Pregenerated sensors for NODAL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037171Ensembl transcript IDs: ENSMUST00000049339.7
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGTTCATAAACCCTATTTCCAGGGAGCCCAGCGAGCCAGCCCCTaGAAGGCTTCCCCATCCTGCCATGCCACGGTAGCCTCTCTCTGG | + |
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Preference number: 1 (lower is better) Translates to: AVHKPYFQGAQRASP*KASPSCHATVASLW Trigger: CCAGAGAGAGGCTACCGTGGCATGGCAGGATGGGGAAGCCTTGCAGGGGCTGGCTCGCTGGGCTCCCTGGAAATAGGGTTTATGAACTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR GCA 90 bp | CTCTGGCTTCTAAAGTCCACCATGGCCAGTCCCCTCTTGGACAAGTaGCCACCTCTCTGGTCAAAGGCACCAACTGGCCCTGGAGAACTG | + |
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Preference number: 1 (lower is better) Translates to: LWLLKSTMASPLLDK*PPLWSKAPTGPGEL Trigger: CAGTTCTCCAGGGCCAGTTGGTGCCTTTGACCAGAGAGGTGGGCACTTGTCCAAGAGGGGACTGGCCATGGTGGACTTTAGAAGCCAGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR CCA 90 bp | TTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCAGGACTCTaGCTTCTAAAGTCCACCATGGCCAGTCCCCTCTTGGACAAGTGC | + |
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Preference number: 1 (lower is better) Translates to: LIDLGCVCQAYISGL*LLKSTMASPLLDKC Trigger: GCACTTGTCCAAGAGGGGACTGGCCATGGTGGACTTTAGAAGCCAGAGTCCTGAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR GCA 90 bp | CCCCTGACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGAAGGTTGTGGGTCTTTTCCCCATCCTGCCATaGCACGGTAGCCTCTCTCTG | + |
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Preference number: 2 (lower is better) Translates to: PLTKASMSLPASQKVVGLFPILP*HGSLSL Trigger: CAGAGAGAGGCTACCGTGGCATGGCAGGATGGGGAA...AAGACCCACAACCTTCTGGCTGGCTGGCAGTGACATACTGGCCTTGGTCAGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR GCA 90 bp | TCTTGGACAAGTGCCCACCTCTCTGGTCAAAGGCACCAACTGGCCCTGGAGAACAAGGCTTCCCCATCCTaGCATGCCACGGTAGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: SWTSAHLSGQRHQLALENKASPS*HATVAS Trigger: AGAGGCTACCGTGGCATGGCAGGATGGGGAAGCCTT...GTTCTCCAGGGCCAGTTGGTGCCTTTGACCAGAGAGGTGGGCACTTGTCCAAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR CCA 90 bp | CAGTTCATAAACCCTATTTCCAGGGAGCCCAGCGAGCCAGCCCCTGCAAGGCTTAACGTTTCTGCTCCCTaGATAGACACAATGGAGTCT | + |
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Preference number: 2 (lower is better) Translates to: QFINPISREPSEPAPARLNVSAP*IDTMES Trigger: AGACTCCATTGTGTCTATCCAGGGAGCAGAAACGTT...AAGCCTTGCAGGGGCTGGCTCGCTGGGCTCCCTGGAAATAGGGTTTATGAACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR GCA 90 bp | TCTTGGACAAGTGCCCACCTCTCTGGTCAAAGGCACCAACTGGCCCTGGAGAACATCAGCATTGTGGAATaGAAGCCAATTTCAGCACTC | + |
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Preference number: 2 (lower is better) Translates to: SWTSAHLSGQRHQLALENISIVE*KPISAL Trigger: GAGTGCTGAAATTGGCTTGCATTCCACAATGCTGAT...GTTCTCCAGGGCCAGTTGGTGCCTTTGACCAGAGAGGTGGGCACTTGTCCAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR CCA 90 bp | ATTAGAGATCAGAGAGCCCCTGACCAAGGCCAGTATGTCACTGCCAGCCAGCCAACAATGGAGTCTCCTTaGAGTTCATCAGCATTGTGG | + |
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Preference number: 2 (lower is better) Translates to: IRDQRAPDQGQYVTASQPTMESP*SSSALW Trigger: CCACAATGCTGATGAACTCCAAGGAGACTCCATTGT...TGGCTGGCTGGCAGTGACATACTGGCCTTGGTCAGGGGCTCTCTGATCTCTAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR TCA 90 bp | CCCCTGACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGAAGGTTGTGGGTCTTGTCACAGACCACTTTTaGGAATACAAGAAAGTTACA | + |
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Preference number: 2 (lower is better) Translates to: PLTKASMSLPASQKVVGLVTDHF*EYKKVT Trigger: TGTAACTTTCTTGTATTCTCAAAAGTGGTCTGTGAC...AAGACCCACAACCTTCTGGCTGGCTGGCAGTGACATACTGGCCTTGGTCAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR CCA 90 bp | GACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGAAGGTTGTGGGTCTTCCCTAAGTTCATCAGCATTGTaGAATGCAAGCCAATTTCAG | + |
