Pregenerated sensors for NOBOX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029736Ensembl transcript IDs: ENSMUST00000031749.16, ENSMUST00000172554.4
Found 90 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAAGGCTGGAAAGACCTTaGACCAACATAGCAGGCCAG | + |
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Preference number: 2 (lower is better) Translates to: YLLHALPRMAVIPHLTFRRLERP*TNIAGQ Trigger: CTGGCCTGCTATGTTGGTCCAAGGTCTTTCCAGCCT...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| 3UTR-3UTR CCA 90 bp | AACCAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGAAGGGGGAAATGAGATaGCAGCTCTCTTCCTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: NQTPSSYCFIYCMHCLGWKGEMR*QLSSFS Trigger: AGAGAAGGAAGAGAGCTGCCATCTCATTTCCCCCTT...CCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| 3UTR CCA 72 bp | CTCTCTTCCTTCTCTAAGCCCAGGCTGGAAAGACCTTaGACCAACATAGCAGGCCAGTCCATAGCCTCTCAC | + |
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Preference number: 3 (lower is better) Translates to: LSSFSKPRLERP*TNIAGQSIASH Trigger: GTGAGAGGCTATGGACTGGCCTGCTATGTTGGTCCAAGGTCTTTCCAGCCTGGGCTTAGAGAAGGAAGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | AGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTCCCGGCAGGGCAGAATCCTaGAGTGGTCCCTCTGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SRPVHSLSHSSGLFFPLPGRAES*SGPSVS Trigger: GGAGACAGAGGGACCACTGCAGGATTCTGCCCTGCC...GGGAAGGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | CAGGCTGGAAAGACCTTGGACCAACATAGCAGGCCAGTCCATAGCCTCTCACATGGATTGGGGACCACATaGGGCTGCTGTGGGGGCTTT | + |
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Preference number: 4 (lower is better) Translates to: QAGKTLDQHSRPVHSLSHGLGTT*GCCGGF Trigger: AAAGCCCCCACAGCAGCCGCATGTGGTCCCCAATCC...ATGTGAGAGGCTATGGACTGGCCTGCTATGTTGGTCCAAGGTCTTTCCAGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTCCCCCAGTGCAGCAGTCCTaGGCTTGTCACCAGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SRPVHSLSHSSGLFFPLPPVQQS*ACHQLP Trigger: AGGAAGCTGGTGACAAGCCCAGGACTGCTGCACTGG...GGGAAGGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | TGGCAGCTCTCTTCCTTCTCTAAGCCCAGGCTGGAAAGACCTTGGACCAACATAGGCTGCTGTCAGCACTaGGGGCTGCAGGACCATTCT | + |
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Preference number: 4 (lower is better) Translates to: WQLSSFSKPRLERPWTNIGCCQH*GLQDHS Trigger: AGAATGGTCCTGCAGCCCCCAGTGCTGACAGCAGCC...TATGTTGGTCCAAGGTCTTTCCAGCCTGGGCTTAGAGAAGGAAGAGAGCTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCCAGATCTGTGCTGGCTaGTGTCAGCACTGGGGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPQICAG*CQHWGL Trigger: CAGCCCCCAGTGCTGACAGCAGCCAGCACAGATCTG...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 54% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTGGGGGACTGAGGAGTaGTGGAGTCACTGCCACCCT | + |
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Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPWGTEE*WSHCHP Trigger: AGGGTGGCAGTGACTCCACCACTCCTCAGTCCCCCA...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCGGCCCTTCGAATAGGTaGGGGACTGAGGAGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPGPSNR*GTEEWW Trigger: CCACCACTCCTCAGTCCCCCACCTATTCGAAGGGCC...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | CAGGCTGGAAAGACCTTGGACCAACATAGCAGGCCAGTCCATAGCCTCTCACATTGGCTTCAGCGATTCTaGCTTTCTCTCTGGGGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: QAGKTLDQHSRPVHSLSHWLQRF*LSLWGR Trigger: TCTCCCCCAGAGAGAAAGGCAGAATCGCTGAAGCCA...ATGTGAGAGGCTATGGACTGGCCTGCTATGTTGGTCCAAGGTCTTTCCAGCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | CAGGCTGGAAAGACCTTGGACCAACATAGCAGGCCAGTCCATAGCCTCTCACATGGTAAATGTGGAGCCTaGGAGAGCTGGAATGAACCC | + |
