Pregenerated sensors for NOMO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030835Ensembl transcript IDs: ENSMUST00000033121.7
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGACACCAACACAAGGGTGACAGGGCCCAGGGCCTGCCTGAAGTaGGTGAGCATGTGCCTTTGTCCCCAGGCAGGCGGCAGCCCTGGC | + |
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Preference number: 1 (lower is better) Translates to: QDTNTRVTGPRACLK*VSMCLCPQAGGSPG Trigger: GCCAGGGCTGCCGCCTGCCTGGGGACAAAGGCACATGCTCACTCACTTCAGGCAGGCCCTGGGCCCTGTCACCCTTGTGTTGGTGTCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR GCA 90 bp | CTGGGAGGGACAGATGTTGCTGCAGCTTCTGGCACGGGCCTCGAGTaGAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAA | + |
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Preference number: 1 (lower is better) Translates to: LGGTDVAAASGTGLE*RGRFGESPEGTADQ Trigger: TTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAGGCCCGTGCCAGAAGCTGCAGCAACATCTGTCCCTCCCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR GCA 90 bp | TTCATCCAGCTGTTGACAGACCCTTCTGGGAGGGACAGATGTTGCTaGAGCTTCTGGCACGGGCCTCGAGTGCAGGGGGCGGTTTGGGGA | + |
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Preference number: 1 (lower is better) Translates to: FIQLLTDPSGRDRCC*SFWHGPRVQGAVWG Trigger: TCCCCAAACCGCCCCCTGCACTCGAGGCCCGTGCCAGAAGCTGCAGCAACATCTGTCCCTCCCAGAAGGGTCTGTCAACAGCTGGATGAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR GCA 90 bp | TCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTCTTCTTaGAAACGAATGTGGAAGATTAGATTATGTTCTCACGCCACCAGC | + |
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Preference number: 1 (lower is better) Translates to: SRRHSRPTPCFLDSS*KRMWKIRLCSHATS Trigger: GCTGGTGGCGTGAGAACATAATCTAATCTTCCACATTCGTTTGCAAGAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR CCA 90 bp | TTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTaGACTCTTCTTGCAAACGAATGTGGAAGATTAGATTATGTTCTC | + |
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Preference number: 1 (lower is better) Translates to: FGESPEGTADQRHVS*TLLANECGRLDYVL Trigger: GAGAACATAATCTAATCTTCCACATTCGTTTGCAAGAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR-3UTR GCA 90 bp | GCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTCCTGGCTGTGTCATCTaGAGGAGACGGGGCCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: APQGYTGEDRQAGHQHKGPGCVI*RRRGLL Trigger: AAGGAGGCCCCGTCTCCTGCAGATGACACAGCCAGG...ACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR-3UTR TCA 90 bp | GCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTAGGGCCTGCCTGAAGTaGGTGAGCATGTGCCTTTGT | + |
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Preference number: 2 (lower is better) Translates to: APQGYTGEDRQAGHQHKGRACLK*VSMCLC Trigger: ACAAAGGCACATGCTCACTCACTTCAGGCAGGCCCT...ACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR CCA 72 bp | GAGCATGTGCCTTTGTCCCCAGGCAGGCGGCAGCCCTaGCTGTGTCATCTGCAGGAGACGGGGCCTCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: EHVPLSPGRRQP*LCHLQETGPPS Trigger: AGAAGGAGGCCCCGTCTCCTGCAGATGACACAGCCAGGGCTGCCGCCTGCCTGGGGACAAAGGCACATGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR-3UTR CAA 90 bp | GGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACAGGGCCCAGGGCCTGAGTGAGCATGTGCCTTaGTCCCCAGGCAGGCGGCAG | + |
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Preference number: 3 (lower is better) Translates to: GEDRQAGHQHKGDRAQGLSEHVP*SPGRRQ Trigger: CTGCCGCCTGCCTGGGGACAAAGGCACATGCTCACT...CAGGCCCTGGGCCCTGTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR GCA 72 bp | CTGTTGACAGACCCTTCTGGGAGGGACAGATGTTGCTaGAGCTTCTGGCACGGGCCTCGAGTGCAGGGGGCG | + |
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Preference number: 3 (lower is better) Translates to: LLTDPSGRDRCC*SFWHGPRVQGA Trigger: CGCCCCCTGCACTCGAGGCCCGTGCCAGAAGCTGCAGCAACATCTGTCCCTCCCAGAAGGGTCTGTCAACAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR CCA 72 bp | AGCTTCTGGCACGGGCCTCGAGTGCAGGGGGCGGTTTaGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCA | + |
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Preference number: 3 (lower is better) Translates to: SFWHGPRVQGAV*GKSRRHSRPTP Trigger: TGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAGGCCCGTGCCAGAAGCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR GCA 72 bp | ACAGATGTTGCTGCAGCTTCTGGCACGGGCCTCGAGTaGAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACA | + |
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Preference number: 3 (lower is better) Translates to: TDVAAASGTGLE*RGRFGESPEGT Trigger: TGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAGGCCCGTGCCAGAAGCTGCAGCAACATCTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | GGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACAGGGCCCAGGGCCTGCTGTCAGAGGCCGCCTaGCCAAGGGCTCTGACTCCC | + |
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Preference number: 4 (lower is better) Translates to: GEDRQAGHQHKGDRAQGLLSEAA*PRALTP Trigger: GGGAGTCAGAGCCCTTGGCCAGGCGGCCTCTGACAG...CAGGCCCTGGGCCCTGTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR CAA 72 bp | CAGCTTCTGGCACGGGCCTCGAGTGCAGGGGGCGGTTaGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCC | + |
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Preference number: 4 (lower is better) Translates to: QLLARASSAGGG*GKVQKAQQTNA Trigger: GGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAGGCCCGTGCCAGAAGCTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | AGGCAGGCGGCAGCCCTGGCTGTGTCATCTGCAGGAGACGGGGCCTCCTTCTTCTCTGGTTGTTCAGGGTaGCCACAGCCTCTGGGACGC | + |
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Preference number: 4 (lower is better) Translates to: RQAAALAVSSAGDGASFFSGCSG*PQPLGR Trigger: GCGTCCCAGAGGCTGTGGTCACCCTGAACAACCAGA...GAAGAAGGAGGCCCCGTCTCCTGCAGATGACACAGCCAGGGCTGCCGCCTGCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | GGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGATCATCCACCATCTCCTaGCCAGGAGGCCGGGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: GGLGKVQKAQQTNAMFPGSSTIS*PGGRAL Trigger: CAGGGCCCGGCCTCCTGGGCAGGAGATGGTGGATGA...TCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | GCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGCTGCACGTGGTACATaGACCCTGGCAGCAGCCCAC | + |
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Preference number: 4 (lower is better) Translates to: APQGYTGEDRQAGHQHKGAARGT*TLAAAH Trigger: GTGGGCTGCTGCCAGGGTGCATGTACCACGTGCAGC...ACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | GCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTCTCTCATCTGGGGGCTaGAACCCGGACACTGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: APQGYTGEDRQAGHQHKGLSSGG*NPDTGD Trigger: GTCCCCAGTGTCCGGGTTCCAGCCCCCAGATGAGAG...ACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | AGGGCCCAGGGCCTGCCTGAAGTGAGTGAGCATGTGCCTTTGTCCCCAGGCAGGATCTCGGAGCAGCGGTaGGAAGTGGAAGAAGAGCGA | + |
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Preference number: 4 (lower is better) Translates to: RAQGLPEVSEHVPLSPGRISEQR*EVEEER Trigger: TCGCTCTTCTTCCACTTCCCACCGCTGCTCCGAGAT...CCTGCCTGGGGACAAAGGCACATGCTCACTCACTTCAGGCAGGCCCTGGGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | AGGCAGGCGGCAGCCCTGGCTGTGTCATCTGCAGGAGACGGGGCCTCCTTCTTCTCCAGGGCTCAGGTTTaGGAAAGTCAGAATGCCGTT | + |
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Preference number: 4 (lower is better) Translates to: RQAAALAVSSAGDGASFFSRAQV*ESQNAV Trigger: AACGGCATTCTGACTTTCTCAAACCTGAGCCCTGGA...GAAGAAGGAGGCCCCGTCTCCTGCAGATGACACAGCCAGGGCTGCCGCCTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | TGCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGACGCACCGTGGTACTTaGCTCCTTCAGCGCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: CTTGLHRRGQTGRTPTQGTHRGT*LLQRPG Trigger: ACCTGGGCGCTGAAGGAGGCAAGTACCACGGTGCGT...CCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | GCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGCGAGTCTCGATCTCTaGCAGCTGCTGTTCCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: APQGYTGEDRQAGHQHKGASLDL*QLLFPP Trigger: CGGAGGGAACAGCAGCTGGCAGAGATCGAGACTCGC...ACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | GGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACAGGGCCCAGGGCCTGTCCACCGCGACACCCTaGTCTGGCTCTCCATTTAAA | + |
