGAGCATCCCTCTGAAAAGAAAAGTTCCTTCTCCAGGTaGTGGTGGTGCACGCCTTTA | + |
|
Preference number: 2 (lower is better) Translates to: IPLSCTEQAETEHPSEKKSSFSR*WWCTPL Trigger: TAAAGGCGTGCACCACCACCACCTGGAGAAGGAACT...TTTCTTTTCAGAGGGATGCTCTGTTTCAGCTTGTTCTGTACATGATAAAGGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR CCA 72 bp | CCCTTCTATGTCAGCCCAGGCCTCCCGGAGAGTGTCTaGAGGAAACCGAGACTAGGAGCACTGACGAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: PFYVSPGLPESV*RKPRLGALTRK Trigger: CTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCCTGGGCTGACATAGAAGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| 3UTR CCA 72 bp | CAAGATCCCGGGGTCGCTCCTCCGTGTCTACCTCCATaGCCTTTACCTTCTTCTTACGGAGGGGAACCGCCT | + |
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Preference number: 3 (lower is better) Translates to: QDPGVAPPCLPP*PLPSSYGGEPP Trigger: AGGCGGTTCCCCTCCGTAAGAAGAAGGTAAAGGCCATGGAGGTAGACACGGAGGAGCGACCCCGGGATCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR CCA 72 bp | CAGGCCACTGCTTGCAAGAGTCCTGCCAACAGAAGATaGCCATGCCATGGAAAGCCTAGCAGTGGCACACGG | + |
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Preference number: 3 (lower is better) Translates to: QATACKSPANRR*PCHGKPSSGTR Trigger: CCGTGTGCCACTGCTAGGCTTTCCATGGCATGGCCATCTTCTGTTGGCAGGACTCTTGCAAGCAGTGGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR CCA 72 bp | CCCATCTCCGCCAGGTTCTGCCGCACGGATTTGGTGTaGTCCCAGGCATGTCGTATGTGGGAACTAACATCA | + |
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Preference number: 3 (lower is better) Translates to: PISARFCRTDLV*SQACRMWELTS Trigger: TGATGTTAGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCTGGCGGAGATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR-3UTR CAA 90 bp | CTAGGTCTGGGGGTGTGCCCCACTCAGTCTACCTCCATCTTCTTACTCTGCAGAAGGCTTGCCACTCCGTaGGGTAAAAGCGCTTATAGA | + |
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Preference number: 3 (lower is better) Translates to: LGLGVCPTQSTSIFLLCRRLATP*GKSAYR Trigger: TCTATAAGCGCTTTTACCCAACGGAGTGGCAAGCCT...TCTGCAGAGTAAGAAGATGGAGGTAGACTGAGTGGGGCACACCCCCAGACCTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR TCA 72 bp | GCCGGTCCCAGATGGCAAGTTTGGGTCCCTGATGTTTaGTTTAAGCCATGGCCAACAAAAAGCAATCCACAG | + |
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Preference number: 3 (lower is better) Translates to: AGPRWQVWVPDV*FKPWPTKSNPQ Trigger: CTGTGGATTGCTTTTTGTTGGCCATGGCTTAAATCAAACATCAGGGACCCAAACTTGCCATCTGGGACCGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR CCA 72 bp | CGCACGGATTTGGTGTGGTCCCAGGCATGTCGTATGTaGGAACTAACATCAAAGAGAGAGAGAGAAATCGAG | + |
|
Preference number: 3 (lower is better) Translates to: RTDLVWSQACRM*ELTSKREREIE Trigger: CTCGATTTCTCTCTCTCTCTTTGATGTTAGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR-3UTR CAA 90 bp | CAGAGTAGGTATCACATTCTCAGGCCACTGCTTGCAAGAGTCCTGCCAACAGAAACACAAACCATGGCCTaGAAAGAGTTCCTTCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: QSRYHILRPLLARVLPTETQTMA*KEFLLQ Trigger: CTGGAGAAGGAACTCTTTCAAGGCCATGGTTTGTGT...TTCTGTTGGCAGGACTCTTGCAAGCAGTGGCCTGAGAATGTGATACCTACTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR TCA 72 bp | AGTCTACCTCCATCTTCTTACTCTGCAGAGAATCGATaGAGGCTTGCCACTCCGTTGGGTAAAAGCGCTTAT | + |
