Pregenerated sensors for NOP10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027133Ensembl transcript IDs: ENSMUST00000028553.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | GGACTGGAGAGAGGGGTGCTTCCCAGAGGACCTGTGTCTATCCCCTaGAGTCACAGAAAGACTAGCTATCAGTCTCTAGTCACCAGGGAT | + |
Preference number: 1 (lower is better) Translates to: GLERGVLPRGPVSIP*SHRKTSYQSLVTRD Trigger: ATCCCTGGTGACTAGAGACTGATAGCTAGTCTTTCTGTGACTGCAGGGGATAGACACAGGTCCTCTGGGAAGCACCCCTCTCTCCAGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR TCA 90 bp | CCCCCAACACCCTATCGTCGATGGCACACAGTTCTATTGCTACAATaGGGGCTTACGAATGTTCTCAAGTGGCCTTGTACTACCAACGGT | + |
Preference number: 1 (lower is better) Translates to: PPTPYRRWHTVLLLQ*GLTNVLKWPCTTNG Trigger: ACCGTTGGTAGTACAAGGCCACTTGAGAACATTCGTAAGCCCTCATTGTAGCAATAGAACTGTGTGCCATCGACGATAGGGTGTTGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR CCA 90 bp | TATAGACTCATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATaGGAAGGCTTCAAGGCTTACAGATTGACGCGTTTGGTTGCTGAT | + |
Preference number: 1 (lower is better) Translates to: YRLIHVVSEIGFQTA*EGFKAYRLTRLVAD Trigger: ATCAGCAACCAAACGCGTCAATCTGTAAGCCTTGAAGCCTTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAATGAGTCTATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR-3UTR GCA 90 bp | GCAGAGGCAGTTAGACCTGAGGTCCAGGGCAGCCAGCTCTACATAGAGACTCTGCCTGTGTCTATCCCCTaGAGTCACAGAAAGACTAGC | + |
Preference number: 2 (lower is better) Translates to: AEAVRPEVQGSQLYIETLPVSIP*SHRKTS Trigger: GCTAGTCTTTCTGTGACTGCAGGGGATAGACACAGG...CAGAGTCTCTATGTAGAGCTGGCTGCCCTGGACCTCAGGTCTAACTGCCTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR CAA 90 bp | AGTTCTATTGCTACAATGAGGGCTTACGAATGTTCTCAAGTGGCCTaGTACTACCAACGGTACTACCCTTCCCCCATCTCTTCCTCCAAC | + |
Preference number: 2 (lower is better) Translates to: SSIATMRAYECSQVA*YYQRYYPSPISSSN Trigger: GTTGGAGGAAGAGATGGGGGAAGGGTAGTACCGTTGGTAGTACAAGGCCACTTGAGAACATTCGTAAGCCCTCATTGTAGCAATAGAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR-3UTR TCA 90 bp | GGGCATACTTGTTATCTCAGAACTCAAAATGTAGTGGTAGGACTGGAGAGAGGGTCCCTCTTCTGGTCTTaGTGGTTACTGGCACATATA | + |
Preference number: 2 (lower is better) Translates to: GHTCYLRTQNVVVGLERGSLFWS*WLLAHI Trigger: TATATGTGCCAGTAACCATCAAGACCAGAAGAGGGA...CCCTCTCTCCAGTCCTACCACTACATTTTGAGTTCTGAGATAACAAGTATGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR-3UTR CAA 90 bp | GCAGAGGCAGTTAGACCTGAGGTCCAGGGCAGCCAGCTCTACATAGAGACTCTGCTCCCTCTTCTGGTCTaGATGGTTACTGGCACATAT | + |
Preference number: 3 (lower is better) Translates to: AEAVRPEVQGSQLYIETLLPLLV*MVTGTY Trigger: ATATGTGCCAGTAACCATCAAGACCAGAAGAGGGAG...CAGAGTCTCTATGTAGAGCTGGCTGCCCTGGACCTCAGGTCTAACTGCCTCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR GCA 72 bp | AGAGGGGTGCTTCCCAGAGGACCTGTGTCTATCCCCTaGAGTCACAGAAAGACTAGCTATCAGTCTCTAGTC | + |
Preference number: 3 (lower is better) Translates to: RGVLPRGPVSIP*SHRKTSYQSLV Trigger: GACTAGAGACTGATAGCTAGTCTTTCTGTGACTGCAGGGGATAGACACAGGTCCTCTGGGAAGCACCCCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR TCA 72 bp | CCCTATCGTCGATGGCACACAGTTCTATTGCTACAATaGGGGCTTACGAATGTTCTCAAGTGGCCTTGTACT | + |
Preference number: 3 (lower is better) Translates to: PYRRWHTVLLLQ*GLTNVLKWPCT Trigger: AGTACAAGGCCACTTGAGAACATTCGTAAGCCCTCATTGTAGCAATAGAACTGTGTGCCATCGACGATAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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3UTR CCA 72 bp | ATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATaGGAAGGCTTCAAGGCTTACAGATTGACGCGTTTG | + |
Preference number: 3 (lower is better) Translates to: IHVVSEIGFQTA*EGFKAYRLTRL Trigger: CAAACGCGTCAATCTGTAAGCCTTGAAGCCTTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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CDS-3UTR CCA 90 bp | CAGTATAGACTCATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATGGGAAGAGAACCGAGCAGGATaGGCGGAGCAAGTCTGTTGT | + |
Preference number: 4 (lower is better) Translates to: QYRLIHVVSEIGFQTAWEENRAG*AEQVCC Trigger: ACAACAGACTTGCTCCGCCCATCCTGCTCGGTTCTC...TTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAATGAGTCTATACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |
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CDS-3UTR TCA 90 bp | CTCATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATGGGAAGGCTTCAAGGATCGCCCTGCTCGTTaGGGTAATATTGGAGAAACA | + |
Preference number: 4 (lower is better) Translates to: LIHVVSEIGFQTAWEGFKDRPAR*GNIGET Trigger: TGTTTCTCCAATATTACCTCAACGAGCAGGGCGATC...CTTGAAGCCTTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAATGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028553.4 |