RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NOD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055994

Ensembl transcript IDs: ENSMUST00000054324.15, ENSMUST00000109634.3, ENSMUST00000118370.8

Found 504 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTCCATGTTGAATGGCCAAAGACGCTGGAGTCTGCTGTTCAAACATaGGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGCTCAC +
Preference number: 1 (lower is better)
Translates to: VHVEWPKTLESAVQT*GQQPQLSSLRRNAH
Trigger: GTGAGCATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAGACTCCAGCGTCTTTGGCCATTCAACATGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CCA 90 bp GTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTaGGGTCGTTTGAAATTCTGGCCCAGATTAATTCTAAAGAGCTGC +
Preference number: 1 (lower is better)
Translates to: VCCQSSVHRHRLRAW*GRLKFWPRLILKSC
Trigger: GCAGCTCTTTAGAATTAATCTGGGCCAGAATTTCAAACGACCCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR GCA 90 bp TCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATaGTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTT +
Preference number: 1 (lower is better)
Translates to: SNMRAAATAVLTQKK*SHMQAYPVFLLLHL
Trigger: AAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CCA 90 bp GAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTaGTGGGGTCGTTTGAAATTCTGGCCCAGATTAATTCTAAAGAGC +
Preference number: 1 (lower is better)
Translates to: EVCCQSSVHRHRLRA*WGRLKFWPRLILKS
Trigger: GCTCTTTAGAATTAATCTGGGCCAGAATTTCAAACGACCCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR TCA 90 bp TGGATCCACAGCAACAGGCGTTCAGTTAACATCCATGCTTTCCACTaGACCCTTCAGAATCCTGGCCATTCAGAGGCCAGCAACATAGTA +
Preference number: 1 (lower is better)
Translates to: WIHSNRRSVNIHAFH*TLQNPGHSEASNIV
Trigger: TACTATGTTGCTGGCCTCTGAATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCCTGTTGCTGTGGATCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CAA 90 bp TCTTCCTCCTCCTCCATCTTCCTCCCACGGGGCAACCAGAGAGGATaGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACT +
Preference number: 2 (lower is better)
Translates to: SSSSSIFLPRGNQRG*CHPHAVRAFPLPVT
Trigger: AGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTGCCCCGTGGGAGGAAGATGGAGGAGGAGGAAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGATGGCCTTAGAGAGTaGGTCCAGACACGGCCAGAG +
Preference number: 2 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGDGLRE*VQTRPE
Trigger: CTCTGGCCGTGTCTGGACTCACTCTCTAAGGCCATC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGTCTGCTGTTCAAACATaGGGGCAGCAGCCACAGCTG +
Preference number: 2 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGSAVQT*GQQPQL
Trigger: CAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAGA...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCGTCACCCACATGCAGTaGGGGCCTTTCCCCTTCCAG +
Preference number: 2 (lower is better)
Translates to: TERPCSERRAWFCPLQASVTHMQ*GPFPFQ
Trigger: CTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGAC...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGAGAACCTTCTCAGCTaGAGAAGCTCGACACCTCAC +
Preference number: 2 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGENLLS*RSSTPH
Trigger: GTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCCACCGACTCCGGGCCTaGTGGGGTCGTTTGAAATTC +
Preference number: 2 (lower is better)
Translates to: TERPCSERRAWFCPLQASHRLRA*WGRLKF
Trigger: GAATTTCAAACGACCCCACCAGGCCCGGAGTCGGTG...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTGTCACCCACATGCAGTaGGGGCCTTTCCCCTTCCAG +
Preference number: 2 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIVTHMQ*GPFPFQ
Trigger: CTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGAC...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR GCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTATTGTGTCACCCACATaGAGTGAGGGCCTTTCCCCT +
Preference number: 2 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAIVSPT*SEGLSP
Trigger: AGGGGAAAGGCCCTCACTGCATGTGGGTGACACAAT...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR GCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGAAAGACGCTGGAGTCTaGTGTTCAAACATGAGGGCA +
Preference number: 2 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGKDAGV*CSNMRA
Trigger: TGCCCTCATGTTTGAACAGCAGACTCCAGCGTCTTT...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTCAGACGGCAATGGGGTaGCTTTCTCTGCTAACAGAA +
Preference number: 2 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAQTAMG*LSLLTE
Trigger: TTCTGTTAGCAGAGAAAGTCACCCCATTGCCGTCTG...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR GCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCATTGTGTCACCCACATaGAGTGAGGGCCTTTCCCCT +
Preference number: 2 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSIVSPT*SEGLSP
Trigger: AGGGGAAAGGCCCTCACTGCATGTGGGTGACACAAT...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCACTAATTCTGCACGGTaGTCCTCTTTAGAGGCAGAA +
Preference number: 2 (lower is better)
Translates to: TERPCSERRAWFCPLQASTNSAR*SSLEAE
Trigger: TTCTGCCTCTAAAGAGGATCACCGTGCAGAATTAGT...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAAACCCTTCAGAATCCTaGCCATTCAGAGGCCAGCAA +
Preference number: 2 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVNPSES*PFRGQQ
Trigger: TTGCTGGCCTCTGAATGGCCAGGATTCTGAAGGGTT...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCAGACGGCAATGGGGTaGCTTTCTCTGCTAACAGAA +
Preference number: 2 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSQTAMG*LSLLTE
Trigger: TTCTGTTAGCAGAGAAAGTCACCCCATTGCCGTCTG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGGTCACCCACATGCAGTaGGGGCCTTTCCCCTTCCAG +
Preference number: 2 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQVTHMQ*GPFPFQ
Trigger: CTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGAC...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR GCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTCACTCAGAAGAAATaGTCACATATGCAAGCATAC +
Preference number: 2 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKLTQKK*SHMQAY
Trigger: GTATGCTTGCATATGTGAGCATTTCTTCTGAGTGAG...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTATCAAGCTCCAGGCCTaGAAACTCCCTAAAACATCA +
Preference number: 2 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIIKLQA*KLPKTS
Trigger: TGATGTTTTAGGGAGTTTTCAGGCCTGGAGCTTGAT...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAATTGTGTCACCCACATaGAGTGAGGGCCTTTCCCCT +
Preference number: 2 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGIVSPT*SEGLSP
Trigger: AGGGGAAAGGCCCTCACTGCATGTGGGTGACACAAT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGACTCAGGCAGGACAAGTaGAGGTATCAGAGTGGGATG +
Preference number: 2 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGLRQDK*RYQSGM
Trigger: CATCCCACTCTGATACCTCCACTTGTCCTGCCTGAG...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGACAGACGGCAATGGGGTaGCTTTCTCTGCTAACAGAA +
Preference number: 2 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGQTAMG*LSLLTE
Trigger: TTCTGTTAGCAGAGAAAGTCACCCCATTGCCGTCTG...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAAAGGCGTCTTGTATGTaGATCCACAGCAACAGGCGT +
Preference number: 2 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGKASCM*IHSNRR
Trigger: ACGCCTGTTGCTGTGGATCCACATACAAGACGCCTT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAGCCAGAGCTGCTTCCTaGATACTCCTCTTCAAAAAG +
Preference number: 2 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGARAAS*ILLFKK
Trigger: CTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTGGC...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGAACCCTTCAGAATCCTaGCCATTCAGAGGCCAGCAA +
Preference number: 2 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQNPSES*PFRGQQ
Trigger: TTGCTGGCCTCTGAATGGCCAGGATTCTGAAGGGTT...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGACTCAGGCAGGACAAGTaGAGGTATCAGAGTGGGATG +
Preference number: 2 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRLRQDK*RYQSGM
Trigger: CATCCCACTCTGATACCTCCACTTGTCCTGCCTGAG...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGAAAGACGCTGGAGTCTaGTGTTCAAACATGAGGGCA +
Preference number: 2 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQKDAGV*CSNMRA
Trigger: TGCCCTCATGTTTGAACAGCAGACTCCAGCGTCTTT...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAGCCAGAGCTGCTTCCTaGATACTCCTCTTCAAAAAG +
Preference number: 2 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRARAAS*ILLFKK
Trigger: CTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTGGC...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAGAGTAGTCCAACAGTaGAGAGGCAGAGAACCTTCT +
Preference number: 2 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRRVVQQ*RGREPS
Trigger: AGAAGGTTCTCTGCCTCTCCACTGTTGGACTACTCT...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR TCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAACTAATTCTGCACGGTaGTCCTCTTTAGAGGCAGAA +
Preference number: 2 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRTNSAR*SSLEAE
Trigger: TTCTGCCTCTAAAGAGGATCACCGTGCAGAATTAGT...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR GCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAAAGAAATGCTCACATATaGAAGCATACCCTGTCTTCC +
Preference number: 2 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKRNAHI*KHTLSS
Trigger: GGAAGACAGGGTATGCTTGCATATGTGAGCATTTCT...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CAA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAGTGGGGGTGGCCTGCTaGAGCTCATCCAGTGCTTGG +
Preference number: 3 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVVGVAC*SSSSAW
Trigger: CCAAGCACTGGATGAGCTCAAGCAGGCCACCCCCAC...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR TCA 72 bp GAATGGCCAAAGACGCTGGAGTCTGCTGTTCAAACATaGGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGA +
Preference number: 3 (lower is better)
Translates to: EWPKTLESAVQT*GQQPQLSSLRR
Trigger: TCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAGACTCCAGCGTCTTTGGCCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR TCA 72 bp TCAGAGGCCAGCAACATAGTATCAGGGGAATCTGCTTaGCCAGCCAGAGGCCAGCAACATAGTAATGGGGGC +
Preference number: 3 (lower is better)
Translates to: SEASNIVSGESA*PARGQQHSNGG
Trigger: GCCCCCATTACTATGTTGCTGGCCTCTGGCTGGTCAAGCAGATTCCCCTGATACTATGTTGCTGGCCTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CCA 72 bp ACTGGTGATGGGTCCATGTTGAATGGCCAAAGACGCTaGAGTCTGCTGTTCAAACATGAGGGCAGCAGCCAC +
Preference number: 3 (lower is better)
Translates to: TGDGSMLNGQRR*SLLFKHEGSSH
Trigger: GTGGCTGCTGCCCTCATGTTTGAACAGCAGACTCCAGCGTCTTTGGCCATTCAACATGGACCCATCACCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR GCA 72 bp GGTGACTATACTGCATCCAGAAAAGCAAACCAGCCCTaGGCAGCAGAGGGATTCTGCCTGATGTTACTCAGC +
Preference number: 3 (lower is better)
Translates to: GDYTASRKANQP*AAEGFCLMLLS
Trigger: GCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTTTGCTTTTCTGGATGCAGTATAGTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR GCA 72 bp AGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATaGTCACATATGCAAGCATACCCTGTCTTCCTCCTC +
Preference number: 3 (lower is better)
Translates to: RAAATAVLTQKK*SHMQAYPVFLL
Trigger: GAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR TCA 72 bp AAGCTCGACACCTCACGTTCCATCAAGCTCCAGGCCTaGAAACTCCCTAAAACATCACTGGTGATGGGTCCA +
Preference number: 3 (lower is better)
Translates to: KLDTSRSIKLQA*KLPKTSLVMGP
Trigger: TGGACCCATCACCAGTGATGTTTTAGGGAGTTTTCAGGCCTGGAGCTTGATGGAACGTGAGGTGTCGAGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR TCA 72 bp AGCAACAGGCGTTCAGTTAACATCCATGCTTTCCACTaGACCCTTCAGAATCCTGGCCATTCAGAGGCCAGC +
Preference number: 3 (lower is better)
Translates to: SNRRSVNIHAFH*TLQNPGHSEAS
Trigger: GCTGGCCTCTGAATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCCTGTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR GCA 72 bp ATGGCCTTAGAGAGTGAGTCCAGACACGGCCAGAGCTaGTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGA +
Preference number: 3 (lower is better)
Translates to: MALESESRHGQS*FLNTPLQKGGG
Trigger: TCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTGGCCGTGTCTGGACTCACTCTCTAAGGCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CCA 72 bp TGCTTGGAGTACCATCCAGATAGAGTAGTCCAACAGTaGAGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTC +
Preference number: 3 (lower is better)
Translates to: CLEYHPDRVVQQ*RGREPSQLEKL
Trigger: GAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCTCCACTGTTGGACTACTCTATCTGGATGGTACTCCAAGCA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CCA 72 bp TGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTaGTGGGGTCGTTTGAAATTCTGGCCCAGATTAATT +
Preference number: 3 (lower is better)
Translates to: CQSSVHRHRLRA*WGRLKFWPRLI
Trigger: AATTAATCTGGGCCAGAATTTCAAACGACCCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR TCA 72 bp GACGGCAATGGGGTGACTTTCTCTGCTAACAGAAGGTaGCTATACTGCATCCAGAAAAGCAAACCAGCCCTG +
Preference number: 3 (lower is better)
Translates to: DGNGVTFSANRR*LYCIQKSKPAL
Trigger: CAGGGCTGGTTTGCTTTTCTGGATGCAGTATAGTCACCTTCTGTTAGCAGAGAAAGTCACCCCATTGCCGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CAA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGGTGGGGGTGGCCTGCTaGAGCTCATCCAGTGCTTGG +
Preference number: 3 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQVGVAC*SSSSAW
Trigger: CCAAGCACTGGATGAGCTCAAGCAGGCCACCCCCAC...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR TCA 72 bp CTCCTCGGGAAAAGTCAATTCCAGACGGCAATGGGGTaGCTTTCTCTGCTAACAGAAGGTGACTATACTGCA +
Preference number: 3 (lower is better)
Translates to: LLGKSQFQTAMG*LSLLTEGDYTA
Trigger: TGCAGTATAGTCACCTTCTGTTAGCAGAGAAAGTCACCCCATTGCCGTCTGGAATTGACTTTTCCCGAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR-3UTR CAA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGGAGGAGGAAGGCGTCTaGTATGTGGATCCACAGCAA +
Preference number: 3 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQEEEGV*YVDPQQ
Trigger: TTGCTGTGGATCCACATACAAGACGCCTTCCTCCTC...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGCAGCCTTCCCAGCAGTaGGCTGCCCAGCCGGCCACA +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGQPSQQ*AAQPAT
Trigger: TGTGGCCGGCTGGGCAGCTCACTGCTGGGAAGGCTG...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTCTTCCTGAGGAGCGCTaGCACAGCATCCGGACGGCT +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSLPEER*HSIRTA
Trigger: AGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAG...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGGGAGGTGTTGCTCTTaGGTCCCTGGGCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGGRCCS*VPGPAP
Trigger: AGGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGTTCCTGCTGAGGGCCTaGAGGAGGGCTTCTGCACCC +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGFLLRA*RRASAP
Trigger: GGGTGCAGAAGCCCTCCTGCAGGCCCTCAGCAGGAA...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGCAGGCGGGATGGAATaGAAGTGCTCGCGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSAGGME*KCSRRL
Trigger: CAGCCTCCGCGAGCACTTCCATTCCATCCCGCCTGC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTTGTGGCTCAGCCTTCTaGAGCAGGGCTGCTTCGCTG +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSCGSAF*SRAASL
Trigger: CAGCGAAGCAGCCCTGCTGCAGAAGGCTGAGCCACA...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGTGGAGAGCCGGCTTTaGAGGAGTCCAGGTCCCAGA +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSVESRL*RSPGPR
Trigger: TCTGGGACCTGGACTCCTCCAAAGCCGGCTCTCCAC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTTTGCTCTTGAGTCCCTaGGCCAGCACCTCGGCTCCA +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSLLLSP*ASTSAP
Trigger: TGGAGCCGAGGTGCTGGCCCAGGGACTCAAGAGCAA...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGTCATCAGAGTCAACCTaGGCTGCCTGGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGSSEST*AAWSCW
Trigger: CCAGCAGCTCCAGGCAGCTCAGGTTGACTCTGATGA...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTCTTCGCTGCCCTTCTTaGCTCTGGAGCCCTGGATAC +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSLRCPS*LWSPGY
Trigger: GTATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAG...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGTGGCACTGTTCCTGCTaGGGGCCTGCAGGAGGGCTT +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKWHCSC*GPAGGL
Trigger: AAGCCCTCCTGCAGGCCCTCAGCAGGAACAGTGCCA...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGCAAGGCCCCGGCTGTaGCCACTTCAGTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAARPRL*PLQSAA
Trigger: AGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGC...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGCTCTTGCCACTGCCTaGTTCGCCCACCACCAGTAT +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSALATA*FAHHQY