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Preference number: 4 (lower is better) Translates to: QAGKTLDQHSRPVHSLSHGKCGA*ESWNEP Trigger: GGGTTCATTCCAGCTCTCCCAGGCTCCACATTTACC...ATGTGAGAGGCTATGGACTGGCCTGCTATGTTGGTCCAAGGTCTTTCCAGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | AGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTCCCTTCTCCACTTTGCCCTaGGGTTCTGAAACCACACCA | + |
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Preference number: 4 (lower is better) Translates to: SRPVHSLSHSSGLFFPLPFSTLP*GSETTP Trigger: TGGTGTGGTTTCAGAACCGCAGGGCAAAGTGGAGAA...GGGAAGGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTGTCCCAGAGCCTGTaGGTAGTGTGGACGAGGGAA | + |
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Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPLSQSL*VVWTRE Trigger: TTCCCTCGTCCACACTACCCACAGGCTCTGGGACAA...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR TCA 90 bp | CAGGCTGGAAAGACCTTGGACCAACATAGCAGGCCAGTCCATAGCCTCTCACATTTTGCCCTGCGGTTCTaGAACCACACCATGATTCTT | + |
|
Preference number: 4 (lower is better) Translates to: QAGKTLDQHSRPVHSLSHFALRF*NHTMIL Trigger: AAGAATCATGGTGTGGTTTCAGAACCGCAGGGCAAA...ATGTGAGAGGCTATGGACTGGCCTGCTATGTTGGTCCAAGGTCTTTCCAGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR TCA 90 bp | AGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTCCCCAGATACGGAAACTGTaGCTGAAGGGATGGGAAAAG | + |
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Preference number: 4 (lower is better) Translates to: SRPVHSLSHSSGLFFPLPQIRKL*LKGWEK Trigger: CTTTTCCCATCCCTTCAGTCACAGTTTCCGTATCTG...GGGAAGGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCCACACCATGATTCTTTaGGGGGTTACCCCCACCATC | + |
|
Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPHTMIL*GVTPTI Trigger: GATGGTGGGGGTAACCCCCCAAAGAATCATGGTGTG...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 51% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | TGGCAGCTCTCTTCCTTCTCTAAGCCCAGGCTGGAAAGACCTTGGACCAACATACATGTTTTCAGCAGGTaGCTGCAGCAAGATCTGACC | + |
|
Preference number: 4 (lower is better) Translates to: WQLSSFSKPRLERPWTNIHVFSR*LQQDLT Trigger: GGTCAGATCTTGCTGCAGCCACCTGCTGAAAACATG...TATGTTGGTCCAAGGTCTTTCCAGCCTGGGCTTAGAGAAGGAAGAGAGCTGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTGTCACCAGCTTCCTaGCCCTGCATTTTCTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPLSPAS*PCIFLQ Trigger: CTGCAAGAAAATGCAGGGCCAGGAAGCTGGTGACAA...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCGTTACCCCCACCATCTaGGAAATCTCATGGCGTTTG | + |
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Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPVTPTI*EISWRL Trigger: CAAACGCCATGAGATTTCCCAGATGGTGGGGGTAAC...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR TCA 90 bp | AGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTCCCGTCTTTTTCCGAAATTaGCAGGTCACTTCTAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: SRPVHSLSHSSGLFFPLPVFFRN*QVTSRD Trigger: ATCCCTAGAAGTGACCTGTCAATTTCGGAAAAAGAC...GGGAAGGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR TCA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGGCTGCAGCAAGATCTaGCCTGGTGGGGGTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: YLLHALPRMAVIPHLTFRGCSKI*PGGGPG Trigger: CCCAGGACCCCCACCAGGTCAGATCTTGCTGCAGCC...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | CAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGCAGTCCCTCTGTCTCCAGTaGAGCAGTCCTGGGCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: QTPSSYCFIYCMHCLGWQSLCLQ*SSPGLV Trigger: GACAAGCCCAGGACTGCTGCACTGGAGACAGAGGGA...CTGCCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | AACCAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGGAGTGGTGGAGTCACTaGCACCCTCTCAGCACCCTC | + |
