RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NOP10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027133

Ensembl transcript IDs: ENSMUST00000028553.4

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGACTGGAGAGAGGGGTGCTTCCCAGAGGACCTGTGTCTATCCCCTaGAGTCACAGAAAGACTAGCTATCAGTCTCTAGTCACCAGGGAT +
Preference number: 1 (lower is better)
Translates to: GLERGVLPRGPVSIP*SHRKTSYQSLVTRD
Trigger: ATCCCTGGTGACTAGAGACTGATAGCTAGTCTTTCTGTGACTGCAGGGGATAGACACAGGTCCTCTGGGAAGCACCCCTCTCTCCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR TCA 90 bp CCCCCAACACCCTATCGTCGATGGCACACAGTTCTATTGCTACAATaGGGGCTTACGAATGTTCTCAAGTGGCCTTGTACTACCAACGGT +
Preference number: 1 (lower is better)
Translates to: PPTPYRRWHTVLLLQ*GLTNVLKWPCTTNG
Trigger: ACCGTTGGTAGTACAAGGCCACTTGAGAACATTCGTAAGCCCTCATTGTAGCAATAGAACTGTGTGCCATCGACGATAGGGTGTTGGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR CCA 90 bp TATAGACTCATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATaGGAAGGCTTCAAGGCTTACAGATTGACGCGTTTGGTTGCTGAT +
Preference number: 1 (lower is better)
Translates to: YRLIHVVSEIGFQTA*EGFKAYRLTRLVAD
Trigger: ATCAGCAACCAAACGCGTCAATCTGTAAGCCTTGAAGCCTTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAATGAGTCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR-3UTR GCA 90 bp GCAGAGGCAGTTAGACCTGAGGTCCAGGGCAGCCAGCTCTACATAGAGACTCTGCCTGTGTCTATCCCCTaGAGTCACAGAAAGACTAGC +
Preference number: 2 (lower is better)
Translates to: AEAVRPEVQGSQLYIETLPVSIP*SHRKTS
Trigger: GCTAGTCTTTCTGTGACTGCAGGGGATAGACACAGG...CAGAGTCTCTATGTAGAGCTGGCTGCCCTGGACCTCAGGTCTAACTGCCTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR CAA 90 bp AGTTCTATTGCTACAATGAGGGCTTACGAATGTTCTCAAGTGGCCTaGTACTACCAACGGTACTACCCTTCCCCCATCTCTTCCTCCAAC +
Preference number: 2 (lower is better)
Translates to: SSIATMRAYECSQVA*YYQRYYPSPISSSN
Trigger: GTTGGAGGAAGAGATGGGGGAAGGGTAGTACCGTTGGTAGTACAAGGCCACTTGAGAACATTCGTAAGCCCTCATTGTAGCAATAGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR-3UTR TCA 90 bp GGGCATACTTGTTATCTCAGAACTCAAAATGTAGTGGTAGGACTGGAGAGAGGGTCCCTCTTCTGGTCTTaGTGGTTACTGGCACATATA +
Preference number: 2 (lower is better)
Translates to: GHTCYLRTQNVVVGLERGSLFWS*WLLAHI
Trigger: TATATGTGCCAGTAACCATCAAGACCAGAAGAGGGA...CCCTCTCTCCAGTCCTACCACTACATTTTGAGTTCTGAGATAACAAGTATGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR-3UTR CAA 90 bp GCAGAGGCAGTTAGACCTGAGGTCCAGGGCAGCCAGCTCTACATAGAGACTCTGCTCCCTCTTCTGGTCTaGATGGTTACTGGCACATAT +
Preference number: 3 (lower is better)
Translates to: AEAVRPEVQGSQLYIETLLPLLV*MVTGTY
Trigger: ATATGTGCCAGTAACCATCAAGACCAGAAGAGGGAG...CAGAGTCTCTATGTAGAGCTGGCTGCCCTGGACCTCAGGTCTAACTGCCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR GCA 72 bp AGAGGGGTGCTTCCCAGAGGACCTGTGTCTATCCCCTaGAGTCACAGAAAGACTAGCTATCAGTCTCTAGTC +
Preference number: 3 (lower is better)
Translates to: RGVLPRGPVSIP*SHRKTSYQSLV
Trigger: GACTAGAGACTGATAGCTAGTCTTTCTGTGACTGCAGGGGATAGACACAGGTCCTCTGGGAAGCACCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR TCA 72 bp CCCTATCGTCGATGGCACACAGTTCTATTGCTACAATaGGGGCTTACGAATGTTCTCAAGTGGCCTTGTACT +
Preference number: 3 (lower is better)
Translates to: PYRRWHTVLLLQ*GLTNVLKWPCT
Trigger: AGTACAAGGCCACTTGAGAACATTCGTAAGCCCTCATTGTAGCAATAGAACTGTGTGCCATCGACGATAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
3UTR CCA 72 bp ATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATaGGAAGGCTTCAAGGCTTACAGATTGACGCGTTTG +
Preference number: 3 (lower is better)
Translates to: IHVVSEIGFQTA*EGFKAYRLTRL
Trigger: CAAACGCGTCAATCTGTAAGCCTTGAAGCCTTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
CDS-3UTR CCA 90 bp CAGTATAGACTCATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATGGGAAGAGAACCGAGCAGGATaGGCGGAGCAAGTCTGTTGT +
Preference number: 4 (lower is better)
Translates to: QYRLIHVVSEIGFQTAWEENRAG*AEQVCC
Trigger: ACAACAGACTTGCTCCGCCCATCCTGCTCGGTTCTC...TTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAATGAGTCTATACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4
CDS-3UTR TCA 90 bp CTCATTCACGTGGTGAGTGAGATAGGATTCCAAACAGCATGGGAAGGCTTCAAGGATCGCCCTGCTCGTTaGGGTAATATTGGAGAAACA +
Preference number: 4 (lower is better)
Translates to: LIHVVSEIGFQTAWEGFKDRPAR*GNIGET
Trigger: TGTTTCTCCAATATTACCTCAACGAGCAGGGCGATC...CTTGAAGCCTTCCCATGCTGTTTGGAATCCTATCTCACTCACCACGTGAATGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000028553.4