RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NOL4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041923

Ensembl transcript IDs: ENSMUST00000069215.13, ENSMUST00000081423.13, ENSMUST00000092015.11, ENSMUST00000097651.10, ENSMUST00000164186.8, ENSMUST00000164893.8, ENSMUST00000165323.2

Found 385 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCGGCGACAAGCTGTCTCACGGCATTGATTTCCGTCGGACTGAGCTaGGGTCTGGAGGTTGAGCTGCTGGACGATCCCGAGCCAGTTGCC +
Preference number: 1 (lower is better)
Translates to: PATSCLTALISVGLS*GLEVELLDDPEPVA
Trigger: GGCAACTGGCTCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAGCTCAGTCCGACGGAAATCAATGCCGTGAGACAGCTTGTCGCCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR TCA 90 bp TCTCACGGCATTGATTTCCGTCGGACTGAGCTGAGGTCTGGAGGTTaGGCTGCTGGACGATCCCGAGCCAGTTGCCAGCTGCCTCTTCAT +
Preference number: 1 (lower is better)
Translates to: SHGIDFRRTELRSGG*AAGRSRASCQLPLH
Trigger: ATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAGCTCAGTCCGACGGAAATCAATGCCGTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR GCA 90 bp TCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTaGTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCACG +
Preference number: 1 (lower is better)
Translates to: SVTFSHLHPVAALEG*LVAQPGASSSEEST
Trigger: CGTGCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR GCA 90 bp GTCACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTaGTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTC +
Preference number: 1 (lower is better)
Translates to: VTCNLSNIQSSTPSR*SGGLLGSTTRGEQL
Trigger: GAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR TCA 90 bp TGGGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTaGAGTTCCTTAACACACCAGGGTATGGAGCAAGGACAGCCTGGC +
Preference number: 1 (lower is better)
Translates to: WAHLSISSTSRSEFL*SSLTHQGMEQGQPG
Trigger: GCCAGGCTGTCCTTGCTCCATACCCTGGTGTGTTAAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR TCA 90 bp GGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTaGGACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAG +
Preference number: 1 (lower is better)
Translates to: GMKTSVVSCRVAWVF*DWKWRHLLEVVPDE
Trigger: CTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTCTCAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR CCA 90 bp GCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTaGGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTG +
Preference number: 1 (lower is better)
Translates to: AYDIYADTLKHKATG*AHLSISSTSRSEFL
Trigger: CAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR CAA 90 bp GTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTaGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCACGCGC +
Preference number: 2 (lower is better)
Translates to: VTFSHLHPVAALEGC*VAQPGASSSEESTR
Trigger: GCGCGTGCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR TCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCAAGGACAGCCTGGCATaGTGGAAATGCTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: ALEGCLVAQPGASSSEESKDSLA*WKCFPQ
Trigger: TTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTT...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR TCA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCAGGTCAGAGTTCCTGTaGAGTTCCTTAACACACCAG +
Preference number: 2 (lower is better)
Translates to: GRAWETGGESSLLRSSSIRSEFL*SSLTHQ
Trigger: CTGGTGTGTTAAGGAACTTCACAGGAACTCTGACCT...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR GCA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCTCCCTCAAAAGGTTGTaGAGCAAGCCTAGGAGTATC +
Preference number: 2 (lower is better)
Translates to: GRAWETGGESSLLRSSSISLKRL*SKPRSI
Trigger: GATACTCCTAGGCTTGCTGCACAACCTTTTGAGGGA...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR TCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGAAGGACAGCCTGGCATaGTGGAAATGCTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLKDSLA*WKCFPQ
Trigger: TTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTT...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTCCCTCAAAAGGTTGTaGAGCAAGCCTAGGAGTATC +
Preference number: 2 (lower is better)
Translates to: YGARTAWHDGNASLKRLCSLKRL*SKPRSI
Trigger: GATACTCCTAGGCTTGCTGCACAACCTTTTGAGGGA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR GCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGTCCCTCAAAAGGTTGTaGAGCAAGCCTAGGAGTATC +
Preference number: 2 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLSLKRL*SKPRSI
Trigger: GATACTCCTAGGCTTGCTGCACAACCTTTTGAGGGA...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CCA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCCATAACAGCCTTTCCTaGAAACTATTTCCAAAAGAA +
Preference number: 2 (lower is better)
Translates to: GRAWETGGESSLLRSSSIHNSLS*KLFPKE
Trigger: TTCTTTTGGAAATAGTTTCCAGGAAAGGCTGTTATG...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTAAGGACAGCCTGGCATaGTGGAAATGCTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLKDSLA*WKCFPQ
Trigger: TTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR TCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGACTGAGGTCTGGAGGTTaGGCTGCTGGACGATCCCGA +
Preference number: 2 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRLRSGG*AAGRSR
Trigger: TCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAG...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR-3UTR GCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATTCCCTCAAAAGGTTGTaGAGCAAGCCTAGGAGTATC +
Preference number: 2 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNSLKRL*SKPRSI
Trigger: GATACTCCTAGGCTTGCTGCACAACCTTTTGAGGGA...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAAGGACAGCCTGGCATaGTGGAAATGCTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: SAYDIYADTLKHKATGWAKDSLA*WKCFPQ
Trigger: TTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAGGTCAGAGTTCCTGTaGAGTTCCTTAACACACCAG +
Preference number: 2 (lower is better)
Translates to: SAYDIYADTLKHKATGWARSEFL*SSLTHQ
Trigger: CTGGTGTGTTAAGGAACTTCACAGGAACTCTGACCT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATCCCTCAAAAGGTTGTaGAGCAAGCCTAGGAGTATC +
Preference number: 2 (lower is better)
Translates to: SAYDIYADTLKHKATGWASLKRL*SKPRSI
Trigger: GATACTCCTAGGCTTGCTGCACAACCTTTTGAGGGA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR CCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGCATAAAGCAACAGGCTaGGCACATTTGAGCATCTCA +
Preference number: 2 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIEHKATG*AHLSIS
Trigger: TGAGATGCTCAAATGTGCCCAGCCTGTTGCTTTATG...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR TCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAAAGGACAGCCTGGCATaGTGGAAATGCTTCCCTCAA +
Preference number: 2 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRKDSLA*WKCFPQ
Trigger: TTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTT...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR GCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGAAGTACAGACATCGTTTaGCTCAGTTCTGTTGTAAAA +
Preference number: 2 (lower is better)
Translates to: DWKWRHLLEVVPDELTYRSTDIV*LSSVVK
Trigger: TTTTACAACAGAACTGAGGCAAACGATGTCTGTACT...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR-3UTR CCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGACATAAAGCAACAGGCTaGGCACATTTGAGCATCTCA +
Preference number: 2 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRHKATG*AHLSIS
Trigger: TGAGATGCTCAAATGTGCCCAGCCTGTTGCTTTATG...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCGCTCTGGAGGGTTGCTaGGTAGCACAACCAGGGGCG +
Preference number: 3 (lower is better)
Translates to: GRAWETGGESSLLRSSSIALEGC*VAQPGA
Trigger: CGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCTGTGGCGTGGGTGTTTaGAGACTGGAAATGGAGGCA +
Preference number: 3 (lower is better)
Translates to: ALEGCLVAQPGASSSEESCGVGV*RLEMEA
Trigger: TGCCTCCATTTCCAGTCTCAAAACACCCACGCCACA...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR TCA 72 bp ATTGATTTCCGTCGGACTGAGCTGAGGTCTGGAGGTTaGGCTGCTGGACGATCCCGAGCCAGTTGCCAGCTG +
Preference number: 3 (lower is better)
Translates to: IDFRRTELRSGG*AAGRSRASCQL
Trigger: CAGCTGGCAACTGGCTCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAGCTCAGTCCGACGGAAATCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR TCA 72 bp AGCTGTCTCACGGCATTGATTTCCGTCGGACTGAGCTaGGGTCTGGAGGTTGAGCTGCTGGACGATCCCGAG +
Preference number: 3 (lower is better)
Translates to: SCLTALISVGLS*GLEVELLDDPE
Trigger: CTCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAGCTCAGTCCGACGGAAATCAATGCCGTGAGACAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR GCA 72 bp TTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTaGTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAG +
Preference number: 3 (lower is better)
Translates to: FSHLHPVAALEG*LVAQPGASSSE
Trigger: CTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCAAATGGAGGCATCTCTaGGAAGTAGTTCCTGATGAG +
Preference number: 3 (lower is better)
Translates to: ALEGCLVAQPGASSSEESKWRHL*EVVPDE
Trigger: CTCATCAGGAACTACTTCCAAGAGATGCCTCCATTT...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTACGATCCCGAGCCAGTaGCCAGCTGCCTCTTCATGC +
Preference number: 3 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLTIPSQ*PAASSC
Trigger: GCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGT...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR GCA 72 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTaGTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGC +
Preference number: 3 (lower is better)
Translates to: NLSNIQSSTPSR*SGGLLGSTTRG
Trigger: GCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGCTTCCCTCAAAAGGTaGTGCAGCAAGCCTAGGAGT +
Preference number: 3 (lower is better)
Translates to: YGARTAWHDGNASLKRLCASLKR*CSKPRS
Trigger: ACTCCTAGGCTTGCTGCACAACCTTTTGAGGGAAGC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR CAA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTGCTTCCCTCAAAAGGTaGTGCAGCAAGCCTAGGAGT +
Preference number: 3 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLASLKR*CSKPRS
Trigger: ACTCCTAGGCTTGCTGCACAACCTTTTGAGGGAAGC...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCGGGCTGGGTTTTGTTTaGTTTTCAACATGGTCTTTT +
Preference number: 3 (lower is better)
Translates to: GRAWETGGESSLLRSSSIGLGFV*FSTWSF
Trigger: AAAAGACCATGTTGAAAACAAAACAAAACCCAGCCC...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCGTGCAAAGTTTAAGATaGTCACTTGCAACCTCAGTA +
Preference number: 3 (lower is better)
Translates to: GRAWETGGESSLLRSSSIVQSLR*SLATSV
Trigger: TACTGAGGTTGCAAGTGACAATCTTAAACTTTGCAC...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR TCA 72 bp ACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTaGGACTGGAAATGGAGGCATCTCTTGGAAGTAGTT +
Preference number: 3 (lower is better)
Translates to: TSVVSCRVAWVF*DWKWRHLLEVV
Trigger: AACTACTTCCAAGAGATGCCTCCATTTCCAGTCTCAAAACACCCACGCCACACGGCAGCTTACCACAGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR CCA 72 bp TTCCTTAACACACCAGGGTATGGAGCAAGGACAGCCTaGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGC +
Preference number: 3 (lower is better)
Translates to: FLNTPGYGARTA*HDGNASLKRLC
Trigger: GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATACCCTGGTGTGTTAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCAGATCCTTTTCATTGTaGTCATATCCTGTAGCAACA +
Preference number: 3 (lower is better)
Translates to: GRAWETGGESSLLRSSSIRSFSL*SYPVAT
Trigger: TGTTGCTACAGGATATGACAACAATGAAAAGGATCT...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCACAAGATCCTTTTCATaGTTGTCATATCCTGTAGCA +
Preference number: 3 (lower is better)
Translates to: GRAWETGGESSLLRSSSITRSFS*LSYPVA
Trigger: TGCTACAGGATATGACAACAATGAAAAGGATCTTGT...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTGCTTCCCTCAAAAGGTaGTGCAGCAAGCCTAGGAGT +