Trigger: ATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGCCAACAGGTCCCGATaGTGCTGGGACAACAGACCT +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSANRSR*CWDNRP
Trigger: AGGTCTGTTGTCCCAGCAGCATCGGGACCTGTTGGC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTCAGTACAAAGGCCAGTaGAGCACACTCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSQYKGQ*STLCRA
Trigger: GGCCCTGCAGAGTGTGCTGCACTGGCCTTTGTACTG...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTTCTCCTCACAATGGCTaGCCGGTGACTCTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSSPHNG*PVTLQV
Trigger: GACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGA...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGTCCGTGCTGGTTGTTaGGAAGCCCCTGTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSVRAGC*EAPVLQ
Trigger: CTGCAGAACAGGGGCTTCCCAACAACCAGCACGGAC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCCGACGGACAGCCTCCTaGGCCAACTGCTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASRRTAS*ANCSSC
Trigger: GCAGGAGGAGCAGTTGGCCCAGGAGGCTGTCCGTCG...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTTTGCTCTTGAGTCCCTaGGCCAGCACCTCGGCTCCA +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSLLLSP*ASTSAP
Trigger: TGGAGCCGAGGTGCTGGCCCAGGGACTCAAGAGCAA...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGACTTCAGCCAGGGCTTaGGTGCCCTTATCACCCACG +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGTSARA*VPLSPT
Trigger: CGTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGT...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CAA 72 bp TCCTCCATCTTCCTCCCACGGGGCAACCAGAGAGGATaGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTT +
Preference number: 4 (lower is better)
Translates to: SSIFLPRGNQRG*CHPHAVRAFPL
Trigger: AAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTGCCCCGTGGGAGGAAGATGGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATCTTCCTGAGGAGCGCTaGCACAGCATCCGGACGGCT +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNLPEER*HSIRTA
Trigger: AGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAG...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTTCATCAGAGTCAACCTaGGCTGCCTGGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSSSEST*AAWSCW
Trigger: CCAGCAGCTCCAGGCAGCTCAGGTTGACTCTGATGA...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGGTAGTTCCCTGACGTaGTGTAGAAGGAAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGGSSLT*CRRKAA
Trigger: GGCTGCCTTCCTTCTACAGCACGTCAGGGAACTACC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTGCAGAAGAGTGCTCTTaGCACTGCCTGCTTCGCCCA +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSAEECS*HCLLRP
Trigger: TGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGC...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTGAAGCTCCTCCCTGTTaGCCACAGCAGGTGCAAACG +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSEAPPC*PQQVQT
Trigger: CGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTC...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCTTCTGCAGCAGGGCTaGTTCGCTGCCCTTCTTGAC +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSLLQQG*FAALLD
Trigger: GTCAAGAAGGGCAGCGAAGCAGCCCTGCTGCAGAAG...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGCAGTGCAGCACACTCTaGAGGGCCCACTCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGQCSTL*RAHSAK
Trigger: TTTTGCAGAGTGGGCCCTGCAGAGTGTGCTGCACTG...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCTGCAGGAGGGCTTCTaGACCCCGGTAGGTGATGCC +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVLQEGF*TPVGDA
Trigger: GGCATCACCTACCGGGGTGCAGAAGCCCTCCTGCAG...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGCTGCAGGAGGGCTTCTaGACCCCGGTAGGTGATGCC +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMLQEGF*TPVGDA
Trigger: GGCATCACCTACCGGGGTGCAGAAGCCCTCCTGCAG...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGGTGGCTTGGATCAGCTaGATGAGGCGGTCTGCCACC +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKVAWIS*MRRSAT
Trigger: GGTGGCAGACCGCCTCATCCAGCTGATCCAAGCCAC...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTGTCCGTGCTGGTTGTTaGGAAGCCCCTGTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSVRAGC*EAPVLQ
Trigger: CTGCAGAACAGGGGCTTCCCAACAACCAGCACGGAC...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGACACATAGCAGCTCATaGCCAGGCCCCGGAGAGCCA +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKTHSSS*PGPGEP
Trigger: TGGCTCTCCGGGGCCTGGCCATGAGCTGCTATGTGT...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCGCAGGCGGGATGGAATaGAAGTGCTCGCGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASAGGME*KCSRRL
Trigger: CAGCCTCCGCGAGCACTTCCATTCCATCCCGCCTGC...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTACAATGGCTGGCCGGTaGCTCTGCAGGTCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQATMAGR*LCRSLV
Trigger: AACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGT...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCCTTCCTGAGGAGCGCTaGCACAGCATCCGGACGGCT +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSLPEER*HSIRTA
Trigger: AGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAG...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTCAAACCATGCAGGGCTaGGGTGGCTTGGATCAGCTG +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAQTMQG*GGLDQL
Trigger: CAGCTGATCCAAGCCACCTCAGCCCTGCATGGTTTG...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGTCATCAGAGTCAACCTaGGCTGCCTGGAGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKSSEST*AAWSCW
Trigger: CCAGCAGCTCCAGGCAGCTCAGGTTGACTCTGATGA...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTCTTCGCTGCCCTTCTTaGCTCTGGAGCCCTGGATAC +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQALRCPS*LWSPGY
Trigger: GTATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAG...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGCGGGCACCTCGGTCTaGGATATTGTTATCTCGCAA +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGAGTSV*DIVISQ
Trigger: TTGCGAGATAACAATATCTCAGACCGAGGTGCCCGC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATCCAGCGGCTGTGATGTaGTTGTTCCCCACCCTCAGG +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNPAAVM*LFPTLR
Trigger: CCTGAGGGTGGGGAACAATCACATCACAGCCGCTGG...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCGGGAGGTGTTGCTCTTaGGTCCCTGGGCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSGRCCS*VPGPAP
Trigger: AGGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCC...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCTGGCACTGTTCCTGCTaGGGGCCTGCAGGAGGGCTT +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSWHCSC*GPAGGL
Trigger: AAGCCCTCCTGCAGGCCCTCAGCAGGAACAGTGCCA...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGTGCCCACTTCAGTCTaGAGCTCCAAGATGTTCTCC +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSVPTSV*SSKMFS
Trigger: GGAGAACATCTTGGAGCTGCAGACTGAAGTGGGCAC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGCAAGGCCCCGGCTGTaGCCACTTCAGTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTARPRL*PLQSAA
Trigger: AGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCGAGTGCTCTTGCCACTaGCTGCTTCGCCCACCACCA +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASECSCH*LLRPPP
Trigger: TGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTC...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGAAGGCTGCTGTGATTTaGAGGTTGTGTGGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGKAAVI*RLCGSA
Trigger: GGCTGAGCCACACAACCTGCAAATCACAGCAGCCTT...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTGCAAATACAGAGCTGTaGAGACCCCAAGGCACGGTC +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSANTEL*RPQGTV
Trigger: GACCGTGCCTTGGGGTCTGCACAGCTCTGTATTTGC...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGGGCTTCGGCACCCATaGTGCCAATGTTGTTTCCTA +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSGLRHP*CQCCFL
Trigger: TAGGAAACAACATTGGCAGCATGGGTGCCGAAGCCC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGGGCTTCGGCACCCATaGTGCCAATGTTGTTTCCTA +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGGLRHP*CQCCFL
Trigger: TAGGAAACAACATTGGCAGCATGGGTGCCGAAGCCC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCTTCCTGCTGAGGGCCTaGAGGAGGGCTTCTGCACCC +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTFLLRA*RRASAP
Trigger: GGGTGCAGAAGCCCTCCTGCAGGCCCTCAGCAGGAA...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCCCTCCAGGCCCAGGATaGCAGGGCTCTTCTGCAAGG +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTPPGPG*QGSSAR
Trigger: CCTTGCAGAAGAGCCCTGCCATCCTGGGCCTGGAGG...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGAGGGCTGAGGTGGCTTaGATCAGCTGGATGAGGCGG +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVRAEVA*ISWMRR
Trigger: CCGCCTCATCCAGCTGATCCAAGCCACCTCAGCCCT...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGTTCCCGGTGGCATCTaGACACCATCCAAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSVPGGI*TPSKRR
Trigger: TCTTCTCTTGGATGGTGTCCAGATGCCACCGGGAAC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGATTTGCAGGTTGTGTaGCTCAGCCTTCTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGDLQVV*LSLLQQ
Trigger: CTGCTGCAGAAGGCTGAGCCACACAACCTGCAAATC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGCAGGCGGGATGGAATaGAAGTGCTCGCGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTAGGME*KCSRRL
Trigger: CAGCCTCCGCGAGCACTTCCATTCCATCCCGCCTGC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGTGTGTGCAAGGAGCTTaGCCATGGAGCAGGCGCACG +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMCVQGA*PWSRRT
Trigger: CGTGCGCCTGCTCCATGGCCAAGCTCCTTGCACACA...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCACAATGGCTGGCCGGTaGCTCTGCAGGTCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASTMAGR*LCRSLV
Trigger: AACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGT...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTACCCATCGTAAGTACTaGGGAAGCGAGACTGAGTCA +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSTHRKY*GSETES
Trigger: TGACTCAGTCTCGCTTCCTCAGTACTTACGATGGGT...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTGGGAGGTGTTGCTCTTaGGTCCCTGGGCCAGCACCT +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIGRCCS*VPGPAP
Trigger: AGGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCC...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGCACCCCGGTAGGTaGTGCCATTGTTGGACAGTT +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKLHPGR*CHCWTV
Trigger: AACTGTCCAACAATGGCATCACCTACCGGGGTGCAG...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTCTGCACCCCGGTAGGTaGTGCCATTGTTGGACAGTT +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQALHPGR*CHCWTV
Trigger: AACTGTCCAACAATGGCATCACCTACCGGGGTGCAG...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGGCTCTTGCCACTGCCTaGTTCGCCCACCACCAGTAT +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVALATA*FAHHQY
Trigger: ATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGC...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGGCAGAAGAGTGCTCTTaGCACTGCCTGCTTCGCCCA +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMAEECS*HCLLRP
Trigger: TGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGC...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGTTGCCCACAGCAGGTaGAAACGCTGCAGAAGAGTG +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAVAHSR*KRCRRV
Trigger: CACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAAC...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGGTTGCCCACAGCAGGTaGAAACGCTGCAGAAGAGTG +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKVAHSR*KRCRRV
Trigger: CACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAAC...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGGAAGCTCCTCCCTGTTaGCCACAGCAGGTGCAAACG +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMEAPPC*PQQVQT
Trigger: CGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTC...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATTCAGGCCAGCAGCAGTaGTCAAAGAGCAGCGTCCTC +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNSGQQQ*SKSSVL
Trigger: GAGGACGCTGCTCTTTGAGCACTGCTGCTGGCCTGA...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGAGAAGCCCTTCAGTTaGAACTCTGTGCGAACGAAC +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSEKPFS*NSVRTN
Trigger: GTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTCTC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGCACTGGAAGGTAATGTaGAGGAACTCCAGGGGCGCC +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMHWKVM*RNSRGA
Trigger: GGCGCCCCTGGAGTTCCTGCACATTACCTTCCAGTG...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCTTCTGCAGCAGGGCTaGTTCGCTGCCCTTCTTGAC +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVLLQQG*FAALLD
Trigger: GTCAAGAAGGGCAGCGAAGCAGCCCTGCTGCAGAAG...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCTGTGGCTCAGCCTTCTaGAGCAGGGCTGCTTCGCTG +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTCGSAF*SRAASL
Trigger: CAGCGAAGCAGCCCTGCTGCAGAAGGCTGAGCCACA...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCGCCAACAGGTCCCGATaGTGCTGGGACAACAGACCT +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASANRSR*CWDNRP
Trigger: AGGTCTGTTGTCCCAGCAGCATCGGGACCTGTTGGC...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGCTGCAGGGCCCACTCTaGAAAATGTCAACTTCAGGT +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGLQGPL*KMSTSG
Trigger: ACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAG...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGCAAATACAGAGCTGTaGAGACCCCAAGGCACGGTC +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAANTEL*RPQGTV
Trigger: GACCGTGCCTTGGGGTCTGCACAGCTCTGTATTTGC...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTAGAGTCTCCTCACAATaGCTGGCCGGTGACTCTGCA +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQARVSSQ*LAGDSA
Trigger: TGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCT...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTCCTCCAGGCCCAGGATaGCAGGGCTCTTCTGCAAGG +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIPPGPG*QGSSAR
Trigger: CCTTGCAGAAGAGCCCTGCCATCCTGGGCCTGGAGG...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGTGGCTTGGATCAGCTaGATGAGGCGGTCTGCCACC +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTVAWIS*MRRSAT
Trigger: GGTGGCAGACCGCCTCATCCAGCTGATCCAAGCCAC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCAGGGCTGAGGTGGCTTaGATCAGCTGGATGAGGCGG +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTRAEVA*ISWMRR
Trigger: CCGCCTCATCCAGCTGATCCAAGCCACCTCAGCCCT...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCGTGGAGAGCCGGCTTTaGAGGAGTCCAGGTCCCAGA +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSVESRL*RSPGPR
Trigger: TCTGGGACCTGGACTCCTCCAAAGCCGGCTCTCCAC...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCCCTGGATACACAGGTTaGGCAGCAGCCTTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASPGYTG*AAAFPA
Trigger: TGCTGGGAAGGCTGCTGCCCAACCTGTGTATCCAGG...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTGATTTGCAGGTTGTGTaGCTCAGCCTTCTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSDLQVV*LSLLQQ
Trigger: CTGCTGCAGAAGGCTGAGCCACACAACCTGCAAATC...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGCTGAGGAAGCGAGACTaGGTCAACACCATGGTCCTC +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMLRKRD*VNTMVL
Trigger: GAGGACCATGGTGTTGACTCAGTCTCGCTTCCTCAG...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATCTGGAGCTGCTGGGCTaGGAACACATAGCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNLELLG*EHIAAH
Trigger: ATGAGCTGCTATGTGTTCTCAGCCCAGCAGCTCCAG...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCTGGAGCTGCTGGGCTaGGAACACATAGCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVLELLG*EHIAAH
Trigger: ATGAGCTGCTATGTGTTCTCAGCCCAGCAGCTCCAG...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCCTGGAGCTGCTGGGCTaGGAACACATAGCAGCTCAT +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASLELLG*EHIAAH
Trigger: ATGAGCTGCTATGTGTTCTCAGCCCAGCAGCTCCAG...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCCTTCGCTGCCCTTCTTaGCTCTGGAGCCCTGGATAC +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSLRCPS*LWSPGY
Trigger: GTATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAG...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTACCAGCGGCTGTGATGTaGTTGTTCCCCACCCTCAGG +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVPAAVM*LFPTLR