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Preference number: 4 (lower is better) Translates to: NQTPSSYCFIYCMHCLGWEWWSH*HPLSTL Trigger: GAGGGTGCTGAGAGGGTGGCAGTGACTCCACCACTC...CCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCGCTCATCTGACATTTTaGTTAGTGAGGACCCGGTCT | + |
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Preference number: 4 (lower is better) Translates to: NIAGQSIASHILQGYSSPAHLTF*LVRTRS Trigger: AGACCGGGTCCTCACTAAGCAAAATGTCAGATGAGC...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | CAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGCAGGGCTTGGCCAGGGACTaGAGAAATGGATGGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: QTPSSYCFIYCMHCLGWQGLARD*RNGWLQ Trigger: CTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCC...CTGCCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR TCA 90 bp | TTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGTTCTGGGAGAGCTGGAATaGACCCAACTGGCTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LLHALPRMAVIPHLTFRVLGELE*TQLAAC Trigger: GCAAGCAGCCAGTTGGGTTCATTCCAGCTCTCCCAG...AACTCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | CAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGCAGCTTGATCATCCTGGATaGGCAGGGCAGAATCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QTPSSYCFIYCMHCLGWQLDHPG*AGQNPA Trigger: TGCAGGATTCTGCCCTGCCCATCCAGGATGATCAAG...CTGCCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | TTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGTTGGAGCCTGGGAGAGCTaGAATGAACCCAACTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LLHALPRMAVIPHLTFRVGAWES*NEPNWL Trigger: CAGCCAGTTGGGTTCATTCCAGCTCTCCCAGGCTCC...AACTCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | AACCAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGCAGCAAGATCTGACCTaGTGGGGGTCCTGGGCAATA | + |
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Preference number: 4 (lower is better) Translates to: NQTPSSYCFIYCMHCLGWQQDLT*WGSWAI Trigger: TATTGCCCAGGACCCCCACCAGGTCAGATCTTGCTG...CCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAAGCCTGTGGGTAGTGTaGACGAGGGAAGGGAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: YLLHALPRMAVIPHLTFRSLWVV*TREGRF Trigger: GAACCTCCCTTCCCTCGTCCACACTACCCACAGGCT...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGATCAGGAGCAGATCTGTaGTGGCTGCTGTCAGCACTG | + |
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Preference number: 4 (lower is better) Translates to: YLLHALPRMAVIPHLTFRSGADL*WLLSAL Trigger: CAGTGCTGACAGCAGCCAGCACAGATCTGCTCCTGA...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | AACCAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGTGTATATGCTGTCACTaGCAGGAACGTCCCTCATTG | + |