Preference number: 3 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLASLKR*CSKPRS
Trigger: ACTCCTAGGCTTGCTGCACAACCTTTTGAGGGAAGC...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR CAA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGACAAGATCCTTTTCATaGTTGTCATATCCTGTAGCA +
Preference number: 3 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGTRSFS*LSYPVA
Trigger: TGCTACAGGATATGACAACAATGAAAAGGATCTTGT...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR-3UTR CAA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTATGTGGCGTGGGTGTTTaGAGACTGGAAATGGAGGCA +
Preference number: 3 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVCGVGV*RLEMEA
Trigger: TGCCTCCATTTCCAGTCTCAAAACACCCACGCCACA...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
3UTR-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGCTTCCCTCAAAAGGTaGTGCAGCAAGCCTAGGAGT +
Preference number: 3 (lower is better)
Translates to: SAYDIYADTLKHKATGWAASLKR*CSKPRS
Trigger: ACTCCTAGGCTTGCTGCACAACCTTTTGAGGGAAGC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
3UTR-3UTR CAA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTAAAATGGAGGCATCTCTaGGAAGTAGTTCCTGATGAG +
Preference number: 3 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVKWRHL*EVVPDE
Trigger: CTCATCAGGAACTACTTCCAAGAGATGCCTCCATTT...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
3UTR-3UTR CAA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTAGGGCTGGGTTTTGTTTaGTTTTCAACATGGTCTTTT +
Preference number: 3 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVGLGFV*FSTWSF
Trigger: AAAAGACCATGTTGAAAACAAAACAAAACCCAGCCC...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
3UTR-3UTR CAA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGGGGCTGGGTTTTGTTTaGTTTTCAACATGGTCTTTT +
Preference number: 3 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIEGLGFV*FSTWSF
Trigger: AAAAGACCATGTTGAAAACAAAACAAAACCCAGCCC...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR GCA 72 bp AATACATACAAGAGTGCAAAGTTTAAGATTGTCACTTaGAACCTCAGTAACATTCAGTCATCTACACCCAGT +
Preference number: 3 (lower is better)
Translates to: NTYKSAKFKIVT*NLSNIQSSTPS
Trigger: ACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGTGACAATCTTAAACTTTGCACTCTTGTATGTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
3UTR CCA 72 bp CAATGTCCACAGTTACAAGAAAAAGTGCACATTACCTaGTCACAATCACAGTCAGTACTTGAAAAACTAGAT +
Preference number: 3 (lower is better)
Translates to: QCPQLQEKVHIT*SQSQSVLEKLD
Trigger: ATCTAGTTTTTCAAGTACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACATTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR GCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCCTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESLRFSG*SSCSSP
Trigger: CGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAG...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCGTAGGTGGCCTGGGCTaGCTCCGGCTTGCACTGTTT +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESVGGLG*LRLALF
Trigger: AAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTAC...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCTGGAACAGTAGCTGTTaGGTAGGTGGCCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESWNSSC*VGGLGC
Trigger: GCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCA...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCGCACGAAGAGCACTTaGTTGGCGCCGCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSRTKST*LAPPPP
Trigger: GGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACGCACGAAGAGCACTTaGTTGGCGCCGCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLRTKST*LAPPPP
Trigger: GGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCGCGTGTTTCCGGATTTaGTCTCCATTCGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESACFRI*SPFGPV
Trigger: GACAGGGCCGAATGGAGAGCAAATCCGGAAACACGC...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCTCAGGCTGGCCCAGCTaGAAACCCTTCGATTTGACC +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESSGWPS*KPFDLT
Trigger: GGTCAAATCGAAGGGTTTCCAGCTGGGCCAGCCTGA...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
3UTR CAA 72 bp AGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTaGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAA +
Preference number: 4 (lower is better)
Translates to: SHLHPVAALEGC*VAQPGASSSEE
Trigger: TTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCACTCTCTGCAACTGCTaGAGTAAGGTGGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESTLCNC*SKVGGN
Trigger: ATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGT...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCAGGTCCCATTGCCATTaGTGTACAATACCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESRSHCH*CTIPPG
Trigger: CCCAGGAGGTATTGTACATCAATGGCAATGGGACCT...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSLRFSG*SSCSSP
Trigger: CGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCACCAGTCCTGGAACTaGCGGTACATGTCGCGCTCG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSHQSWN*RYMSRS
Trigger: CGAGCGCGACATGTACCGCCAGTTCCAGGACTGGTG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTGGAACAGTAGCTGTTaGGTAGGTGGCCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSWNSSC*VGGLGC
Trigger: GCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGGGCTGCCTCCGGCTTaGACTGTTTGTCAGCAGGAG +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLGLPPA*TVCQQE
Trigger: CTCCTGCTGACAAACAGTGCAAGCCGGAGGCAGCCC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCGATCCCGAGCCAGTTaGCAGCTGCCTCTTCATGCT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSRSRAS*QLPLHA
Trigger: AGCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTCTGAGGTCTGGAGGTTaGGCTGCTGGACGATCCCGA +
Preference number: 4 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLLRSGG*AAGRSR
Trigger: TCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAG...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCCTGAGGTCTGGAGGTTaGGCTGCTGGACGATCCCGA +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCLRSGG*AAGRSR
Trigger: TCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAG...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCCTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCLRFSG*SSCSSP
Trigger: CGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAG...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTCTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLLRFSG*SSCSSP
Trigger: CGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAG...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCGCTGGAGTAGCTGTGTaGTGGAGACTTGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: GRAWETGGESSLLRSSSIAGVAV*WRLASI
Trigger: AATGGAAGCAAGTCTCCAGCACACAGCTACTCCAGC...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGGGCTGCCTCCGGCTTaGACTGTTTGTCAGCAGGAG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCGLPPA*TVCQQE
Trigger: CTCCTGCTGACAAACAGTGCAAGCCGGAGGCAGCCC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp CGGAACGCAATAAAAATGCAGCCGATTCTCGATAACCGGCGACAAGCTGTCTCAGTAGGTGGCCTGGGCTaGCTCCGGCTTGCACTGTTT +
Preference number: 4 (lower is better)
Translates to: RNAIKMQPILDNRRQAVSVGGLG*LRLALF
Trigger: AAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTAC...TGAGACAGCTTGTCGCCGGTTATCGAGAATCGGCTGCATTTTTATTGCGTTCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGTAGGTGGCCTGGGCTaGCTCCGGCTTGCACTGTTT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCVGGLG*LRLALF
Trigger: AAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTAC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCGCACGAAGAGCACTTaGTTGGCGCCGCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLRTKST*LAPPPP
Trigger: GGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGCGTGTTTCCGGATTTaGTCTCCATTCGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSACFRI*SPFGPV
Trigger: GACAGGGCCGAATGGAGAGCAAATCCGGAAACACGC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCTAAGGCACCAGTCCTaGAACTGGCGGTACATGTCG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSLRHQS*NWRYMS
Trigger: CGACATGTACCGCCAGTTCCAGGACTGGTGCCTTAG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCATCTATCCTGAACTCTaGAGTGAGCTGTGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: GRAWETGGESSLLRSSSIIYPEL*SELCRA
Trigger: AGCTCTGCACAGCTCACTTCAGAGTTCAGGATAGAT...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAATCTCCCCTGTTGAGTaGCAGATCCTCTGCACCTCG +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLISPVE*QILCTS
Trigger: CGAGGTGCAGAGGATCTGTCACTCAACAGGGGAGAT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCTTCATCTCCCCTGTTaGGTGACAGATCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSLHLPC*VTDPLH
Trigger: GTGCAGAGGATCTGTCACTCAACAGGGGAGATGAAG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGGAAGCAGCTGAGCTGTaGCCCAGAGTCTCATTGCCA +
Preference number: 4 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGEAAEL*PRVSLP
Trigger: TGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTC...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGAAGCAGCTGAGCTGTaGCCCAGAGTCTCATTGCCA +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLEAAEL*PRVSLP
Trigger: TGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCCAACACTCTCATTTTTaGCAGAGTCATAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: ALEGCLVAQPGASSSEESQHSHF*QSHSWS
Trigger: ACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTG...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACTAAGGCACCAGTCCTaGAACTGGCGGTACATGTCG +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLLRHQS*NWRYMS
Trigger: CGACATGTACCGCCAGTTCCAGGACTGGTGCCTTAG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTCATCTTGCTGGCCATaGACAGTCTGGGGACTTTGC +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSSSCWP*TVWGLC
Trigger: GCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCATCTCCCCTGTTGAGTaGCAGATCCTCTGCACCTCG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCISPVE*QILCTS
Trigger: CGAGGTGCAGAGGATCTGTCACTCAACAGGGGAGAT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACTTCATCTCCCCTGTTaGGTGACAGATCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLLHLPC*VTDPLH
Trigger: GTGCAGAGGATCTGTCACTCAACAGGGGAGATGAAG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAGGTCCCATTGCCATTaGTGTACAATACCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSRSHCH*CTIPPG
Trigger: CCCAGGAGGTATTGTACATCAATGGCAATGGGACCT...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCCGTCTTGGTCTTGCCTaGGTCCCCGTAAGTCCTAAG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCRLGLA*VPVSPK
Trigger: CTTAGGACTTACGGGGACTCAGGCAAGACCAAGACG...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGCTGGAGTAGCTGTGTaGTGGAGACTTGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSAGVAV*WRLASI
Trigger: AATGGAAGCAAGTCTCCAGCACACAGCTACTCCAGC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATGCCAGAGTCATAGCTaGAGTAGCTGTGTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLCQSHS*SSCVLE
Trigger: CTCCAGCACACAGCTACTCCAGCTATGACTCTGGCA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTGCCAGAGTCATAGCTaGAGTAGCTGTGTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGCQSHS*SSCVLE
Trigger: CTCCAGCACACAGCTACTCCAGCTATGACTCTGGCA...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGCAGCAGAGTCATGGTaGATCCTGCTCTTCAACTTA +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSAAESW*ILLFNL
Trigger: TAAGTTGAAGAGCAGGATTCACCATGACTCTGCTGC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAACTCTCTGCAACTGCTaGAGTAAGGTGGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLTLCNC*SKVGGN
Trigger: ATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGCGTCTTGGTCTTGCCTaGGTCCCCGTAAGTCCTAAG +
Preference number: 4 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLRLGLA*VPVSPK