Trigger: CCTGAGGGTGGGGAACAATCACATCACAGCCGCTGG...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCTTGGCCTGTGCCTCCTaGACAGCTTCGAGGAGCTTC +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTLACAS*TASRSF
Trigger: GAAGCTCCTCGAAGCTGTGCAGGAGGCACAGGCCAA...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAGAGTGCTCTTGCCACTaGCTGCTTCGCCCACCACCA +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVECSCH*LLRPPP
Trigger: TGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTC...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATGTTGCCCACAGCAGGTaGAAACGCTGCAGAAGAGTG +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNVAHSR*KRCRRV
Trigger: CACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAAC...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTGAGAAGCCCTTCAGTTaGAACTCTGTGCGAACGAAC +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSEKPFS*NSVRTN
Trigger: GTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTCTC...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGAAGGCTGCTGTGATTTaGAGGTTGTGTGGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKKAAVI*RLCGSA
Trigger: GGCTGAGCCACACAACCTGCAAATCACAGCAGCCTT...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGCCAACAGGTCCCGATaGTGCTGGGACAACAGACCT +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTANRSR*CWDNRP
Trigger: AGGTCTGTTGTCCCAGCAGCATCGGGACCTGTTGGC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTGCAGCACACTCTaGAGGGCCCACTCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVQCSTL*RAHSAK
Trigger: TTTTGCAGAGTGGGCCCTGCAGAGTGTGCTGCACTG...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGGCAAATACAGAGCTGTaGAGACCCCAAGGCACGGTC +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMANTEL*RPQGTV
Trigger: GACCGTGCCTTGGGGTCTGCACAGCTCTGTATTTGC...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGTGGCTCCTCTGTGCCTaGAACTCTTCCTGTGAGCAC +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVWLLCA*NSSCEH
Trigger: GTGCTCACAGGAAGAGTTCCAGGCACAGAGGAGCCA...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTAGCAGTGCCACCAGCTaGCTCCTCTGTGCCTGGAAC +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAISSATS*LLCAWN
Trigger: GTTCCAGGCACAGAGGAGCCAGCTGGTGGCACTGCT...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGCAGGTCTCTGGTTaGATGAAGGGAGTGAGTGTC +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKLQVSG*MKGVSV
Trigger: GACACTCACTCCCTTCATCCAACCAGAGACCTGCAG...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGAGAGTCTCCTCACAATaGCTGGCCGGTGACTCTGCA +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMRVSSQ*LAGDSA
Trigger: TGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCT...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTTTGCCAGCTCCAGCATaGCTTCTACATGGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSLPAPA*LLHGCR
Trigger: TCTACAACCATGTAGAAGCCATGCTGGAGCTGGCAA...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTAGGACACGGTCAGGATaGTCAAGAAGGAACTGGAAG +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSRTRSG*SRRNWK
Trigger: CTTCCAGTTCCTTCTTGACCATCCTGACCGTGTCCT...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGAGCAGAAGTTCCCGGTaGCATCTGGACACCATCCAA +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKSRSSR*HLDTIQ
Trigger: TTGGATGGTGTCCAGATGCCACCGGGAACTTCTGCT...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAGTGGAGAGCCGGCTTTaGAGGAGTCCAGGTCCCAGA +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVVESRL*RSPGPR
Trigger: TCTGGGACCTGGACTCCTCCAAAGCCGGCTCTCCAC...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCCCTGGATACACAGGTTaGGCAGCAGCCTTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTPGYTG*AAAFPA
Trigger: TGCTGGGAAGGCTGCTGCCCAACCTGTGTATCCAGG...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCACTTCAGCCAGGGCTTaGGTGCCCTTATCACCCACG +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSTSARA*VPLSPT
Trigger: CGTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGT...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
3UTR CAA 72 bp CACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTaGTCCCCTGCAAGCCTCCAAGCCCCAACTCCATGT +
Preference number: 4 (lower is better)
Translates to: HRKTLLRKKGLV*SPASLQAPTPC
Trigger: ACATGGAGTTGGGGCTTGGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCCAGCGGCTGTGATGTaGTTGTTCCCCACCCTCAGG +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSPAAVM*LFPTLR
Trigger: CCTGAGGGTGGGGAACAATCACATCACAGCCGCTGG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCCTGCACCCCGGTAGGTaGTGCCATTGTTGGACAGTT +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTLHPGR*CHCWTV
Trigger: AACTGTCCAACAATGGCATCACCTACCGGGGTGCAG...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGGTAGTTCCCTGACGTaGTGTAGAAGGAAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTGSSLT*CRRKAA
Trigger: GGCTGCCTTCCTTCTACAGCACGTCAGGGAACTACC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGGTGCCCACTTCAGTCTaGAGCTCCAAGATGTTCTCC +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVVPTSV*SSKMFS
Trigger: GGAGAACATCTTGGAGCTGCAGACTGAAGTGGGCAC...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTGCTCTTGCCACTGCCTaGTTCGCCCACCACCAGTAT +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIALATA*FAHHQY
Trigger: ATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGC...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTGAGTGCTCTTGCCACTaGCTGCTTCGCCCACCACCA +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSECSCH*LLRPPP
Trigger: TGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTC...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCAACGCTGCAGAAGAGTaGTCTTGCCACTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASNAAEE*SCHCLL
Trigger: AAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTT...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCGGTTTGGCCACGCATTaGAACTGTCGGCAGCTGAAT +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASGLATH*NCRQLN
Trigger: ATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACC...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTCACTGGAAGGTAATGTaGAGGAACTCCAGGGGCGCC +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIHWKVM*RNSRGA
Trigger: GGCGCCCCTGGAGTTCCTGCACATTACCTTCCAGTG...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCCCACAGCTGAAAAGGTaGTTGAGAGAGGCCACCGAT +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASPQLKR*LREATD
Trigger: ATCGGTGGCCTCTCTCAAGCACCTTTTCAGCTGTGG...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCCACAGCTGAAAAGGTaGTTGAGAGAGGCCACCGAT +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVPQLKR*LREATD
Trigger: ATCGGTGGCCTCTCTCAAGCACCTTTTCAGCTGTGG...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTGTGGCTCAGCCTTCTaGAGCAGGGCTGCTTCGCTG +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSCGSAF*SRAASL
Trigger: CAGCGAAGCAGCCCTGCTGCAGAAGGCTGAGCCACA...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGCAGGGCCCACTCTaGAAAATGTCAACTTCAGGT +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKLQGPL*KMSTSG
Trigger: ACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAG...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCGGCCGCTGGAGATGTTaGAGTACAAAGGCCAGTGCA +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSGRWRC*STKASA
Trigger: TGCACTGGCCTTTGTACTGCAACATCTCCAGCGGCC...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGGGGCTTCGGCACCCATaGTGCCAATGTTGTTTCCTA +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVGLRHP*CQCCFL
Trigger: TAGGAAACAACATTGGCAGCATGGGTGCCGAAGCCC...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTAGCAGTGCCACCAGCTaGCTCCTCTGTGCCTGGAAC +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSSSATS*LLCAWN
Trigger: GTTCCAGGCACAGAGGAGCCAGCTGGTGGCACTGCT...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCCTCATAGTCCTCCCTaGAGAGCACATCCCAAGACA +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVPHSPP*RAHPKT
Trigger: TGTCTTGGGATGTGCTCTCCAGGGAGGACTATGAGG...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATCCTCATAGTCCTCCCTaGAGAGCACATCCCAAGACA +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNPHSPP*RAHPKT
Trigger: TGTCTTGGGATGTGCTCTCCAGGGAGGACTATGAGG...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCCAAAGGTATGACTGTTaGCCTGTGCCTCCTGCACAG +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASQRYDC*PVPPAQ
Trigger: CTGTGCAGGAGGCACAGGCCAACAGTCATACCTTTG...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTAGACGACGTGAAGATTaGCAGCCTGATCTCCTCACA +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQARRRED*QPDLLT
Trigger: TGTGAGGAGATCAGGCTGCCAATCTTCACGTCGTCT...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTAGGACACGGTCAGGATaGTCAAGAAGGAACTGGAAG +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQARTRSG*SRRNWK
Trigger: CTTCCAGTTCCTTCTTGACCATCCTGACCGTGTCCT...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTTTGAAGAGCAGAGTCTaGACTGACGTGGGGTCAATT +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSLKSRV*TDVGSI
Trigger: AATTGACCCCACGTCAGTCCAGACTCTGCTCTTCAA...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTTTTCTCAGGTACAGTTaGATGCCCTCTTCAGAGAAG +
Preference number: 4 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSFLRYS*MPSSEK
Trigger: CTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAA...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATAGCAGAAGTTCCCGGTaGCATCTGGACACCATCCAA +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNSRSSR*HLDTIQ
Trigger: TTGGATGGTGTCCAGATGCCACCGGGAACTTCTGCT...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTCCTGGATACACAGGTTaGGCAGCAGCCTTCCCAGCA +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIPGYTG*AAAFPA
Trigger: TGCTGGGAAGGCTGCTGCCCAACCTGTGTATCCAGG...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGGATTTGCAGGTTGTGTaGCTCAGCCTTCTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVDLQVV*LSLLQQ
Trigger: CTGCTGCAGAAGGCTGAGCCACACAACCTGCAAATC...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGAGAGTCTGGCGTCCCTaGAGCTCAGTGTTTGGATTT +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKRVWRP*SSVFGF
Trigger: AAATCCAAACACTGAGCTCCAGGGACGCCAGACTCT...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCACCCATCGTAAGTACTaGGGAAGCGAGACTGAGTCA +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASTHRKY*GSETES
Trigger: TGACTCAGTCTCGCTTCCTCAGTACTTACGATGGGT...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCAAACCATGCAGGGCTaGGGTGGCTTGGATCAGCTG +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSQTMQG*GGLDQL
Trigger: CAGCTGATCCAAGCCACCTCAGCCCTGCATGGTTTG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAGCAAGGCCCCGGCTGTaGCCACTTCAGTCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGARPRL*PLQSAA
Trigger: AGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGC...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGGTTTGGCCACGCATTaGAACTGTCGGCAGCTGAAT +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTGLATH*NCRQLN
Trigger: ATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGTCAGGTACAGTTGGATaGCCTCTTCAGAGAAGCCCT +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVSGTVG*PLQRSP
Trigger: AGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGA...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCTGCAGCAGGAAATGCTaGAGGATCAGGAGGTACATG +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASCSRKC*RIRRYM
Trigger: CATGTACCTCCTGATCCTGCAGCATTTCCTGCTGCA...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCAGTACAAAGGCCAGTaGAGCACACTCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSQYKGQ*STLCRA
Trigger: GGCCCTGCAGAGTGTGCTGCACTGGCCTTTGTACTG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTGGCCGCTGGAGATGTTaGAGTACAAAGGCCAGTGCA +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIGRWRC*STKASA
Trigger: TGCACTGGCCTTTGTACTGCAACATCTCCAGCGGCC...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTAAGAGAGCTAGTTTCTaGAGCTGCTCACAGCGAAGA +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAKRASF*SCSQRR
Trigger: TCTTCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTT...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGAGGGACAAGAAGTTCTaGTTGTGTGCAAGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKRDKKF*LCARSL
Trigger: CAAGCTCCTTGCACACAAGCAGAACTTCTTGTCCCT...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGACTGCAGGAGGGCTTCTaGACCCCGGTAGGTGATGCC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGLQEGF*TPVGDA
Trigger: GGCATCACCTACCGGGGTGCAGAAGCCCTCCTGCAG...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCCAAAGGTATGACTGTTaGCCTGTGCCTCCTGCACAG +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSQRYDC*PVPPAQ
Trigger: CTGTGCAGGAGGCACAGGCCAACAGTCATACCTTTG...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGACTCTGCAGGTCTCTaGTTGGATGAAGGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTDSAGL*LDEGSE
Trigger: CTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAAGAGTCTCCTCACAATaGCTGGCCGGTGACTCTGCA +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVRVSSQ*LAGDSA
Trigger: TGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCT...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTTTGCCAGCTCCAGCATaGCTTCTACATGGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQALPAPA*LLHGCR
Trigger: TCTACAACCATGTAGAAGCCATGCTGGAGCTGGCAA...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGAGACGACGTGAAGATTaGCAGCCTGATCTCCTCACA +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMRRRED*QPDLLT
Trigger: TGTGAGGAGATCAGGCTGCCAATCTTCACGTCGTCT...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCATGAAGAGAAACTCCTaGAAGCTCCTCCCTGTTGCC +
Preference number: 4 (lower is better)
Translates to: TERPCSERRAWFCPLQASMKRNS*KLLPVA
Trigger: GGCAACAGGGAGGAGCTTCCAGGAGTTTCTCTTCAT...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATATGAAGAGAAACTCCTaGAAGCTCCTCCCTGTTGCC +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNMKRNS*KLLPVA
Trigger: GGCAACAGGGAGGAGCTTCCAGGAGTTTCTCTTCAT...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGTTCAGCAGGTTCCCCTaGAGAAGGTTGAAGAGCAGA +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMFSRFP*RRLKSR
Trigger: TCTGCTCTTCAACCTTCTCCAGGGGAACCTGCTGAA...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGTTCCCGGTGGCATCTaGACACCATCCAAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTVPGGI*TPSKRR
Trigger: TCTTCTCTTGGATGGTGTCCAGATGCCACCGGGAAC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCAGCAGAAGTTCCCGGTaGCATCTGGACACCATCCAA +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSSRSSR*HLDTIQ
Trigger: TTGGATGGTGTCCAGATGCCACCGGGAACTTCTGCT...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTAGCCACTTTAGGTTCTaGTGGTCGGCTACAACTTCA +
Preference number: 4 (lower is better)
Translates to: RQRTFSAGEARHLTFHQASHFRF*WSATTS
Trigger: TGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCT...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGCTGGAGCTCAGTGTTTaGATTTCCTCCAAAGAGAAT +
Preference number: 4 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGLELSV*ISSKEN
Trigger: ATTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAG...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGACAGCCTTCCCAGCAGTaGGCTGCCCAGCCGGCCACA +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRQPSQQ*AAQPAT
Trigger: TGTGGCCGGCTGGGCAGCTCACTGCTGGGAAGGCTG...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTGGTAGTTCCCTGACGTaGTGTAGAAGGAAGGCAGCC +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSGSSLT*CRRKAA
Trigger: GGCTGCCTTCCTTCTACAGCACGTCAGGGAACTACC...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAAACGCTGCAGAAGAGTaGTCTTGCCACTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVNAAEE*SCHCLL
Trigger: AAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTT...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTGGCTGGTCAGCACCTTaGAGGCATTCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSGWSAP*RHSSAG
Trigger: ACCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCC...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCTCAGGTACAGTTGGATaGCCTCTTCAGAGAAGCCCT +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSSGTVG*PLQRSP
Trigger: AGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGA...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCCTGCAGGGCCCACTCTaGAAAATGTCAACTTCAGGT +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSLQGPL*KMSTSG
Trigger: ACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAG...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGAAGAGAGCTAGTTTCTaGAGCTGCTCACAGCGAAGA +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVKRASF*SCSQRR