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Preference number: 3 (lower is better) Translates to: SLPPSSYSAENR*RLATPLGKSAY Trigger: ATAAGCGCTTTTACCCAACGGAGTGGCAAGCCTTCATCGATTCTCTGCAGAGTAAGAAGATGGAGGTAGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| 3UTR CCA 72 bp | GCGCTTATAGACATTGATCTTATTCCGGATCTGTTTTaGGGTGTCTTGGTAGTAATTCTTCTCATCCCGGGC | + |
|
Preference number: 3 (lower is better) Translates to: ALIDIDLIPDLF*GVLVVILLIPG Trigger: GCCCGGGATGAGAAGAATTACTACCAAGACACCCCAAAACAGATCCGGAATAAGATCAATGTCTATAAGCGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| CDS-3UTR CCA 90 bp | GGCCTCCCGGAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGCCTTGTTGGGGTCCATaGCCAACCCCATCTCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: GLPESVWRKPRLGALTRKPCWGP*PTPSPP Trigger: TGGCGGAGATGGGGTTGGCCATGGACCCCAACAAGG...CTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| 3UTR CAA 72 bp | GCCAACCCCATCTCCGCCAGGTTCTGCCGCACGGATTaGGTGTGGTCCCAGGCATGTCGTATGTGGGAACTA | + |
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Preference number: 4 (lower is better) Translates to: ANPISARFCRTD*VWSQACRMWEL Trigger: TAGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCTGGCGGAGATGGGGTTGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| CDS-3UTR CCA 90 bp | GGCCTCCCGGAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGTCTTCTCTGGGAGGCTaGCTTCTGCCTCCAGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: GLPESVWRKPRLGALTRKSSLGG*LLPPGH Trigger: ATGACCTGGAGGCAGAAGCCAGCCTCCCAGAGAAGA...CTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CCA 90 bp | ACAAGATCCCGGGGTCGCTCCTCCGTGTCTACCTCCATGGCCTTTACCTTCTTCTCACCACTCAATCCGTaGCGCTGCCTTCCGACGAGC | + |
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Preference number: 4 (lower is better) Translates to: TRSRGRSSVSTSMAFTFFSPLNP*RCLPTS Trigger: GCTCGTCGGAAGGCAGCGCCACGGATTGAGTGGTGA...GAAGAAGGTAAAGGCCATGGAGGTAGACACGGAGGAGCGACCCCGGGATCTTGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| CDS-3UTR GCA 90 bp | GAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGGCACTCAATCCGTGGCGCTaGCTTCCGACGAGCATTCCG | + |
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Preference number: 4 (lower is better) Translates to: ECLEETETRSTDEEEGKALNPWR*LPTSIP Trigger: CGGAATGCTCGTCGGAAGGCAGCGCCACGGATTGAG...TGCCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CCA 90 bp | GAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGGGGAACACTCAATCCGTaGCGCTGCCTTCCGACGAGC | + |
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Preference number: 4 (lower is better) Translates to: ESVWRKPRLGALTRKKARGTLNP*RCLPTS Trigger: GCTCGTCGGAAGGCAGCGCCACGGATTGAGTGTTCC...CCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR TCA 90 bp | GGCCTCCCGGAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGTCAGACGCTTTCGGTTaGCGTTGTAACCGAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: GLPESVWRKPRLGALTRKSDAFG*RCNRTS Trigger: AGAAGTTCGGTTACAACGTCAACCGAAAGCGTCTGA...CTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR GCA 90 bp | GAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGGTGGGAGGCTGGCTTCTaGCTCCAGGTCATTTACCAC | + |