Trigger: CTTAGGACTTACGGGGACTCAGGCAAGACCAAGACG...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGACTCCTACGCCATCCTaGGAGAGTCCTCCAGATGGT +
Preference number: 4 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLTPTPS*ESPPDG
Trigger: ACCATCTGGAGGACTCTCTCAGGATGGCGTAGGAGT...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS-3UTR GCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGCTGGAGTAGCTGTGTaGTGGAGACTTGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLAGVAV*WRLASI
Trigger: AATGGAAGCAAGTCTCCAGCACACAGCTACTCCAGC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAGCAGCTTCATCCTGTaGTTTATCCAGACGCATCCT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSSSFIL*FIQTHP
Trigger: AGGATGCGTCTGGATAAAGCACAGGATGAAGCTGCT...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTGTAGGTGGCCTGGGCTaGCTCCGGCTTGCACTGTTT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLVGGLG*LRLALF
Trigger: AAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTAC...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGGAGTAGCTGTGTGCTaGAGACTTGCTTCCATTTTC +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSGVAVC*RLASIF
Trigger: GAAAATGGAAGCAAGTCTCCAGCACACAGCTACTCC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTGCCAGAGTCATAGCTaGAGTAGCTGTGTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCCQSHS*SSCVLE
Trigger: CTCCAGCACACAGCTACTCCAGCTATGACTCTGGCA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGGGCTGCTTAGAGATTaGGACCATTCGGTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLGLLRD*DHSVQV
Trigger: AACTTGGACCGAATGGTCCCAATCTCTAAGCAGCCC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCACCAGTCCTGGAACTaGCGGTACATGTCGCGCTCG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLHQSWN*RYMSRS
Trigger: CGAGCGCGACATGTACCGCCAGTTCCAGGACTGGTG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACGAAGAGCACTTGCTTaGCGCCGCCGCCTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWARRALA*RRRLPH
Trigger: GTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTGGCCATGGACAGTCTaGGGACTTTGCATTCTTTCT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSWPWTV*GLCILS
Trigger: AGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTCATCTTGCTGGCCATaGACAGTCTGGGGACTTTGC +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCSSCWP*TVWGLC
Trigger: GCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGAGAGAGTCCTCCAGATaGTGCTTGGAAGAGCCTTTC +
Preference number: 4 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGRESSR*CLEEPF
Trigger: GAAAGGCTCTTCCAAGCACCATCTGGAGGACTCTCT...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCCAGTTCTATCATTGCTaGTCCAGTATCCCTCAGGCG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCQFYHC*SSIPQA
Trigger: CGCCTGAGGGATACTGGATCAGCAATGATAGAACTG...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAATCTATCCTGAACTCTaGAGTGAGCTGTGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLIYPEL*SELCRA
Trigger: AGCTCTGCACAGCTCACTTCAGAGTTCAGGATAGAT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGAATTGTCGCCTGCATaGGTCAATGATAGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLELSPA*VNDSLD
Trigger: ATCCAGGCTATCATTGACTCATGCAGGCGACAATTC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTTTCTGGCACGCTCTTaGTACTCAGGGAATTGTCGC +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCFLARS*YSGNCR
Trigger: GCGACAATTCCCTGAGTATCAAGAGCGTGCCAGAAA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCACTCTCTGCAACTGCTaGAGTAAGGTGGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCTLCNC*SKVGGN
Trigger: ATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTGGAACAGTAGCTGTTaGGTAGGTGGCCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLWNSSC*VGGLGC
Trigger: GCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTCATGTACGCCATTGTaGTTGGCATGTTGTAGTCGA +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSSCTPL*LACCSR
Trigger: TCGACTACAACATGCCAATCACAATGGCGTACATGA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTAGTGGCTGCTCTTCCTaGTCCAGCCCGGTTTTGCCA +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLSGCSS*SSPVLP
Trigger: TGGCAAAACCGGGCTGGAGCAGGAAGAGCAGCCACT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATCTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNLRFSG*SSCSSP
Trigger: CGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAG...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTGTGTGCTGGAGACTTaGTTCCATTTTCTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSCVLET*FHFLSL
Trigger: AAGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTGCTGGAGTAGCTGTGTaGTGGAGACTTGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLAGVAV*WRLASI
Trigger: AATGGAAGCAAGTCTCCAGCACACAGCTACTCCAGC...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp ACTGCAAATTTAGAACCCAGTGAGTACAGACATCGTTTGCCTCAGTTCTGTTGTGGGCTGCCTCCGGCTTaGACTGTTTGTCAGCAGGAG +
Preference number: 4 (lower is better)
Translates to: TANLEPSEYRHRLPQFCCGLPPA*TVCQQE
Trigger: CTCCTGCTGACAAACAGTGCAAGCCGGAGGCAGCCC...ACAACAGAACTGAGGCAAACGATGTCTGTACTCACTGGGTTCTAAATTTGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCGATCCCGAGCCAGTTaGCAGCTGCCTCTTCATGCT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLRSRAS*QLPLHA
Trigger: AGCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGACGATCCCGAGCCAGTTaGCAGCTGCCTCTTCATGCT +
Preference number: 4 (lower is better)
Translates to: DWKWRHLLEVVPDELTYRRSRAS*QLPLHA
Trigger: AGCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCG...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAGCTGCAGTTTCATGTaGTTCATGTACGCCATTGTG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSSCSFM*FMYAIV
Trigger: CACAATGGCGTACATGAAGCACATGAAACTGCAGCT...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTTCCCATCACTGCCTTaGTCATCTATCCTGAACTCT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSFPSLP*SSILNS
Trigger: AGAGTTCAGGATAGATGACCAAGGCAGTGATGGGAA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGAGTCAATGATAGCCTaGATCTTTTCTTTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSESMIA*IFSLGC
Trigger: GCAGCCCAAAGAAAAGATCCAGGCTATCATTGACTC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTACGGATACGTTTTCTaGCACGCTCTTGATACTCAG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSYGYVF*HALDTQ
Trigger: CTGAGTATCAAGAGCGTGCCAGAAAACGTATCCGTA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAC +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCTAEVR*EGIGRD
Trigger: GTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATCACCAGTCCTGGAACTaGCGGTACATGTCGCGCTCG +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNHQSWN*RYMSRS
Trigger: CGAGCGCGACATGTACCGCCAGTTCCAGGACTGGTG...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTATCTATCCTGAACTCTaGAGTGAGCTGTGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLIYPEL*SELCRA
Trigger: AGCTCTGCACAGCTCACTTCAGAGTTCAGGATAGAT...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCTTCTCGTTCCATCTTaGGGTCAGAGATTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSLLVPS*GQRLED
Trigger: ATCTTCTAATCTCTGACCTCAAGATGGAACGAGAAG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTATCTCCCCTGTTGAGTaGCAGATCCTCTGCACCTCG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLISPVE*QILCTS
Trigger: CGAGGTGCAGAGGATCTGTCACTCAACAGGGGAGAT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGAATTGTCGCCTGCATaGGTCAATGATAGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCELSPA*VNDSLD
Trigger: ATCCAGGCTATCATTGACTCATGCAGGCGACAATTC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCGTCTTGGTCTTGCCTaGGTCCCCGTAAGTCCTAAG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLRLGLA*VPVSPK
Trigger: CTTAGGACTTACGGGGACTCAGGCAAGACCAAGACG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAATCCTCATCTTGCTGTaGGTTCAGAAGCTGCAGTTT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLILILL*VQKLQF
Trigger: AAACTGCAGCTTCTGAACTCACAGCAAGATGAGGAT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGAGAAGCAGCTGAGCTGTaGCCCAGAGTCTCATTGCCA +
Preference number: 4 (lower is better)
Translates to: DWKWRHLLEVVPDELTYREAAEL*PRVSLP
Trigger: TGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTC...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTGTGTGCTGGAGACTTaGTTCCATTTTCTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGCVLET*FHFLSL
Trigger: AAGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACA...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAGCTTCATCCTGTaGTTTATCCAGACGCATCCT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCSSFIL*FIQTHP
Trigger: AGGATGCGTCTGGATAAAGCACAGGATGAAGCTGCT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTACTGTAGGTGGCCTGGGCTaGCTCCGGCTTGCACTGTTT +
Preference number: 4 (lower is better)
Translates to: STVTRKSAHYLVTITVSTVGGLG*LRLALF
Trigger: AAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTAC...AGTACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTGCGTGTTTCCGGATTTaGTCTCCATTCGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLACFRI*SPFGPV
Trigger: GACAGGGCCGAATGGAGAGCAAATCCGGAAACACGC...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTGTGAGTTCAGAAGCTaGAGTTTCATGTGCTTCATG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSCEFRS*SFMCFM
Trigger: CATGAAGCACATGAAACTGCAGCTTCTGAACTCACA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTCCCATCACTGCCTTaGTCATCTATCCTGAACTCT +
Preference number: 4 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGFPSLP*SSILNS
Trigger: AGAGTTCAGGATAGATGACCAAGGCAGTGATGGGAA...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGAGTCAATGATAGCCTaGATCTTTTCTTTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLESMIA*IFSLGC
Trigger: GCAGCCCAAAGAAAAGATCCAGGCTATCATTGACTC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATACGGATACGTTTTCTaGCACGCTCTTGATACTCAG +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLYGYVF*HALDTQ
Trigger: CTGAGTATCAAGAGCGTGCCAGAAAACGTATCCGTA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCTAAGGCACCAGTCCTaGAACTGGCGGTACATGTCG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLLRHQS*NWRYMS
Trigger: CGACATGTACCGCCAGTTCCAGGACTGGTGCCTTAG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTCAGGCTGGCCCAGCTaGAAACCCTTCGATTTGACC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLSGWPS*KPFDLT
Trigger: GGTCAAATCGAAGGGTTTCCAGCTGGGCCAGCCTGA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGACGAAGAGCACTTGCTTaGCGCCGCCGCCTCCCCCAC +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRRRALA*RRRLPH
Trigger: GTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCG...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGTGCATTCTTTTCTaGCACTCGGAACAGCTCATT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSKCILF*HSEQLI
Trigger: AATGAGCTGTTCCGAGTGCCAGAAAAGAATGCACTT...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGTACGCCATTGTGATTaGCATGTTGTAGTCGATCAT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSVRHCD*HVVVDH
Trigger: ATGATCGACTACAACATGCCAATCACAATGGCGTAC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTTGGCCATGGACAGTCTaGGGACTTTGCATTCTTTCT +
Preference number: 4 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLWPWTV*GLCILS
Trigger: AGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCA...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
3UTR CAA 72 bp ACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTaGTGCAGCAAGCCTAGGAGTATCTCTGCTGGAAAA +
Preference number: 4 (lower is better)
Translates to: TAWHDGNASLKR*CSKPRSISAGK
Trigger: TTTTCCAGCAGAGATACTCCTAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGATCTATCCTGAACTCTaGAGTGAGCTGTGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLIYPEL*SELCRA
Trigger: AGCTCTGCACAGCTCACTTCAGAGTTCAGGATAGAT...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACTTCTCGTTCCATCTTaGGGTCAGAGATTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLLLVPS*GQRLED