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Preference number: 2 (lower is better) Translates to: DQGQYVTASQPEGCGSSLSSSAL*NASQFQ Trigger: CTGAAATTGGCTTGCATTCCACAATGCTGATGAACT...TAGGGAAGACCCACAACCTTCTGGCTGGCTGGCAGTGACATACTGGCCTTGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR GCA 72 bp | AAACCCTATTTCCAGGGAGCCCAGCGAGCCAGCCCCTaGAAGGCTTCCCCATCCTGCCATGCCACGGTAGCC | + |
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Preference number: 3 (lower is better) Translates to: KPYFQGAQRASP*KASPSCHATVA Trigger: GGCTACCGTGGCATGGCAGGATGGGGAAGCCTTGCAGGGGCTGGCTCGCTGGGCTCCCTGGAAATAGGGTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR CCA 72 bp | GCTTCCCCATCCTGCCATGCCACGGTAGCCTCTCTCTaGCTTGGCAGGTCTAAGAGCACTGTATGCACAGGG | + |
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Preference number: 3 (lower is better) Translates to: ASPSCHATVASL*LGRSKSTVCTG Trigger: CCCTGTGCATACAGTGCTCTTAGACCTGCCAAGCCAGAGAGAGGCTACCGTGGCATGGCAGGATGGGGAAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR CCA 72 bp | ATGGCCAGTCCCCTCTTGGACAAGTGCCCACCTCTCTaGTCAAAGGCACCAACTGGCCCTGGAGAACTGGAC | + |
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Preference number: 3 (lower is better) Translates to: MASPLLDKCPPL*SKAPTGPGELD Trigger: GTCCAGTTCTCCAGGGCCAGTTGGTGCCTTTGACCAGAGAGGTGGGCACTTGTCCAAGAGGGGACTGGCCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR GCA 72 bp | CTAAAGTCCACCATGGCCAGTCCCCTCTTGGACAAGTaGCCACCTCTCTGGTCAAAGGCACCAACTGGCCCT | + |
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Preference number: 3 (lower is better) Translates to: LKSTMASPLLDK*PPLWSKAPTGP Trigger: AGGGCCAGTTGGTGCCTTTGACCAGAGAGGTGGGCACTTGTCCAAGAGGGGACTGGCCATGGTGGACTTTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR CCA 72 bp | TTGGGTTGTGTCTGCCAAGCATACATCTCAGGACTCTaGCTTCTAAAGTCCACCATGGCCAGTCCCCTCTTG | + |
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Preference number: 3 (lower is better) Translates to: LGCVCQAYISGL*LLKSTMASPLL Trigger: CAAGAGGGGACTGGCCATGGTGGACTTTAGAAGCCAGAGTCCTGAGATGTATGCTTGGCAGACACAACCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR CAA 90 bp | ATTAGAGATCAGAGAGCCCCTGACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGGTCACAGACCACTTTaGAGAATACAAGAAAGTTAC | + |
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Preference number: 3 (lower is better) Translates to: IRDQRAPDQGQYVTASQPGHRPL*RIQESY Trigger: GTAACTTTCTTGTATTCTCAAAAGTGGTCTGTGACC...TGGCTGGCTGGCAGTGACATACTGGCCTTGGTCAGGGGCTCTCTGATCTCTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR CCA 72 bp | TCCAGCAGGCAGAACTCTTCTAACGTTTCTGCTCCCTaGATAGACACAATGGAGTCTCCTTGGAGTTCATCA | + |
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Preference number: 3 (lower is better) Translates to: SSRQNSSNVSAP*IDTMESPWSSS Trigger: TGATGAACTCCAAGGAGACTCCATTGTGTCTATCCAGGGAGCAGAAACGTTAGAAGAGTTCTGCCTGCTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR-3UTR CAA 90 bp | AATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCACTTCCCTACCACAGCTaGAGGCAGGGAGAACCAAAT | + |
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Preference number: 3 (lower is better) Translates to: NCHRLLIDLGCVCQAYISLPYHS*RQGEPN Trigger: ATTTGGTTCTCCCTGCCTCAAGCTGTGGTAGGGAAG...TGAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR TCA 72 bp | ATCTTGAGGGAGGGACAGCAGGTCACAGACCACTTTTaGGAATACAAGAAAGTTACAGATGGCATCAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: ILREGQQVTDHF*EYKKVTDGIKN Trigger: ATTTTTGATGCCATCTGTAACTTTCTTGTATTCTCAAAAGTGGTCTGTGACCTGCTGTCCCTCCCTCAAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR GCA 72 bp | AATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTaGCAAGCATACATCTCAGGACTCTGGCTTCTAAAG | + |
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Preference number: 3 (lower is better) Translates to: NCHRLLIDLGCV*QAYISGLWLLK Trigger: CTTTAGAAGCCAGAGTCCTGAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | TCTTGGACAAGTGCCCACCTCTCTGGTCAAAGGCACCAACTGGCCCTGGAGAACCCTGGAGGCTGCGGATaGTGTCCGCCCGAGGCAGCG | + |
