Pregenerated sensors for NOG (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048616Ensembl transcript IDs: ENSMUST00000061728.5
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTAGATCCATCAAGTGTCTaGGCGCGGGCAGGGGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: PASPCEGYWDINSRLTLLDPSSV*ARAGGP Trigger: GGGGCCCCCTGCCCGCGCCCAGACACTTGATGGATC...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| 3UTR-3UTR TCA 90 bp | CCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTACCAACAACCAAGCCGGGTAACTTTTaGCGTATAATACTGACCTTT | + |
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Preference number: 2 (lower is better) Translates to: PCEGYWDINSRLTLLPTTKPGNF*RIILTF Trigger: AAAGGTCAGTATTATACGTCAAAAGTTACCCGGCTT...GGTTGTTGGTAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| 3UTR-3UTR GCA 90 bp | CCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTACCAACAACCTACACAGTTAAACAGTaGATTACAGGAACCAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: PCEGYWDINSRLTLLPTTYTVKQ*ITGTRK Trigger: CTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTA...GGTTGTTGGTAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR GCA 90 bp | CCTACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCGTGGCCAAAAGCGGCTaGCTAGGTCATTCCACGCGT | + |
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Preference number: 4 (lower is better) Translates to: PTQLNSALQEPESQVSVAVAKSG*LGHSTR Trigger: ACGCGTGGAATGACCTAGGCAGCCGCTTTTGGCCAC...GGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR TCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTAGCCACCGCAGCACCGTaGGGTGCACAGACTTGGATG | + |
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Preference number: 4 (lower is better) Translates to: PASPCEGYWDINSRLTLLATAAP*GAQTWM Trigger: CATCCAAGTCTGTGCACCTCACGGTGCTGCGGTGGC...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR GCA 90 bp | TACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCAATCAGGCGCTGTTTCTTaGCTTGGGCCAAGCCCTCGG | + |
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Preference number: 4 (lower is better) Translates to: YTVKQCITGTRKPGLCSQSGAVS*LGPSPR Trigger: CCGAGGGCTTGGCCCAAGGCAAGAAACAGCGCCTGA...TTGGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTAGGGGCAGGTTGTCGCTaGGTGCTGGGCGGATGTGTA | + |
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Preference number: 4 (lower is better) Translates to: PASPCEGYWDINSRLTLLGAGCR*VLGGCV Trigger: TACACATCCGCCCAGCACCCAGCGACAACCTGCCCC...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR TCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTAAGAACTCCAGCCCTTTaGTCTCGCTCGGCATGGCCC | + |
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Preference number: 4 (lower is better) Translates to: PASPCEGYWDINSRLTLLRTPAL*SRSAWP Trigger: GGGCCATGCCGAGCGAGATCAAAGGGCTGGAGTTCT...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR TCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTAAGCAGGAGCGCTTGCTaGAGCAGCTGCCCACCTTCA | + |
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Preference number: 4 (lower is better) Translates to: PASPCEGYWDINSRLTLLSRSAC*SSCPPS Trigger: TGAAGGTGGGCAGCTGCTTCAGCAAGCGCTCCTGCT...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR GCA 90 bp | CCTACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCTCCTCCTCAGCTTCTTaGTCAGGCGCTGTTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: PTQLNSALQEPESQVSVASSSAS*SGAVSC Trigger: GCAAGAAACAGCGCCTGAGCAAGAAGCTGAGGAGGA...GGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR GCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTAATGGCTTACACACCATaGCCTCGGGCACAGAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: PASPCEGYWDINSRLTLLMAYTP*PRAQSR Trigger: CCTGCTCTGTGCCCGAGGGCATGGTGTGTAAGCCAT...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR GCA 90 bp | TACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCAACGCAGCACCGTGAGGTaGACAGACTTGGATGGCTTA | + |