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Preference number: 4 (lower is better) Translates to: ESVWRKPRLGALTRKKARWEAGF*LQVIYH Trigger: GTGGTAAATGACCTGGAGGCAGAAGCCAGCCTCCCA...CCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CCA 90 bp | GAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGGCACGCACGGATTTGGTGTaGTCCCAGGCATGTCGTATG | + |
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Preference number: 4 (lower is better) Translates to: ECLEETETRSTDEEEGKARTDLV*SQACRM Trigger: CATACGACATGCCTGGGACCACACCAAATCCGTGCG...TGCCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CCA 90 bp | GGCCTCCCGGAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGCCGTGTCTACCTCCATaGCCTTTACCTTCTTCTTAC | + |
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Preference number: 4 (lower is better) Translates to: GLPESVWRKPRLGALTRKPCLPP*PLPSSY Trigger: GTAAGAAGAAGGTAAAGGCCATGGAGGTAGACACGG...CTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR TCA 90 bp | GAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGGCAACCGCACATAGTCGATaGGGTCCCGAGACAAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: ECLEETETRSTDEEEGKATAHSR*GPETRY Trigger: ATACCTTGTCTCGGGACCTCATCGACTATGTGCGGT...TGCCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR GCA 90 bp | TCAGGCCACTGCTTGCAAGAGTCCTGCCAACAGAAGATGGCCATGCCATGGAAATGGGAGGCTGGCTTCTaGCTCCAGGTCATTTACCAC | + |
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Preference number: 4 (lower is better) Translates to: SGHCLQESCQQKMAMPWKWEAGF*LQVIYH Trigger: GTGGTAAATGACCTGGAGGCAGAAGCCAGCCTCCCA...TTTCCATGGCATGGCCATCTTCTGTTGGCAGGACTCTTGCAAGCAGTGGCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR CCA 90 bp | CAGAGTAGGTATCACATTCTCAGGCCACTGCTTGCAAGAGTCCTGCCAACAGAATCTGCCGCACGGATTTaGTGTGGTCCCAGGCATGTC | + |
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Preference number: 4 (lower is better) Translates to: QSRYHILRPLLARVLPTESAARI*CGPRHV Trigger: GACATGCCTGGGACCACACCAAATCCGTGCGGCAGA...TTCTGTTGGCAGGACTCTTGCAAGCAGTGGCCTGAGAATGTGATACCTACTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR GCA 90 bp | TCTTATTCCGGATCTGTTTTGGGGTGTCTTGGTAGTAATTCTTCTCATCCCGGGCTCAATCCGTGGCGCTaGCTTCCGACGAGCATTCCG | + |
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Preference number: 4 (lower is better) Translates to: SYSGSVLGCLGSNSSHPGLNPWR*LPTSIP Trigger: CGGAATGCTCGTCGGAAGGCAGCGCCACGGATTGAG...CCCGGGATGAGAAGAATTACTACCAAGACACCCCAAAACAGATCCGGAATAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| CDS-3UTR CCA 90 bp | AAAAAGCAATCCACAGTGAGCAGAGACCTGGCTCCTTACCCTTCTATGTCAGCCTCTTCTCTGGGAGGCTaGCTTCTGCCTCCAGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: KKQSTVSRDLAPYPSMSASSLGG*LLPPGH Trigger: ATGACCTGGAGGCAGAAGCCAGCCTCCCAGAGAAGA...GGCTGACATAGAAGGGTAAGGAGCCAGGTCTCTGCTCACTGTGGATTGCTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR CCA 90 bp | TTCAAGACCAACCTGGTCTACAGAGAGAGTTCTAGGACAGCTAAGGCTATTAGAGGAACACTCAATCCGTaGCGCTGCCTTCCGACGAGC | + |
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Preference number: 4 (lower is better) Translates to: FKTNLVYRESSRTAKAIRGTLNP*RCLPTS Trigger: GCTCGTCGGAAGGCAGCGCCACGGATTGAGTGTTCC...TCTAATAGCCTTAGCTGTCCTAGAACTCTCTCTGTAGACCAGGTTGGTCTTGAA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR CCA 90 bp | GGGTCCCTGATGTTTGATTTAAGCCATGGCCAACAAAAAGCAATCCACAGTGAGCGCACGGATTTGGTGTaGTCCCAGGCATGTCGTATG | + |