Trigger: ATCTTCTAATCTCTGACCTCAAGATGGAACGAGAAG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGACTTCATCTCCCCTGTTaGGTGACAGATCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: DWKWRHLLEVVPDELTYRLHLPC*VTDPLH
Trigger: GTGCAGAGGATCTGTCACTCAACAGGGGAGATGAAG...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTCCGCCTGCAGGACTTaGGGTAAGTACGGATACGTT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLSACRT*GKYGYV
Trigger: AACGTATCCGTACTTACCTCAAGTCCTGCAGGCGGA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCTCGCTTTCACAGGCTaGAGCCAAGATACTCTCTGC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLLAFTG*SQDTLC
Trigger: GCAGAGAGTATCTTGGCTTCAGCCTGTGAAAGCGAG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACTGAGGTCTGGAGGTTaGGCTGCTGGACGATCCCGA +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWALRSGG*AAGRSR
Trigger: TCGGGATCGTCCAGCAGCTCAACCTCCAGACCTCAG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGAAGGCATAGCTCTCTaGAATTGCTTTGTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSEGIAL*NCFVSS
Trigger: AGAACTTACAAAGCAATTTCAGAGAGCTATGCCTTC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATTTCCATTATCTTTGTaGTCCGTTCCATCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLFPLSL*SVPSGF
Trigger: GAACCCAGATGGAACGGATCACAAAGATAATGGAAA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTCATGTACGCCATTGTaGTTGGCATGTTGTAGTCGA +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCSCTPL*LACCSR
Trigger: TCGACTACAACATGCCAATCACAATGGCGTACATGA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCATCCTCATCTTGCTGTaGGTTCAGAAGCTGCAGTTT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCILILL*VQKLQF
Trigger: AAACTGCAGCTTCTGAACTCACAGCAAGATGAGGAT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTTCGTCACTTTCTATTaGGCTTTCATCCTCATCTTG +
Preference number: 4 (lower is better)
Translates to: GARTAWHDGNASLKRLCSFVTFY*AFILIL
Trigger: CAAGATGAGGATGAAAGCTCAATAGAAAGTGACGAA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCG +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWALRFSG*SSCSSP
Trigger: CGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp CGGAACGCAATAAAAATGCAGCCGATTCTCGATAACCGGCGACAAGCTGTCTCATGTGTGCTGGAGACTTaGTTCCATTTTCTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: RNAIKMQPILDNRRQAVSCVLET*FHFLSL
Trigger: AAGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACA...TGAGACAGCTTGTCGCCGGTTATCGAGAATCGGCTGCATTTTTATTGCGTTCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACAACACTCTCATTTTTaGCAGAGTCATAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLQHSHF*QSHSWS
Trigger: ACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGGGCTGCCTCCGGCTTaGACTGTTTGTCAGCAGGAG +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAGLPPA*TVCQQE
Trigger: CTCCTGCTGACAAACAGTGCAAGCCGGAGGCAGCCC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGTAGGTGGCCTGGGCTaGCTCCGGCTTGCACTGTTT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAVGGLG*LRLALF
Trigger: AAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTAC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTGCAGTTTCATGTaGTTCATGTACGCCATTGTG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCSCSFM*FMYAIV
Trigger: CACAATGGCGTACATGAAGCACATGAAACTGCAGCT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAAAGTGCATTCTTTTCTaGCACTCGGAACAGCTCATT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLKCILF*HSEQLI
Trigger: AATGAGCTGTTCCGAGTGCCAGAAAAGAATGCACTT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGTGATCCGTTCCATCTaGGTTCAAGTGCATTCTTTT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLVIRSI*VQVHSF
Trigger: AAAAGAATGCACTTGAACCCAGATGGAACGGATCAC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGGTACGCCATTGTGATTaGCATGTTGTAGTCGATCAT +
Preference number: 4 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGVRHCD*HVVVDH
Trigger: ATGATCGACTACAACATGCCAATCACAATGGCGTAC...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCAGTTCTATCATTGCTaGTCCAGTATCCCTCAGGCG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLQFYHC*SSIPQA
Trigger: CGCCTGAGGGATACTGGATCAGCAATGATAGAACTG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGATCTCCCCTGTTGAGTaGCAGATCCTCTGCACCTCG +
Preference number: 4 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIEISPVE*QILCTS
Trigger: CGAGGTGCAGAGGATCTGTCACTCAACAGGGGAGAT...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTTTCTGGCACGCTCTTaGTACTCAGGGAATTGTCGC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLFLARS*YSGNCR
Trigger: GCGACAATTCCCTGAGTATCAAGAGCGTGCCAGAAA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATGGAACAGTAGCTGTTaGGTAGGTGGCCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAWNSSC*VGGLGC
Trigger: GCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTAGGTCCCATTGCCATTaGTGTACAATACCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLRSHCH*CTIPPG
Trigger: CCCAGGAGGTATTGTACATCAATGGCAATGGGACCT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAGAAGGCATAGCTCTCTaGAATTGCTTTGTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLEGIAL*NCFVSS
Trigger: AGAACTTACAAAGCAATTTCAGAGAGCTATGCCTTC...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTCGTCACTTTCTATTaGGCTTTCATCCTCATCTTG +
Preference number: 4 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGFVTFY*AFILIL
Trigger: CAAGATGAGGATGAAAGCTCAATAGAAAGTGACGAA...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCCAACACTCTCATTTTTaGCAGAGTCATAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCQHSHF*QSHSWS
Trigger: ACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTG...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATTCTCCGAATCCTCATaGTCATCATGTTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLFSESS*SSCSSS
Trigger: TGAAGATGAACATGATGAGCATGAGGATTCGGAGAA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAATCTTTTCTTTGGGCTaGTTAGAGATTGGGACCATT +
Preference number: 4 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLIFSLG*LEIGTI
Trigger: AATGGTCCCAATCTCTAAGCAGCCCAAAGAAAAGAT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR GCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGAGCTGCAGTTTCATGTaGTTCATGTACGCCATTGTG +
Preference number: 4 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLSCSFM*FMYAIV
Trigger: CACAATGGCGTACATGAAGCACATGAAACTGCAGCT...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTGTGAGTTCAGAAGCTaGAGTTTCATGTGCTTCATG +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCCEFRS*SFMCFM
Trigger: CATGAAGCACATGAAACTGCAGCTTCTGAACTCACA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGAACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAC +
Preference number: 4 (lower is better)
Translates to: DWKWRHLLEVVPDELTYRTAEVR*EGIGRD
Trigger: GTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGT...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS-3UTR CCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLTAEVR*EGIGRD
Trigger: GTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAAGTGCATTCTTTTCTaGCACTCGGAACAGCTCATT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCKCILF*HSEQLI
Trigger: AATGAGCTGTTCCGAGTGCCAGAAAAGAATGCACTT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTGTGATCCGTTCCATCTaGGTTCAAGTGCATTCTTTT +
Preference number: 4 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLVIRSI*VQVHSF
Trigger: AAAAGAATGCACTTGAACCCAGATGGAACGGATCAC...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGTGATCCGTTCCATCTaGGTTCAAGTGCATTCTTTT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCVIRSI*VQVHSF
Trigger: AAAAGAATGCACTTGAACCCAGATGGAACGGATCAC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGTACGCCATTGTGATTaGCATGTTGTAGTCGATCAT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCVRHCD*HVVVDH
Trigger: ATGATCGACTACAACATGCCAATCACAATGGCGTAC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTATCTATCCTGAACTCTaGAGTGAGCTGTGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLIYPEL*SELCRA
Trigger: AGCTCTGCACAGCTCACTTCAGAGTTCAGGATAGAT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGCTTCTCGTTCCATCTTaGGGTCAGAGATTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLLLVPS*GQRLED
Trigger: ATCTTCTAATCTCTGACCTCAAGATGGAACGAGAAG...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATTTTCTGGCACGCTCTTaGTACTCAGGGAATTGTCGC +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNFLARS*YSGNCR
Trigger: GCGACAATTCCCTGAGTATCAAGAGCGTGCCAGAAA...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS-3UTR TCA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTACTCGCTTTCACAGGCTaGAGCCAAGATACTCTCTGC +
Preference number: 4 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVLAFTG*SQDTLC
Trigger: GCAGAGAGTATCTTGGCTTCAGCCTGTGAAAGCGAG...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGAAGGCATAGCTCTCTaGAATTGCTTTGTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: YGARTAWHDGNASLKRLCEGIAL*NCFVSS
Trigger: AGAACTTACAAAGCAATTTCAGAGAGCTATGCCTTC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGAAGCAGCTGAGCTGTaGCCCAGAGTCTCATTGCCA +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAEAAEL*PRVSLP
Trigger: TGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATGCTGGAGTAGCTGTGTaGTGGAGACTTGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNAGVAV*WRLASI
Trigger: AATGGAAGCAAGTCTCCAGCACACAGCTACTCCAGC...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGCAACACTCTCATTTTTaGCAGAGTCATAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLQHSHF*QSHSWS
Trigger: ACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTG...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGAAGCAGCTTCATCCTGTaGTTTATCCAGACGCATCCT +
Preference number: 4 (lower is better)
Translates to: DWKWRHLLEVVPDELTYRSSFIL*FIQTHP
Trigger: AGGATGCGTCTGGATAAAGCACAGGATGAAGCTGCT...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTAGCAGCTTCATCCTGTaGTTTATCCAGACGCATCCT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLSSFIL*FIQTHP
Trigger: AGGATGCGTCTGGATAAAGCACAGGATGAAGCTGCT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAGGGCTGCCTCCGGCTTaGACTGTTTGTCAGCAGGAG +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRGLPPA*TVCQQE
Trigger: CTCCTGCTGACAAACAGTGCAAGCCGGAGGCAGCCC...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTGGAGTAGCTGTGTGCTaGAGACTTGCTTCCATTTTC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLGVAVC*RLASIF
Trigger: GAAAATGGAAGCAAGTCTCCAGCACACAGCTACTCC...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTACTTGCCAGAGTCATAGCTaGAGTAGCTGTGTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: STVTRKSAHYLVTITVSTCQSHS*SSCVLE
Trigger: CTCCAGCACACAGCTACTCCAGCTATGACTCTGGCA...AGTACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR CCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATCAGGCTGGCCCAGCTaGAAACCCTTCGATTTGACC +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWASGWPS*KPFDLT
Trigger: GGTCAAATCGAAGGGTTTCCAGCTGGGCCAGCCTGA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTAAACACCAGTGTCTGTaGCAGCCCAGTTCTATCATT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLKHQCL*QPSSII
Trigger: AATGATAGAACTGGGCTGTCACAGACACTGGTGTTT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGAAAACACCAGTGTCTGTaGCAGCCCAGTTCTATCATT +
Preference number: 4 (lower is better)
Translates to: DWKWRHLLEVVPDELTYRKHQCL*QPSSII
Trigger: AATGATAGAACTGGGCTGTCACAGACACTGGTGTTT...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACTTCATCTCCCCTGTTaGGTGACAGATCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWALHLPC*VTDPLH
Trigger: GTGCAGAGGATCTGTCACTCAACAGGGGAGATGAAG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATCCGCCTGCAGGACTTaGGGTAAGTACGGATACGTT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWASACRT*GKYGYV