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Preference number: 4 (lower is better) Translates to: NQTPSSYCFIYCMHCLGWCICCH*QERPSL Trigger: CAATGAGGGACGTTCCTGGCAGTGACAGCATATACA...CCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | TTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGTTATGAACCCAACTGGCTaGTTGCTTGGTAGTCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LLHALPRMAVIPHLTFRVMNPTG*LLGSPE Trigger: CTCAGGACTACCAAGCAAGCAGCCAGTTGGGTTCAT...AACTCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR TCA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGATACGGAAACTGTGACTaGAGGGATGGGAAAAGGGGT | + |
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Preference number: 4 (lower is better) Translates to: YLLHALPRMAVIPHLTFRYGNCD*RDGKRG Trigger: ACCCCTTTTCCCATCCCTTCAGTCACAGTTTCCGTA...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGACAGGGACTGCAGAAATaGATGGCTTCAGCGATTCTG | + |
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Preference number: 4 (lower is better) Translates to: YLLHALPRMAVIPHLTFRQGLQK*MASAIL Trigger: CAGAATCGCTGAAGCCATCCATTTCTGCAGTCCCTG...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | TTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGTTATCTGGGAAATCTCATaGCGTTTGTCACTGTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LLHALPRMAVIPHLTFRVIWEIS*RLSLSG Trigger: TCCTGACAGTGACAAACGCCATGAGATTTCCCAGAT...AACTCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR GCA 90 bp | TTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGTTAGGGAAGAGGAAGTCTaGTCATCTGACATTTTGCTT | + |
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Preference number: 4 (lower is better) Translates to: LLHALPRMAVIPHLTFRVREEEV*SSDILL Trigger: AAGCAAAATGTCAGATGAGCAGACTTCCTCTTCCCT...AACTCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CCA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGATTAGCTCCAGCGGCATaGCTATTCTTATTTTTGTCT | + |
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Preference number: 4 (lower is better) Translates to: YLLHALPRMAVIPHLTFRLAPAA*LFLFLS Trigger: AGACAAAAATAAGAATAGCCATGCCGCTGGAGCTAA...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS GCA 90 bp | GGGGACCACATGCGGCTGCTGTGGGGGCTTTGTGCACTCTGCACGTaGCAGCATCCATTAACTCCTCAGAGGTCTTCGACAGTGGCCTCT | + |
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Preference number: 5 (lower is better) Translates to: GDHMRLLWGLCALCT*QHPLTPQRSSTVAS Trigger: AGAGGCCACTGTCGAAGACCTCTGAGGAGTTAATGGATGCTGGCACGTGCAGAGTGCACAAAGCCCCCACAGCAGCCGCATGTGGTCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS GCA 90 bp | CGGATTGGGGACCACATGCGGCTGCTGTGGGGGCTTTGTGCACTCTaGACGTGCCAGCATCCATTAACTCCTCAGAGGTCTTCGACAGTG | + |
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Preference number: 5 (lower is better) Translates to: RIGDHMRLLWGLCAL*TCQHPLTPQRSSTV Trigger: CACTGTCGAAGACCTCTGAGGAGTTAATGGATGCTGGCACGTGCAGAGTGCACAAAGCCCCCACAGCAGCCGCATGTGGTCCCCAATCCG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS CCA 90 bp | GGGCAGAATCCTGCAGTGGTCCCTCTGTCTCCAGTGCAGCAGTCCTaGGCTTGTCACCAGCTTCCTGGCCCTGCATTTTCTTGCAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: GQNPAVVPLSPVQQS*ACHQLPGPAFSCRA Trigger: AGCTCTGCAAGAAAATGCAGGGCCAGGAAGCTGGTGACAAGCCCAGGACTGCTGCACTGGAGACAGAGGGACCACTGCAGGATTCTGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS CCA 90 bp | TTGAACAGGACCCAGAGGAAGAGGAAGGTTGGCCCTTCGAATAGGTaGGGGACTGAGGAGTGGTGGAGTCACTGCCACCCTCTCAGCACC | + |
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Preference number: 5 (lower is better) Translates to: LNRTQRKRKVGPSNR*GTEEWWSHCHPLST Trigger: GGTGCTGAGAGGGTGGCAGTGACTCCACCACTCCTCAGTCCCCCACCTATTCGAAGGGCCAACCTTCCTCTTCCTCTGGGTCCTGTTCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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| CDS TCA 90 bp | AGAGGTCTTCGACAGTGGCCTCTTCCCCAAGCTAGCCCTGGGGAGTaGGGACTGCTTGTCTTGATCATCCTGGATGGGCAGGGCAGAATC | + |