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Preference number: 4 (lower is better) Translates to: GEDRQAGHQHKGDRAQGLSTATP*SGSPFK Trigger: TTTAAATGGAGAGCCAGAGCAGGGTGTCGCGGTGGA...CAGGCCCTGGGCCCTGTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | GCCTCGAGTGCAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACACTTTGCCTGAGAGCTaGAGGCTGCGTTTCTCACCC | + |
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Preference number: 4 (lower is better) Translates to: ASSAGGGLGKVQKAQQTNTLPES*RLRFSP Trigger: GGGTGAGAAACGCAGCCTCCAGCTCTCAGGCAAAGT...GTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | CTCGAGTGCAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCGATGAAATTCCAGAGTaGTGGCGTGTGAGAGTGCGC | + |
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Preference number: 4 (lower is better) Translates to: LECRGRFGESPEGTADQRDEIPE*WRVRVR Trigger: GCGCACTCTCACACGCCATCACTCTGGAATTTCATC...GCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | AGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCCTTCAACATCAGCCCTaGTCTGGTCTCAGCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: RGRFGESPEGTADQRHVSLQHQP*SGLSLG Trigger: CCCGAGGCTGAGACCAGAGCAGGGCTGATGTTGAAG...GGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | AGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCACTTCACCCCTTTCATaGGCTCCCCGTCACTGCGGA | + |
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Preference number: 4 (lower is better) Translates to: RGRFGESPEGTADQRHVSTSPLS*APRHCG Trigger: TCCGCAGTGACGGGGAGCCCATGAAAGGGGTGAAGT...GGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | AGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCCCCAGAGACACCGTCTaGATGGGGTTGTCGAGACTC | + |
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Preference number: 4 (lower is better) Translates to: RGRFGESPEGTADQRHVSPRDTV*MGLSRL Trigger: GAGTCTCGACAACCCCATCCAGACGGTGTCTCTGGG...GGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | GCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGGAGTTGACTTTGCCTaGGAGCTGGAGGCTGCGTTT | + |
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Preference number: 4 (lower is better) Translates to: APQGYTGEDRQAGHQHKGGVDFA*ELEAAF Trigger: AAACGCAGCCTCCAGCTCTCAGGCAAAGTCAACTCC...ACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | TTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTCTTCCCTGGCCAAGGGCTCTaGCTCCCTGAAGACGACTCG | + |
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Preference number: 4 (lower is better) Translates to: LGKVQKAQQTNAMFPGLFPGQGL*LPEDDS Trigger: CGAGTCGTCTTCAGGGAGTCAGAGCCCTTGGCCAGG...GAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | TTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTCTTCCTTCTCAGGGATACCTaGACTCCTGCTGGGCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LGKVQKAQQTNAMFPGLFLLRDT*TPAGPR Trigger: CCTGGGCCCAGCAGGAGTTCAGGTATCCCTGAGAAG...GAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | AGGCAGGCGGCAGCCCTGGCTGTGTCATCTGCAGGAGACGGGGCCTCCTTCTTCACCAGTCCTCATGCATaGTGCTTATTTTGTATCTCC | + |
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Preference number: 4 (lower is better) Translates to: RQAAALAVSSAGDGASFFTSPHA*CLFCIS Trigger: GGAGATACAAAATAAGCATCATGCATGAGGACTGGT...GAAGAAGGAGGCCCCGTCTCCTGCAGATGACACAGCCAGGGCTGCCGCCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | GGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGAACCCCAGGGAGCGGCTaGTCGTCTTCAGCTTTAATC | + |