Trigger: AACGTATCCGTACTTACCTCAAGTCCTGCAGGCGGA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR TCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGACTCTCTGCAACTGCTaGAGTAAGGTGGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIETLCNC*SKVGGN
Trigger: ATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGT...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACTCGCTTTCACAGGCTaGAGCCAAGATACTCTCTGC +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWALAFTG*SQDTLC
Trigger: GCAGAGAGTATCTTGGCTTCAGCCTGTGAAAGCGAG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTCATGTACGCCATTGTaGTTGGCATGTTGTAGTCGA +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLSCTPL*LACCSR
Trigger: TCGACTACAACATGCCAATCACAATGGCGTACATGA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTAGCTGCAGTTTCATGTaGTTCATGTACGCCATTGTG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLSCSFM*FMYAIV
Trigger: CACAATGGCGTACATGAAGCACATGAAACTGCAGCT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGGAGTCCTCCAGATGGTaGTTGGAAGAGCCTTTCATG +
Preference number: 4 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIEESSRW*LEEPFM
Trigger: CATGAAAGGCTCTTCCAAGCACCATCTGGAGGACTC...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS-3UTR CCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTTCCCATCACTGCCTTaGTCATCTATCCTGAACTCT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLFPSLP*SSILNS
Trigger: AGAGTTCAGGATAGATGACCAAGGCAGTGATGGGAA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATGCCAGAGTCATAGCTaGAGTAGCTGTGTGCTGGAG +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWACQSHS*SSCVLE
Trigger: CTCCAGCACACAGCTACTCCAGCTATGACTCTGGCA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGGGGCTGCTTAGAGATTaGGACCATTCGGTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIEGLLRD*DHSVQV
Trigger: AACTTGGACCGAATGGTCCCAATCTCTAAGCAGCCC...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS-3UTR CCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATCATCTTGCTGGCCATaGACAGTCTGGGGACTTTGC +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWASSCWP*TVWGLC
Trigger: GCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAATCTCCCCTGTTGAGTaGCAGATCCTCTGCACCTCG +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRISPVE*QILCTS
Trigger: CGAGGTGCAGAGGATCTGTCACTCAACAGGGGAGAT...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAACTCTCTGCAACTGCTaGAGTAAGGTGGGAGGGAAT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWATLCNC*SKVGGN
Trigger: ATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAGGTCCCATTGCCATTaGTGTACAATACCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWARSHCH*CTIPPG
Trigger: CCCAGGAGGTATTGTACATCAATGGCAATGGGACCT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTTTCCATTATCTTTGTaGTCCGTTCCATCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLFPLSL*SVPSGF
Trigger: GAACCCAGATGGAACGGATCACAAAGATAATGGAAA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGCTGGAGTAGCTGTGTaGTGGAGACTTGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAAGVAV*WRLASI
Trigger: AATGGAAGCAAGTCTCCAGCACACAGCTACTCCAGC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAGCGTGTTTCCGGATTTaGTCTCCATTCGGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRACFRI*SPFGPV
Trigger: GACAGGGCCGAATGGAGAGCAAATCCGGAAACACGC...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTGTGAGTTCAGAAGCTaGAGTTTCATGTGCTTCATG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLCEFRS*SFMCFM
Trigger: CATGAAGCACATGAAACTGCAGCTTCTGAACTCACA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATTACGGATACGTTTTCTaGCACGCTCTTGATACTCAG +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNYGYVF*HALDTQ
Trigger: CTGAGTATCAAGAGCGTGCCAGAAAACGTATCCGTA...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS-3UTR CCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTAAGTGCATTCTTTTCTaGCACTCGGAACAGCTCATT +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLKCILF*HSEQLI
Trigger: AATGAGCTGTTCCGAGTGCCAGAAAAGAATGCACTT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTACTACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAA +
Preference number: 4 (lower is better)
Translates to: STVTRKSAHYLVTITVSTTAEVR*EGIGRE
Trigger: TTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGT...AGTACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000092015.11
CDS-3UTR CCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAA +
Preference number: 4 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIETAEVR*EGIGRE
Trigger: TTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGT...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAATCTGTGGGTCCTCCTaGGAGCCTGGAACAGTAGCT +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRICGSS*EPGTVA
Trigger: AGCTACTGTTCCAGGCTCCCAGGAGGACCCACAGAT...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGACTTCATCTCCCCTGTTaGGTGACAGATCCTCTGCAC +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRLHLPC*VTDPLH
Trigger: GTGCAGAGGATCTGTCACTCAACAGGGGAGATGAAG...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGAATTGTCGCCTGCATaGGTCAATGATAGCCTGGAT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAELSPA*VNDSLD
Trigger: ATCCAGGCTATCATTGACTCATGCAGGCGACAATTC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR TCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGATCCGCCTGCAGGACTTaGGGTAAGTACGGATACGTT +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRSACRT*GKYGYV
Trigger: AACGTATCCGTACTTACCTCAAGTCCTGCAGGCGGA...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
CDS-3UTR TCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGACTCGCTTTCACAGGCTaGAGCCAAGATACTCTCTGC +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRLAFTG*SQDTLC
Trigger: GCAGAGAGTATCTTGGCTTCAGCCTGTGAAAGCGAG...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGAGAAGGCATAGCTCTCTaGAATTGCTTTGTAAGTTCT +
Preference number: 4 (lower is better)
Translates to: DWKWRHLLEVVPDELTYREGIAL*NCFVSS
Trigger: AGAACTTACAAAGCAATTTCAGAGAGCTATGCCTTC...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTTCGTCACTTTCTATTaGGCTTTCATCCTCATCTTG +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLFVTFY*AFILIL
Trigger: CAAGATGAGGATGAAAGCTCAATAGAAAGTGACGAA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGTGTGTGCTGGAGACTTaGTTCCATTTTCTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIECVLET*FHFLSL
Trigger: AAGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACA...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTTCTCCGAATCCTCATaGTCATCATGTTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLFSESS*SSCSSS
Trigger: TGAAGATGAACATGATGAGCATGAGGATTCGGAGAA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAGCAGCTTCATCCTGTaGTTTATCCAGACGCATCCT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWASSFIL*FIQTHP
Trigger: AGGATGCGTCTGGATAAAGCACAGGATGAAGCTGCT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATTGTGAGTTCAGAAGCTaGAGTTTCATGTGCTTCATG +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNCEFRS*SFMCFM
Trigger: CATGAAGCACATGAAACTGCAGCTTCTGAACTCACA...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATGTGATCCGTTCCATCTaGGTTCAAGTGCATTCTTTT +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNVIRSI*VQVHSF
Trigger: AAAAGAATGCACTTGAACCCAGATGGAACGGATCAC...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATGGCCATGGACAGTCTaGGGACTTTGCATTCTTTCT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAWPWTV*GLCILS
Trigger: AGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAA +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWATAEVR*EGIGRE
Trigger: TTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164893.8
CDS-3UTR TCA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTACTTCTCGTTCCATCTTaGGGTCAGAGATTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVLLVPS*GQRLED
Trigger: ATCTTCTAATCTCTGACCTCAAGATGGAACGAGAAG...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp TGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGAGTTTCCATTATCTTTGTaGTCCGTTCCATCTGGGTTC +
Preference number: 4 (lower is better)
Translates to: CFSAQKIPLRVCLTLEIEFPLSL*SVPSGF
Trigger: GAACCCAGATGGAACGGATCACAAAGATAATGGAAA...CTCTATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATTTCTCCGAATCCTCATaGTCATCATGTTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNFSESS*SSCSSS
Trigger: TGAAGATGAACATGATGAGCATGAGGATTCGGAGAA...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAGGGCTGCTTAGAGATTaGGACCATTCGGTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRGLLRD*DHSVQV
Trigger: AACTTGGACCGAATGGTCCCAATCTCTAAGCAGCCC...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACTTCTCGTTCCATCTTaGGGTCAGAGATTAGAAGAT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWALLVPS*GQRLED
Trigger: ATCTTCTAATCTCTGACCTCAAGATGGAACGAGAAG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTATTCTCCGAATCCTCATaGTCATCATGTTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVFSESS*SSCSSS
Trigger: TGAAGATGAACATGATGAGCATGAGGATTCGGAGAA...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR TCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGATCATGTACGCCATTGTaGTTGGCATGTTGTAGTCGA +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRSCTPL*LACCSR
Trigger: TCGACTACAACATGCCAATCACAATGGCGTACATGA...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR TCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATTCGTCACTTTCTATTaGGCTTTCATCCTCATCTTG +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAFVTFY*AFILIL
Trigger: CAAGATGAGGATGAAAGCTCAATAGAAAGTGACGAA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGATGTGTGCTGGAGACTTaGTTCCATTTTCTCTCGCTT +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRCVLET*FHFLSL
Trigger: AAGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACA...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATTCTCCGAATCCTCATaGTCATCATGTTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAFSESS*SSCSSS
Trigger: TGAAGATGAACATGATGAGCATGAGGATTCGGAGAA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR GCA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAATCTTTTCTTTGGGCTaGTTAGAGATTGGGACCATT +
Preference number: 4 (lower is better)
Translates to: SAYDIYADTLKHKATGWAIFSLG*LEIGTI
Trigger: AATGGTCCCAATCTCTAAGCAGCCCAAAGAAAAGAT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAGAGTCAATGATAGCCTaGATCTTTTCTTTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRESMIA*IFSLGC
Trigger: GCAGCCCAAAGAAAAGATCCAGGCTATCATTGACTC...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
3UTR CAA 72 bp ACTGCAAATTTAGAACCCAGTGAGTACAGACATCGTTaGCCTCAGTTCTGTTGTAAAATGAGATTTTCCAGT +
Preference number: 4 (lower is better)
Translates to: TANLEPSEYRHR*PQFCCKMRFSS
Trigger: ACTGGAAAATCTCATTTTACAACAGAACTGAGGCAAACGATGTCTGTACTCACTGGGTTCTAAATTTGCAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGACAACACTCTCATTTTTaGCAGAGTCATAGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRQHSHF*QSHSWS
Trigger: ACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTG...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR GCA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAATCTTTTCTTTGGGCTaGTTAGAGATTGGGACCATT +
Preference number: 4 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRIFSLG*LEIGTI
Trigger: AATGGTCCCAATCTCTAAGCAGCCCAAAGAAAAGAT...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
CDS GCA 90 bp TCAACTCCTACGCCATCCGTGGTCTTGACCCGCACGAAGAGCACTTaGTTGGCGCCGCCGCCTCCCCCACGGACCTCATCAGGCTGGCCC +
Preference number: 5 (lower is better)
Translates to: STPTPSVVLTRTKST*LAPPPPPRTSSGWP
Trigger: GGGCCAGCCTGATGAGGTCCGTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGGGTCAAGACCACGGATGGCGTAGGAGTTGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 90 bp TGTGCAGAGCTGGGGCTGTCACTCAGGTTCAGTGGCTGCTCTTCCTaGTCCAGCCCGGTTTTGCCATCACTGCTGGAGTCCTCGGGCTCC +