Trigger: TCTTCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTT...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCAGGACACGGTCAGGATaGTCAAGAAGGAACTGGAAG +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSRTRSG*SRRNWK
Trigger: CTTCCAGTTCCTTCTTGACCATCCTGACCGTGTCCT...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAAGGGCTGAGGTGGCTTaGATCAGCTGGATGAGGCGG +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGRAEVA*ISWMRR
Trigger: CCGCCTCATCCAGCTGATCCAAGCCACCTCAGCCCT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGAGCCACTTTAGGTTCTaGTGGTCGGCTACAACTTCA +
Preference number: 4 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVSHFRF*WSATTS
Trigger: TGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCT...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCCTTCGTCACAGATATaGTTTTCCTCTAGGCAGAGT +
Preference number: 4 (lower is better)
Translates to: RGREPSQLEKLDTSRSIKPSSQI*FSSRQS
Trigger: ACTCTGCCTAGAGGAAAACCATATCTGTGACGAAGG...CTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCAGAGTCTGGCGTCCCTaGAGCTCAGTGTTTGGATTT +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTRVWRP*SSVFGF
Trigger: AAATCCAAACACTGAGCTCCAGGGACGCCAGACTCT...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAACAATGGCTGGCCGGTaGCTCTGCAGGTCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGTMAGR*LCRSLV
Trigger: AACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTTTAGATATGAACTTCTaGCACTCAGCAGCTAGGATA +
Preference number: 4 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSLDMNF*HSAARI
Trigger: TATCCTAGCTGCTGAGTGTCAGAAGTTCATATCTAA...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054324.15
CDS-3UTR TCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTGCGGGCACCTCGGTCTaGGATATTGTTATCTCGCAA +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSAGTSV*DIVISQ
Trigger: TTGCGAGATAACAATATCTCAGACCGAGGTGCCCGC...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTATCAAGCAGCCTTCTTaGCCTCTGAGACGACGTGAA +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIIKQPS*PLRRRE
Trigger: TTCACGTCGTCTCAGAGGGCAAGAAGGCTGCTTGAT...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAATCAAGCAGCCTTCTTaGCCTCTGAGACGACGTGAA +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVIKQPS*PLRRRE
Trigger: TTCACGTCGTCTCAGAGGGCAAGAAGGCTGCTTGAT...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGATCAGGCCAGCAGCAGTaGTCAAAGAGCAGCGTCCTC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGSGQQQ*SKSSVL
Trigger: GAGGACGCTGCTCTTTGAGCACTGCTGCTGGCCTGA...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTATGCAGCAGGAAATGCTaGAGGATCAGGAGGTACATG +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVCSRKC*RIRRYM
Trigger: CATGTACCTCCTGATCCTGCAGCATTTCCTGCTGCA...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGACTTCTGCAGCAGGGCTaGTTCGCTGCCCTTCTTGAC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGLLQQG*FAALLD
Trigger: GTCAAGAAGGGCAGCGAAGCAGCCCTGCTGCAGAAG...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGACAGTACAAAGGCCAGTaGAGCACACTCTGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGQYKGQ*STLCRA
Trigger: GGCCCTGCAGAGTGTGCTGCACTGGCCTTTGTACTG...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCAAGAGAGCTAGTTTCTaGAGCTGCTCACAGCGAAGA +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTKRASF*SCSQRR
Trigger: TCTTCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTT...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATTCTCTTGAGTCCTTCTaGGAGAGAATATACCCCTTC +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNSLESF*ERIYPF
Trigger: GAAGGGGTATATTCTCTCGCAGAAGGACTCAAGAGA...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGTCTCTTGAGTCCTTCTaGGAGAGAATATACCCCTTC +
Preference number: 4 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMSLESF*ERIYPF
Trigger: GAAGGGGTATATTCTCTCGCAGAAGGACTCAAGAGA...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGTTCCTGCTGAGGGCCTaGAGGAGGGCTTCTGCACCC +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQFLLRA*RRASAP
Trigger: GGGTGCAGAAGCCCTCCTGCAGGCCCTCAGCAGGAA...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTGACTCTGCAGGTCTCTaGTTGGATGAAGGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSDSAGL*LDEGSE
Trigger: CTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTC...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGATCTCCTCACAATGGCTaGCCGGTGACTCTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGSPHNG*PVTLQV
Trigger: GACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGA...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTAGACGACGTGAAGATTaGCAGCCTGATCTCCTCACA +
Preference number: 4 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIRRRED*QPDLLT
Trigger: TGTGAGGAGATCAGGCTGCCAATCTTCACGTCGTCT...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATCTGTCGGCAGCTGAATaGGAAAATGAAGAGAAACTC +
Preference number: 4 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNLSAAE*ENEEKL
Trigger: GAGTTTCTCTTCATTTTCCCATTCAGCTGCCGACAG...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTGTTCCCGGTGGCATCTaGACACCATCCAAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSVPGGI*TPSKRR
Trigger: TCTTCTCTTGGATGGTGTCCAGATGCCACCGGGAAC...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAGTCCGTGCTGGTTGTTaGGAAGCCCCTGTTCTGCAG +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGVRAGC*EAPVLQ
Trigger: CTGCAGAACAGGGGCTTCCCAACAACCAGCACGGAC...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAACGACGGACAGCCTCCTaGGCCAACTGCTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKRRTAS*ANCSSC
Trigger: GCAGGAGGAGCAGTTGGCCCAGGAGGCTGTCCGTCG...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGACGACGGACAGCCTCCTaGGCCAACTGCTCCTCCTGC +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRRRTAS*ANCSSC
Trigger: GCAGGAGGAGCAGTTGGCCCAGGAGGCTGTCCGTCG...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCAGCCACTTTAGGTTCTaGTGGTCGGCTACAACTTCA +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSSHFRF*WSATTS
Trigger: TGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCT...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAATGGCACTGTTCCTGCTaGGGGCCTGCAGGAGGGCTT +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKWHCSC*GPAGGL
Trigger: AAGCCCTCCTGCAGGCCCTCAGCAGGAACAGTGCCA...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAGGCTGGTCAGCACCTTaGAGGCATTCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGGWSAP*RHSSAG
Trigger: ACCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCC...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTATTGCCAGCTCCAGCATaGCTTCTACATGGTTGTAGA +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVLPAPA*LLHGCR
Trigger: TCTACAACCATGTAGAAGCCATGCTGGAGCTGGCAA...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGACCTCCAGGCCCAGGATaGCAGGGCTCTTCTGCAAGG +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRPPGPG*QGSSAR
Trigger: CCTTGCAGAAGAGCCCTGCCATCCTGGGCCTGGAGG...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTATTGAAGAGCAGAGTCTaGACTGACGTGGGGTCAATT +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVLKSRV*TDVGSI
Trigger: AATTGACCCCACGTCAGTCCAGACTCTGCTCTTCAA...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTTCAGCAGGTTCCCCTaGAGAAGGTTGAAGAGCAGA +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSFSRFP*RRLKSR
Trigger: TCTGCTCTTCAACCTTCTCCAGGGGAACCTGCTGAA...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCTTTCTCAGGTACAGTTaGATGCCCTCTTCAGAGAAG +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSFLRYS*MPSSEK
Trigger: CTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAA...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGGTGGCTTGGATCAGCTaGATGAGGCGGTCTGCCACC +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQVAWIS*MRRSAT
Trigger: GGTGGCAGACCGCCTCATCCAGCTGATCCAAGCCAC...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGTGTGTGCAAGGAGCTTaGCCATGGAGCAGGCGCACG +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQCVQGA*PWSRRT
Trigger: CGTGCGCCTGCTCCATGGCCAAGCTCCTTGCACACA...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGCAAACCATGCAGGGCTaGGGTGGCTTGGATCAGCTG +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQQTMQG*GGLDQL
Trigger: CAGCTGATCCAAGCCACCTCAGCCCTGCATGGTTTG...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAGTGCCCACTTCAGTCTaGAGCTCCAAGATGTTCTCC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGVPTSV*SSKMFS
Trigger: GGAGAACATCTTGGAGCTGCAGACTGAAGTGGGCAC...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGGCAGAAGAGTGCTCTTaGCACTGCCTGCTTCGCCCA +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQAEECS*HCLLRP
Trigger: TGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGC...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAAACGCTGCAGAAGAGTaGTCTTGCCACTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGNAAEE*SCHCLL
Trigger: AAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGCACTGGAAGGTAATGTaGAGGAACTCCAGGGGCGCC +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQHWKVM*RNSRGA
Trigger: GGCGCCCCTGGAGTTCCTGCACATTACCTTCCAGTG...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGACCACAGCTGAAAAGGTaGTTGAGAGAGGCCACCGAT +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGPQLKR*LREATD
Trigger: ATCGGTGGCCTCTCTCAAGCACCTTTTCAGCTGTGG...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAAAGGCTGCTGTGATTTaGAGGTTGTGTGGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGKAAVI*RLCGSA
Trigger: GGCTGAGCCACACAACCTGCAAATCACAGCAGCCTT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAGCAGTGCCACCAGCTaGCTCCTCTGTGCCTGGAAC +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRSSATS*LLCAWN
Trigger: GTTCCAGGCACAGAGGAGCCAGCTGGTGGCACTGCT...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGACTGCAGGTCTCTGGTTaGATGAAGGGAGTGAGTGTC +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGLQVSG*MKGVSV
Trigger: GACACTCACTCCCTTCATCCAACCAGAGACCTGCAG...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAGACTCTGCAGGTCTCTaGTTGGATGAAGGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGDSAGL*LDEGSE
Trigger: CTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTC...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGTCTCCTCACAATGGCTaGCCGGTGACTCTGCAGGTC +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQSPHNG*PVTLQV
Trigger: GACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGA...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAACACATAGCAGCTCATaGCCAGGCCCCGGAGAGCCA +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRTHSSS*PGPGEP
Trigger: TGGCTCTCCGGGGCCTGGCCATGAGCTGCTATGTGT...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAATGTGTGCAAGGAGCTTaGCCATGGAGCAGGCGCACG +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKCVQGA*PWSRRT
Trigger: CGTGCGCCTGCTCCATGGCCAAGCTCCTTGCACACA...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGATTGCTCTTGAGTCCCTaGGCCAGCACCTCGGCTCCA +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRLLLSP*ASTSAP
Trigger: TGGAGCCGAGGTGCTGGCCCAGGGACTCAAGAGCAA...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCAAGTTGAATTTCTCTTaGGTCCTTCTGCGAGAGAAT +
Preference number: 4 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSKLNFS*VLLREN
Trigger: ATTCTCTCGCAGAAGGACTCAAGAGAAATTCAACTT...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCAAGTTGAATTTCTCTTaGGTCCTTCTGCGAGAGAAT +
Preference number: 4 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTKLNFS*VLLREN
Trigger: ATTCTCTCGCAGAAGGACTCAAGAGAAATTCAACTT...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGATTGGCCTGTGCCTCCTaGACAGCTTCGAGGAGCTTC +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRLACAS*TASRSF
Trigger: GAAGCTCCTCGAAGCTGTGCAGGAGGCACAGGCCAA...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAATCAGGCCAGCAGCAGTaGTCAAAGAGCAGCGTCCTC +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKSGQQQ*SKSSVL
Trigger: GAGGACGCTGCTCTTTGAGCACTGCTGCTGGCCTGA...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGCAGTGCAGCACACTCTaGAGGGCCCACTCTGCAAAA +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQQCSTL*RAHSAK
Trigger: TTTTGCAGAGTGGGCCCTGCAGAGTGTGCTGCACTG...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGTGGCTCCTCTGTGCCTaGAACTCTTCCTGTGAGCAC +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQWLLCA*NSSCEH
Trigger: GTGCTCACAGGAAGAGTTCCAGGCACAGAGGAGCCA...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCTGTCGGCAGCTGAATaGGAAAATGAAGAGAAACTC +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSLSAAE*ENEEKL
Trigger: GAGTTTCTCTTCATTTTCCCATTCAGCTGCCGACAG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTTTCTCAGGTACAGTTaGATGCCCTCTTCAGAGAAG +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSFLRYS*MPSSEK
Trigger: CTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAA...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAACTTCAGCCAGGGCTTaGGTGCCCTTATCACCCACG +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRTSARA*VPLSPT
Trigger: CGTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGT...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCCTTCGTCACAGATATaGTTTTCCTCTAGGCAGAGT +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSPSSQI*FSSRQS
Trigger: ACTCTGCCTAGAGGAAAACCATATCTGTGACGAAGG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTACTGGAGCTCAGTGTTTaGATTTCCTCCAAAGAGAAT +
Preference number: 4 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVLELSV*ISSKEN
Trigger: ATTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAG...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGGCGGGCACCTCGGTCTaGGATATTGTTATCTCGCAA +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQAGTSV*DIVISQ
Trigger: TTGCGAGATAACAATATCTCAGACCGAGGTGCCCGC...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAAGGCTGGTCAGCACCTTaGAGGCATTCTTCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKGWSAP*RHSSAG
Trigger: ACCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCC...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAGGCCGCTGGAGATGTTaGAGTACAAAGGCCAGTGCA +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRGRWRC*STKASA
Trigger: TGCACTGGCCTTTGTACTGCAACATCTCCAGCGGCC...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGCTGCAGGTCTCTGGTTaGATGAAGGGAGTGAGTGTC +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQLQVSG*MKGVSV
Trigger: GACACTCACTCCCTTCATCCAACCAGAGACCTGCAG...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCTGGAGCTCAGTGTTTaGATTTCCTCCAAAGAGAAT +
Preference number: 4 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSLELSV*ISSKEN
Trigger: ATTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGGAGAAGCCCTTCAGTTaGAACTCTGTGCGAACGAAC +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQEKPFS*NSVRTN
Trigger: GTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTCTC...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGTGCAGCAGGAAATGCTaGAGGATCAGGAGGTACATG +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQCSRKC*RIRRYM
Trigger: CATGTACCTCCTGATCCTGCAGCATTTCCTGCTGCA...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAACCTCATAGTCCTCCCTaGAGAGCACATCCCAAGACA +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKPHSPP*RAHPKT
Trigger: TGTCTTGGGATGTGCTCTCCAGGGAGGACTATGAGG...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGACAAAGGTATGACTGTTaGCCTGTGCCTCCTGCACAG +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRQRYDC*PVPPAQ
Trigger: CTGTGCAGGAGGCACAGGCCAACAGTCATACCTTTG...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR TCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAACTGGAACTCTTCCTGTaGGCACATGTCACAACAGCT +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKLELFL*AHVTTA
Trigger: AGCTGTTGTGACATGTGCTCACAGGAAGAGTTCCAG...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109634.3
CDS-3UTR GCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAAATCAAGCAGCCTTCTTaGCCTCTGAGACGACGTGAA +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKIKQPS*PLRRRE
Trigger: TTCACGTCGTCTCAGAGGGCAAGAAGGCTGCTTGAT...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGATCAGGTACAGTTGGATaGCCTCTTCAGAGAAGCCCT +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRSGTVG*PLQRSP
Trigger: AGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGA...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGAGGGACAAGAAGTTCTaGTTGTGTGCAAGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQRDKKF*LCARSL