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Preference number: 4 (lower is better) Translates to: GSLMFDLSHGQQKAIHSERTDLV*SQACRM Trigger: CATACGACATGCCTGGGACCACACCAAATCCGTGCG...CTCACTGTGGATTGCTTTTTGTTGGCCATGGCTTAAATCAAACATCAGGGACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR TCA 90 bp | CAGAGTAGGTATCACATTCTCAGGCCACTGCTTGCAAGAGTCCTGCCAACAGAATCAGACGCTTTCGGTTaGCGTTGTAACCGAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: QSRYHILRPLLARVLPTESDAFG*RCNRTS Trigger: AGAAGTTCGGTTACAACGTCAACCGAAAGCGTCTGA...TTCTGTTGGCAGGACTCTTGCAAGCAGTGGCCTGAGAATGTGATACCTACTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR TCA 90 bp | CATCAAAGAGAGAGAGAGAAATCGAGATTCTGTCACCTCACCTTAGATCCCAGCTCAGACGCTTTCGGTTaGCGTTGTAACCGAACTTCT | + |
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Preference number: 4 (lower is better) Translates to: HQREREKSRFCHLTLDPSSDAFG*RCNRTS Trigger: AGAAGTTCGGTTACAACGTCAACCGAAAGCGTCTGA...GCTGGGATCTAAGGTGAGGTGACAGAATCTCGATTTCTCTCTCTCTCTTTGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| CDS-3UTR GCA 90 bp | ATTCCTTTATCATGTACAGAACAAGCTGAAACAGAGCATCCCTCTGAAAAGAAACTCAATCCGTGGCGCTaGCTTCCGACGAGCATTCCG | + |
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Preference number: 4 (lower is better) Translates to: IPLSCTEQAETEHPSEKKLNPWR*LPTSIP Trigger: CGGAATGCTCGTCGGAAGGCAGCGCCACGGATTGAG...TTTCTTTTCAGAGGGATGCTCTGTTTCAGCTTGTTCTGTACATGATAAAGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR CCA 90 bp | CCACCTAGTCATGTTACATGGGTAAAATATTCCTTTATCATGTACAGAACAAGCCCTTGTTGGGGTCCATaGCCAACCCCATCTCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: PPSHVTWVKYSFIMYRTSPCWGP*PTPSPP Trigger: TGGCGGAGATGGGGTTGGCCATGGACCCCAACAAGG...GCTTGTTCTGTACATGATAAAGGAATATTTTACCCATGTAACATGACTAGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| 3UTR CAA 72 bp | GACATTGATCTTATTCCGGATCTGTTTTGGGGTGTCTaGGTAGTAATTCTTCTCATCCCGGGCCATGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: DIDLIPDLFWGV*VVILLIPGHGL Trigger: AAGGCCATGGCCCGGGATGAGAAGAATTACTACCAAGACACCCCAAAACAGATCCGGAATAAGATCAATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000149462.2 |
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| CDS-3UTR CCA 90 bp | TTCAAGACCAACCTGGTCTACAGAGAGAGTTCTAGGACAGCTAAGGCTATTAGACCGTGTCTACCTCCATaGCCTTTACCTTCTTCTTAC | + |
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Preference number: 4 (lower is better) Translates to: FKTNLVYRESSRTAKAIRPCLPP*PLPSSY Trigger: GTAAGAAGAAGGTAAAGGCCATGGAGGTAGACACGG...TCTAATAGCCTTAGCTGTCCTAGAACTCTCTCTGTAGACCAGGTTGGTCTTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR TCA 90 bp | CCACCTAGTCATGTTACATGGGTAAAATATTCCTTTATCATGTACAGAACAAGCACCGCACATAGTCGATaGGGTCCCGAGACAAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: PPSHVTWVKYSFIMYRTSTAHSR*GPETRY Trigger: ATACCTTGTCTCGGGACCTCATCGACTATGTGCGGT...GCTTGTTCTGTACATGATAAAGGAATATTTTACCCATGTAACATGACTAGGTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR CAA 90 bp | GGCCTCCCGGAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGCGGAGGGGAACCGCCTaGTTGGGGTCCATGGCCAAC | + |