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Preference number: 4 (lower is better) Translates to: SWTSAHLSGQRHQLALENPGGCG*CPPEAA Trigger: CGCTGCCTCGGGCGGACATCATCCGCAGCCTCCAGG...GTTCTCCAGGGCCAGTTGGTGCCTTTGACCAGAGAGGTGGGCACTTGTCCAAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | CAGCCAGAAGGTTGTGGGTCTTCCCTACCACAGCTTGAGGCAGGGAGAACCAAAGACAGCTGTCCCTCCTaGGCCCGCCAGGAGCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: QPEGCGSSLPQLEAGRTKDSCPS*ARQELS Trigger: TGAGAGCTCCTGGCGGGCCCAGGAGGGACAGCTGTC...TTTGGTTCTCCCTGCCTCAAGCTGTGGTAGGGAAGACCCACAACCTTCTGGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | GACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGAAGGTTGTGGGTCTTCCCTAGGCGACAGGTACAGGTaGGGTGTAGGGCTGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: DQGQYVTASQPEGCGSSLGDRYR*GVGLMP Trigger: TGGCATCAGCCCTACACCCCACCTGTACCTGTCGCC...TAGGGAAGACCCACAACCTTCTGGCTGGCTGGCAGTGACATACTGGCCTTGGTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | CAGTTCATAAACCCTATTTCCAGGGAGCCCAGCGAGCCAGCCCCTGCAAGGCTTGGAACCCGGTGGGGTTaGTATCGTTTCAGCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: QFINPISREPSEPAPARLGTRWG*YRFSRL Trigger: GAGCCTGCTGAAACGATACCAACCCCACCGGGTTCC...AAGCCTTGCAGGGGCTGGCTCGCTGGGCTCCCTGGAAATAGGGTTTATGAACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | CAGAGAGCCCCTGACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGAAGGTTGTGGAAAATGTCAATGGTaGGTGGGCCCTCAGTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: QRAPDQGQYVTASQPEGCGKCQW*VGPQWV Trigger: TACCCACTGAGGGCCCACTCACCATTGACATTTTCC...ACAACCTTCTGGCTGGCTGGCAGTGACATACTGGCCTTGGTCAGGGGCTCTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | GACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGAAGGTTGTGGGTCTTCCCTAAGTCCACCTGGAACTTaGCCCTCCTACACAGTTGGC | + |
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Preference number: 4 (lower is better) Translates to: DQGQYVTASQPEGCGSSLSPPGT*PSYTVG Trigger: GCCAACTGTGTAGGAGGGTCAAGTTCCAGGTGGACT...TAGGGAAGACCCACAACCTTCTGGCTGGCTGGCAGTGACATACTGGCCTTGGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | CCCCTGACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGAAGGTTGTGGGTCTTACAATCATGTCCTTGTaGTGTTCCAGGAGGACCCTG | + |
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Preference number: 4 (lower is better) Translates to: PLTKASMSLPASQKVVGLTIMSL*CSRRTL Trigger: CAGGGTCCTCCTGGAACACCACAAGGACATGATTGT...AAGACCCACAACCTTCTGGCTGGCTGGCAGTGACATACTGGCCTTGGTCAGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | GGAGTTCATCAGCATTGTGGAATGCAAGCCAATTTCAGCACTCCCCCTGGCTCTAGAGCCCAACAGGCTTaGAGAAGAAGGATGCGGAGG | + |
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Preference number: 4 (lower is better) Translates to: GVHQHCGMQANFSTPPGSRAQQA*RRRMRR Trigger: CCTCCGCATCCTTCTTCTTCAAGCCTGTTGGGCTCT...AGAGCCAGGGGGAGTGCTGAAATTGGCTTGCATTCCACAATGCTGATGAACTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR GCA 90 bp | TTAGAGATCAGAGAGCCCCTGACCAAGGCCAGTATGTCACTGCCAGCCAGCCAGATGCCAACACTTTTCTaGTCGACTGGACACCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LEIREPLTKASMSLPASQMPTLF*STGHLL Trigger: AAGCAGGTGTCCAGTCGAGCAGAAAAGTGTTGGCAT...CTGGCTGGCTGGCAGTGACATACTGGCCTTGGTCAGGGGCTCTCTGATCTCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | AGGGACAGCAGGTCACAGACCACTTTTGAGAATACAAGAAAGTTACAGATGGCACGGGGGCACAGCACGTaGAAGGAACCCGGTGGGGTT | + |
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Preference number: 4 (lower is better) Translates to: RDSRSQTTFENTRKLQMARGHST*KEPGGV Trigger: AACCCCACCGGGTTCCTTCCACGTGCTGTGCCCCCG...TGCCATCTGTAACTTTCTTGTATTCTCAAAAGTGGTCTGTGACCTGCTGTCCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | TATATATACACCCCAGCCTTTGCACACAATTTCAAGCAGTTCATAAACCCTATTCGCCAGAGGGGACGGTaGCGAGGGCTGCCCCCGTGT | + |
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Preference number: 4 (lower is better) Translates to: YIYTPAFAHNFKQFINPIRQRGR*RGLPPC Trigger: ACACGGGGGCAGCCCTCGTCACCGTCCCCTCTGGCG...AATAGGGTTTATGAACTGCTTGAAATTGTGTGCAAAGGCTGGGGTGTATATATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | GGGGCTTTTCTCTTTAGCTCCAGCAGGCAGAACTCTTCTAACGTTTCTGCTCCCGAGGCAAACGTGACCTaGGAAGGAATGACGGTGAAC | + |