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Preference number: 4 (lower is better) Translates to: GGLGKVQKAQQTNAMFPGTPGSG*SSSALI Trigger: GATTAAAGCTGAAGACGACCAGCCGCTCCCTGGGGT...TCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | GGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACAGGGCCCAGGGCCTGGTTCGATCTTCAGGATaGAATCCCCCTTATCATACA | + |
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Preference number: 4 (lower is better) Translates to: GEDRQAGHQHKGDRAQGLVRSSG*NPPYHT Trigger: TGTATGATAAGGGGGATTTCATCCTGAAGATCGAAC...CAGGCCCTGGGCCCTGTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | CTCGAGTGCAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCTGCTTTAAAGCAAAATaGTCCATGGGCATCGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LECRGRFGESPEGTADQRCFKAK*SMGIAV Trigger: GACAGCGATGCCCATGGATCATTTTGCTTTAAAGCA...GCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | TGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTCTTCTTGTAACCGGTCTGCCTaGACTCCACCGCAGACACGT | + |
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Preference number: 4 (lower is better) Translates to: WGKSRRHSRPTPCFLDSSCNRSA*TPPQTR Trigger: ACGTGTCTGCGGTGGAGTTCAGGCAGACCGGTTACA...AGAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | CCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACCTTCGCCCTCTTCTTTaGCATTCTTCTCCCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: PQGYTGEDRQAGHQHKGDLRPLL*HSSPSP Trigger: AGGAGAGGGAGAAGAATGGCAAAGAAGAGGGCGAAG...GTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | CCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACTGTCTTCTCCATAGATaGTGCAGTCTTTCTGCCCCA | + |
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Preference number: 4 (lower is better) Translates to: PQGYTGEDRQAGHQHKGDCLLHR*CSLSAP Trigger: TGGGGCAGAAAGACTGCAGCATCTATGGAGAAGACA...GTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | CGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTTGCGTGACTGTAGACTaGATCTTCGAGTCAGCACCG | + |
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Preference number: 4 (lower is better) Translates to: RFGESPEGTADQRHVSWTCVTVD*IFESAP Trigger: CGGTGCTGACTCGAAGATCCAGTCTACAGTCACGCA...AGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | AGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCCCACTCAGGTCAAACTaGTTGATCTGCCGGAAAACT | + |
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Preference number: 4 (lower is better) Translates to: RGRFGESPEGTADQRHVSPLRSN*LICRKT Trigger: AGTTTTCCGGCAGATCAACCAGTTTGACCTGAGTGG...GGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | TGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTCTTCTTCTCTTCATGTCTTCTaGGCCGCTGCTGTCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: WGKSRRHSRPTPCFLDSSSLHVF*AAAVRG Trigger: GCCTCTGACAGCAGCGGCCCAGAAGACATGAAGAGA...AGAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR TCA 90 bp | CCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACCTCCAGGAAGAACTTTaGAAAACGCAAACTTTCCGC | + |
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Preference number: 4 (lower is better) Translates to: PQGYTGEDRQAGHQHKGDLQEEL*KTQTFR Trigger: GCGGAAAGTTTGCGTTTTTCAAAGTTCTTCCTGGAG...GTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR GCA 90 bp | TGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTCTTCTCTGTATTTACTCATCTaGTTGATGGTGTCGGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: WGKSRRHSRPTPCFLDSSLYLLI*LMVSGE Trigger: CTCCCCCGACACCATCAAGCAGATGAGTAAATACAG...AGAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CCA 90 bp | AGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGTCTTCTGTTTCTTaGTTTGTCTCTTCATGTCTT | + |