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Preference number: 5 (lower is better) Translates to: GLPESVWRKPRLGALTRKRRGTA*LGSMAN Trigger: GTTGGCCATGGACCCCAACAAGGCGGTTCCCCTCCG...CTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS CCA 90 bp | ATGGCCAACCCCATCTCCGCCAGGTTCTGCCGCACGGATTTGGTGTaGTCCCAGGCATGTCGTATGTGGGAACACTCAATCCGTGGCGCT | + |
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Preference number: 5 (lower is better) Translates to: MANPISARFCRTDLV*SQACRMWEHSIRGA Trigger: AGCGCCACGGATTGAGTGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCTGGCGGAGATGGGGTTGGCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CAA 90 bp | GAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGGCATTCTGCCGCACGGATTaGGTGTGGTCCCAGGCATGT | + |
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Preference number: 5 (lower is better) Translates to: ECLEETETRSTDEEEGKAFCRTD*VWSQAC Trigger: ACATGCCTGGGACCACACCAAATCCGTGCGGCAGAA...TGCCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CAA 90 bp | CAGAGTAGGTATCACATTCTCAGGCCACTGCTTGCAAGAGTCCTGCCAACAGAATTCTGCCGCACGGATTaGGTGTGGTCCCAGGCATGT | + |
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Preference number: 5 (lower is better) Translates to: QSRYHILRPLLARVLPTEFCRTD*VWSQAC Trigger: ACATGCCTGGGACCACACCAAATCCGTGCGGCAGAA...TTCTGTTGGCAGGACTCTTGCAAGCAGTGGCCTGAGAATGTGATACCTACTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR CAA 90 bp | GGCCTCCCGGAGAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGCTGTTTTGGGGTGTCTaGGTAGTAATTCTTCTCATC | + |
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Preference number: 5 (lower is better) Translates to: GLPESVWRKPRLGALTRKLFWGV*VVILLI Trigger: GATGAGAAGAATTACTACCAAGACACCCCAAAACAG...CTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTCTCCGGGAGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CAA 90 bp | GAGTGTCTGGAGGAAACCGAGACTAGGAGCACTGACGAGGAAGAAGGCAAGGCAAGGCTTGCCACTCCGTaGGGTAAAAGCGCTTATAGA | + |
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Preference number: 5 (lower is better) Translates to: ECLEETETRSTDEEEGKARLATP*GKSAYR Trigger: TCTATAAGCGCTTTTACCCAACGGAGTGGCAAGCCT...TGCCTTGCCTTCTTCCTCGTCAGTGCTCCTAGTCTCGGTTTCCTCCAGACACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS-3UTR CAA 90 bp | TCAGGCCACTGCTTGCAAGAGTCCTGCCAACAGAAGATGGCCATGCCATGGAAACTGTTTTGGGGTGTCTaGGTAGTAATTCTTCTCATC | + |
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Preference number: 5 (lower is better) Translates to: SGHCLQESCQQKMAMPWKLFWGV*VVILLI Trigger: GATGAGAAGAATTACTACCAAGACACCCCAAAACAG...TTTCCATGGCATGGCCATCTTCTGTTGGCAGGACTCTTGCAAGCAGTGGCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS-3UTR CAA 90 bp | AAGTTTGGGTCCCTGATGTTTGATTTAAGCCATGGCCAACAAAAAGCAATCCACAGGCTTGCCACTCCGTaGGGTAAAAGCGCTTATAGA | + |
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Preference number: 5 (lower is better) Translates to: KFGSLMFDLSHGQQKAIHRLATP*GKSAYR Trigger: TCTATAAGCGCTTTTACCCAACGGAGTGGCAAGCCT...GTGGATTGCTTTTTGTTGGCCATGGCTTAAATCAAACATCAGGGACCCAAACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026987.12 |