Trigger: CAAGCTCCTTGCACACAAGCAGAACTTCTTGTCCCT...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAAATGAAGAGAAACTCCTaGAAGCTCCTCCCTGTTGCC +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKMKRNS*KLLPVA
Trigger: GGCAACAGGGAGGAGCTTCCAGGAGTTTCTCTTCAT...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGATTCAGCAGGTTCCCCTaGAGAAGGTTGAAGAGCAGA +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRFSRFP*RRLKSR
Trigger: TCTGCTCTTCAACCTTCTCCAGGGGAACCTGCTGAA...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAAAGAGTCTGGCGTCCCTaGAGCTCAGTGTTTGGATTT +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKRVWRP*SSVFGF
Trigger: AAATCCAAACACTGAGCTCCAGGGACGCCAGACTCT...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR GCA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAATCTCTTGAGTCCTTCTaGGAGAGAATATACCCCTTC +
Preference number: 4 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKSLESF*ERIYPF
Trigger: GAAGGGGTATATTCTCTCGCAGAAGGACTCAAGAGA...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CCA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGACTGTCGGCAGCTGAATaGGAAAATGAAGAGAAACTC +
Preference number: 4 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRLSAAE*ENEEKL
Trigger: GAGTTTCTCTTCATTTTCCCATTCAGCTGCCGACAG...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp AAGTGCTCGCGGAGGCTGTGGGCCAGACACGAGCGGGCACGTGCCTaGCGCTGGAGCAGTACCCTCTCGGAGACCTGGCATGCAGCCAAC +
Preference number: 5 (lower is better)
Translates to: KCSRRLWARHERARA*RWSSTLSETWHAAN
Trigger: GTTGGCTGCATGCCAGGTCTCCGAGAGGGTACTGCTCCAGCGTCAGGCACGTGCCCGCTCGTGTCTGGCCCACAGCCTCCGCGAGCACTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp ATGGAAGTGCTCGCGGAGGCTGTGGGCCAGACACGAGCGGGCACGTaGCTGACGCTGGAGCAGTACCCTCTCGGAGACCTGGCATGCAGC +
Preference number: 5 (lower is better)
Translates to: MEVLAEAVGQTRAGT*LTLEQYPLGDLACS
Trigger: GCTGCATGCCAGGTCTCCGAGAGGGTACTGCTCCAGCGTCAGGCACGTGCCCGCTCGTGTCTGGCCCACAGCCTCCGCGAGCACTTCCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp GCATGCATGCTCTTGGTCTCACCGGGCACGGCAGGCGGGATGGAATaGAAGTGCTCGCGGAGGCTGTGGGCCAGACACGAGCGGGCACGT +
Preference number: 5 (lower is better)
Translates to: ACMLLVSPGTAGGME*KCSRRLWARHERAR
Trigger: ACGTGCCCGCTCGTGTCTGGCCCACAGCCTCCGCGAGCACTTCCATTCCATCCCGCCTGCCGTGCCCGGTGAGACCAAGAGCATGCATGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp GAGGGTGGAGAGCCGGCTTTGGAGGAGTCCAGGTCCCAGACCGAGTaGGGAGGAGTCCGGAGGGGAGGCATGCAGCAGGAAATGCTGCAG +
Preference number: 5 (lower is better)
Translates to: EGGEPALEESRSQTE*GGVRRGGMQQEMLQ
Trigger: CTGCAGCATTTCCTGCTGCATGCCTCCCCTCCGGACTCCTCCCCACTCGGTCTGGGACCTGGACTCCTCCAAAGCCGGCTCTCCACCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp TCTGGAGCCCTGGATACACAGGTTGGGCAGCAGCCTTCCCAGCAGTaGGCTGCCCAGCCGGCCACAGCTGAAAAGGTGCTTGAGAGAGGC +
Preference number: 5 (lower is better)
Translates to: SGALDTQVGQQPSQQ*AAQPATAEKVLERG
Trigger: GCCTCTCTCAAGCACCTTTTCAGCTGTGGCCGGCTGGGCAGCTCACTGCTGGGAAGGCTGCTGCCCAACCTGTGTATCCAGGGCTCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp AGTCCAGGTCCCAGACCGAGTGGGGAGGAGTCCGGAGGGGAGGCATaGAGCAGGAAATGCTGCAGGATCAGGAGGTACATGTCCGTGCTG +
Preference number: 5 (lower is better)
Translates to: SPGPRPSGEESGGEA*SRKCCRIRRYMSVL
Trigger: CAGCACGGACATGTACCTCCTGATCCTGCAGCATTTCCTGCTGCATGCCTCCCCTCCGGACTCCTCCCCACTCGGTCTGGGACCTGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp TTCTGCAGCAGGGCTGCTTCGCTGCCCTTCTTGACTCTGGAGCCCTaGATACACAGGTTGGGCAGCAGCCTTCCCAGCAGTGAGCTGCCC +
Preference number: 5 (lower is better)
Translates to: FCSRAASLPFLTLEP*IHRLGSSLPSSELP
Trigger: GGGCAGCTCACTGCTGGGAAGGCTGCTGCCCAACCTGTGTATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAGCAGCCCTGCTGCAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp CACCATCCAAGAGAAGACAGGGAGGTGGCACAAACCATGCAGGGCTaGGGTGGCTTGGATCAGCTGGATGAGGCGGTCTGCCACCCCAGG +
Preference number: 5 (lower is better)
Translates to: HHPREDREVAQTMQG*GGLDQLDEAVCHPR
Trigger: CCTGGGGTGGCAGACCGCCTCATCCAGCTGATCCAAGCCACCTCAGCCCTGCATGGTTTGTGCCACCTCCCTGTCTTCTCTTGGATGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TGGGTATCAAAGAGGTCCTCCAGGCCCAGGATGGCAGGGCTCTTCTaGAAGGCCCCGGCTGTGCCCACTTCAGTCTGCAGCTCCAAGATG +
Preference number: 5 (lower is better)
Translates to: WVSKRSSRPRMAGLF*KAPAVPTSVCSSKM
Trigger: CATCTTGGAGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGCAGAAGAGCCCTGCCATCCTGGGCCTGGAGGACCTCTTTGATACCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp AGCTCCTCCCTGTTGCCCACAGCAGGTGCAAACGCTGCAGAAGAGTaGTCTTGCCACTGCCTGCTTCGCCCACCACCAGTATGGTGTCGG +
Preference number: 5 (lower is better)
Translates to: SSSLLPTAGANAAEE*SCHCLLRPPPVWCR
Trigger: CCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp GCAGCACACTCTGCAGGGCCCACTCTGCAAAATGTCAACTTCAGGTaGCCGATGTCCAAGCGACGGACAGCCTCCTGGGCCAACTGCTCC +
Preference number: 5 (lower is better)
Translates to: AAHSAGPTLQNVNFR*PMSKRRTASWANCS
Trigger: GGAGCAGTTGGCCCAGGAGGCTGTCCGTCGCTTGGACATCGGGCACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAGAGTGTGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTGGTGGAGAGCCGGCTTaGGAGGAGTCCAGGTCCCAG +
Preference number: 5 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSGGEPA*EESRSQ
Trigger: CTGGGACCTGGACTCCTCCAAAGCCGGCTCTCCACC...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp CCTGCTTCGCCCACCACCAGTATGGTGTCGGCATCTCTGTTCAGGTaGCCATGGGTATCAAAGAGGTCCTCCAGGCCCAGGATGGCAGGG +
Preference number: 5 (lower is better)
Translates to: PASPTTSMVSASLFR*PWVSKRSSRPRMAG
Trigger: CCCTGCCATCCTGGGCCTGGAGGACCTCTTTGATACCCATGGTCACCTGAACAGAGATGCCGACACCATACTGGTGGTGGGCGAAGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TCCCTGTTGCCCACAGCAGGTGCAAACGCTGCAGAAGAGTGCTCTTaGCACTGCCTGCTTCGCCCACCACCAGTATGGTGTCGGCATCTC +
Preference number: 5 (lower is better)
Translates to: SLLPTAGANAAEECS*HCLLRPPPVWCRHL
Trigger: GAGATGCCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp AACTCCTGGAAGCTCCTCCCTGTTGCCCACAGCAGGTGCAAACGCTaGAGAAGAGTGCTCTTGCCACTGCCTGCTTCGCCCACCACCAGT +
Preference number: 5 (lower is better)
Translates to: NSWKLLPVAHSRCKR*RRVLLPLPASPTTS
Trigger: ACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCCAGGAGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp AGACCGAGTGGGGAGGAGTCCGGAGGGGAGGCATGCAGCAGGAAATaGTGCAGGATCAGGAGGTACATGTCCGTGCTGGTTGTTGGGAAG +
Preference number: 5 (lower is better)
Translates to: RPSGEESGGEACSRK*CRIRRYMSVLVVGK
Trigger: CTTCCCAACAACCAGCACGGACATGTACCTCCTGATCCTGCAGCATTTCCTGCTGCATGCCTCCCCTCCGGACTCCTCCCCACTCGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp GCTTGGATCAGCTGGATGAGGCGGTCTGCCACCCCAGGTTCCCGGTaGTGCTTTCTCAGGTACAGTTGGATGCCCTCTTCAGAGAAGCCC +
Preference number: 5 (lower is better)
Translates to: AWISWMRRSATPGSR*CFLRYSWMPSSEKP
Trigger: GGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAAGCACCACCGGGAACCTGGGGTGGCAGACCGCCTCATCCAGCTGATCCAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTGGTGGAGAGCCGGCTTaGGAGGAGTCCAGGTCCCAG +
Preference number: 5 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSGGEPA*EESRSQ
Trigger: CTGGGACCTGGACTCCTCCAAAGCCGGCTCTCCACC...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp GAGAGTAGCCCTCGTAAGGCAGAGGCAGTGGAGCTGGTAGTTCCCTaGCGTGCTGTAGAAGGAAGGCAGCCAGTCCATTGGCCTTCACCG +
Preference number: 5 (lower is better)
Translates to: ESSPRKAEAVELVVP*RAVEGRQPVHWPSP
Trigger: CGGTGAAGGCCAATGGACTGGCTGCCTTCCTTCTACAGCACGTCAGGGAACTACCAGCTCCACTGCCTCTGCCTTACGAGGGCTACTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054324.15
CDS TCA 90 bp CTTCAGCAGGTTCCCCTGGAGAAGGTTGAAGAGCAGAGTCTGGACTaGCGTGGGGTCAATTGGAGAGCAGTGGCGCTCCCGGTCGGTGAA +
Preference number: 5 (lower is better)
Translates to: LQQVPLEKVEEQSLD*RGVNWRAVALPVGE
Trigger: TTCACCGACCGGGAGCGCCACTGCTCTCCAATTGACCCCACGTCAGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAACCTGCTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp GGTCCCGATGCTGCTGGGACAACAGACCTGCTAGGAAGGCTGCTGTaGTTTGCAGGTTGTGTGGCTCAGCCTTCTGCAGCAGGGCTGCTT +
Preference number: 5 (lower is better)
Translates to: GPDAAGTTDLLGRLL*FAGCVAQPSAAGLL
Trigger: AAGCAGCCCTGCTGCAGAAGGCTGAGCCACACAACCTGCAAATCACAGCAGCCTTCCTAGCAGGTCTGTTGTCCCAGCAGCATCGGGACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp CTCTTGAGTCCCTGGGCCAGCACCTCGGCTCCAGCGGCTGTGATGTaGTTGTTCCCCACCCTCAGGGACAAGAAGTTCTGCTTGTGTGCA +
Preference number: 5 (lower is better)
Translates to: LLSPWASTSAPAAVM*LFPTLRDKKFCLCA
Trigger: TGCACACAAGCAGAACTTCTTGTCCCTGAGGGTGGGGAACAATCACATCACAGCCGCTGGAGCCGAGGTGCTGGCCCAGGGACTCAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp ACTCAGCAGCCTCGTAAGGCAGAGGCAGTGGAGCTGGTAGTTCCCTaGCGTGCTGTAGAAGGAAGGCAGCCAGTCCATTGGCCTTCACCG +
Preference number: 5 (lower is better)
Translates to: TQQPRKAEAVELVVP*RAVEGRQPVHWPSP
Trigger: CGGTGAAGGCCAATGGACTGGCTGCCTTCCTTCTACAGCACGTCAGGGAACTACCAGCTCCACTGCCTCTGCCTTACGAGGCTGCTGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp CCTCCAGGCCCAGGATGGCAGGGCTCTTCTGCAAGGCCCCGGCTGTaGCCACTTCAGTCTGCAGCTCCAAGATGTTCTCCGTGTATATAT +
Preference number: 5 (lower is better)
Translates to: PPGPGWQGSSARPRL*PLQSAAPRCSPCIY
Trigger: ATATATACACGGAGAACATCTTGGAGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGCAGAAGAGCCCTGCCATCCTGGGCCTGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp CCACAGCAGGTGCAAACGCTGCAGAAGAGTGCTCTTGCCACTGCCTaGTTCGCCCACCACCAGTATGGTGTCGGCATCTCTGTTCAGGTG +
Preference number: 5 (lower is better)
Translates to: PQQVQTLQKSALATA*FAHHQYGVGISVQV
Trigger: CACCTGAACAGAGATGCCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TGGATCAGCTGGATGAGGCGGTCTGCCACCCCAGGTTCCCGGTGGTaGTTTCTCAGGTACAGTTGGATGCCCTCTTCAGAGAAGCCCTTC +
Preference number: 5 (lower is better)
Translates to: WISWMRRSATPGSRW*FLRYSWMPSSEKPF
Trigger: GAAGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAAGCACCACCGGGAACCTGGGGTGGCAGACCGCCTCATCCAGCTGATCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp ATCTCGTACAGGCTACGGATGAGCCAAATGAAGCCCGGCATAGCATaGATGCTCTTGGTCTCACCGGGCACGGCAGGCGGGATGGAATGG +
Preference number: 5 (lower is better)
Translates to: ISYRLRMSQMKPGIA*MLLVSPGTAGGMEW
Trigger: CCATTCCATCCCGCCTGCCGTGCCCGGTGAGACCAAGAGCATGCATGCTATGCCGGGCTTCATTTGGCTCATCCGTAGCCTGTACGAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TTCAGGTGCCCGATGTCCAAGCGACGGACAGCCTCCTGGGCCAACTaGTCCTCCTGCATCTCGTACAGGCTACGGATGAGCCAAATGAAG +
Preference number: 5 (lower is better)
Translates to: FRCPMSKRRTASWAN*SSCISYRLRMSQMK
Trigger: CTTCATTTGGCTCATCCGTAGCCTGTACGAGATGCAGGAGGAGCAGTTGGCCCAGGAGGCTGTCCGTCGCTTGGACATCGGGCACCTGAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp AGCCACTTTAGGTTCTGGTGGTCGGCTACAACTTCAGCCAGGGCTTaGGTGCCCTTATCACCCACGCTGTTGCCCCAGAACCCCAGGAAC +
Preference number: 5 (lower is better)
Translates to: SHFRFWWSATTSARA*VPLSPTLLPQNPRN
Trigger: GTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTTGCAGAAGAGTGCTCTaGCCACTGCCTGCTTCGCCC +
Preference number: 5 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSCRRVL*PLPASP
Trigger: GGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCA...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp GCCCTTCAGTTGCAACTCTGTGCGAACGAACTTCCTGAGGAGCGCTaGCACAGCATCCGGACGGCTGGTCAGCACCTTGCAGGCATTCTT +
Preference number: 5 (lower is better)
Translates to: ALQLQLCANELPEER*HSIRTAGQHLAGIL
Trigger: AAGAATGCCTGCAAGGTGCTGACCAGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAACTGAAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp CTTCAGAGAAGCCCTTCAGTTGCAACTCTGTGCGAACGAACTTCCTaGGGAGCGCTGACACAGCATCCGGACGGCTGGTCAGCACCTTGC +
Preference number: 5 (lower is better)
Translates to: LQRSPSVATLCERTS*GALTQHPDGWSAPC
Trigger: GCAAGGTGCTGACCAGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTCTCTGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TTGCCCACAGCAGGTGCAAACGCTGCAGAAGAGTGCTCTTGCCACTaGCTGCTTCGCCCACCACCAGTATGGTGTCGGCATCTCTGTTCA +
Preference number: 5 (lower is better)
Translates to: LPTAGANAAEECSCH*LLRPPPVWCRHLCS
Trigger: TGAACAGAGATGCCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp ATGAAGAGAAACTCCTGGAAGCTCCTCCCTGTTGCCCACAGCAGGTaGAAACGCTGCAGAAGAGTGCTCTTGCCACTGCCTGCTTCGCCC +
Preference number: 5 (lower is better)
Translates to: MKRNSWKLLPVAHSR*KRCRRVLLPLPASP
Trigger: GGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCCAGGAGTTTCTCTTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp GGGAGTGAGTGTCCCAGGACCCATACAGTTCAAAGGTATGACTGTTaGCCTGTGCCTCCTGCACAGCTTCGAGGAGCTTCTGACAGCCCC +
Preference number: 5 (lower is better)
Translates to: GSECPRTHTVQRYDC*PVPPAQLRGASDSP
Trigger: GGGGCTGTCAGAAGCTCCTCGAAGCTGTGCAGGAGGCACAGGCCAACAGTCATACCTTTGAACTGTATGGGTCCTGGGACACTCACTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp TTGAAGAGCAGAGTCTGGACTGACGTGGGGTCAATTGGAGAGCAGTaGCGCTCCCGGTCGGTGAACCGGAACTTGAACTCGTCCAAGCCA +
Preference number: 5 (lower is better)
Translates to: LKSRVWTDVGSIGEQ*RSRSVNRNLNSSKP
Trigger: TGGCTTGGACGAGTTCAAGTTCCGGTTCACCGACCGGGAGCGCCACTGCTCTCCAATTGACCCCACGTCAGTCCAGACTCTGCTCTTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp CGGTCTGCCACCCCAGGTTCCCGGTGGTGCTTTCTCAGGTACAGTTaGATGCCCTCTTCAGAGAAGCCCTTCAGTTGCAACTCTGTGCGA +
Preference number: 5 (lower is better)
Translates to: RSATPGSRWCFLRYS*MPSSEKPFSCNSVR
Trigger: TCGCACAGAGTTGCAACTGAAGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAAGCACCACCGGGAACCTGGGGTGGCAGACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGCGGTTTGGCCACGCATaGCAACTGTCGGCAGCTGAA +
Preference number: 5 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGRFGHA*QLSAAE
Trigger: TTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCG...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGTGTCCGTGCTGGTTGTaGGGAAGCCCCTGTTCTGCA +
Preference number: 5 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGCPCWL*GSPCSA
Trigger: TGCAGAACAGGGGCTTCCCAACAACCAGCACGGACA...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGGCTTCGCTGCCCTTCTaGACTCTGGAGCCCTGGATA +
Preference number: 5 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGASLPF*TLEPWI
Trigger: TATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAGC...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGAACTTCAGGGAGGTGTaGCTCTTGAGTCCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGNFREV*LLSPWA
Trigger: GGCCCAGGGACTCAAGAGCAACACCTCCCTGAAGTT...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGAACTTCAGCCAGGGCTaGGGTGCCCTTATCACCCAC +
Preference number: 5 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGNFSQG*GALITH
Trigger: GTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGTT...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp CCATTGGCCTTCACCGCAGCGAGATCAAGCAGCCTTCTTGCCCTCTaGGACGACGTGAAGATTGGCAGCCTGATCTCCTCACACTCGTAC +
Preference number: 5 (lower is better)
Translates to: PLAFTAARSSSLLAL*DDVKIGSLISSHSY
Trigger: GTACGAGTGTGAGGAGATCAGGCTGCCAATCTTCACGTCGTCTCAGAGGGCAAGAAGGCTGCTTGATCTCGCTGCGGTGAAGGCCAATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp CTAGGGCTTCGGCACCCATGCTGCCAATGTTGTTTCCTACCAGGCTaGGCCACTTTAGGTTCTGGTGGTCGGCTACAACTTCAGCCAGGG +
Preference number: 5 (lower is better)
Translates to: LGLRHPCCQCCFLPG*ATLGSGGRLQLQPG
Trigger: CCCTGGCTGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCTCAGCCTGGTAGGAAACAACATTGGCAGCATGGGTGCCGAAGCCCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp AGTCCTCCCTGGAGAGCACATCCCAAGACAGCAGCCAGTCTAAGATaGTCTCAAAGCCCTCCAAGGACCCTGAGATCAGCAGTGCCACCA +
Preference number: 5 (lower is better)
Translates to: SPPWRAHPKTAASLR*SQSPPRTLRSAVPP
Trigger: TGGTGGCACTGCTGATCTCAGGGTCCTTGGAGGGCTTTGAGAGCATCTTAGACTGGCTGCTGTCTTGGGATGTGCTCTCCAGGGAGGACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TGCTGTGATTTGCAGGTTGTGTGGCTCAGCCTTCTGCAGCAGGGCTaGTTCGCTGCCCTTCTTGACTCTGGAGCCCTGGATACACAGGTT +
Preference number: 5 (lower is better)
Translates to: CCDLQVVWLSLLQQG*FAALLDSGALDTQV
Trigger: AACCTGTGTATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAGCAGCCCTGCTGCAGAAGGCTGAGCCACACAACCTGCAAATCACAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp GTTGCAGTACAAAGGCCAGTGCAGCACACTCTGCAGGGCCCACTCTaGAAAATGTCAACTTCAGGTGCCCGATGTCCAAGCGACGGACAG +
Preference number: 5 (lower is better)
Translates to: VAVQRPVQHTLQGPL*KMSTSGARCPSDGQ
Trigger: CTGTCCGTCGCTTGGACATCGGGCACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAGAGTGTGCTGCACTGGCCTTTGTACTGCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp AGGCCGCTGGAGATGTTGCAGTACAAAGGCCAGTGCAGCACACTCTaGAGGGCCCACTCTGCAAAATGTCAACTTCAGGTGCCCGATGTC +
Preference number: 5 (lower is better)
Translates to: RPLEMLQYKGQCSTL*RAHSAKCQLQVPDV