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Preference number: 4 (lower is better) Translates to: RGRFGESPEGTADQRHVSWSSVS*FVSSCL Trigger: AAGACATGAAGAGACAAACCAAGAAACAGAAGACCA...GGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| 3UTR CAA 72 bp | AACACAAACGAGTGGCTGACTTTATTCATCCAGCTGTaGACAGACCCTTCTGGGAGGGACAGATGTTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NTNEWLTLFIQL*TDPSGRDRCCC Trigger: GCAGCAACATCTGTCCCTCCCAGAAGGGTCTGTCAACAGCTGGATGAATAAAGTCAGCCACTCGTTTGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | AGGCAGGCGGCAGCCCTGGCTGTGTCATCTGCAGGAGACGGGGCCTCCTTCTTCGTCCAGGGCTCAGGTTaGAGAAAGTCAGAATGCCGT | + |
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Preference number: 5 (lower is better) Translates to: RQAAALAVSSAGDGASFFVQGSG*RKSECR Trigger: ACGGCATTCTGACTTTCTCAAACCTGAGCCCTGGAC...GAAGAAGGAGGCCCCGTCTCCTGCAGATGACACAGCCAGGGCTGCCGCCTGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | CTCGAGTGCAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCTCCATCACAGGCCTGTaGGTCACAGTGAGGGGGAAT | + |
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Preference number: 5 (lower is better) Translates to: LECRGRFGESPEGTADQRSITGL*VTVRGN Trigger: ATTCCCCCTCACTGTGACCAACAGGCCTGTGATGGA...GCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS GCA 90 bp | GTTGGTCACAGTGAGGGGGAATACCTGCGGCTTCAACATCAGCCCTaGTCTGGTCTCAGCCTCGGGTACCACCACCTGGACTTTGTAGGC | + |
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Preference number: 5 (lower is better) Translates to: VGHSEGEYLRLQHQP*SGLSLGYHHLDFVG Trigger: GCCTACAAAGTCCAGGTGGTGGTACCCGAGGCTGAGACCAGAGCAGGGCTGATGTTGAAGCCGCAGGTATTCCCCCTCACTGTGACCAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | CTCGAGTGCAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCTCTTCGCCCTCTTCTTaGCCATTCTTCTCCCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: LECRGRFGESPEGTADQRSSPSS*PFFSLS Trigger: GGAGAGGGAGAAGAATGGCAAAGAAGAGGGCGAAGA...GCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | GGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACAGGGCCCAGGGCCTGTTGACTTTAATCTGGTaGTTCAGGGTGACCACAGCC | + |
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Preference number: 5 (lower is better) Translates to: GEDRQAGHQHKGDRAQGLLTLIW*FRVTTA Trigger: GGCTGTGGTCACCCTGAACAACCAGATTAAAGTCAA...CAGGCCCTGGGCCCTGTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | TGCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGAGCAAAGCCTTGTCCTaGTCTTGGGAGGACAGGACC | + |
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Preference number: 5 (lower is better) Translates to: CTTGLHRRGQTGRTPTQGSKALS*SWEDRT Trigger: GGTCCTGTCCTCCCAAGACAAGGACAAGGCTTTGCT...CCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | TGCACCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGCCTTTGCTGAGGACCTaGCCATTCACAGAGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: CTTGLHRRGQTGRTPTQGPLLRT*PFTEKP Trigger: TGGCTTCTCTGTGAATGGCAAGGTCCTCAGCAAAGG...CCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGGTGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | CCACAGGGCTACACAGGAGAGGACAGACAGGCAGGACACCAACACAAGGGTGACTATTTACTCATCTGCTaGATGGTGTCGGGGGAGCGG | + |
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Preference number: 5 (lower is better) Translates to: PQGYTGEDRQAGHQHKGDYLLIC*MVSGER Trigger: CCGCTCCCCCGACACCATCAAGCAGATGAGTAAATA...GTCACCCTTGTGTTGGTGTCCTGCCTGTCTGTCCTCTCCTGTGTAGCCCTGTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | AGGCAGGCGGCAGCCCTGGCTGTGTCATCTGCAGGAGACGGGGCCTCCTTCTTCGTGACGTCCATCATTTaGTCAGTAATGATTGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: RQAAALAVSSAGDGASFFVTSII*SVMIVP Trigger: TGGAACAATCATTACTGACAAAATGATGGACGTCAC...GAAGAAGGAGGCCCCGTCTCCTGCAGATGACACAGCCAGGGCTGCCGCCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | GCCTCGAGTGCAGGGGGCGGTTTGGGGAAAGTCCAGAAGGCACAGCAGACCAACTGCATGATGCTTATTTaGTATCTCCCAGGCAGAACT | + |