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Preference number: 4 (lower is better) Translates to: YTVKQCITGTRKPGLCSQRSTVR*TDLDGL Trigger: TAAGCCATCCAAGTCTGTGCACCTCACGGTGCTGCG...TTGGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTACGCTGTTTCTTGCCTTaGGCCAAGCCCTCGGAGAAC | + |
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Preference number: 4 (lower is better) Translates to: PASPCEGYWDINSRLTLLRCFLP*AKPSEN Trigger: GTTCTCCGAGGGCTTGGCCCAAGGCAAGAAACAGCG...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR TCA 90 bp | CCTACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCACTTACACTCGGAAATaGTGGGGTACTGGATGGGAA | + |
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Preference number: 4 (lower is better) Translates to: PTQLNSALQEPESQVSVATYTRK*WGTGWE Trigger: TTCCCATCCAGTACCCCATCATTTCCGAGTGTAAGT...GGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CCA 90 bp | CCTACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCGTCAAAGATAGGGTCTaGATGTTCGATGAGGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: PTQLNSALQEPESQVSVAVKDRV*MFDEVH Trigger: GTGGACCTCATCGAACATCCAGACCCTATCTTTGAC...GGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CCA 90 bp | CCTGCTTCGCCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTAGTGCACAGACTTGGATaGCTTACACACCATGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: PASPCEGYWDINSRLTLLVHRLG*LTHHAL Trigger: GAGGGCATGGTGTGTAAGCCATCCAAGTCTGTGCAC...TAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGGCGAAGCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CCA 90 bp | CCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTACCAACAACCGAAATGATGGGGTACTaGATGGGAATCCAGCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: PCEGYWDINSRLTLLPTTEMMGY*MGIQPQ Trigger: CTGCGGCTGGATTCCCATCCAGTACCCCATCATTTC...GGTTGTTGGTAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS CCA 90 bp | CCGCTGACAGCGCCACCGCAGCACCGTGAGGTGCACAGACTTGGATaGCTTACACACCATGCCCTCGGGCACAGAGCAGGAGCGCTTGCT | + |
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Preference number: 5 (lower is better) Translates to: PLTAPPQHREVHRLG*LTHHALGHRAGALA Trigger: AGCAAGCGCTCCTGCTCTGTGCCCGAGGGCATGGTGTGTAAGCCATCCAAGTCTGTGCACCTCACGGTGCTGCGGTGGCGCTGTCAGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS TCA 90 bp | ATGGCTTACACACCATGCCCTCGGGCACAGAGCAGGAGCGCTTGCTaGAGCAGCTGCCCACCTTCACGTAGCGTGGCCAAAAGCGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: MAYTPCPRAQSRSAC*SSCPPSRSVAKSGC Trigger: GCAGCCGCTTTTGGCCACGCTACGTGAAGGTGGGCAGCTGCTTCAGCAAGCGCTCCTGCTCTGTGCCCGAGGGCATGGTGTGTAAGCCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CAA 90 bp | TACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCAATCCACCAGGGGCAGGTaGTCGCTGGGTGCTGGGCGG | + |
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Preference number: 5 (lower is better) Translates to: YTVKQCITGTRKPGLCSQSTRGR*SLGAGR Trigger: CCGCCCAGCACCCAGCGACAACCTGCCCCTGGTGGA...TTGGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CAA 90 bp | TACACAGTTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCAACTCAGGCGCTGTTTCTaGCCTTGGGCCAAGCCCTCG | + |
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Preference number: 5 (lower is better) Translates to: YTVKQCITGTRKPGLCSQLRRCF*PWAKPS Trigger: CGAGGGCTTGGCCCAAGGCAAGAAACAGCGCCTGAG...TTGGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAACTGTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CAA 90 bp | TTAAACAGTGCATTACAGGAACCAGAAAGCCAGGTCTCTGTAGCCAAGAAGAAAACAGAGCAGGAGCGCTaGCTGAAGCAGCTGCCCACC | + |
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Preference number: 5 (lower is better) Translates to: LNSALQEPESQVSVAKKKTEQER*LKQLPT Trigger: GGTGGGCAGCTGCTTCAGCAAGCGCTCCTGCTCTGT...TTTCTTCTTGGCTACAGAGACCTGGCTTTCTGGTTCCTGTAATGCACTGTTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CAA 90 bp | CCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTACCAACAACCGAGAACTCCAGCCCTTaGATCTCGCTCGGCATGGCC | + |