Trigger: GACATCGGGCACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAGAGTGTGCTGCACTGGCCTTTGTACTGCAACATCTCCAGCGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp CACGCATCCGTGAGTTTGTTGTTGAAGAGAGCTAGTTTCTGCAGCTaGTCACAGCGAAGAGCACACTCAACCAGCGTGCGGGCACCTCGG +
Preference number: 5 (lower is better)
Translates to: HASVSLLLKRASFCS*SQRRAHSTSVRAPR
Trigger: CCGAGGTGCCCGCACGCTGGTTGAGTGTGCTCTTCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTTCAACAACAAACTCACGGATGCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp CAGGCGCACGCATCCGTGAGTTTGTTGTTGAAGAGAGCTAGTTTCTaGAGCTGCTCACAGCGAAGAGCACACTCAACCAGCGTGCGGGCA +
Preference number: 5 (lower is better)
Translates to: QAHASVSLLLKRASF*SCSQRRAHSTSVRA
Trigger: TGCCCGCACGCTGGTTGAGTGTGCTCTTCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTTCAACAACAAACTCACGGATGCGTGCGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp ACTTTAGGTTCTGGTGGTCGGCTACAACTTCAGCCAGGGCTTGGGTaGCCTTATCACCCACGCTGTTGCCCCAGAACCCCAGGAACTTCA +
Preference number: 5 (lower is better)
Translates to: TLGSGGRLQLQPGLG*PYHPRCCPRTPGTS
Trigger: TGAAGTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGTTGTAGCCGACCACCAGAACCTAAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp CAGGAAATGCTGCAGGATCAGGAGGTACATGTCCGTGCTGGTTGTTaGGAAGCCCCTGTTCTGCAGCAGAAGTTCCCGGTGGCATCTGGA +
Preference number: 5 (lower is better)
Translates to: QEMLQDQEVHVRAGC*EAPVLQQKFPVASG
Trigger: TCCAGATGCCACCGGGAACTTCTGCTGCAGAACAGGGGCTTCCCAACAACCAGCACGGACATGTACCTCCTGATCCTGCAGCATTTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp CTCTCAAAGCCCTCCAAGGACCCTGAGATCAGCAGTGCCACCAGCTaGCTCCTCTGTGCCTGGAACTCTTCCTGTGAGCACATGTCACAA +
Preference number: 5 (lower is better)
Translates to: LSKPSKDPEISSATS*LLCAWNSSCEHMSQ
Trigger: TTGTGACATGTGCTCACAGGAAGAGTTCCAGGCACAGAGGAGCCAGCTGGTGGCACTGCTGATCTCAGGGTCCTTGGAGGGCTTTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109634.3
CDS-3UTR CAA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGGAAGCTCCTCCCTGTaGCCCACAGCAGGTGCAAAC +
Preference number: 5 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAGSSSL*PTAGAN
Trigger: GTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCC...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTCGGCTGGTCAGCACCTaGCAGGCATTCTTCAGCAGG +
Preference number: 5 (lower is better)
Translates to: RQRTFSAGEARHLTFHQARLVST*QAFFSR
Trigger: CCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCCG...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCAGGGAGGTGTTGCTCTaGAGTCCCTGGGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: TERPCSERRAWFCPLQASREVLL*SPWAST
Trigger: GGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCCT...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATAGGGAGGTGTTGCTCTaGAGTCCCTGGGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNREVLL*SPWAST
Trigger: GGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCCT...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp AGTGTCCCAGGACCCATACAGTTCAAAGGTATGACTGTTGGCCTGTaGCTCCTGCACAGCTTCGAGGAGCTTCTGACAGCCCCAAACACC +
Preference number: 5 (lower is better)
Translates to: SVPGPIQFKGMTVGL*LLHSFEELLTAPNT
Trigger: GGTGTTTGGGGCTGTCAGAAGCTCCTCGAAGCTGTGCAGGAGGCACAGGCCAACAGTCATACCTTTGAACTGTATGGGTCCTGGGACACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp ATGGCAGGGCTCTTCTGCAAGGCCCCGGCTGTGCCCACTTCAGTCTaGAGCTCCAAGATGTTCTCCGTGTATATATCCTCCAGGCAAAGA +
Preference number: 5 (lower is better)
Translates to: MAGLFCKAPAVPTSV*SSKMFSVYISSRQR
Trigger: TCTTTGCCTGGAGGATATATACACGGAGAACATCTTGGAGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGCAGAAGAGCCCTGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp CCAGCTCCAGCATGGCTTCTACATGGTTGTAGAGTCTCCTCACAATaGCTGGCCGGTGACTCTGCAGGTCTCTGGTTGGATGAAGGGAGT +
Preference number: 5 (lower is better)
Translates to: PAPAWLLHGCRVSSQ*LAGDSAGLWLDEGS
Trigger: ACTCCCTTCATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCTACAACCATGTAGAAGCCATGCTGGAGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp GCAGAAGAGTGCTCTTGCCACTGCCTGCTTCGCCCACCACCAGTATaGTGTCGGCATCTCTGTTCAGGTGACCATGGGTATCAAAGAGGT +
Preference number: 5 (lower is better)
Translates to: AEECSCHCLLRPPPV*CRHLCSGDHGYQRG
Trigger: ACCTCTTTGATACCCATGGTCACCTGAACAGAGATGCCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGTGCAGAAGAGTGCTCTaGCCACTGCCTGCTTCGCCC +
Preference number: 5 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMCRRVL*PLPASP
Trigger: GGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCA...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATCGGCTGGTCAGCACCTaGCAGGCATTCTTCAGCAGG +
Preference number: 5 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNRLVST*QAFFSR
Trigger: CCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCCG...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp TCAGCACCTTGCAGGCATTCTTCAGCAGGTTCCCCTGGAGAAGGTTaGAGAGCAGAGTCTGGACTGACGTGGGGTCAATTGGAGAGCAGT +
Preference number: 5 (lower is better)
Translates to: SAPCRHSSAGSPGEG*RAESGLTWGQLESS
Trigger: ACTGCTCTCCAATTGACCCCACGTCAGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAACCTGCTGAAGAATGCCTGCAAGGTGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 90 bp CTCACAGCGAAGAGCACACTCAACCAGCGTGCGGGCACCTCGGTCTaGGATATTGTTATCTCGCAAATACAGAGCTGTGCAGACCCCAAG +
Preference number: 5 (lower is better)
Translates to: LTAKSTLNQRAGTSV*DIVISQIQSCADPK
Trigger: CTTGGGGTCTGCACAGCTCTGTATTTGCGAGATAACAATATCTCAGACCGAGGTGCCCGCACGCTGGTTGAGTGTGCTCTTCGCTGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TGCTCAAAGAGCAGCGTCCTCAGGGACAGCGGTTTGGCCACGCATTaGAACTGTCGGCAGCTGAATGGGAAAATGAAGAGAAACTCCTGG +
Preference number: 5 (lower is better)
Translates to: CSKSSVLRDSGLATH*NCRQLNGKMKRNSW
Trigger: CCAGGAGTTTCTCTTCATTTTCCCATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCGCTGTCCCTGAGGACGCTGCTCTTTGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp GGGCACCTCGGTCTGAGATATTGTTATCTCGCAAATACAGAGCTGTaGAGACCCCAAGGCACGGTCGCAGCTGTTCCACTCCAACATCTC +
Preference number: 5 (lower is better)
Translates to: GHLGLRYCYLANTEL*RPQGTVAAVPLQHL
Trigger: GAGATGTTGGAGTGGAACAGCTGCGACCGTGCCTTGGGGTCTGCACAGCTCTGTATTTGCGAGATAACAATATCTCAGACCGAGGTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp CTCCAGAATGGCACTGTTCCTGCTGAGGGCCTGCAGGAGGGCTTCTaGACCCCGGTAGGTGATGCCATTGTTGGACAGTTTCAAGAATTT +
Preference number: 5 (lower is better)
Translates to: LQNGTVPAEGLQEGF*TPVGDAIVGQFQEF
Trigger: AAATTCTTGAAACTGTCCAACAATGGCATCACCTACCGGGGTGCAGAAGCCCTCCTGCAGGCCCTCAGCAGGAACAGTGCCATTCTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp TGTAGAGTCTCCTCACAATGGCTGGCCGGTGACTCTGCAGGTCTCTaGTTGGATGAAGGGAGTGAGTGTCCCAGGACCCATACAGTTCAA +
Preference number: 5 (lower is better)
Translates to: CRVSSQWLAGDSAGL*LDEGSECPRTHTVQ
Trigger: TTGAACTGTATGGGTCCTGGGACACTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp CTCCAGCATGGCTTCTACATGGTTGTAGAGTCTCCTCACAATGGCTaGCCGGTGACTCTGCAGGTCTCTGGTTGGATGAAGGGAGTGAGT +
Preference number: 5 (lower is better)
Translates to: LQHGFYMVVESPHNG*PVTLQVSGWMKGVS
Trigger: ACTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCTACAACCATGTAGAAGCCATGCTGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp ATGTGCAGGAACTCCAGGGGCGCCTTGCTCCCGGGCACACTACTTTaGGCACGTACCAGGAAACCAAGAGAAATATCATCAGAGTCAACC +
Preference number: 5 (lower is better)
Translates to: MCRNSRGALLPGTLL*ARTRKPREISSEST
Trigger: GGTTGACTCTGATGATATTTCTCTTGGTTTCCTGGTACGTGCCCAAAGTAGTGTGCCCGGGAGCAAGGCGCCCCTGGAGTTCCTGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCCGGTTTGGCCACGCATaGCAACTGTCGGCAGCTGAA +
Preference number: 5 (lower is better)
Translates to: TERPCSERRAWFCPLQASRFGHA*QLSAAE
Trigger: TTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCG...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTTTCCCCTGGAGAAGGTaGAAGAGCAGAGTCTGGACT +
Preference number: 5 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSFPWRR*KSRVWT
Trigger: AGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAA...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CTCTTTAGAGGCAGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGTGTCCGTGCTGGTTGTaGGGAAGCCCCTGTTCTGCA +
Preference number: 5 (lower is better)
Translates to: LFRGRNAVLSAHESLKSVCPCWL*GSPCSA
Trigger: TGCAGAACAGGGGCTTCCCAACAACCAGCACGGACA...CACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCTGCCTCTAAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGGCAGAGAACCTTCTCAGCTGGAGAAGCTCGACACCTCACGTTCCATCAAGCTGAAGGCTGCTGTGATTaGCAGGTTGTGTGGCTCAGC +
Preference number: 5 (lower is better)
Translates to: RQRTFSAGEARHLTFHQAEGCCD*QVVWLS
Trigger: GCTGAGCCACACAACCTGCAAATCACAGCAGCCTTC...AGCTTGATGGAACGTGAGGTGTCGAGCTTCTCCAGCTGAGAAGGTTCTCTGCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGTTATCACCCACGCTGTaGCCCCAGAACCCCAGGAAC +
Preference number: 5 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMLSPTL*PQNPRN
Trigger: GTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGATAA...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp ACAGAAAGACCTTGCTCAGAAAGAAGGGCTTGGTTTTGTCCCCTGCAAGCCTCCAACTTCAGCCAGGGCTaGGGTGCCCTTATCACCCAC +
Preference number: 5 (lower is better)
Translates to: TERPCSERRAWFCPLQASNFSQG*GALITH
Trigger: GTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGTT...GGAGGCTTGCAGGGGACAAAACCAAGCCCTTCTTTCTGAGCAAGGTCTTTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp GCTGAATGGGAAAATGAAGAGAAACTCCTGGAAGCTCCTCCCTGTTaGCCACAGCAGGTGCAAACGCTGCAGAAGAGTGCTCTTGCCACT +
Preference number: 5 (lower is better)
Translates to: AEWENEEKLLEAPPC*PQQVQTLQKSALAT
Trigger: AGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCCAGGAGTTTCTCTTCATTTTCCCATTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp CATTGCAACTGTCGGCAGCTGAATGGGAAAATGAAGAGAAACTCCTaGAAGCTCCTCCCTGTTGCCCACAGCAGGTGCAAACGCTGCAGA +
Preference number: 5 (lower is better)
Translates to: HCNCRQLNGKMKRNS*KLLPVAHSRCKRCR
Trigger: TCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCCAGGAGTTTCTCTTCATTTTCCCATTCAGCTGCCGACAGTTGCAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp ATGCTGCCAATGTTGTTTCCTACCAGGCTGAGCCACTTTAGGTTCTaGTGGTCGGCTACAACTTCAGCCAGGGCTTGGGTGCCCTTATCA +
Preference number: 5 (lower is better)
Translates to: MLPMLFPTRLSHFRF*WSATTSARAWVPLS
Trigger: TGATAAGGGCACCCAAGCCCTGGCTGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCTCAGCCTGGTAGGAAACAACATTGGCAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTGGAAGCTCCTCCCTGTaGCCCACAGCAGGTGCAAAC +
Preference number: 5 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIGSSSL*PTAGAN
Trigger: GTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCC...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTCGGCTGGTCAGCACCTaGCAGGCATTCTTCAGCAGG +
Preference number: 5 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIRLVST*QAFFSR
Trigger: CCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCCG...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCTGTCCGTGCTGGTTGTaGGGAAGCCCCTGTTCTGCA +
Preference number: 5 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSCPCWL*GSPCSA
Trigger: TGCAGAACAGGGGCTTCCCAACAACCAGCACGGACA...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATCAGCTGAAAAGGTGCTaGAGAGAGGCCACCGATGTG +
Preference number: 5 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNQLKRC*REATDV
Trigger: CACATCGGTGGCCTCTCTCAAGCACCTTTTCAGCTG...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTAGGGAGGTGTTGCTCTaGAGTCCCTGGGCCAGCACC +
Preference number: 5 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSREVLL*SPWAST
Trigger: GGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCCT...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCAACTTCAGCCAGGGCTaGGGTGCCCTTATCACCCAC +
Preference number: 5 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTNFSQG*GALITH
Trigger: GTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGTT...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp TTTCTCAGGTACAGTTGGATGCCCTCTTCAGAGAAGCCCTTCAGTTaGAACTCTGTGCGAACGAACTTCCTGAGGAGCGCTGACACAGCA +
Preference number: 5 (lower is better)
Translates to: FLRYSWMPSSEKPFS*NSVRTNFLRSADTA
Trigger: TGCTGTGTCAGCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 90 bp CTAGTTTCTGCAGCTGCTCACAGCGAAGAGCACACTCAACCAGCGTaGGGGCACCTCGGTCTGAGATATTGTTATCTCGCAAATACAGAG +
Preference number: 5 (lower is better)
Translates to: LVSAAAHSEEHTQPA*GHLGLRYCYLANTE
Trigger: CTCTGTATTTGCGAGATAACAATATCTCAGACCGAGGTGCCCGCACGCTGGTTGAGTGTGCTCTTCGCTGTGAGCAGCTGCAGAAACTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATTCTGCAGGTCTCTGGTaGGATGAAGGGAGTGAGTGT +
Preference number: 5 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNSAGLW*DEGSEC
Trigger: ACACTCACTCCCTTCATCCAACCAGAGACCTGCAGA...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTCGGTTTGGCCACGCATaGCAACTGTCGGCAGCTGAA +
Preference number: 5 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIRFGHA*QLSAAE
Trigger: TTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCG...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATTTCCCCTGGAGAAGGTaGAAGAGCAGAGTCTGGACT +
Preference number: 5 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNFPWRR*KSRVWT
Trigger: AGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAA...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTAGCTTCGCTGCCCTTCTaGACTCTGGAGCCCTGGATA +
Preference number: 5 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVASLPF*TLEPWI
Trigger: TATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAGC...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCGAAGGCTGCTGTGATTaGCAGGTTGTGTGGCTCAGC +
Preference number: 5 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTEGCCD*QVVWLS
Trigger: GCTGAGCCACACAACCTGCAAATCACAGCAGCCTTC...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTCACTAATGACAAGAAGTTCTGCTaGTGTGCAAGGAGCTTGGCC +
Preference number: 5 (lower is better)
Translates to: RGLCHPHAVRAFPLPVTNDKKFC*CARSLA
Trigger: GGCCAAGCTCCTTGCACACAAGCAGAACTTCTTGTC...ATTAGTGACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGGACAAGAAGTTCTGCTaGTGTGCAAGGAGCTTGGCC +
Preference number: 5 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMDKKFC*CARSLA
Trigger: GGCCAAGCTCCTTGCACACAAGCAGAACTTCTTGTC...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AGAAACGCGGTCCTCTCGGCTCATGAGTCTCTTAAGTCAGTGCAGTTAACAACCTCTGCAGGTCTCTGGTaGGATGAAGGGAGTGAGTGT +
Preference number: 5 (lower is better)
Translates to: RNAVLSAHESLKSVQLTTSAGLW*DEGSEC
Trigger: ACACTCACTCCCTTCATCCAACCAGAGACCTGCAGA...GGTTGTTAACTGCACTGACTTAAGAGACTCATGAGCCGAGAGGACCGCGTTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp GAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCTCCTTCCCCTGGAGAAGGTaGAAGAGCAGAGTCTGGACT +
Preference number: 5 (lower is better)
Translates to: EMLTYASIPCLPPPPSSSFPWRR*KSRVWT
Trigger: AGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAA...GGAGGAAGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTGCTTCGCTGCCCTTCTaGACTCTGGAGCCCTGGATA +
Preference number: 5 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSASLPF*TLEPWI
Trigger: TATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAGC...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AACCAGCCCTGCGCAGCAGAGGGATTCTGCCTGATGTTACTCAGCCTCCAGAGTCCTCGGTCTGAGATATaGTTATCTCGCAAATACAGA +
Preference number: 5 (lower is better)
Translates to: NQPCAAEGFCLMLLSLQSPRSEI*LSRKYR
Trigger: TCTGTATTTGCGAGATAACAATATCTCAGACCGAGG...ACTCTGGAGGCTGAGTAACATCAGGCAGAATCCCTCTGCTGCGCAGGGCTGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAACCAGAGAGGATTGTGTCACCCACATGCAGTGAGGGCCTTTCCCCTTCCAGTTCCGTGAGTTTGTTGTaGAAGAGAGCTAGTTTCTGC +
Preference number: 5 (lower is better)
Translates to: QPERIVSPTCSEGLSPSSSVSLL*KRASFC
Trigger: GCAGAAACTAGCTCTCTTCAACAACAAACTCACGGA...ACTGGAAGGGGAAAGGCCCTCACTGCATGTGGGTGACACAATCCTCTCTGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTTATCACCCACGCTGTaGCCCCAGAACCCCAGGAAC +
Preference number: 5 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSLSPTL*PQNPRN
Trigger: GTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGATAA...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTCAGCTGAAAAGGTGCTaGAGAGAGGCCACCGATGTG +
Preference number: 5 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSQLKRC*REATDV
Trigger: CACATCGGTGGCCTCTCTCAAGCACCTTTTCAGCTG...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTGACAAGAAGTTCTGCTaGTGTGCAAGGAGCTTGGCC +
Preference number: 5 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIDKKFC*CARSLA