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Preference number: 4 (lower is better) Translates to: GAFLFSSSRQNSSNVSAPEANVT*EGMTVN Trigger: GTTCACCGTCATTCCTTCTCAGGTCACGTTTGCCTC...GGGAGCAGAAACGTTAGAAGAGTTCTGCCTGCTGGAGCTAAAGAGAAAAGCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | CTCTTTAGCTCCAGCAGGCAGAACTCTTCTAACGTTTCTGCTCCCTGGATAGACGGTTGGAGTAGAGCATaGGCACATTGGTGCTGGCGA | + |
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Preference number: 4 (lower is better) Translates to: LFSSSRQNSSNVSAPWIDGWSRA*AHWCWR Trigger: TCGCCAGCACCAATGTGCTCATGCTCTACTCCAACC...GTCTATCCAGGGAGCAGAAACGTTAGAAGAGTTCTGCCTGCTGGAGCTAAAGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR GCA 90 bp | GGAGTTCATCAGCATTGTGGAATGCAAGCCAATTTCAGCACTCCCCCTGGCTCTCTTGAAGAAGAAGGATaGGGAGGCTGTGGGCACTCA | + |
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Preference number: 4 (lower is better) Translates to: GVHQHCGMQANFSTPPGSLEEEG*GGCGHS Trigger: TGAGTGCCCACAGCCTCCGCATCCTTCTTCTTCAAG...AGAGCCAGGGGGAGTGCTGAAATTGGCTTGCATTCCACAATGCTGATGAACTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | GGAGTTCATCAGCATTGTGGAATGCAAGCCAATTTCAGCACTCCCCCTGGCTCTGGATCCCCCTTGGCCTaGTGGAAAATGTCAATGGTG | + |
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Preference number: 4 (lower is better) Translates to: GVHQHCGMQANFSTPPGSGSPLA*WKMSMV Trigger: CACCATTGACATTTTCCACCAGGCCAAGGGGGATCC...AGAGCCAGGGGGAGTGCTGAAATTGGCTTGCATTCCACAATGCTGATGAACTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR GCA 90 bp | AGGGACAGCAGGTCACAGACCACTTTTGAGAATACAAGAAAGTTACAGATGGCAGCTCGACTGGACACCTaGTTTTCCAGTGCCCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: RDSRSQTTFENTRKLQMAARLDT*FSSALG Trigger: CCCCAGGGCACTGGAAAAGCAGGTGTCCAGTCGAGC...TGCCATCTGTAACTTTCTTGTATTCTCAAAAGTGGTCTGTGACCTGCTGTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | TATATATACACCCCAGCCTTTGCACACAATTTCAAGCAGTTCATAAACCCTATTGTCGGGGCGCGCGGGTaGAGTAGAGCCCAACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: YIYTPAFAHNFKQFINPIVGARG*SRAQQA Trigger: AGCCTGTTGGGCTCTACTCCACCCGCGCGCCCCGAC...AATAGGGTTTATGAACTGCTTGAAATTGTGTGCAAAGGCTGGGGTGTATATATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| 3UTR CAA 72 bp | ATAGACACAATGGAGTCTCCTTGGAGTTCATCAGCATaGTGGAATGCAAGCCAATTTCAGCACTCCCCCTGG | + |
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Preference number: 4 (lower is better) Translates to: IDTMESPWSSSA*WNASQFQHSPW Trigger: CCAGGGGGAGTGCTGAAATTGGCTTGCATTCCACAATGCTGATGAACTCCAAGGAGACTCCATTGTGTCTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR GCA 90 bp | GAATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCACGTCTCCATCCAAATaGGCTCCAGGCAGTCAGCGG | + |
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Preference number: 4 (lower is better) Translates to: ELSQTFNRLGLCLPSIHLTSPSK*APGSQR Trigger: CCGCTGACTGCCTGGAGCGCATTTGGATGGAGACGT...GAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | TATATATACACCCCAGCCTTTGCACACAATTTCAAGCAGTTCATAAACCCTATTCAGTGGGTATGTCCATaGGGCCCGGCAGCTGCAACC | + |
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Preference number: 4 (lower is better) Translates to: YIYTPAFAHNFKQFINPIQWVCP*GPAAAT Trigger: GGTTGCAGCTGCCGGGCCCCATGGACATACCCACTG...AATAGGGTTTATGAACTGCTTGAAATTGTGTGCAAAGGCTGGGGTGTATATATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | AATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCAGCATGGTTGGTAGGATaGAACTCCTCCCCCACAGGG | + |
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Preference number: 4 (lower is better) Translates to: NCHRLLIDLGCVCQAYISAWLVG*NSSPTG Trigger: CCCTGTGGGGGAGGAGTTTCATCCTACCAACCATGC...TGAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | GAATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCACTTGGAGAGTGGCTTaGTCACCTCCAGGACTGTGC | + |