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| CDS CAA 72 bp | GCCAACCCCATCTCCGCCAGGTTCTGCCGCACGGATTaGGTGTGGTCCCAGGCATGTCGTATGTGGGAACAC | + |
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Preference number: 6 (lower is better) Translates to: ANPISARFCRTD*VWSQACRMWEH Trigger: GTGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCTGGCGGAGATGGGGTTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS CCA 72 bp | GTCCCAGGCATGTCGTATGTGGGAACACTCAATCCGTaGCGCTGCCTTCCGACGAGCATTCCGGTTCAGACG | + |
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Preference number: 6 (lower is better) Translates to: VPGMSYVGTLNP*RCLPTSIPVQT Trigger: CGTCTGAACCGGAATGCTCGTCGGAAGGCAGCGCCACGGATTGAGTGTTCCCACATACGACATGCCTGGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS CCA 72 bp | CCAACCCCATCTCCGCCAGGTTCTGCCGCACGGATTTaGTGTGGTCCCAGGCATGTCGTATGTGGGAACACT | + |
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Preference number: 6 (lower is better) Translates to: PTPSPPGSAARI*CGPRHVVCGNT Trigger: AGTGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCTGGCGGAGATGGGGTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS GCA 72 bp | GGCATGTCGTATGTGGGAACACTCAATCCGTGGCGCTaGCTTCCGACGAGCATTCCGGTTCAGACGCTTTCG | + |
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Preference number: 6 (lower is better) Translates to: GMSYVGTLNPWR*LPTSIPVQTLS Trigger: CGAAAGCGTCTGAACCGGAATGCTCGTCGGAAGGCAGCGCCACGGATTGAGTGTTCCCACATACGACATGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS CCA 72 bp | CCCATCTCCGCCAGGTTCTGCCGCACGGATTTGGTGTaGTCCCAGGCATGTCGTATGTGGGAACACTCAATC | + |
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Preference number: 6 (lower is better) Translates to: PISARFCRTDLV*SQACRMWEHSI Trigger: GATTGAGTGTTCCCACATACGACATGCCTGGGACCACACCAAATCCGTGCGGCAGAACCTGGCGGAGATGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 |
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| CDS TCA 72 bp | CCTTCCGACGAGCATTCCGGTTCAGACGCTTTCGGTTaGCGTTGTAACCGAACTTCTGCCTCCGAGTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: PSDEHSGSDAFG*RCNRTSASESF Trigger: GAAAGACTCGGAGGCAGAAGTTCGGTTACAACGTCAACCGAAAGCGTCTGAACCGGAATGCTCGTCGGAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026987.12 ENSMUST00000148222.2 ENSMUST00000149462.2 |
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| CDS CAA 90 bp | CCTGGGACAACTCCAGAGCTTAGTCTGCAGAGAATCGATGAAGGCTaGCCACTCCGTTGGGTAAAAGCGCTTATAGACATTGATCTTATT | + |
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Preference number: 6 (lower is better) Translates to: PGTTPELSLQRIDEG*PLRWVKALIDIDLI Trigger: AATAAGATCAATGTCTATAAGCGCTTTTACCCAACGGAGTGGCAAGCCTTCATCGATTCTCTGCAGACTAAGCTCTGGAGTTGTCCCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148222.2 |
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| CDS CAA 72 bp | ACTCCAGAGCTTAGTCTGCAGAGAATCGATGAAGGCTaGCCACTCCGTTGGGTAAAAGCGCTTATAGACATT | + |
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Preference number: 6 (lower is better) Translates to: TPELSLQRIDEG*PLRWVKALIDI Trigger: AATGTCTATAAGCGCTTTTACCCAACGGAGTGGCAAGCCTTCATCGATTCTCTGCAGACTAAGCTCTGGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148222.2 |
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