Trigger: GGCCAAGCTCCTTGCACACAAGCAGAACTTCTTGTC...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAAGTCTGTTGTCAGAGTTCAGTTCATAGGCACCGACTCCGGGCCTGGTGGGAAAGTTGAATTTCTCTaGAGTCCTTCTGCGAGAGAA +
Preference number: 5 (lower is better)
Translates to: QKSVVRVQFIGTDSGPGGKVEFL*SPSARE
Trigger: TTCTCTCGCAGAAGGACTCAAGAGAAATTCAACTTT...CCCACCAGGCCCGGAGTCGGTGCCTATGAACTGAACTCTGACAACAGACTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CTGCTGTTCAAACATGAGGGCAGCAGCCACAGCTGTCCTCACTCAGAAGAAATGTCCGTGAGTTTGTTGTaGAAGAGAGCTAGTTTCTGC +
Preference number: 5 (lower is better)
Translates to: LLFKHEGSSHSCPHSEEMSVSLL*KRASFC
Trigger: GCAGAAACTAGCTCTCTTCAACAACAAACTCACGGA...CATTTCTTCTGAGTGAGGACAGCTGTGGCTGCTGCCCTCATGTTTGAACAGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAAACTTCAGGGAGGTGTaGCTCTTGAGTCCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGNFREV*LLSPWA
Trigger: GGCCCAGGGACTCAAGAGCAACACCTCCCTGAAGTT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAGAAGGCTGCTGTGATTaGCAGGTTGTGTGGCTCAGC +
Preference number: 5 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGEGCCD*QVVWLS
Trigger: GCTGAGCCACACAACCTGCAAATCACAGCAGCCTTC...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTACCTGGAGCTCAGTGTTaGGATTTCCTCCAAAGAGAA +
Preference number: 5 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVPGAQC*DFLQRE
Trigger: TTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAGG...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 90 bp CTCTTGAGTCCTTCTGCGAGAGAATATACCCCTTCGTCACAGATATaGTTTTCCTCTAGGCAGAGTTCCTCTAGTGACTTGTTCTTCTCC +
Preference number: 5 (lower is better)
Translates to: LLSPSAREYTPSSQI*FSSRQSSSSDLFFS
Trigger: GGAGAAGAACAAGTCACTAGAGGAACTCTGCCTAGAGGAAAACCATATCTGTGACGAAGGGGTATATTCTCTCGCAGAAGGACTCAAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGATCTGCAGGTCTCTGGTaGGATGAAGGGAGTGAGTGT +
Preference number: 5 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGSAGLW*DEGSEC
Trigger: ACACTCACTCCCTTCATCCAACCAGAGACCTGCAGA...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAAGGAAGCTCCTCCCTGTaGCCCACAGCAGGTGCAAAC +
Preference number: 5 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKGSSSL*PTAGAN
Trigger: GTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTTCC...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp CAGAGCTGCTTCCTGAATACTCCTCTTCAAAAAGGAGGAGGAAGGCGTCTTGTACCTCGGTCTGAGATATaGTTATCTCGCAAATACAGA +
Preference number: 5 (lower is better)
Translates to: QSCFLNTPLQKGGGRRLVPRSEI*LSRKYR
Trigger: TCTGTATTTGCGAGATAACAATATCTCAGACCGAGG...TACAAGACGCCTTCCTCCTCCTTTTTGAAGAGGAGTATTCAGGAAGCAGCTCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCAGAAGAAATGCTCACATATGCAAGCATACCCTGTCTTCCTCCTCCTCCATCTTCCGTGAGTTTGTTGTaGAAGAGAGCTAGTTTCTGC +
Preference number: 5 (lower is better)
Translates to: SEEMLTYASIPCLPPPPSSVSLL*KRASFC
Trigger: GCAGAAACTAGCTCTCTTCAACAACAAACTCACGGA...AGATGGAGGAGGAGGAAGACAGGGTATGCTTGCATATGTGAGCATTTCTTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAACTTCAGGGAGGTGTaGCTCTTGAGTCCCTGGGCC +
Preference number: 5 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRNFREV*LLSPWA
Trigger: GGCCCAGGGACTCAAGAGCAACACCTCCCTGAAGTT...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGATTATCACCCACGCTGTaGCCCCAGAACCCCAGGAAC +
Preference number: 5 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRLSPTL*PQNPRN
Trigger: GTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGATAA...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp GGCGTTCAGTTAACATCCATGCTTTCCACTGAACCCTTCAGAATCCTGGCCATTAAAGTTGAATTTCTCTaGAGTCCTTCTGCGAGAGAA +
Preference number: 5 (lower is better)
Translates to: GVQLTSMLSTEPFRILAIKVEFL*SPSARE
Trigger: TTCTCTCGCAGAAGGACTCAAGAGAAATTCAACTTT...AATGGCCAGGATTCTGAAGGGTTCAGTGGAAAGCATGGATGTTAACTGAACGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TATAGAGTAATTGATGTTACTGGAAACCAAAGGCCATGTGTGATCCCAGCTGGAAGTTCCTCTAGTGACTaGTTCTTCTCCAGCATCAGT +
Preference number: 5 (lower is better)
Translates to: YRVIDVTGNQRPCVIPAGSSSSD*FFSSIS
Trigger: ACTGATGCTGGAGAAGAACAAGTCACTAGAGGAACT...TCCAGCTGGGATCACACATGGCCTTTGGTTTCCAGTAACATCAATTACTCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGCCTGGAGCTCAGTGTTaGGATTTCCTCCAAAGAGAA +
Preference number: 5 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQPGAQC*DFLQRE
Trigger: TTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAGG...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGAGTTCCTCTAGTGACTaGTTCTTCTCCAGCATCAGT +
Preference number: 5 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQSSSSD*FFSSIS
Trigger: ACTGATGCTGGAGAAGAACAAGTCACTAGAGGAACT...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAACCTGGAGCTCAGTGTTaGGATTTCCTCCAAAGAGAA +
Preference number: 5 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKPGAQC*DFLQRE
Trigger: TTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAGG...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGAAAAGTTCCTCTAGTGACTaGTTCTTCTCCAGCATCAGT +
Preference number: 5 (lower is better)
Translates to: SYKSRTSWGQRTVVCVKKSSSSD*FFSSIS
Trigger: ACTGATGCTGGAGAAGAACAAGTCACTAGAGGAACT...TTTCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp TTTCTTATAAATCTAGAACATCCTGGGGGCAAAGGACTGTTGTTTGTGTTAAGACCTCGGTCTGAGATATaGTTATCTCGCAAATACAGA +
Preference number: 5 (lower is better)
Translates to: FLINLEHPGGKGLLFVLRPRSEI*LSRKYR
Trigger: TCTGTATTTGCGAGATAACAATATCTCAGACCGAGG...TCTTAACACAAACAACAGTCCTTTGCCCCCAGGATGTTCTAGATTTATAAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS-3UTR CAA 90 bp AAAATGGAGCTGTCTTTCAGGAATATGTTTCAGAAGTCTGTTGTCAGAGTTCAGAAAGTTGAATTTCTCTaGAGTCCTTCTGCGAGAGAA +
Preference number: 5 (lower is better)
Translates to: KMELSFRNMFQKSVVRVQKVEFL*SPSARE
Trigger: TTCTCTCGCAGAAGGACTCAAGAGAAATTCAACTTT...CTGAACTCTGACAACAGACTTCTGAAACATATTCCTGAAAGACAGCTCCATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CTCGCGGAGGCTGTGGGCCAGACACGAGCGGGCACGTaGCTGACGCTGGAGCAGTACCCTCTCGGAGACCTG +
Preference number: 6 (lower is better)
Translates to: LAEAVGQTRAGT*LTLEQYPLGDL
Trigger: CAGGTCTCCGAGAGGGTACTGCTCCAGCGTCAGGCACGTGCCCGCTCGTGTCTGGCCCACAGCCTCCGCGAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GTCTCACCGGGCACGGCAGGCGGGATGGAATGGAAGTaGTCGCGGAGGCTGTGGGCCAGACACGAGCGGGCA +
Preference number: 6 (lower is better)
Translates to: VSPGTAGGMEWK*SRRLWARHERA
Trigger: TGCCCGCTCGTGTCTGGCCCACAGCCTCCGCGAGCACTTCCATTCCATCCCGCCTGCCGTGCCCGGTGAGAC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp CGGAGGCTGTGGGCCAGACACGAGCGGGCACGTGCCTaGCGCTGGAGCAGTACCCTCTCGGAGACCTGGCAT +
Preference number: 6 (lower is better)
Translates to: RRLWARHERARA*RWSSTLSETWH
Trigger: ATGCCAGGTCTCCGAGAGGGTACTGCTCCAGCGTCAGGCACGTGCCCGCTCGTGTCTGGCCCACAGCCTCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CTCATGGCCAGGCCCCGGAGAGCCAGGTGGCCAAGGTaGAGGAGGGTGGAGAGCCGGCTTTGGAGGAGTCCA +
Preference number: 6 (lower is better)
Translates to: LMARPRRARWPR*RRVESRLWRSP
Trigger: TGGACTCCTCCAAAGCCGGCTCTCCACCCTCCTGCACCTTGGCCACCTGGCTCTCCGGGGCCTGGCCATGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp GAGCCGGCTTTGGAGGAGTCCAGGTCCCAGACCGAGTaGGGAGGAGTCCGGAGGGGAGGCATGCAGCAGGAA +
Preference number: 6 (lower is better)
Translates to: EPALEESRSQTE*GGVRRGGMQQE
Trigger: TTCCTGCTGCATGCCTCCCCTCCGGACTCCTCCCCACTCGGTCTGGGACCTGGACTCCTCCAAAGCCGGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp CTCTTGGTCTCACCGGGCACGGCAGGCGGGATGGAATaGAAGTGCTCGCGGAGGCTGTGGGCCAGACACGAG +
Preference number: 6 (lower is better)
Translates to: LLVSPGTAGGME*KCSRRLWARHE
Trigger: CTCGTGTCTGGCCCACAGCCTCCGCGAGCACTTCCATTCCATCCCGCCTGCCGTGCCCGGTGAGACCAAGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp CCTGGAGCTGCTGGGCTGAGAACACATAGCAGCTCATaGCCAGGCCCCGGAGAGCCAGGTGGCCAAGGTGCA +
Preference number: 6 (lower is better)
Translates to: PGAAGLRTHSSS*PGPGEPGGQGA
Trigger: TGCACCTTGGCCACCTGGCTCTCCGGGGCCTGGCCATGAGCTGCTATGTGTTCTCAGCCCAGCAGCTCCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp GCTGCTTCGCTGCCCTTCTTGACTCTGGAGCCCTGGATACACAGGTaGGGCAGCAGCCTTCCCAGCAGTGAGCTGCCCAGCCGGCCACAG +
Preference number: 6 (lower is better)
Translates to: AASLPFLTLEPWIHR*GSSLPSSELPSRPQ
Trigger: CTGTGGCCGGCTGGGCAGCTCACTGCTGGGAAGGCTGCTGCCCAACCTGTGTATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp TCACCCACGCTGTTGCCCCAGAACCCCAGGAACTTCAGGGAGGTGTaGCTCTTGAGTCCCTGGGCCAGCACCTCGGCTCCAGCGGCTGTG +
Preference number: 6 (lower is better)
Translates to: SPTLLPQNPRNFREV*LLSPWASTSAPAAV
Trigger: CACAGCCGCTGGAGCCGAGGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCCTGAAGTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp AACCATGCAGGGCTGAGGTGGCTTGGATCAGCTGGATaGGGCGGTCTGCCACCCCAGGTTCCCGGTGGTGCT +
Preference number: 6 (lower is better)
Translates to: NHAGLRWLGSAG*GGLPPQVPGGA
Trigger: AGCACCACCGGGAACCTGGGGTGGCAGACCGCCTCATCCAGCTGATCCAAGCCACCTCAGCCCTGCATGGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp CACAAACCATGCAGGGCTGAGGTGGCTTGGATCAGCTaGATGAGGCGGTCTGCCACCCCAGGTTCCCGGTGG +
Preference number: 6 (lower is better)
Translates to: HKPCRAEVAWIS*MRRSATPGSRW
Trigger: CCACCGGGAACCTGGGGTGGCAGACCGCCTCATCCAGCTGATCCAAGCCACCTCAGCCCTGCATGGTTTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp CCCTGGGCCAGCACCTCGGCTCCAGCGGCTGTGATGTaGTTGTTCCCCACCCTCAGGGACAAGAAGTTCTGC +
Preference number: 6 (lower is better)
Translates to: PWASTSAPAAVM*LFPTLRDKKFC
Trigger: GCAGAACTTCTTGTCCCTGAGGGTGGGGAACAATCACATCACAGCCGCTGGAGCCGAGGTGCTGGCCCAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp CTCGAAGCCAAACCTCCAGAATGGCACTGTTCCTGCTaGGGGCCTGCAGGAGGGCTTCTGCACCCCGGTAGG +
Preference number: 6 (lower is better)
Translates to: LEAKPPEWHCSC*GPAGGLLHPGR
Trigger: CCTACCGGGGTGCAGAAGCCCTCCTGCAGGCCCTCAGCAGGAACAGTGCCATTCTGGAGGTTTGGCTTCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CCAGGATGGCAGGGCTCTTCTGCAAGGCCCCGGCTGTaGCCACTTCAGTCTGCAGCTCCAAGATGTTCTCCG +
Preference number: 6 (lower is better)
Translates to: PGWQGSSARPRL*PLQSAAPRCSP
Trigger: CGGAGAACATCTTGGAGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGCAGAAGAGCCCTGCCATCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CTGACGCTGGAGCAGTACCCTCTCGGAGACCTGGCATaGAGCCAACAGGTCCCGATGCTGCTGGGACAACAG +
Preference number: 6 (lower is better)
Translates to: LTLEQYPLGDLA*SQQVPMLLGQQ
Trigger: CTGTTGTCCCAGCAGCATCGGGACCTGTTGGCTGCATGCCAGGTCTCCGAGAGGGTACTGCTCCAGCGTCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp AGGCTACGGATGAGCCAAATGAAGCCCGGCATAGCATaGATGCTCTTGGTCTCACCGGGCACGGCAGGCGGG +
Preference number: 6 (lower is better)
Translates to: RLRMSQMKPGIA*MLLVSPGTAGG
Trigger: CCCGCCTGCCGTGCCCGGTGAGACCAAGAGCATGCATGCTATGCCGGGCTTCATTTGGCTCATCCGTAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CCGATGTCCAAGCGACGGACAGCCTCCTGGGCCAACTaGTCCTCCTGCATCTCGTACAGGCTACGGATGAGC +
Preference number: 6 (lower is better)
Translates to: PMSKRRTASWAN*SSCISYRLRMS
Trigger: GCTCATCCGTAGCCTGTACGAGATGCAGGAGGAGCAGTTGGCCCAGGAGGCTGTCCGTCGCTTGGACATCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CAGCCAGGGCTTGGGTGCCCTTATCACCCACGCTGTTaGCCCAGAACCCCAGGAACTTCAGGGAGGTGTTGC +
Preference number: 6 (lower is better)
Translates to: QPGLGCPYHPRC*PRTPGTSGRCC
Trigger: GCAACACCTCCCTGAAGTTCCTGGGGTTCTGGGGCAACAGCGTGGGTGATAAGGGCACCCAAGCCCTGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp CTGTTGCCCCAGAACCCCAGGAACTTCAGGGAGGTGTaGCTCTTGAGTCCCTGGGCCAGCACCTCGGCTCCA +
Preference number: 6 (lower is better)
Translates to: LLPQNPRNFREV*LLSPWASTSAP
Trigger: TGGAGCCGAGGTGCTGGCCCAGGGACTCAAGAGCAACACCTCCCTGAAGTTCCTGGGGTTCTGGGGCAACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp AAGCTCCTCCCTGTTGCCCACAGCAGGTGCAAACGCTaGAGAAGAGTGCTCTTGCCACTGCCTGCTTCGCCC +
Preference number: 6 (lower is better)
Translates to: KLLPVAHSRCKR*RRVLLPLPASP
Trigger: GGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAGGAGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GCGCTGACACAGCATCCGGACGGCTGGTCAGCACCTTaGAGGCATTCTTCAGCAGGTTCCCCTGGAGAAGGT +
Preference number: 6 (lower is better)
Translates to: ALTQHPDGWSAP*RHSSAGSPGEG
Trigger: ACCTTCTCCAGGGGAACCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCCGTCCGGATGCTGTGTCAGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp TCTGCAGGGCCCACTCTGCAAAATGTCAACTTCAGGTaGCCGATGTCCAAGCGACGGACAGCCTCCTGGGCC +
Preference number: 6 (lower is better)
Translates to: SAGPTLQNVNFR*PMSKRRTASWA
Trigger: GGCCCAGGAGGCTGTCCGTCGCTTGGACATCGGGCACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp TCTGGTGGTCGGCTACAACTTCAGCCAGGGCTTGGGTaGCCTTATCACCCACGCTGTTGCCCCAGAACCCCA +
Preference number: 6 (lower is better)
Translates to: SGGRLQLQPGLG*PYHPRCCPRTP
Trigger: TGGGGTTCTGGGGCAACAGCGTGGGTGATAAGGGCACCCAAGCCCTGGCTGAAGTTGTAGCCGACCACCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp TTGTTCCAGACTGTGTCCAGCAGACGCCTGGCAGAATaGGAGAGAGGTTGGCCAGGGAGGCTGAGGCCCTCA +
Preference number: 6 (lower is better)
Translates to: LFQTVSSRRLAE*ERGWPGRLRPS
Trigger: TGAGGGCCTCAGCCTCCCTGGCCAACCTCTCTCCCATTCTGCCAGGCGTCTGCTGGACACAGTCTGGAACAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp AGCGCTGACACAGCATCCGGACGGCTGGTCAGCACCTaGCAGGCATTCTTCAGCAGGTTCCCCTGGAGAAGG +
Preference number: 6 (lower is better)
Translates to: SADTASGRLVST*QAFFSRFPWRR
Trigger: CCTTCTCCAGGGGAACCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCCGTCCGGATGCTGTGTCAGCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp CACTGGAAGGTAATGTGCAGGAACTCCAGGGGCGCCTaGCTCCCGGGCACACTACTTTGGGCACGTACCAGG +
Preference number: 6 (lower is better)
Translates to: HWKVMCRNSRGA*LPGTLLWARTR
Trigger: CCTGGTACGTGCCCAAAGTAGTGTGCCCGGGAGCAAGGCGCCCCTGGAGTTCCTGCACATTACCTTCCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp CTCCCTGTTGCCCACAGCAGGTGCAAACGCTGCAGAAGAGTGCTCTaGCCACTGCCTGCTTCGCCCACCACCAGTATGGTGTCGGCATCT +
Preference number: 6 (lower is better)
Translates to: LPVAHSRCKRCRRVL*PLPASPTTSMVSAS
Trigger: AGATGCCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGGCAACAGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp AGGCTACGGATGAGCCAAATGAAGCCCGGCATAGCATGCATGCTCTaGGTCTCACCGGGCACGGCAGGCGGGATGGAATGGAAGTGCTCG +
Preference number: 6 (lower is better)
Translates to: RLRMSQMKPGIACML*VSPGTAGGMEWKCS
Trigger: CGAGCACTTCCATTCCATCCCGCCTGCCGTGCCCGGTGAGACCAAGAGCATGCATGCTATGCCGGGCTTCATTTGGCTCATCCGTAGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp GTTCCCCTGGAGAAGGTTGAAGAGCAGAGTCTGGACTaGCGTGGGGTCAATTGGAGAGCAGTGGCGCTCCCG +
Preference number: 6 (lower is better)
Translates to: VPLEKVEEQSLD*RGVNWRAVALP
Trigger: CGGGAGCGCCACTGCTCTCCAATTGACCCCACGTCAGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GCAGGTGCAAACGCTGCAGAAGAGTGCTCTTGCCACTaGCTGCTTCGCCCACCACCAGTATGGTGTCGGCAT +
Preference number: 6 (lower is better)
Translates to: AGANAAEECSCH*LLRPPPVWCRH
Trigger: ATGCCGACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CCCACAGCAGGTGCAAACGCTGCAGAAGAGTGCTCTTaGCACTGCCTGCTTCGCCCACCACCAGTATGGTGT +
Preference number: 6 (lower is better)
Translates to: PTAGANAAEECS*HCLLRPPPVWC
Trigger: ACACCATACTGGTGGTGGGCGAAGCAGGCAGTGGCAAGAGCACTCTTCTGCAGCGTTTGCACCTGCTGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp AGCAGTGAGCTGCCCAGCCGGCCACAGCTGAAAAGGTaGTTGAGAGAGGCCACCGATGTGTCAGCACTGACA +
Preference number: 6 (lower is better)
Translates to: SSELPSRPQLKR*LREATDVSALT
Trigger: TGTCAGTGCTGACACATCGGTGGCCTCTCTCAAGCACCTTTTCAGCTGTGGCCGGCTGGGCAGCTCACTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp TTGCAGGTTGTGTGGCTCAGCCTTCTGCAGCAGGGCTaGTTCGCTGCCCTTCTTGACTCTGGAGCCCTGGAT +
Preference number: 6 (lower is better)
Translates to: LQVVWLSLLQQG*FAALLDSGALD
Trigger: ATCCAGGGCTCCAGAGTCAAGAAGGGCAGCGAAGCAGCCCTGCTGCAGAAGGCTGAGCCACACAACCTGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GGCACTGTTCCTGCTGAGGGCCTGCAGGAGGGCTTCTaGACCCCGGTAGGTGATGCCATTGTTGGACAGTTT +
Preference number: 6 (lower is better)
Translates to: GTVPAEGLQEGF*TPVGDAIVGQF
Trigger: AAACTGTCCAACAATGGCATCACCTACCGGGGTGCAGAAGCCCTCCTGCAGGCCCTCAGCAGGAACAGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp AGAGTCTGGACTGACGTGGGGTCAATTGGAGAGCAGTaGCGCTCCCGGTCGGTGAACCGGAACTTGAACTCG +
Preference number: 6 (lower is better)
Translates to: RVWTDVGSIGEQ*RSRSVNRNLNS
Trigger: CGAGTTCAAGTTCCGGTTCACCGACCGGGAGCGCCACTGCTCTCCAATTGACCCCACGTCAGTCCAGACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp AGCTGGATGAGGCGGTCTGCCACCCCAGGTTCCCGGTaGTGCTTTCTCAGGTACAGTTGGATGCCCTCTTCA +
Preference number: 6 (lower is better)
Translates to: SWMRRSATPGSR*CFLRYSWMPSS