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Preference number: 4 (lower is better) Translates to: ELSQTFNRLGLCLPSIHLTWRVA*SPPGLC Trigger: GCACAGTCCTGGAGGTGACCAAGCCACTCTCCAAGT...GAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | AATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCACTTCTGTCTGGCAAATaGTGTCGGCGTTGCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: NCHRLLIDLGCVCQAYISLLSGK*CRRCLL Trigger: CAGAAGGCAACGCCGACATCATTTGCCAGACAGAAG...TGAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CCA 90 bp | GAATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCAGGTTGAAGTCCACCTaGAACTTGACCCTCCTACAC | + |
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Preference number: 4 (lower is better) Translates to: ELSQTFNRLGLCLPSIHLRLKST*NLTLLH Trigger: GTGTAGGAGGGTCAAGTTCCAGGTGGACTTCAACCT...GAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR TCA 90 bp | GAATTGTCACAGACTTTTAATAGACTTGGGTTGTGTCTGCCAAGCATACATCTCAAGAGAAGTCAAACGTaGAAGTCCAGTTCTGTCCGG | + |
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Preference number: 4 (lower is better) Translates to: ELSQTFNRLGLCLPSIHLKRSQT*KSSSVR Trigger: CCGGACAGAACTGGACTTTCACGTTTGACTTCTCTT...GAGATGTATGCTTGGCAGACACAACCCAAGTCTATTAAAAGTCTGTGACAATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 90 bp | GTCCCTCCTGGGCCCGCCAGGAGCTCTCAGCTTCCCAAAGCAAAGTaGCGCCCCCTAGCTGCCTCTGCTCCTGAGGCCGGTTGGAGTAGA | + |
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Preference number: 5 (lower is better) Translates to: VPPGPARSSQLPKAK*RPLAASAPEAGWSR Trigger: TCTACTCCAACCGGCCTCAGGAGCAGAGGCAGCTAGGGGGCGCCACTTTGCTTTGGGAAGCTGAGAGCTCCTGGCGGGCCCAGGAGGGAC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS TCA 90 bp | CGCCCCCTAGCTGCCTCTGCTCCTGAGGCCGGTTGGAGTAGAGCATaGGCACATTGGTGCTGGCGACAGGTACAGGTGGGGTGTAGGGCT | + |
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Preference number: 5 (lower is better) Translates to: RPLAASAPEAGWSRA*AHWCWRQVQVGCRA Trigger: AGCCCTACACCCCACCTGTACCTGTCGCCAGCACCAATGTGCTCATGCTCTACTCCAACCGGCCTCAGGAGCAGAGGCAGCTAGGGGGCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS TCA 90 bp | AGTTCTGTCCGGTCACGTCCACATCTTGCGCCTGGAGGCTGCGGATaGTGTCCGCCCGAGGCAGCGGGTCTCGGTAGAGGCTCAACATGT | + |
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Preference number: 5 (lower is better) Translates to: SSVRSRPHLAPGGCG*CPPEAAGLGRGSTC Trigger: ACATGTTGAGCCTCTACCGAGACCCGCTGCCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACCGGACAGAACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 90 bp | ATGGTGAGTGGGCCCTCAGTGGGTATGTCCATGGGGCCCGGCAGCTaGAACCGGAGCTCCGCCCATACCAGATCCTCTTCTTGGCTCAAA | + |
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Preference number: 5 (lower is better) Translates to: MVSGPSVGMSMGPGS*NRSSAHTRSSSWLK Trigger: TTTGAGCCAAGAAGAGGATCTGGTATGGGCGGAGCTCCGGTTGCAGCTGCCGGGCCCCATGGACATACCCACTGAGGGCCCACTCACCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 90 bp | AAGTCAAACGTGAAAGTCCAGTTCTGTCCGGTCACGTCCACATCTTaGGCCTGGAGGCTGCGGATGATGTCCGCCCGAGGCAGCGGGTCT | + |
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Preference number: 5 (lower is better) Translates to: KSNVKVQFCPVTSTS*AWRLRMMSARGSGS Trigger: AGACCCGCTGCCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACCGGACAGAACTGGACTTTCACGTTTGACTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 90 bp | TACACAGTTGGCTTCTGTCTGGCAAATGATGTCGGCGTTGCCTTCTaGCCCATCCGCCCCTCTCTACAGACAGCTGTCCCTCCTGGGCCC | + |
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Preference number: 5 (lower is better) Translates to: YTVGFCLANDVGVAF*PIRPSLQTAVPPGP Trigger: GGGCCCAGGAGGGACAGCTGTCTGTAGAGAGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 90 bp | CCAGGAGGACCCTGCCATTGTCCACATAAAGCATGCTCAGTGGCTTaGTCTTCACGGGGGCACAGCACGTGGAAGGAACCCGGTGGGGTT | + |
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Preference number: 5 (lower is better) Translates to: PGGPCHCPHKACSVA*SSRGHSTWKEPGGV Trigger: AACCCCACCGGGTTCCTTCCACGTGCTGTGCCCCCGTGAAGACCAAGCCACTGAGCATGCTTTATGTGGACAATGGCAGGGTCCTCCTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CAA 90 bp | GCCTCTCTCTGGCTTGGCAGGTCTAAGAGCACTGTATGCACAGGGGGCGGGGCTCCCCAGCCAATCAGGTaGAAGTCCACCTGGAACTTG | + |