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Preference number: 5 (lower is better) Translates to: PCEGYWDINSRLTLLPTTENSSP*ISLGMA Trigger: GGCCATGCCGAGCGAGATCAAAGGGCTGGAGTTCTC...GGTTGTTGGTAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CAA 90 bp | CCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTACCAACAACCGCGCTGTTTCTTGCCTaGGGCCAAGCCCTCGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: PCEGYWDINSRLTLLPTTALFLA*GQALGE Trigger: TTCTCCGAGGGCTTGGCCCAAGGCAAGAAACAGCGC...GGTTGTTGGTAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS-3UTR CAA 90 bp | CCATGCGAAGGGTACTGGGATATAAATAGCAGGTTAACATTATTACCAACAACCTTCCTCCTCAGCTTCTaGCTCAGGCGCTGTTTCTTG | + |
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Preference number: 5 (lower is better) Translates to: PCEGYWDINSRLTLLPTTFLLSF*LRRCFL Trigger: CAAGAAACAGCGCCTGAGCAAGAAGCTGAGGAGGAA...GGTTGTTGGTAATAATGTTAACCTGCTATTTATATCCCAGTACCCTTCGCATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS GCA 72 bp | CCTTTGATCTCGCTCGGCATGGCCCCCGACGGCCGCTaGCGCAGCAGCTGGTCCAGCTCCGCCAGGTCCTCG | + |
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Preference number: 6 (lower is better) Translates to: PLISLGMAPDGR*RSSWSSSARSS Trigger: CGAGGACCTGGCGGAGCTGGACCAGCTGCTGCGGCAGCGGCCGTCGGGGGCCATGCCGAGCGAGATCAAAGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS CAA 90 bp | CGCTGTTTCTTGCCTTGGGCCAAGCCCTCGGAGAACTCCAGCCCTTaGATCTCGCTCGGCATGGCCCCCGACGGCCGCTGCCGCAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RCFLPWAKPSENSSP*ISLGMAPDGRCRSS Trigger: GCTGCTGCGGCAGCGGCCGTCGGGGGCCATGCCGAGCGAGATCAAAGGGCTGGAGTTCTCCGAGGGCTTGGCCCAAGGCAAGAAACAGCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS CAA 72 bp | TTGCCTTGGGCCAAGCCCTCGGAGAACTCCAGCCCTTaGATCTCGCTCGGCATGGCCCCCGACGGCCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LPWAKPSENSSP*ISLGMAPDGRC Trigger: GCAGCGGCCGTCGGGGGCCATGCCGAGCGAGATCAAAGGGCTGGAGTTCTCCGAGGGCTTGGCCCAAGGCAA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS CCA 72 bp | GCGCCACCGCAGCACCGTGAGGTGCACAGACTTGGATaGCTTACACACCATGCCCTCGGGCACAGAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: APPQHREVHRLG*LTHHALGHRAG Trigger: TCCTGCTCTGTGCCCGAGGGCATGGTGTGTAAGCCATCCAAGTCTGTGCACCTCACGGTGCTGCGGTGGCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS TCA 72 bp | ACACCATGCCCTCGGGCACAGAGCAGGAGCGCTTGCTaGAGCAGCTGCCCACCTTCACGTAGCGTGGCCAAA | + |
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Preference number: 6 (lower is better) Translates to: TPCPRAQSRSAC*SSCPPSRSVAK Trigger: TTTGGCCACGCTACGTGAAGGTGGGCAGCTGCTTCAGCAAGCGCTCCTGCTCTGTGCCCGAGGGCATGGTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS GCA 72 bp | AGCTGCCCACCTTCACGTAGCGTGGCCAAAAGCGGCTaGCTAGGTCATTCCACGCGTACAGCACCGGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SCPPSRSVAKSG*LGHSTRTAPGR Trigger: TCTGCCCGGTGCTGTACGCGTGGAATGACCTAGGCAGCCGCTTTTGGCCACGCTACGTGAAGGTGGGCAGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS GCA 72 bp | ACTTCCTCCTCAGCTTCTTGCTCAGGCGCTGTTTCTTaGCTTGGGCCAAGCCCTCGGAGAACTCCAGCCCTT | + |
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Preference number: 6 (lower is better) Translates to: TSSSASCSGAVS*LGPSPRRTPAL Trigger: AAGGGCTGGAGTTCTCCGAGGGCTTGGCCCAAGGCAAGAAACAGCGCCTGAGCAAGAAGCTGAGGAGGAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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| CDS CAA 72 bp | AACTTCCTCCTCAGCTTCTTGCTCAGGCGCTGTTTCTaGCCTTGGGCCAAGCCCTCGGAGAACTCCAGCCCT | + |
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Preference number: 6 (lower is better) Translates to: NFLLSFLLRRCF*PWAKPSENSSP Trigger: AGGGCTGGAGTTCTCCGAGGGCTTGGCCCAAGGCAAGAAACAGCGCCTGAGCAAGAAGCTGAGGAGGAAGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061728.5 |
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