Preference number: 5 (lower is better)
Translates to: CAELGLSLRFSGCSS*SSPVLPSLLESSGS
Trigger: GGAGCCCGAGGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAGTGACAGCCCCAGCTCTGCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 90 bp TCCTCGGGCTCCCTGCCATGTGCTCCCCCTGAAGCAGCTGAGCTGTaGCCCAGAGTCTCATTGCCATTAGAGCTCTCTGCAGCAGAGTCA +
Preference number: 5 (lower is better)
Translates to: SSGSLPCAPPEAAEL*PRVSLPLELSAAES
Trigger: TGACTCTGCTGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTCAGGGGGAGCACATGGCAGGGAGCCCGAGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 90 bp GAAGTGAGCTGTGCAGAGCTGGGGCTGTCACTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCGGTTTTGCCATCACTGCTGGAGTCC +
Preference number: 5 (lower is better)
Translates to: EVSCAELGLSLRFSG*SSCSSPVLPSLLES
Trigger: GGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAGTGACAGCCCCAGCTCTGCACAGCTCACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACCGCACGAAGAGCACTaGCTTGGCGCCGCCGCCTCC +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLPHEEH*LGAAAS
Trigger: GGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 90 bp GGTCTGGAGGTTGAGCTGCTGGACGATCCCGAGCCAGTTGCCAGCTaGCTCTTCATGCTCAGATCTGTGGGTCCGCTACTAGAAGTGTCA +
Preference number: 5 (lower is better)
Translates to: GLEVELLDDPEPVAS*LFMLRSVGPLLEVS
Trigger: TGACACTTCTAGTAGCGGACCCACAGATCTGAGCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGTCCAGCAGCTCAACCTCCAGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CCA 90 bp TTGGCGCCGCCGCCTCCCCCACGGACCTCATCAGGCTGGCCCAGCTaGAAACCCTTCGATTTGACCCAGAATTTAAATTTGGCATTGTCG +
Preference number: 5 (lower is better)
Translates to: LAPPPPPRTSSGWPS*KPFDLTQNLNLALS
Trigger: CGACAATGCCAAATTTAAATTCTGGGTCAAATCGAAGGGTTTCCAGCTGGGCCAGCCTGATGAGGTCCGTGGGGGAGGCGGCGGCGCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CCA 90 bp AGCACTTGCTTGGCGCCGCCGCCTCCCCCACGGACCTCATCAGGCTaGCCCAGCTGGAAACCCTTCGATTTGACCCAGAATTTAAATTTG +
Preference number: 5 (lower is better)
Translates to: STCLAPPPPPRTSSG*PSWKPFDLTQNLNL
Trigger: CAAATTTAAATTCTGGGTCAAATCGAAGGGTTTCCAGCTGGGCCAGCCTGATGAGGTCCGTGGGGGAGGCGGCGGCGCCAAGCAAGTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS TCA 90 bp GCCATTGATGTACAATACCTCCTGGGAGCCTGGAACAGTAGCTGTTaGGTAGGTGGCCTGGGCTGCCTCCGGCTTGCACTGTTTGTCAGC +
Preference number: 5 (lower is better)
Translates to: AIDVQYLLGAWNSSC*VGGLGCLRLALFVS
Trigger: GCTGACAAACAGTGCAAGCCGGAGGCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCAGGCTCCCAGGAGGTATTGTACATCAATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCACGATCCCGAGCCAGTaGCCAGCTGCCTCTTCATGC +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSTIPSQ*PAASSC
Trigger: GCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGT...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCAGCTGTCTCACGGCATaGATTTCCGTCGGACTGAGC +
Preference number: 5 (lower is better)
Translates to: GRAWETGGESSLLRSSSISCLTA*ISVGLS
Trigger: GCTCAGTCCGACGGAAATCAATGCCGTGAGACAGCT...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCTGCCCCAGAGTCTCATaGCCATTAGAGCTCTCTGCA +
Preference number: 5 (lower is better)
Translates to: GRAWETGGESSLLRSSSICPRVS*PLELSA
Trigger: TGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCA...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAACGATCCCGAGCCAGTaGCCAGCTGCCTCTTCATGC +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLTIPSQ*PAASSC
Trigger: GCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCGACAGTCTGGGGACTTaGCATTCTTTCTTCCAGGTT +
Preference number: 5 (lower is better)
Translates to: ALEGCLVAQPGASSSEESDSLGT*HSFFQV
Trigger: AACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTC...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGCAGAGCCTGGGAGACAGGAGGGGAGAGTTCGTTGTTAAGATCCAGCTCGATCCTGTGTGCTGGAGACTaGCTTCCATTTTCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: GRAWETGGESSLLRSSSILCAGD*LPFSLA
Trigger: AGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACAG...GATCGAGCTGGATCTTAACAACGAACTCTCCCCTCCTGTCTCCCAGGCTCTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAGCTGTCTCACGGCATaGATTTCCGTCGGACTGAGC +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSSCLTA*ISVGLS
Trigger: GCTCAGTCCGACGGAAATCAATGCCGTGAGACAGCT...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTTACGGGTCACCGTCTaGGTCTTGCCTGAGTCCCCG +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCLRVTV*VLPESP
Trigger: CGGGGACTCAGGCAAGACCAAGACGGTGACCCGTAA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTACGAAGAGCACTTGCTaGGCGCCGCCGCCTCCCCCA +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLTKSTC*APPPPP
Trigger: TGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATCCGCACGAAGAGCACTaGCTTGGCGCCGCCGCCTCC +
Preference number: 5 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNPHEEH*LGAAAS
Trigger: GGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGG...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCATTCTTTCTTCCAGGTaGGAGCTAAGGTCAGAGTTC +
Preference number: 5 (lower is better)
Translates to: ALEGCLVAQPGASSSEESILSSR*ELRSEF
Trigger: GAACTCTGACCTTAGCTCCAACCTGGAAGAAAGAAT...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTGCCCCAGAGTCTCATaGCCATTAGAGCTCTCTGCA +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSCPRVS*PLELSA
Trigger: TGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTCCAGACGCATCCTCTaGGCAGCATTTCTACTCTCG +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSSRRIL*AAFLLS
Trigger: CGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAAGCTGTCTCACGGCATaGATTTCCGTCGGACTGAGC +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLSCLTA*ISVGLS
Trigger: GCTCAGTCCGACGGAAATCAATGCCGTGAGACAGCT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATACGAAGAGCACTTGCTaGGCGCCGCCGCCTCCCCCA +
Preference number: 5 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNTKSTC*APPPPP
Trigger: TGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGT...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAAGCGTGTTTCCGGATTaGCTCTCCATTCGGCCCTGT +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLSVFPD*LSIRPC
Trigger: ACAGGGCCGAATGGAGAGCAAATCCGGAAACACGCT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 90 bp GCAGCAGAGTCATCATCTTGCTGGCCATGGACAGTCTGGGGACTTTaGATTCTTTCTTCCAGGTTGGAGCTAAGGTCAGAGTTCACGGCT +
Preference number: 5 (lower is better)
Translates to: AAESSSCWPWTVWGL*ILSSRLELRSEFTA
Trigger: AGCCGTGAACTCTGACCTTAGCTCCAACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGATGACTCTGCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCTGTGTGCTGGAGACTaGCTTCCATTTTCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSLCAGD*LPFSLA
Trigger: AGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACAG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTCTTCATCTCCCCTGTaGAGTGACAGATCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSSSSPL*SDRSSA
Trigger: TGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTGTCTCACGGCATaGATTTCCGTCGGACTGAGC +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCSCLTA*ISVGLS
Trigger: GCTCAGTCCGACGGAAATCAATGCCGTGAGACAGCT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACCGCACGAAGAGCACTaGCTTGGCGCCGCCGCCTCC +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWAPHEEH*LGAAAS
Trigger: GGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTAGCGTGTTTCCGGATTaGCTCTCCATTCGGCCCTGT +
Preference number: 5 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLSVFPD*LSIRPC
Trigger: ACAGGGCCGAATGGAGAGCAAATCCGGAAACACGCT...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS CCA 90 bp CAGCAGGAGCAGCTTCATCCTGTGCTTTATCCAGACGCATCCTCTTaGCAGCATTTCTACTCTCGCTTTCACAGGCTGAAGCCAAGATAC +
Preference number: 5 (lower is better)
Translates to: QQEQLHPVLYPDASS*QHFYSRFHRLKPRY
Trigger: GTATCTTGGCTTCAGCCTGTGAAAGCGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGATAAAGCACAGGATGAAGCTGCTCCTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTGCTCCAGCCCGGTTTaGCCATCACTGCTGGAGTCC +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLCSSPV*PSLLES
Trigger: GGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCTTTCCCATCACTGCCTaGGTCATCTATCCTGAACTC +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSFPITA*VIYPEL
Trigger: GAGTTCAGGATAGATGACCAAGGCAGTGATGGGAAA...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACTGTGTGCTGGAGACTaGCTTCCATTTTCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLLCAGD*LPFSLA
Trigger: AGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACAG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGCTGTGTGCTGGAGACTaGCTTCCATTTTCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGLCAGD*LPFSLA
Trigger: AGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACAG...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATCTTCATCTCCCCTGTaGAGTGACAGATCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLSSSPL*SDRSSA
Trigger: TGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTCCAGACGCATCCTCTaGGCAGCATTTCTACTCTCG +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCSRRIL*AAFLLS
Trigger: CGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTACGATCCCGAGCCAGTaGCCAGCTGCCTCTTCATGC +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLTIPSQ*PAASSC
Trigger: GCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTTACGGGTCACCGTCTaGGTCTTGCCTGAGTCCCCG +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLLRVTV*VLPESP
Trigger: CGGGGACTCAGGCAAGACCAAGACGGTGACCCGTAA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAACGAAGAGCACTTGCTaGGCGCCGCCGCCTCCCCCA +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWATKSTC*APPPPP
Trigger: TGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GCTCTGGAGGGTTGCTTGGTAGCACAACCAGGGGCGAGCAGCTCTGAGGAAAGCATTCGTCACTTTCTATaGAGCTTTCATCCTCATCTT +
Preference number: 5 (lower is better)
Translates to: ALEGCLVAQPGASSSEESIRHFL*SFHPHL
Trigger: AAGATGAGGATGAAAGCTCAATAGAAAGTGACGAAT...GCTTTCCTCAGAGCTGCTCGCCCCTGGTTGTGCTACCAAGCAACCCTCCAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGACAGTCTGGGGACTTaGCATTCTTTCTTCCAGGTT +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSDSLGT*HSFFQV
Trigger: AACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGTGCCCCAGAGTCTCATaGCCATTAGAGCTCTCTGCA +
Preference number: 5 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLCPRVS*PLELSA
Trigger: TGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCA...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATTTCCCATCACTGCCTaGGTCATCTATCCTGAACTC +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLFPITA*VIYPEL
Trigger: GAGTTCAGGATAGATGACCAAGGCAGTGATGGGAAA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCGCTTCTCGTTCCATCTaGAGGTCAGAGATTAGAAGA +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSASRSI*RSEIRR
Trigger: TCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGC...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCCTGTGTGCTGGAGACTaGCTTCCATTTTCTCTCGCT +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCLCAGD*LPFSLA
Trigger: AGCGAGAGAAAATGGAAGCAAGTCTCCAGCACACAG...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATTTTCTGGCACGCTCTaGATACTCAGGGAATTGTCG +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLFSGTL*ILRELS
Trigger: CGACAATTCCCTGAGTATCAAGAGCGTGCCAGAAAA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CAA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGGACAGTCTGGGGACTTaGCATTCTTTCTTCCAGGTT +
Preference number: 5 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGDSLGT*HSFFQV
Trigger: AACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTC...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS CCA 90 bp TCACAGGCTGAAGCCAAGATACTCTCTGCAACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAATTGAAAGCTTTCAGCCTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: SQAEAKILSATAEVR*EGIGRELKAFSLSA