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Preference number: 5 (lower is better) Translates to: ASLWLGRSKSTVCTGGGAPQPIR*KSTWNL Trigger: CAAGTTCCAGGTGGACTTCAACCTGATTGGCTGGGG...AGCCCCGCCCCCTGTGCATACAGTGCTCTTAGACCTGCCAAGCCAGAGAGAGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 90 bp | GACTGGACACCTGCTTTTCCAGTGCCCTGGGGTCCTTTAGCCACTTaGAGAGTGGCTTGGTCACCTCCAGGACTGTGCTGCCTGAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: DWTPAFPVPWGPLAT*RVAWSPPGLCCLRQ Trigger: TTGCCTCAGGCAGCACAGTCCTGGAGGTGACCAAGCCACTCTCCAAGTGGCTAAAGGACCCCAGGGCACTGGAAAAGCAGGTGTCCAGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS TCA 90 bp | GGCTTGGTCACCTCCAGGACTGTGCTGCCTGAGGCAAACGTGACCTaGGAAGGAATGACGGTGAACGTCTCCATCCAAATGCGCTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: GLVTSRTVLPEANVT*EGMTVNVSIQMRSR Trigger: CCTGGAGCGCATTTGGATGGAGACGTTCACCGTCATTCCTTCTCAGGTCACGTTTGCCTCAGGCAGCACAGTCCTGGAGGTGACCAAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 90 bp | GAAGTCCACCTGGAACTTGACCCTCCTACACAGTTGGCTTCTGTCTaGCAAATGATGTCGGCGTTGCCTTCTGCCCCATCCGCCCCTCTC | + |
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Preference number: 5 (lower is better) Translates to: EVHLELDPPTQLASV*QMMSALPSAPSAPL Trigger: GAGAGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTCAAGTTCCAGGTGGACTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CAA 90 bp | TCTTGGACAAGTGCCCACCTCTCTGGTCAAAGGCACCAACTGGCCCTGGAGAACCGCTCTGGATCCCCCTaGGCCTGGTGGAAAATGTCA | + |
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Preference number: 5 (lower is better) Translates to: SWTSAHLSGQRHQLALENRSGSP*AWWKMS Trigger: TGACATTTTCCACCAGGCCAAGGGGGATCCAGAGCG...GTTCTCCAGGGCCAGTTGGTGCCTTTGACCAGAGAGGTGGGCACTTGTCCAAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 90 bp | CCTTGTGGTGTTCCAGGAGGACCCTGCCATTGTCCACATAAAGCATaGTCAGTGGCTTGGTCTTCACGGGGGCACAGCACGTGGAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: PCGVPGGPCHCPHKA*SVAWSSRGHSTWKE Trigger: TTCCTTCCACGTGCTGTGCCCCCGTGAAGACCAAGCCACTGAGCATGCTTTATGTGGACAATGGCAGGGTCCTCCTGGAACACCACAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 90 bp | GCCAACACTTTTCTGCTCGACTGGACACCTGCTTTTCCAGTGCCCTaGGGTCCTTTAGCCACTTGGAGAGTGGCTTGGTCACCTCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: ANTFLLDWTPAFPVP*GPLATWRVAWSPPG Trigger: TCCTGGAGGTGACCAAGCCACTCTCCAAGTGGCTAAAGGACCCCAGGGCACTGGAAAAGCAGGTGTCCAGTCGAGCAGAAAAGTGTTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CAA 90 bp | GGAGTTCATCAGCATTGTGGAATGCAAGCCAATTTCAGCACTCCCCCTGGCTCTAGGAACCCGGTGGGGTaGGTATCGTTTCAGCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: GVHQHCGMQANFSTPPGSRNPVG*VSFQQA Trigger: AGCCTGCTGAAACGATACCAACCCCACCGGGTTCCT...AGAGCCAGGGGGAGTGCTGAAATTGGCTTGCATTCCACAATGCTGATGAACTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 90 bp | CACACTCCTCCACAATCATGTCCTTGTGGTGTTCCAGGAGGACCCTaGCATTGTCCACATAAAGCATGCTCAGTGGCTTGGTCTTCACGG | + |
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Preference number: 5 (lower is better) Translates to: HTPPQSCPCGVPGGP*HCPHKACSVAWSSR Trigger: CCGTGAAGACCAAGCCACTGAGCATGCTTTATGTGGACAATGGCAGGGTCCTCCTGGAACACCACAAGGACATGATTGTGGAGGAGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CAA 90 bp | GGAGTTCATCAGCATTGTGGAATGCAAGCCAATTTCAGCACTCCCCCTGGCTCTGACCCTCCTACACAGTaGGCTTCTGTCTGGCAAATG | + |
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Preference number: 5 (lower is better) Translates to: GVHQHCGMQANFSTPPGSDPPTQ*ASVWQM Trigger: CATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTC...AGAGCCAGGGGGAGTGCTGAAATTGGCTTGCATTCCACAATGCTGATGAACTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS-3UTR CAA 90 bp | TATATATACACCCCAGCCTTTGCACACAATTTCAAGCAGTTCATAAACCCTATTAGCATGCTCAGTGGCTaGGTCTTCACGGGGGCACAG | + |
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Preference number: 5 (lower is better) Translates to: YIYTPAFAHNFKQFINPISMLSG*VFTGAQ Trigger: CTGTGCCCCCGTGAAGACCAAGCCACTGAGCATGCT...AATAGGGTTTATGAACTGCTTGAAATTGTGTGCAAAGGCTGGGGTGTATATATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS TCA 72 bp | CGGTCACGTCCACATCTTGCGCCTGGAGGCTGCGGATaGTGTCCGCCCGAGGCAGCGGGTCTCGGTAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: RSRPHLAPGGCG*CPPEAAGLGRG Trigger: GCCTCTACCGAGACCCGCTGCCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 72 bp | CTCAACATGTACGCCAGAGGGGACGGTGACGAGGGCTaGCCCCGTGTCCACAGAGGCAAAGCGGCCGCGGTC | + |