Trigger: TGAAGAGGGCATCCAACTGTACCTGAGAAAGCACCACCGGGAACCTGGGGTGGCAGACCGCCTCATCCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp CAGTGCTCAAAGAGCAGCGTCCTCAGGGACAGCGGTTaGGCCACGCATTGCAACTGTCGGCAGCTGAATGGG +
Preference number: 6 (lower is better)
Translates to: QCSKSSVLRDSG*ATHCNCRQLNG
Trigger: CCCATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCGCTGTCCCTGAGGACGCTGCTCTTTGAGCACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp ATGAGCCAAATGAAGCCCGGCATAGCATGCATGCTCTaGGTCTCACCGGGCACGGCAGGCGGGATGGAATGG +
Preference number: 6 (lower is better)
Translates to: MSQMKPGIACML*VSPGTAGGMEW
Trigger: CCATTCCATCCCGCCTGCCGTGCCCGGTGAGACCAAGAGCATGCATGCTATGCCGGGCTTCATTTGGCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp TTCCTGAGGAGCGCTGACACAGCATCCGGACGGCTGGTCAGCACCTaGCAGGCATTCTTCAGCAGGTTCCCCTGGAGAAGGTTGAAGAGC +
Preference number: 6 (lower is better)
Translates to: FLRSADTASGRLVST*QAFFSRFPWRRLKS
Trigger: GCTCTTCAACCTTCTCCAGGGGAACCTGCTGAAGAATGCCTGCAAGGTGCTGACCAGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp GCGGTCTGCCACCCCAGGTTCCCGGTGGTGCTTTCTCAGGTACAGTaGGATGCCCTCTTCAGAGAAGCCCTTCAGTTGCAACTCTGTGCG +
Preference number: 6 (lower is better)
Translates to: AVCHPRFPVVLSQVQ*DALFREALQLQLCA
Trigger: CGCACAGAGTTGCAACTGAAGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAAGCACCACCGGGAACCTGGGGTGGCAGACCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp GGCCAGCAGCAGTGCTCAAAGAGCAGCGTCCTCAGGGACAGCGGTTaGGCCACGCATTGCAACTGTCGGCAGCTGAATGGGAAAATGAAG +
Preference number: 6 (lower is better)
Translates to: GQQQCSKSSVLRDSG*ATHCNCRQLNGKMK
Trigger: CTTCATTTTCCCATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCGCTGTCCCTGAGGACGCTGCTCTTTGAGCACTGCTGCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp GCAGCAGGAAATGCTGCAGGATCAGGAGGTACATGTCCGTGCTGGTaGTTGGGAAGCCCCTGTTCTGCAGCAGAAGTTCCCGGTGGCATC +
Preference number: 6 (lower is better)
Translates to: AAGNAAGSGGTCPCW*LGSPCSAAEVPGGI
Trigger: GATGCCACCGGGAACTTCTGCTGCAGAACAGGGGCTTCCCAACAACCAGCACGGACATGTACCTCCTGATCCTGCAGCATTTCCTGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp CCCACCACCAGTATGGTGTCGGCATCTCTGTTCAGGTaGCCATGGGTATCAAAGAGGTCCTCCAGGCCCAGG +
Preference number: 6 (lower is better)
Translates to: PTTSMVSASLFR*PWVSKRSSRPR
Trigger: CCTGGGCCTGGAGGACCTCTTTGATACCCATGGTCACCTGAACAGAGATGCCGACACCATACTGGTGGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp TTGCAACTCTGTGCGAACGAACTTCCTGAGGAGCGCTaGCACAGCATCCGGACGGCTGGTCAGCACCTTGCA +
Preference number: 6 (lower is better)
Translates to: LQLCANELPEER*HSIRTAGQHLA
Trigger: TGCAAGGTGCTGACCAGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp AGCCCTTCAGTTGCAACTCTGTGCGAACGAACTTCCTaGGGAGCGCTGACACAGCATCCGGACGGCTGGTCA +
Preference number: 6 (lower is better)
Translates to: SPSVATLCERTS*GALTQHPDGWS
Trigger: TGACCAGCCGTCCGGATGCTGTGTCAGCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAACTGAAGGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp TCCTCACAATGGCTGGCCGGTGACTCTGCAGGTCTCTaGTTGGATGAAGGGAGTGAGTGTCCCAGGACCCAT +
Preference number: 6 (lower is better)
Translates to: SSQWLAGDSAGL*LDEGSECPRTH
Trigger: ATGGGTCCTGGGACACTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp GGGTCAATTGGAGAGCAGTGGCGCTCCCGGTCGGTGAACCGGAACTaGAACTCGTCCAAGCCATCAAAGGTTAACAGGACACGGTCAGGA +
Preference number: 6 (lower is better)
Translates to: GSIGEQWRSRSVNRN*NSSKPSKVNRTRSG
Trigger: TCCTGACCGTGTCCTGTTAACCTTTGATGGCTTGGACGAGTTCAAGTTCCGGTTCACCGACCGGGAGCGCCACTGCTCTCCAATTGACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GCAGCTGCTCACAGCGAAGAGCACACTCAACCAGCGTaGGGGCACCTCGGTCTGAGATATTGTTATCTCGCA +
Preference number: 6 (lower is better)
Translates to: AAAHSEEHTQPA*GHLGLRYCYLA
Trigger: TGCGAGATAACAATATCTCAGACCGAGGTGCCCGCACGCTGGTTGAGTGTGCTCTTCGCTGTGAGCAGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp GAGATCAGCAGTGCCACCAGCTGGCTCCTCTGTGCCTaGAACTCTTCCTGTGAGCACATGTCACAACAGCTG +
Preference number: 6 (lower is better)
Translates to: EISSATSWLLCA*NSSCEHMSQQL
Trigger: CAGCTGTTGTGACATGTGCTCACAGGAAGAGTTCCAGGCACAGAGGAGCCAGCTGGTGGCACTGCTGATCTC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109634.3
CDS CAA 72 bp TCCCTGACGTGCTGTAGAAGGAAGGCAGCCAGTCCATaGGCCTTCACCGCAGCGAGATCAAGCAGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: SLTCCRRKAASP*AFTAARSSSLL
Trigger: AAGAAGGCTGCTTGATCTCGCTGCGGTGAAGGCCAATGGACTGGCTGCCTTCCTTCTACAGCACGTCAGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp GAGCAGCGTCCTCAGGGACAGCGGTTTGGCCACGCATaGCAACTGTCGGCAGCTGAATGGGAAAATGAAGAG +
Preference number: 6 (lower is better)
Translates to: EQRPQGQRFGHA*QLSAAEWENEE
Trigger: CTCTTCATTTTCCCATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCGCTGTCCCTGAGGACGCTGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp GGAGAGCAGTGGCGCTCCCGGTCGGTGAACCGGAACTaGAACTCGTCCAAGCCATCAAAGGTTAACAGGACA +
Preference number: 6 (lower is better)
Translates to: GEQWRSRSVNRN*NSSKPSKVNRT
Trigger: TGTCCTGTTAACCTTTGATGGCTTGGACGAGTTCAAGTTCCGGTTCACCGACCGGGAGCGCCACTGCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp AGAGTCTCCTCACAATGGCTGGCCGGTGACTCTGCAGGTCTCTGGTaGGATGAAGGGAGTGAGTGTCCCAGGACCCATACAGTTCAAAGG +
Preference number: 6 (lower is better)
Translates to: RVSSQWLAGDSAGLW*DEGSECPRTHTVQR
Trigger: CCTTTGAACTGTATGGGTCCTGGGACACTCACTCCCTTCATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp GTCAGCACCTTGCAGGCATTCTTCAGCAGGTTCCCCTGGAGAAGGTaGAAGAGCAGAGTCTGGACTGACGTGGGGTCAATTGGAGAGCAG +
Preference number: 6 (lower is better)
Translates to: VSTLQAFFSRFPWRR*KSRVWTDVGSIGEQ
Trigger: CTGCTCTCCAATTGACCCCACGTCAGTCCAGACTCTGCTCTTCAACCTTCTCCAGGGGAACCTGCTGAAGAATGCCTGCAAGGTGCTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp CGAAGAGCACACTCAACCAGCGTGCGGGCACCTCGGTCTGAGATATaGTTATCTCGCAAATACAGAGCTGTGCAGACCCCAAGGCACGGT +
Preference number: 6 (lower is better)
Translates to: RRAHSTSVRAPRSEI*LSRKYRAVQTPRHG
Trigger: ACCGTGCCTTGGGGTCTGCACAGCTCTGTATTTGCGAGATAACAATATCTCAGACCGAGGTGCCCGCACGCTGGTTGAGTGTGCTCTTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp AGGAGCTTGGCCATGGAGCAGGCGCACGCATCCGTGAGTTTGTTGTaGAAGAGAGCTAGTTTCTGCAGCTGCTCACAGCGAAGAGCACAC +
Preference number: 6 (lower is better)
Translates to: RSLAMEQAHASVSLL*KRASFCSCSQRRAH
Trigger: GTGTGCTCTTCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTTCAACAACAAACTCACGGATGCGTGCGCCTGCTCCATGGCCAAGCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp TTCCCCACCCTCAGGGACAAGAAGTTCTGCTTGTGTGCAAGGAGCTaGGCCATGGAGCAGGCGCACGCATCCGTGAGTTTGTTGTTGAAG +
Preference number: 6 (lower is better)
Translates to: FPTLRDKKFCLCARS*AMEQAHASVSLLLK
Trigger: CTTCAACAACAAACTCACGGATGCGTGCGCCTGCTCCATGGCCAAGCTCCTTGCACACAAGCAGAACTTCTTGTCCCTGAGGGTGGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp TTCTCCAGCATCAGTGCTAGGGCTTCGGCACCCATGCTGCCAATGTaGTTTCCTACCAGGCTGAGCCACTTTAGGTTCTGGTGGTCGGCT +
Preference number: 6 (lower is better)
Translates to: FSSISARASAPMLPM*FPTRLSHFRFWWSA
Trigger: AGCCGACCACCAGAACCTAAAGTGGCTCAGCCTGGTAGGAAACAACATTGGCAGCATGGGTGCCGAAGCCCTAGCACTGATGCTGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp TTCACCGCAGCGAGATCAAGCAGCCTTCTTGCCCTCTaGGACGACGTGAAGATTGGCAGCCTGATCTCCTCA +
Preference number: 6 (lower is better)
Translates to: FTAARSSSLLAL*DDVKIGSLISS
Trigger: TGAGGAGATCAGGCTGCCAATCTTCACGTCGTCTCAGAGGGCAAGAAGGCTGCTTGATCTCGCTGCGGTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp CTCTTCTGCAAGGCCCCGGCTGTGCCCACTTCAGTCTaGAGCTCCAAGATGTTCTCCGTGTATATATCCTCC +
Preference number: 6 (lower is better)
Translates to: LFCKAPAVPTSV*SSKMFSVYISS
Trigger: GGAGGATATATACACGGAGAACATCTTGGAGCTGCAGACTGAAGTGGGCACAGCCGGGGCCTTGCAGAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp AGCAGCGTCCTCAGGGACAGCGGTTTGGCCACGCATTaGAACTGTCGGCAGCTGAATGGGAAAATGAAGAGA +
Preference number: 6 (lower is better)
Translates to: SSVLRDSGLATH*NCRQLNGKMKR
Trigger: TCTCTTCATTTTCCCATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCGCTGTCCCTGAGGACGCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp AAGCAGCCTTCTTGCCCTCTGAGACGACGTGAAGATTaGCAGCCTGATCTCCTCACACTCGTACTGGCTCAG +
Preference number: 6 (lower is better)
Translates to: KQPSCPLRRRED*QPDLLTLVLAQ
Trigger: CTGAGCCAGTACGAGTGTGAGGAGATCAGGCTGCCAATCTTCACGTCGTCTCAGAGGGCAAGAAGGCTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp ACCCCAGGTTCCCGGTGGTGCTTTCTCAGGTACAGTTaGATGCCCTCTTCAGAGAAGCCCTTCAGTTGCAAC +
Preference number: 6 (lower is better)
Translates to: TPGSRWCFLRYS*MPSSEKPFSCN
Trigger: GTTGCAACTGAAGGGCTTCTCTGAAGAGGGCATCCAACTGTACCTGAGAAAGCACCACCGGGAACCTGGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp AATGCTGCAGGATCAGGAGGTACATGTCCGTGCTGGTaGTTGGGAAGCCCCTGTTCTGCAGCAGAAGTTCCC +
Preference number: 6 (lower is better)
Translates to: NAAGSGGTCPCW*LGSPCSAAEVP
Trigger: GGGAACTTCTGCTGCAGAACAGGGGCTTCCCAACAACCAGCACGGACATGTACCTCCTGATCCTGCAGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp GAACTCCAGGGGCGCCTTGCTCCCGGGCACACTACTTaGGGCACGTACCAGGAAACCAAGAGAAATATCATC +
Preference number: 6 (lower is better)
Translates to: ELQGRLAPGHTT*GTYQETKRNII
Trigger: GATGATATTTCTCTTGGTTTCCTGGTACGTGCCCAAAGTAGTGTGCCCGGGAGCAAGGCGCCCCTGGAGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp GCCATGGAGCAGGCGCACGCATCCGTGAGTTTGTTGTaGAAGAGAGCTAGTTTCTGCAGCTGCTCACAGCGA +
Preference number: 6 (lower is better)
Translates to: AMEQAHASVSLL*KRASFCSCSQR
Trigger: TCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTTCAACAACAAACTCACGGATGCGTGCGCCTGCTCCATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp GTGCTCAAAGAGCAGCGTCCTCAGGGACAGCGGTTTGGCCACGCATaGCAACTGTCGGCAGCTGAATGGGAAAATGAAGAGAAACTCCTG +
Preference number: 6 (lower is better)
Translates to: VLKEQRPQGQRFGHA*QLSAAEWENEEKLL
Trigger: CAGGAGTTTCTCTTCATTTTCCCATTCAGCTGCCGACAGTTGCAATGCGTGGCCAAACCGCTGTCCCTGAGGACGCTGCTCTTTGAGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp CGGCACCCATGCTGCCAATGTTGTTTCCTACCAGGCTaGGCCACTTTAGGTTCTGGTGGTCGGCTACAACTT +
Preference number: 6 (lower is better)
Translates to: RHPCCQCCFLPG*ATLGSGGRLQL
Trigger: AAGTTGTAGCCGACCACCAGAACCTAAAGTGGCTCAGCCTGGTAGGAAACAACATTGGCAGCATGGGTGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp TGGAGAGCACATCCCAAGACAGCAGCCAGTCTAAGATaGTCTCAAAGCCCTCCAAGGACCCTGAGATCAGCA +
Preference number: 6 (lower is better)
Translates to: WRAHPKTAASLR*SQSPPRTLRSA
Trigger: TGCTGATCTCAGGGTCCTTGGAGGGCTTTGAGAGCATCTTAGACTGGCTGCTGTCTTGGGATGTGCTCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp GGCTTCTACATGGTTGTAGAGTCTCCTCACAATGGCTaGCCGGTGACTCTGCAGGTCTCTGGTTGGATGAAG +
Preference number: 6 (lower is better)
Translates to: GFYMVVESPHNG*PVTLQVSGWMK
Trigger: CTTCATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCTACAACCATGTAGAAGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp GCATGGCTTCTACATGGTTGTAGAGTCTCCTCACAATaGCTGGCCGGTGACTCTGCAGGTCTCTGGTTGGAT +
Preference number: 6 (lower is better)
Translates to: AWLLHGCRVSSQ*LAGDSAGLWLD
Trigger: ATCCAACCAGAGACCTGCAGAGTCACCGGCCAGCCATTGTGAGGAGACTCTACAACCATGTAGAAGCCATGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp AACTCCAGGGGCGCCTTGCTCCCGGGCACACTACTTTaGGCACGTACCAGGAAACCAAGAGAAATATCATCA +
Preference number: 6 (lower is better)
Translates to: NSRGALLPGTLL*ARTRKPREISS
Trigger: TGATGATATTTCTCTTGGTTTCCTGGTACGTGCCCAAAGTAGTGTGCCCGGGAGCAAGGCGCCCCTGGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp ATGTTGTTTCCTACCAGGCTGAGCCACTTTAGGTTCTaGTGGTCGGCTACAACTTCAGCCAGGGCTTGGGTG +
Preference number: 6 (lower is better)
Translates to: MLFPTRLSHFRF*WSATTSARAWV
Trigger: CACCCAAGCCCTGGCTGAAGTTGTAGCCGACCACCAGAACCTAAAGTGGCTCAGCCTGGTAGGAAACAACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp GTACAGTTGGATGCCCTCTTCAGAGAAGCCCTTCAGTaGCAACTCTGTGCGAACGAACTTCCTGAGGAGCGC +
Preference number: 6 (lower is better)
Translates to: VQLDALFREALQ*QLCANELPEER
Trigger: GCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTCTCTGAAGAGGGCATCCAACTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp CACTCAACCAGCGTGCGGGCACCTCGGTCTGAGATATaGTTATCTCGCAAATACAGAGCTGTGCAGACCCCA +
Preference number: 6 (lower is better)
Translates to: HSTSVRAPRSEI*LSRKYRAVQTP
Trigger: TGGGGTCTGCACAGCTCTGTATTTGCGAGATAACAATATCTCAGACCGAGGTGCCCGCACGCTGGTTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp TTGGCCATGGAGCAGGCGCACGCATCCGTGAGTTTGTaGTTGAAGAGAGCTAGTTTCTGCAGCTGCTCACAG +
Preference number: 6 (lower is better)
Translates to: LAMEQAHASVSL*LKRASFCSCSQ
Trigger: CTGTGAGCAGCTGCAGAAACTAGCTCTCTTCAACAACAAACTCACGGATGCGTGCGCCTGCTCCATGGCCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 90 bp AATGTGCAGGAACTCCAGGGGCGCCTTGCTCCCGGGCACACTACTTaGGGCACGTACCAGGAAACCAAGAGAAATATCATCAGAGTCAAC +
Preference number: 6 (lower is better)
Translates to: NVQELQGRLAPGHTT*GTYQETKRNIIRVN
Trigger: GTTGACTCTGATGATATTTCTCTTGGTTTCCTGGTACGTGCCCAAAGTAGTGTGCCCGGGAGCAAGGCGCCCCTGGAGTTCCTGCACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp CCTCCAGGCAAAGATTCTCCGACCCATCGTAAGTACTaGGGAAGCGAGACTGAGTCAACACCATGGTCCTCA +
Preference number: 6 (lower is better)
Translates to: PPGKDSPTHRKY*GSETESTPWSS
Trigger: TGAGGACCATGGTGTTGACTCAGTCTCGCTTCCTCAGTACTTACGATGGGTCGGAGAATCTTTGCCTGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp TACAGTTGGATGCCCTCTTCAGAGAAGCCCTTCAGTTaGAACTCTGTGCGAACGAACTTCCTGAGGAGCGCT +
Preference number: 6 (lower is better)
Translates to: YSWMPSSEKPFS*NSVRTNFLRSA
Trigger: AGCGCTCCTCAGGAAGTTCGTTCGCACAGAGTTGCAACTGAAGGGCTTCTCTGAAGAGGGCATCCAACTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GAGATGTTGCAGTACAAAGGCCAGTGCAGCACACTCTaGAGGGCCCACTCTGCAAAATGTCAACTTCAGGTG +
Preference number: 6 (lower is better)
Translates to: EMLQYKGQCSTL*RAHSAKCQLQV
Trigger: CACCTGAAGTTGACATTTTGCAGAGTGGGCCCTGCAGAGTGTGCTGCACTGGCCTTTGTACTGCAACATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GGTCTGAGATATTGTTATCTCGCAAATACAGAGCTGTaGAGACCCCAAGGCACGGTCGCAGCTGTTCCACTC +
Preference number: 6 (lower is better)
Translates to: GLRYCYLANTEL*RPQGTVAAVPL
Trigger: GAGTGGAACAGCTGCGACCGTGCCTTGGGGTCTGCACAGCTCTGTATTTGCGAGATAACAATATCTCAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp AAGAGCACACTCAACCAGCGTGCGGGCACCTCGGTCTaGGATATTGTTATCTCGCAAATACAGAGCTGTGCA +
Preference number: 6 (lower is better)
Translates to: KSTLNQRAGTSV*DIVISQIQSCA
Trigger: TGCACAGCTCTGTATTTGCGAGATAACAATATCTCAGACCGAGGTGCCCGCACGCTGGTTGAGTGTGCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS GCA 72 bp GCATCCGTGAGTTTGTTGTTGAAGAGAGCTAGTTTCTaGAGCTGCTCACAGCGAAGAGCACACTCAACCAGC +
Preference number: 6 (lower is better)
Translates to: ASVSLLLKRASF*SCSQRRAHSTS
Trigger: GCTGGTTGAGTGTGCTCTTCGCTGTGAGCAGCTGCAGAAACTAGCTCTCTTCAACAACAAACTCACGGATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CCA 72 bp CACAACAAGAGTCTGGCGTCCCTGGAGCTCAGTGTTTaGATTTCCTCCAAAGAGAATGTGTTCCCTCGAAGC +
Preference number: 6 (lower is better)
Translates to: HNKSLASLELSV*ISSKENVFPRS
Trigger: GCTTCGAGGGAACACATTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAGGGACGCCAGACTCTTGTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp TCACAACAAGAGTCTGGCGTCCCTGGAGCTCAGTGTTaGGATTTCCTCCAAAGAGAATGTGTTCCCTCGAAG +
Preference number: 6 (lower is better)
Translates to: SQQESGVPGAQC*DFLQRECVPSK
Trigger: CTTCGAGGGAACACATTCTCTTTGGAGGAAATCCAAACACTGAGCTCCAGGGACGCCAGACTCTTGTTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp ATATGGTTTTCCTCTAGGCAGAGTTCCTCTAGTGACTaGTTCTTCTCCAGCATCAGTGCTAGGGCTTCGGCA +
Preference number: 6 (lower is better)
Translates to: IWFSSRQSSSSD*FFSSISARASA
Trigger: TGCCGAAGCCCTAGCACTGATGCTGGAGAAGAACAAGTCACTAGAGGAACTCTGCCTAGAGGAAAACCATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS TCA 72 bp GTCAACACCATGGTCCTCAGCTTAGATATGAACTTCTaGCACTCAGCAGCTAGGATACAGAAGAGGCAAATG +
Preference number: 6 (lower is better)
Translates to: VNTMVLSLDMNF*HSAARIQKRQM
Trigger: CATTTGCCTCTTCTGTATCCTAGCTGCTGAGTGTCAGAAGTTCATATCTAAGCTGAGGACCATGGTGTTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054324.15
CDS CAA 90 bp ATGCCATTGTTGGACAGTTTCAAGAATTTCAAAGTTGAATTTCTCTaGAGTCCTTCTGCGAGAGAATATACCCCTTCGTCACAGATATGG +
Preference number: 6 (lower is better)
Translates to: MPLLDSFKNFKVEFL*SPSAREYTPSSQIW
Trigger: CCATATCTGTGACGAAGGGGTATATTCTCTCGCAGAAGGACTCAAGAGAAATTCAACTTTGAAATTCTTGAAACTGTCCAACAATGGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8
CDS CAA 72 bp TTGGACAGTTTCAAGAATTTCAAAGTTGAATTTCTCTaGAGTCCTTCTGCGAGAGAATATACCCCTTCGTCA +
Preference number: 6 (lower is better)
Translates to: LDSFKNFKVEFL*SPSAREYTPSS
Trigger: TGACGAAGGGGTATATTCTCTCGCAGAAGGACTCAAGAGAAATTCAACTTTGAAATTCTTGAAACTGTCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000054324.15
ENSMUST00000109634.3
ENSMUST00000118370.8