Trigger: AGCTGAGAGGCTGAAAGCTTTCAATTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGTATCTTGGCTTCAGCCTGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp CGGAACGCAATAAAAATGCAGCCGATTCTCGATAACCGGCGACAAGCTGTCTCATTTCCCATCACTGCCTaGGTCATCTATCCTGAACTC +
Preference number: 5 (lower is better)
Translates to: RNAIKMQPILDNRRQAVSFPITA*VIYPEL
Trigger: GAGTTCAGGATAGATGACCAAGGCAGTGATGGGAAA...TGAGACAGCTTGTCGCCGGTTATCGAGAATCGGCTGCATTTTTATTGCGTTCCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGTCTTCATCTCCCCTGTaGAGTGACAGATCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLSSSPL*SDRSSA
Trigger: TGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGA...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp TCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTACTACGATCCCGAGCCAGTaGCCAGCTGCCTCTTCATGC +
Preference number: 5 (lower is better)
Translates to: STVTRKSAHYLVTITVSTTIPSQ*PAASSC
Trigger: GCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGT...AGTACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR CAA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGATTCTTTCTTCCAGGTaGGAGCTAAGGTCAGAGTTC +
Preference number: 5 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGILSSR*ELRSEF
Trigger: GAACTCTGACCTTAGCTCCAACCTGGAAGAAAGAAT...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS TCA 90 bp AGAGTCATGGTGAATCCTGCTCTTCAACTTAAACACCAGTGTCTGTaGCAGCCCAGTTCTATCATTGCTGATCCAGTATCCCTCAGGCGA +
Preference number: 5 (lower is better)
Translates to: RVMVNPALQLKHQCL*QPSSIIADPVSLRR
Trigger: TCGCCTGAGGGATACTGGATCAGCAATGATAGAACTGGGCTGTCACAGACACTGGTGTTTAAGTTGAAGAGCAGGATTCACCATGACTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS GCA 90 bp TCAGCTTCCACACCATCTGTCTCGTTCACCTTCTCCGAATCCTCATaGTCATCATGTTCATCTTCATCTTCATCTCCCCTGTTGAGTGAC +
Preference number: 5 (lower is better)
Translates to: SASTPSVSFTFSESS*SSCSSSSSSPLLSD
Trigger: GTCACTCAACAGGGGAGATGAAGATGAAGATGAACATGATGAGCATGAGGATTCGGAGAAGGTGAACGAGACAGATGGTGTGGAAGCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGCTTCTCGTTCCATCTaGAGGTCAGAGATTAGAAGA +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCASRSI*RSEIRR
Trigger: TCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGTTGCTTGCTTCTCGTTCCATCTaGAGGTCAGAGATTAGAAGA +
Preference number: 5 (lower is better)
Translates to: NLSNIQSSTPSRCSGGLLASRSI*RSEIRR
Trigger: TCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGC...AAGCAACCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATTACGGGTCACCGTCTaGGTCTTGCCTGAGTCCCCG +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWALRVTV*VLPESP
Trigger: CGGGGACTCAGGCAAGACCAAGACGGTGACCCGTAA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATAGCGTGTTTCCGGATTaGCTCTCCATTCGGCCCTGT +
Preference number: 5 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNSVFPD*LSIRPC
Trigger: ACAGGGCCGAATGGAGAGCAAATCCGGAAACACGCT...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCATTCTTTCTTCCAGGTaGGAGCTAAGGTCAGAGTTC +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCILSSR*ELRSEF
Trigger: GAACTCTGACCTTAGCTCCAACCTGGAAGAAAGAAT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCGGAATAGGTCGAGAATaGAAAGCTTTCAGCCTCTCA +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCGIGRE*KAFSLS
Trigger: TGAGAGGCTGAAAGCTTTCAATTCTCGACCTATTCC...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTCTTCATCTCCCCTGTaGAGTGACAGATCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLSSSPL*SDRSSA
Trigger: TGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATTCCAGACGCATCCTCTaGGCAGCATTTCTACTCTCG +
Preference number: 5 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNSRRIL*AAFLLS
Trigger: CGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGA...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp ACTTGCAACCTCAGTAACATTCAGTCATCTACACCCAGTCGCTGCTCTGGAGGGAATTTAAATTTGGCATaGTCGGTGGAGCTTGACTCT +
Preference number: 5 (lower is better)
Translates to: TCNLSNIQSSTPSRCSGGNLNLA*SVELDS
Trigger: AGAGTCAAGCTCCACCGACAATGCCAAATTTAAATT...CCCTCCAGAGCAGCGACTGGGTGTAGATGACTGAATGTTACTGAGGTTGCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCACCCAGAATTTAAATTaGGCATTGTCGGTGGAGCTT +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCTQNLN*ALSVEL
Trigger: AAGCTCCACCGACAATGCCAAATTTAAATTCTGGGT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCCATAGCTCTCTGAAATaGCTTTGTAAGTTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: GARTAWHDGNASLKRLCSHSSLK*LCKFSS
Trigger: AGAAGAGAACTTACAAAGCAATTTCAGAGAGCTATG...GCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCCGGCTGACATTCGTGTaGAATCACTCATGTCAAATT +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCRLTFV*NHSCQI
Trigger: AATTTGACATGAGTGATTCAACACGAATGTCAGCCG...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp AAATTCTGGGATGAAAACTTCTGTGGTAAGCTGCCGTGTGGCGTGGGTGTTTTGGGAATAGGTCGAGAATaGAAAGCTTTCAGCCTCTCA +
Preference number: 5 (lower is better)
Translates to: KFWDENFCGKLPCGVGVLGIGRE*KAFSLS
Trigger: TGAGAGGCTGAAAGCTTTCAATTCTCGACCTATTCC...CAAAACACCCACGCCACACGGCAGCTTACCACAGAAGTTTTCATCCCAGAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp AGGCTGCTTCAGTGCACAGAAAATACCACTCAGAGTGTGTCTAACACTAGAAATTCTTCATCTCCCCTGTaGAGTGACAGATCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: RLLQCTENTTQSVSNTRNSSSPL*SDRSSA
Trigger: TGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGA...ATTTCTAGTGTTAGACACACTCTGAGTGGTATTTTCTGTGCACTGAAGCAGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTTTTTCTGGCACGCTCTaGATACTCAGGGAATTGTCG +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLFSGTL*ILRELS
Trigger: CGACAATTCCCTGAGTATCAAGAGCGTGCCAGAAAA...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAGCTGTCTCACGGCATaGATTTCCGTCGGACTGAGC +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWASCLTA*ISVGLS
Trigger: GCTCAGTCCGACGGAAATCAATGCCGTGAGACAGCT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAATTTAAATTTGGCATaGTCGGTGGAGCTTGACTCT +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCNLNLA*SVELDS
Trigger: AGAGTCAAGCTCCACCGACAATGCCAAATTTAAATT...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTATGGAAACCCTTCGATTaGACCCAGAATTTAAATTTG +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLWKPFD*TQNLNL
Trigger: CAAATTTAAATTCTGGGTCAAATCGAAGGGTTTCCA...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAGCGTGTTTCCGGATTaGCTCTCCATTCGGCCCTGT +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWASVFPD*LSIRPC
Trigger: ACAGGGCCGAATGGAGAGCAAATCCGGAAACACGCT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTACATAGCTCTCTGAAATaGCTTTGTAAGTTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLHSSLK*LCKFSS
Trigger: AGAAGAGAACTTACAAAGCAATTTCAGAGAGCTATG...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCAGCAAGCCTAATTCGTCACTTTCTATaGAGCTTTCATCCTCATCTT +
Preference number: 5 (lower is better)
Translates to: GQPGMMEMLPSKGCAASLIRHFL*SFHPHL
Trigger: AAGATGAGGATGAAAGCTCAATAGAAAGTGACGAAT...TAGGCTTGCTGCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS TCA 90 bp AATCCTCATGCTCATCATGTTCATCTTCATCTTCATCTCCCCTGTTaGGTGACAGATCCTCTGCACCTCGATCAACACTCTCATTTTTGC +
Preference number: 5 (lower is better)
Translates to: NPHAHHVHLHLHLPC*VTDPLHLDQHSHFC
Trigger: GCAAAAATGAGAGTGTTGATCGAGGTGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGATGAAGATGAACATGATGAGCATGAGGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATGCCCCAGAGTCTCATaGCCATTAGAGCTCTCTGCA +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWACPRVS*PLELSA
Trigger: TGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCATCCAGACGCATCCTCTaGGCAGCATTTCTACTCTCG +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWASRRIL*AAFLLS
Trigger: CGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGA...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TATGGAGCAAGGACAGCCTGGCATGATGGAAATGCTTCCCTCAAAAGGTTGTGCTGGAAACCCTTCGATTaGACCCAGAATTTAAATTTG +
Preference number: 5 (lower is better)
Translates to: YGARTAWHDGNASLKRLCWKPFD*TQNLNL
Trigger: CAAATTTAAATTCTGGGTCAAATCGAAGGGTTTCCA...GCACAACCTTTTGAGGGAAGCATTTCCATCATGCCAGGCTGTCCTTGCTCCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTATCCTCCAGATGGTGCTaGGAAGAGCCTTTCATGCAT +
Preference number: 5 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVSSRWC*EEPFMH
Trigger: ATGCATGAAAGGCTCTTCCAAGCACCATCTGGAGGA...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081423.13
CDS GCA 90 bp CTCATGTCAAATTCGTCACTTTCTATTGAGCTTTCATCCTCATCTTaGTGTGAGTTCAGAAGCTGCAGTTTCATGTGCTTCATGTACGCC +
Preference number: 5 (lower is better)
Translates to: LMSNSSLSIELSSSS*CEFRSCSFMCFMYA
Trigger: GGCGTACATGAAGCACATGAAACTGCAGCTTCTGAACTCACAGCAAGATGAGGATGAAAGCTCAATAGAAAGTGACGAATTTGACATGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTATTTCCCATCACTGCCTaGGTCATCTATCCTGAACTC +
Preference number: 5 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVFPITA*VIYPEL
Trigger: GAGTTCAGGATAGATGACCAAGGCAGTGATGGGAAA...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTACCCAGAATTTAAATTaGGCATTGTCGGTGGAGCTT +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLTQNLN*ALSVEL
Trigger: AAGCTCCACCGACAATGCCAAATTTAAATTCTGGGT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GACTGGAAATGGAGGCATCTCTTGGAAGTAGTTCCTGATGAGTTGACTTACAGACGGCTGACATTCGTGTaGAATCACTCATGTCAAATT +
Preference number: 5 (lower is better)
Translates to: DWKWRHLLEVVPDELTYRRLTFV*NHSCQI
Trigger: AATTTGACATGAGTGATTCAACACGAATGTCAGCCG...TCTGTAAGTCAACTCATCAGGAACTACTTCCAAGAGATGCCTCCATTTCCAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp TGTCCACAGTTACAAGAAAAAGTGCACATTACCTGGTCACAATCACAGTCAGTAGCTTCTCGTTCCATCTaGAGGTCAGAGATTAGAAGA +
Preference number: 5 (lower is better)
Translates to: CPQLQEKVHITWSQSQSVASRSI*RSEIRR
Trigger: TCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGC...TACTGACTGTGATTGTGACCAGGTAATGTGCACTTTTTCTTGTAACTGTGGACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000081423.13
ENSMUST00000092015.11
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGCTTCTCGTTCCATCTaGAGGTCAGAGATTAGAAGA +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWAASRSI*RSEIRR
Trigger: TCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGATCTTCATCTCCCCTGTaGAGTGACAGATCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRSSSPL*SDRSSA
Trigger: TGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGA...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTCATAGCTCTCTGAAATaGCTTTGTAAGTTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLHSSLK*LCKFSS
Trigger: AGAAGAGAACTTACAAAGCAATTTCAGAGAGCTATG...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp GGCACATTTGAGCATCTCAAGTACTTCAAGGTCAGAGTTCCTGTGAAGTTCCTTATTCGTCACTTTCTATaGAGCTTTCATCCTCATCTT +
Preference number: 5 (lower is better)
Translates to: GTFEHLKYFKVRVPVKFLIRHFL*SFHPHL
Trigger: AAGATGAGGATGAAAGCTCAATAGAAAGTGACGAAT...AAGGAACTTCACAGGAACTCTGACCTTGAAGTACTTGAGATGCTCAAATGTGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAGGAATAGGTCGAGAATaGAAAGCTTTCAGCCTCTCA +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWAGIGRE*KAFSLS
Trigger: TGAGAGGCTGAAAGCTTTCAATTCTCGACCTATTCC...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGATTTCCCATCACTGCCTaGGTCATCTATCCTGAACTC +
Preference number: 5 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRFPITA*VIYPEL
Trigger: GAGTTCAGGATAGATGACCAAGGCAGTGATGGGAAA...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAGCCTGACAAACATATaGAAAGCTTTCAGCCTCTCA +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWASLTNI*KAFSLS
Trigger: TGAGAGGCTGAAAGCTTTCAATATGTTTGTCAGGCT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000164186.8
CDS-3UTR CAA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGATTTTCTGGCACGCTCTaGATACTCAGGGAATTGTCG +