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Preference number: 6 (lower is better) Translates to: LNMYARGDGDEG*PRVHRGKAAAV Trigger: GACCGCGGCCGCTTTGCCTCTGTGGACACGGGGGCAGCCCTCGTCACCGTCCCCTCTGGCGTACATGTTGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | GGGCCCGCCAGGAGCTCTCAGCTTCCCAAAGCAAAGTaGCGCCCCCTAGCTGCCTCTGCTCCTGAGGCCGGT | + |
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Preference number: 6 (lower is better) Translates to: GPARSSQLPKAK*RPLAASAPEAG Trigger: ACCGGCCTCAGGAGCAGAGGCAGCTAGGGGGCGCCACTTTGCTTTGGGAAGCTGAGAGCTCCTGGCGGGCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | GTCCAGTTCTGTCCGGTCACGTCCACATCTTGCGCCTaGAGGCTGCGGATGATGTCCGCCCGAGGCAGCGGG | + |
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Preference number: 6 (lower is better) Translates to: VQFCPVTSTSCA*RLRMMSARGSG Trigger: CCCGCTGCCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACCGGACAGAACTGGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | CCCCATCCGCCCCTCTCTACAGACAGCTGTCCCTCCTaGGCCCGCCAGGAGCTCTCAGCTTCCCAAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: PHPPLSTDSCPS*ARQELSASQSK Trigger: TTTGCTTTGGGAAGCTGAGAGCTCCTGGCGGGCCCAGGAGGGACAGCTGTCTGTAGAGAGGGGCGGATGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS TCA 72 bp | GCTGCCTCTGCTCCTGAGGCCGGTTGGAGTAGAGCATaGGCACATTGGTGCTGGCGACAGGTACAGGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: AASAPEAGWSRA*AHWCWRQVQVG Trigger: CCCCACCTGTACCTGTCGCCAGCACCAATGTGCTCATGCTCTACTCCAACCGGCCTCAGGAGCAGAGGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 72 bp | GTGAAAGTCCAGTTCTGTCCGGTCACGTCCACATCTTaGGCCTGGAGGCTGCGGATGATGTCCGCCCGAGGC | + |
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Preference number: 6 (lower is better) Translates to: VKVQFCPVTSTS*AWRLRMMSARG Trigger: GCCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACCGGACAGAACTGGACTTTCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 72 bp | CGTGAAAGTCCAGTTCTGTCCGGTCACGTCCACATCTaGCGCCTGGAGGCTGCGGATGATGTCCGCCCGAGG | + |
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Preference number: 6 (lower is better) Translates to: RESPVLSGHVHI*RLEAADDVRPR Trigger: CCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACCGGACAGAACTGGACTTTCACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 90 bp | CGACTGGACACCTGCTTTTCCAGTGCCCTGGGGTCCTTTAGCCACTaGGAGAGTGGCTTGGTCACCTCCAGGACTGTGCTGCCTGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: RLDTCFSSALGSFSH*ESGLVTSRTVLPEA Trigger: TGCCTCAGGCAGCACAGTCCTGGAGGTGACCAAGCCACTCTCCAAGTGGCTAAAGGACCCCAGGGCACTGGAAAAGCAGGTGTCCAGTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 72 bp | GGCTTCTGTCTGGCAAATGATGTCGGCGTTGCCTTCTaGCCCATCCGCCCCTCTCTACAGACAGCTGTCCCT | + |
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Preference number: 6 (lower is better) Translates to: GFCLANDVGVAF*PIRPSLQTAVP Trigger: AGGGACAGCTGTCTGTAGAGAGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | TGCTCAGTGGCTTGGTCTTCACGGGGGCACAGCACGTaGAAGGAACCCGGTGGGGTTGGTATCGTTTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: CSVAWSSRGHST*KEPGGVGIVSA Trigger: TGCTGAAACGATACCAACCCCACCGGGTTCCTTCCACGTGCTGTGCCCCCGTGAAGACCAAGCCACTGAGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 90 bp | GACCCTCCTACACAGTTGGCTTCTGTCTGGCAAATGATGTCGGCGTaGCCTTCTGCCCCATCCGCCCCTCTCTACAGACAGCTGTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: DPPTQLASVWQMMSA*PSAPSAPLYRQLSL Trigger: GAGGGACAGCTGTCTGTAGAGAGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 90 bp | CTTGGTCTTCACGGGGGCACAGCACGTGGAAGGAACCCGGTGGGGTaGGTATCGTTTCAGCAGGCTCTGGATGTAGGCATGGTTGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: LGLHGGTARGRNPVG*VSFQQALDVGMVGR Trigger: CCTACCAACCATGCCTACATCCAGAGCCTGCTGAAACGATACCAACCCCACCGGGTTCCTTCCACGTGCTGTGCCCCCGTGAAGACCAAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS TCA 72 bp | TTGACCCTCCTACACAGTTGGCTTCTGTCTGGCAAATaGTGTCGGCGTTGCCTTCTGCCCCATCCGCCCCTC | + |