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Preference number: 5 (lower is better) Translates to: ASSAGGGLGKVQKAQQTNCMMLI*YLPGRT Trigger: AGTTCTGCCTGGGAGATACAAAATAAGCATCATGCA...GTTGGTCTGCTGTGCCTTCTGGACTTTCCCCAAACCGCCCCCTGCACTCGAGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS-3UTR CAA 90 bp | TGGGGAAAGTCCAGAAGGCACAGCAGACCAACGCCATGTTTCCTGGACTCTTCTCCGTCAGCCTTCGTTTaGACTTTAATCTGGTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: WGKSRRHSRPTPCFLDSSPSAFV*TLIWLF Trigger: GAACAACCAGATTAAAGTCAAAACGAAGGCTGACGG...AGAAGAGTCCAGGAAACATGGCGTTGGTCTGCTGTGCCTTCTGGACTTTCCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS CCA 72 bp | TCTCGGAGCAGCGGTGGGAAGTGGAAGAAGAGCGACTaGCCCAGAGACACCGTCTGGATGGGGTTGTCGAGA | + |
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Preference number: 6 (lower is better) Translates to: SRSSGGKWKKSD*PRDTVWMGLSR Trigger: TCTCGACAACCCCATCCAGACGGTGTCTCTGGGCCAGTCGCTCTTCTTCCACTTCCCACCGCTGCTCCGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS CAA 72 bp | CAGATGTCGCTCACACCATCCACTCGCAGCTCCACGTaGGTTGGCTCAAAACTCCAGCCCAGAGGAGGTTCG | + |
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Preference number: 6 (lower is better) Translates to: QMSLTPSTRSST*VGSKLQPRGGS Trigger: CGAACCTCCTCTGGGCTGGAGTTTTGAGCCAACCAACGTGGAGCTGCGAGTGGATGGTGTGAGCGACATCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS TCA 72 bp | GGGAGGACAGGACCACTCTGTATTTACTCATCTGCTTaGTGGTGTCGGGGGAGCGGACGATGGCGATCTGAC | + |
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Preference number: 6 (lower is better) Translates to: GRTGPLCIYSSA*WCRGSGRWRSD Trigger: GTCAGATCGCCATCGTCCGCTCCCCCGACACCATCAAGCAGATGAGTAAATACAGAGTGGTCCTGTCCTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS CCA 72 bp | GTCGCTCACACCATCCACTCGCAGCTCCACGTTGGTTaGCTCAAAACTCCAGCCCAGAGGAGGTTCGATCTT | + |
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Preference number: 6 (lower is better) Translates to: VAHTIHSQLHVG*LKTPAQRRFDL Trigger: AAGATCGAACCTCCTCTGGGCTGGAGTTTTGAGCCAACCAACGTGGAGCTGCGAGTGGATGGTGTGAGCGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS CCA 72 bp | AGATGTCGCTCACACCATCCACTCGCAGCTCCACGTTaGTTGGCTCAAAACTCCAGCCCAGAGGAGGTTCGA | + |
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Preference number: 6 (lower is better) Translates to: RCRSHHPLAAPR*LAQNSSPEEVR Trigger: TCGAACCTCCTCTGGGCTGGAGTTTTGAGCCAACCAACGTGGAGCTGCGAGTGGATGGTGTGAGCGACATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS CAA 72 bp | TGTCGCTCACACCATCCACTCGCAGCTCCACGTTGGTaGGCTCAAAACTCCAGCCCAGAGGAGGTTCGATCT | + |
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Preference number: 6 (lower is better) Translates to: CRSHHPLAAPRW*AQNSSPEEVRS Trigger: AGATCGAACCTCCTCTGGGCTGGAGTTTTGAGCCAACCAACGTGGAGCTGCGAGTGGATGGTGTGAGCGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS GCA 72 bp | TCTTGGGAGGACAGGACCACTCTGTATTTACTCATCTaGTTGATGGTGTCGGGGGAGCGGACGATGGCGATC | + |
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Preference number: 6 (lower is better) Translates to: SWEDRTTLYLLI*LMVSGERTMAI Trigger: GATCGCCATCGTCCGCTCCCCCGACACCATCAAGCAGATGAGTAAATACAGAGTGGTCCTGTCCTCCCAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS CAA 72 bp | ATGTTCTCCAGGCGGAAGGAGCCGTCAGCCTTCGTTTaGACTTTAATCTGGTTGTTCAGGGTGACCACAGCC | + |
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Preference number: 6 (lower is better) Translates to: MFSRRKEPSAFV*TLIWLFRVTTA Trigger: GGCTGTGGTCACCCTGAACAACCAGATTAAAGTCAAAACGAAGGCTGACGGCTCCTTCCGCCTGGAGAACAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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| CDS CAA 72 bp | TGGGCATCGCTGTCCACAGTGAGCAAAGCCTTGTCCTaGTCTTGGGAGGACAGGACCACTCTGTATTTACTC | + |
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Preference number: 6 (lower is better) Translates to: WASLSTVSKALS*SWEDRTTLYLL Trigger: GAGTAAATACAGAGTGGTCCTGTCCTCCCAAGACAAGGACAAGGCTTTGCTCACTGTGGACAGCGATGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033121.7 |
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