Preference number: 5 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRFSGTL*ILRELS
Trigger: CGACAATTCCCTGAGTATCAAGAGCGTGCCAGAAAA...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACGGCTGACATTCGTGTaGAATCACTCATGTCAAATT +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWARLTFV*NHSCQI
Trigger: AATTTGACATGAGTGATTCAACACGAATGTCAGCCG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCATTGTTGTCATATCCTGTAGCAACAAGAAATTTGGCTTTTTATTTCCCCAGAGCTTCTCGTTCCATCTaGAGGTCAGAGATTAGAAGA +
Preference number: 5 (lower is better)
Translates to: SLLSYPVATRNLAFYFPRASRSI*RSEIRR
Trigger: TCTTCTAATCTCTGACCTCAAGATGGAACGAGAAGC...TCTGGGGAAATAAAAAGCCAAATTTCTTGTTGCTACAGGATATGACAACAATGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAAATTTAAATTTGGCATaGTCGGTGGAGCTTGACTCT +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWANLNLA*SVELDS
Trigger: AGAGTCAAGCTCCACCGACAATGCCAAATTTAAATT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCACATAGCTCTCTGAAATaGCTTTGTAAGTTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWAHSSLK*LCKFSS
Trigger: AGAAGAGAACTTACAAAGCAATTTCAGAGAGCTATG...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS-3UTR CAA 90 bp TCTGCTTATGATATTTATGCTGACACACTAAAACATAAAGCAACAGGCTGGGCAATTCGTCACTTTCTATaGAGCTTTCATCCTCATCTT +
Preference number: 5 (lower is better)
Translates to: SAYDIYADTLKHKATGWAIRHFL*SFHPHL
Trigger: AAGATGAGGATGAAAGCTCAATAGAAAGTGACGAAT...TGCCCAGCCTGTTGCTTTATGTTTTAGTGTGTCAGCATAAATATCATAAGCAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 90 bp ACTCCTACGCCATCCGTGGTCTTGACCCGCACGAAGAGCACTTGCTaGGCGCCGCCGCCTCCCCCACGGACCTCATCAGGCTGGCCCAGC +
Preference number: 6 (lower is better)
Translates to: TPTPSVVLTRTKSTC*APPPPPRTSSGWPS
Trigger: GCTGGGCCAGCCTGATGAGGTCCGTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGGGTCAAGACCACGGATGGCGTAGGAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 72 bp CCATCCGTGGTCTTGACCCGCACGAAGAGCACTTGCTaGGCGCCGCCGCCTCCCCCACGGACCTCATCAGGC +
Preference number: 6 (lower is better)
Translates to: PSVVLTRTKSTC*APPPPPRTSSG
Trigger: GCCTGATGAGGTCCGTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGGGTCAAGACCACGGATGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp ACGCCATCCGTGGTCTTGACCCGCACGAAGAGCACTTaGTTGGCGCCGCCGCCTCCCCCACGGACCTCATCA +
Preference number: 6 (lower is better)
Translates to: TPSVVLTRTKST*LAPPPPPRTSS
Trigger: TGATGAGGTCCGTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGGGTCAAGACCACGGATGGCGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 90 bp ATCAACTCCTACGCCATCCGTGGTCTTGACCCGCACGAAGAGCACTaGCTTGGCGCCGCCGCCTCCCCCACGGACCTCATCAGGCTGGCC +
Preference number: 6 (lower is better)
Translates to: INSYAIRGLDPHEEH*LGAAASPTDLIRLA
Trigger: GGCCAGCCTGATGAGGTCCGTGGGGGAGGCGGCGGCGCCAAGCAAGTGCTCTTCGTGCGGGTCAAGACCACGGATGGCGTAGGAGTTGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp GCTGCTCTTCCTGCTCCAGCCCGGTTTTGCCATCACTaGTGGAGTCCTCGGGCTCCCTGCCATGTGCTCCCC +
Preference number: 6 (lower is better)
Translates to: AALPAPARFCHH*WSPRAPCHVLP
Trigger: GGGGAGCACATGGCAGGGAGCCCGAGGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CCA 72 bp GCTCTTCCTGCTCCAGCCCGGTTTTGCCATCACTGCTaGAGTCCTCGGGCTCCCTGCCATGTGCTCCCCCTG +
Preference number: 6 (lower is better)
Translates to: ALPAPARFCHHC*SPRAPCHVLPL
Trigger: CAGGGGGAGCACATGGCAGGGAGCCCGAGGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS TCA 72 bp CTGTGGGTCCTCCTGGGAGCCTGGAACAGTAGCTGTTaGGTAGGTGGCCTGGGCTGCCTCCGGCTTGCACTG +
Preference number: 6 (lower is better)
Translates to: LWVLLGAWNSSC*VGGLGCLRLAL
Trigger: CAGTGCAAGCCGGAGGCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCAGGCTCCCAGGAGGACCCACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097651.10
CDS GCA 72 bp CTGGGGCTGTCACTCAGGTTCAGTGGCTGCTCTTCCTaGTCCAGCCCGGTTTTGCCATCACTGCTGGAGTCC +
Preference number: 6 (lower is better)
Translates to: LGLSLRFSGCSS*SSPVLPSLLES
Trigger: GGACTCCAGCAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAGTGACAGCCCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS TCA 72 bp GTACAATACCTCCTGGGAGCCTGGAACAGTAGCTGTTaGGTAGGTGGCCTGGGCTGCCTCCGGCTTGCACTG +
Preference number: 6 (lower is better)
Translates to: VQYLLGAWNSSC*VGGLGCLRLAL
Trigger: CAGTGCAAGCCGGAGGCAGCCCAGGCCACCTACTCAACAGCTACTGTTCCAGGCTCCCAGGAGGTATTGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp TGTGCAGAGCTGGGGCTGTCACTCAGGTTCAGTGGCTaGTCTTCCTGCTCCAGCCCGGTTTTGCCATCACTG +
Preference number: 6 (lower is better)
Translates to: CAELGLSLRFSG*SSCSSPVLPSL
Trigger: CAGTGATGGCAAAACCGGGCTGGAGCAGGAAGAGCAGCCACTGAACCTGAGTGACAGCCCCAGCTCTGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp TCCCTGCCATGTGCTCCCCCTGAAGCAGCTGAGCTGTaGCCCAGAGTCTCATTGCCATTAGAGCTCTCTGCA +
Preference number: 6 (lower is better)
Translates to: SLPCAPPEAAEL*PRVSLPLELSA
Trigger: TGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCACAGCTCAGCTGCTTCAGGGGGAGCACATGGCAGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp GTTGAGCTGCTGGACGATCCCGAGCCAGTTGCCAGCTaGCTCTTCATGCTCAGATCTGTGGGTCCGCTACTA +
Preference number: 6 (lower is better)
Translates to: VELLDDPEPVAS*LFMLRSVGPLL
Trigger: TAGTAGCGGACCCACAGATCTGAGCATGAAGAGGCAGCTGGCAACTGGCTCGGGATCGTCCAGCAGCTCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp GCTGTGCCCCAGAGTCTCATTGCCATTAGAGCTCTCTaGAGCAGAGTCATCATCTTGCTGGCCATGGACAGT +
Preference number: 6 (lower is better)
Translates to: AVPQSLIAIRAL*SRVIILLAMDS
Trigger: ACTGTCCATGGCCAGCAAGATGATGACTCTGCTGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS TCA 72 bp ACACCAGTGTCTGTGACAGCCCAGTTCTATCATTGCTaGTCCAGTATCCCTCAGGCGAGGTCCAACCTTTCC +
Preference number: 6 (lower is better)
Translates to: TPVSVTAQFYHC*SSIPQARSNLS
Trigger: GGAAAGGTTGGACCTCGCCTGAGGGATACTGGATCAGCAATGATAGAACTGGGCTGTCACAGACACTGGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS CAA 90 bp TGCAGCAGAGTCATCATCTTGCTGGCCATGGACAGTCTGGGGACTTaGCATTCTTTCTTCCAGGTTGGAGCTAAGGTCAGAGTTCACGGC +
Preference number: 6 (lower is better)
Translates to: CSRVIILLAMDSLGT*HSFFQVGAKVRVHG
Trigger: GCCGTGAACTCTGACCTTAGCTCCAACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGATGACTCTGCTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 90 bp CTCTTCAACTTAAACACCAGTGTCTGTGACAGCCCAGTTCTATCATaGCTGATCCAGTATCCCTCAGGCGAGGTCCAACCTTTCCCGGGA +
Preference number: 6 (lower is better)
Translates to: LFNLNTSVCDSPVLS*LIQYPSGEVQPFPG
Trigger: TCCCGGGAAAGGTTGGACCTCGCCTGAGGGATACTGGATCAGCAATGATAGAACTGGGCTGTCACAGACACTGGTGTTTAAGTTGAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS TCA 72 bp TTGTCGGTGGAGCTTGACTCTGAGCCGTTGAGAAGCTaGACAATCCGCTCATATTTCTTACGGGTCACCGTC +
Preference number: 6 (lower is better)
Translates to: LSVELDSEPLRS*TIRSYFLRVTV
Trigger: GACGGTGACCCGTAAGAAATATGAGCGGATTGTTCAGCTTCTCAACGGCTCAGAGTCAAGCTCCACCGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp GCTGTGCCCCAGAGTCTCATTGCCATTAGAGCTCTCTaGAGCAGAGTCATGGTGAATCCTGCTCTTCAACTT +
Preference number: 6 (lower is better)
Translates to: AVPQSLIAIRAL*SRVMVNPALQL
Trigger: AAGTTGAAGAGCAGGATTCACCATGACTCTGCTGCAGAGAGCTCTAATGGCAATGAGACTCTGGGGCACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS CCA 72 bp GCAGCAGAGTCATCATCTTGCTGGCCATGGACAGTCTaGGGACTTTGCATTCTTTCTTCCAGGTTGGAGCTA +
Preference number: 6 (lower is better)
Translates to: AAESSSCWPWTV*GLCILSSRLEL
Trigger: TAGCTCCAACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGATGACTCTGCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 90 bp TCAGCAGGAGCAGCTTCATCCTGTGCTTTATCCAGACGCATCCTCTaGGCAGCATTTCTACTCTCGCTTTCACAGGCTGAAGCCAAGATA +
Preference number: 6 (lower is better)
Translates to: SAGAASSCALSRRIL*AAFLLSLSQAEAKI
Trigger: TATCTTGGCTTCAGCCTGTGAAAGCGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGATAAAGCACAGGATGAAGCTGCTCCTGCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 90 bp TGCTGGCCATGGACAGTCTGGGGACTTTGCATTCTTTCTTCCAGGTaGGAGCTAAGGTCAGAGTTCACGGCTGACATTCGTGTTGAATCA +
Preference number: 6 (lower is better)
Translates to: CWPWTVWGLCILSSR*ELRSEFTADIRVES
Trigger: TGATTCAACACGAATGTCAGCCGTGAACTCTGACCTTAGCTCCAACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp ACAGATCCTCTGCACCTCGATCAACACTCTCATTTTTaGCAGAGTCATAGCTGGAGTAGCTGTGTGCTGGAG +
Preference number: 6 (lower is better)
Translates to: TDPLHLDQHSHF*QSHSWSSCVLE
Trigger: CTCCAGCACACAGCTACTCCAGCTATGACTCTGGCAAAAATGAGAGTGTTGATCGAGGTGCAGAGGATCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS GCA 72 bp TCATCATCTTGCTGGCCATGGACAGTCTGGGGACTTTaGATTCTTTCTTCCAGGTTGGAGCTAAGGTCAGAG +
Preference number: 6 (lower is better)
Translates to: SSSCWPWTVWGL*ILSSRLELRSE
Trigger: CTCTGACCTTAGCTCCAACCTGGAAGAAAGAATGCAAAGTCCCCAGACTGTCCATGGCCAGCAAGATGATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CCA 72 bp CAGCTTCATCCTGTGCTTTATCCAGACGCATCCTCTTaGCAGCATTTCTACTCTCGCTTTCACAGGCTGAAG +
Preference number: 6 (lower is better)
Translates to: QLHPVLYPDASS*QHFYSRFHRLK
Trigger: CTTCAGCCTGTGAAAGCGAGAGTAGAAATGCTGCCAAGAGGATGCGTCTGGATAAAGCACAGGATGAAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 72 bp TTAAACACCAGTGTCTGTGACAGCCCAGTTCTATCATaGCTGATCCAGTATCCCTCAGGCGAGGTCCAACCT +
Preference number: 6 (lower is better)
Translates to: LNTSVCDSPVLS*LIQYPSGEVQP
Trigger: AGGTTGGACCTCGCCTGAGGGATACTGGATCAGCAATGATAGAACTGGGCTGTCACAGACACTGGTGTTTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000069215.13
ENSMUST00000092015.11
CDS TCA 72 bp ATTTGGCATTGTCGGTGGAGCTTGACTCTGAGCCGTTaGGAAGCTGAACAATCCGCTCATATTTCTTACGGG +
Preference number: 6 (lower is better)
Translates to: IWHCRWSLTLSR*EAEQSAHISYG
Trigger: CCCGTAAGAAATATGAGCGGATTGTTCAGCTTCTCAACGGCTCAGAGTCAAGCTCCACCGACAATGCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CCA 72 bp GAAGCCAAGATACTCTCTGCAACTGCTGAAGTAAGGTaGGAGGGAATAGGTCGAGAATTGAAAGCTTTCAGC +
Preference number: 6 (lower is better)
Translates to: EAKILSATAEVR*EGIGRELKAFS
Trigger: GCTGAAAGCTTTCAATTCTCGACCTATTCCCTCCCACCTTACTTCAGCAGTTGCAGAGAGTATCTTGGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164893.8
CDS CAA 72 bp AGCTGGAAACCCTTCGATTTGACCCAGAATTTAAATTaGGCATTGTCGGTGGAGCTTGACTCTGAGCCGTTG +
Preference number: 6 (lower is better)
Translates to: SWKPFDLTQNLN*ALSVELDSEPL
Trigger: CAACGGCTCAGAGTCAAGCTCCACCGACAATGCCAAATTTAAATTCTGGGTCAAATCGAAGGGTTTCCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CCA 72 bp AGGAGGCTTTCCATTATCTTTGTGATCCGTTCCATCTaGGTTCAAGTGCATTCTTTTCTGGCACTCGGAACA +
Preference number: 6 (lower is better)
Translates to: RRLSIIFVIRSI*VQVHSFLALGT
Trigger: TGTTCCGAGTGCCAGAAAAGAATGCACTTGAACCCAGATGGAACGGATCACAAAGATAATGGAAAGCCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
ENSMUST00000165323.2
CDS CAA 72 bp AAACCCTTCGATTTGACCCAGAATTTAAATTTGGCATaGTCGGTGGAGCTTGACTCTGAGCCGTTGAGAAGC +
Preference number: 6 (lower is better)
Translates to: KPFDLTQNLNLA*SVELDSEPLRS
Trigger: GCTTCTCAACGGCTCAGAGTCAAGCTCCACCGACAATGCCAAATTTAAATTCTGGGTCAAATCGAAGGGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 90 bp GAATCCTCATGCTCATCATGTTCATCTTCATCTTCATCTCCCCTGTaGAGTGACAGATCCTCTGCACCTCGATCAACACTCTCATTTTTG +
Preference number: 6 (lower is better)
Translates to: ESSCSSCSSSSSSPL*SDRSSAPRSTLSFL
Trigger: CAAAAATGAGAGTGTTGATCGAGGTGCAGAGGATCTGTCACTCAACAGGGGAGATGAAGATGAAGATGAACATGATGAGCATGAGGATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000069215.13
ENSMUST00000081423.13
ENSMUST00000092015.11
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8
CDS CAA 72 bp GTGTTGAATCACTCATGTCAAATTCGTCACTTTCTATaGAGCTTTCATCCTCATCTTGCTGTGAGTTCAGAA +
Preference number: 6 (lower is better)
Translates to: VLNHSCQIRHFL*SFHPHLAVSSE
Trigger: TTCTGAACTCACAGCAAGATGAGGATGAAAGCTCAATAGAAAGTGACGAATTTGACATGAGTGATTCAACAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000081423.13
ENSMUST00000097651.10
ENSMUST00000164186.8
ENSMUST00000164893.8