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Preference number: 6 (lower is better) Translates to: LTLLHSWLLSGK*CRRCLLPHPPL Trigger: GAGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 72 bp | GTTCCAGGAGGACCCTGCCATTGTCCACATAAAGCATaGTCAGTGGCTTGGTCTTCACGGGGGCACAGCACG | + |
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Preference number: 6 (lower is better) Translates to: VPGGPCHCPHKA*SVAWSSRGHST Trigger: CGTGCTGTGCCCCCGTGAAGACCAAGCCACTGAGCATGCTTTATGTGGACAATGGCAGGGTCCTCCTGGAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | CCCTGCCATTGTCCACATAAAGCATGCTCAGTGGCTTaGTCTTCACGGGGGCACAGCACGTGGAAGGAACCC | + |
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Preference number: 6 (lower is better) Translates to: PCHCPHKACSVA*SSRGHSTWKEP Trigger: GGGTTCCTTCCACGTGCTGTGCCCCCGTGAAGACCAAGCCACTGAGCATGCTTTATGTGGACAATGGCAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | GAGCATGAGCACATTGGTGCTGGCGACAGGTACAGGTaGGGTGTAGGGCTGATGCCAACACTTTTCTGCTCG | + |
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Preference number: 6 (lower is better) Translates to: EHEHIGAGDRYR*GVGLMPTLFCS Trigger: CGAGCAGAAAAGTGTTGGCATCAGCCCTACACCCCACCTGTACCTGTCGCCAGCACCAATGTGCTCATGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 72 bp | ACACAGTTGGCTTCTGTCTGGCAAATGATGTCGGCGTaGCCTTCTGCCCCATCCGCCCCTCTCTACAGACAG | + |
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Preference number: 6 (lower is better) Translates to: TQLASVWQMMSA*PSAPSAPLYRQ Trigger: CTGTCTGTAGAGAGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | CTGGAACTTGACCCTCCTACACAGTTGGCTTCTGTCTaGCAAATGATGTCGGCGTTGCCTTCTGCCCCATCC | + |
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Preference number: 6 (lower is better) Translates to: LELDPPTQLASV*QMMSALPSAPS Trigger: GGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTCAAGTTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 90 bp | GCCAATCAGGTTGAAGTCCACCTGGAACTTGACCCTCCTACACAGTaGGCTTCTGTCTGGCAAATGATGTCGGCGTTGCCTTCTGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: ANQVEVHLELDPPTQ*ASVWQMMSALPSAP Trigger: TGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTCAAGTTCCAGGTGGACTTCAACCTGATTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS TCA 72 bp | ACCTCCAGGACTGTGCTGCCTGAGGCAAACGTGACCTaGGAAGGAATGACGGTGAACGTCTCCATCCAAATG | + |
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Preference number: 6 (lower is better) Translates to: TSRTVLPEANVT*EGMTVNVSIQM Trigger: CATTTGGATGGAGACGTTCACCGTCATTCCTTCTCAGGTCACGTTTGCCTCAGGCAGCACAGTCCTGGAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CCA 72 bp | ATCCAGGAGCCCCAGCCAATCAGGTTGAAGTCCACCTaGAACTTGACCCTCCTACACAGTTGGCTTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: IQEPQPIRLKST*NLTLLHSWLLS Trigger: AGACAGAAGCCAACTGTGTAGGAGGGTCAAGTTCCAGGTGGACTTCAACCTGATTGGCTGGGGCTCCTGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 72 bp | GAGCCCCAGCCAATCAGGTTGAAGTCCACCTGGAACTaGACCCTCCTACACAGTTGGCTTCTGTCTGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: EPQPIRLKSTWN*TLLHSWLLSGK Trigger: TTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTCAAGTTCCAGGTGGACTTCAACCTGATTGGCTGGGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS GCA 72 bp | CCACAATCATGTCCTTGTGGTGTTCCAGGAGGACCCTaGCATTGTCCACATAAAGCATGCTCAGTGGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: PQSCPCGVPGGP*HCPHKACSVAW Trigger: CCAAGCCACTGAGCATGCTTTATGTGGACAATGGCAGGGTCCTCCTGGAACACCACAAGGACATGATTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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| CDS CAA 72 bp | GTTGAAGTCCACCTGGAACTTGACCCTCCTACACAGTaGGCTTCTGTCTGGCAAATGATGTCGGCGTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: VEVHLELDPPTQ*ASVWQMMSALP Trigger: AGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGTCAAGTTCCAGGTGGACTTCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049339.7 |
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