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Preference number: 5 (lower is better) Translates to: RGLRQWPLPQASPGE*GLLVLIILDGQGRI Trigger: GATTCTGCCCTGCCCATCCAGGATGATCAAGACAAGCAGTCCTCACTCCCCAGGGCTAGCTTGGGGAAGAGGCCACTGTCGAAGACCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS CCA 90 bp | GATTCTGCCTTTCTCTCTGGGGGAGAACAACCTTCTTCCTCGGATTaGGGACCACATGCGGCTGCTGTGGGGGCTTTGTGCACTCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: DSAFLSGGEQPSSSD*GPHAAAVGALCTLH Trigger: GTGCAGAGTGCACAAAGCCCCCACAGCAGCCGCATGTGGTCCCCAATCCGAGGAAGAAGGTTGTTCTCCCCCAGAGAGAAAGGCAGAATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS CCA 90 bp | GTTGAGGGAACCGGCGGTGGCTTGGCCAGGGACTGCAGAAATGGATaGCTTCAGCGATTCTGCCTTTCTCTCTGGGGGAGAACAACCTTC | + |
|
Preference number: 5 (lower is better) Translates to: VEGTGGGLARDCRNG*LQRFCLSLWGRTTF Trigger: GAAGGTTGTTCTCCCCCAGAGAGAAAGGCAGAATCGCTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGTTCCCTCAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS CCA 90 bp | TTGTCCCAGAGCCTGTGGGTAGTGTGGACGAGGGAAGGGAGGTTCTaGCAAGCAATGGCCACTCCAGGGTCCTGTACCCATGTTTTCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LSQSLWVVWTREGRF*QAMATPGSCTHVFS Trigger: GCTGAAAACATGGGTACAGGACCCTGGAGTGGCCATTGCTTGCCAGAACCTCCCTTCCCTCGTCCACACTACCCACAGGCTCTGGGACAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS-3UTR CAA 90 bp | AGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTCCCGGAACCGGCGGTGGCTaGGCCAGGGACTGCAGAAAT | + |
|
Preference number: 5 (lower is better) Translates to: SRPVHSLSHSSGLFFPLPGTGGG*ARDCRN Trigger: ATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGTTCC...GGGAAGGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS GCA 90 bp | GGTGGCTTGGCCAGGGACTGCAGAAATGGATGGCTTCAGCGATTCTaGCTTTCTCTCTGGGGGAGAACAACCTTCTTCCTCGGATTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: GGLARDCRNGWLQRF*LSLWGRTTFFLGLG Trigger: CCCCAATCCGAGGAAGAAGGTTGTTCTCCCCCAGAGAGAAAGGCAGAATCGCTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS CCA 90 bp | AGGTCTGTAGGCATAGGGTCTAGGAGCTCAGGAGCAGATCTGTGCTaGCTGCTGTCAGCACTGGGGGCTGCAGGACCATTCTTAGTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: RSVGIGSRSSGADLC*LLSALGAAGPFLVS Trigger: GGAAACTAAGAATGGTCCTGCAGCCCCCAGTGCTGACAGCAGCCAGCACAGATCTGCTCCTGAGCTCCTAGACCCTATGCCTACAGACCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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| CDS GCA 90 bp | TCTAGGTCTGTAGGCATAGGGTCTAGGAGCTCAGGAGCAGATCTGTaGTGGCTGCTGTCAGCACTGGGGGCTGCAGGACCATTCTTAGTT | + |
|
Preference number: 5 (lower is better) Translates to: SRSVGIGSRSSGADL*WLLSALGAAGPFLV Trigger: AACTAAGAATGGTCCTGCAGCCCCCAGTGCTGACAGCAGCCAGCACAGATCTGCTCCTGAGCTCCTAGACCCTATGCCTACAGACCTAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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| CDS TCA 90 bp | AGGTCACTTCTAGGGATTCTTTCTTCAGGTCCCCTTCATGAGAGTTaGGGGAACCGGCGGTGGCTTGGCCAGGGACTGCAGAAATGGATG | + |
|
Preference number: 5 (lower is better) Translates to: RSLLGILSSGPLHES*GNRRWLGQGLQKWM Trigger: CATCCATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGTTCCCTCAACTCTCATGAAGGGGACCTGAAGAAAGAATCCCTAGAAGTGACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS-3UTR CAA 90 bp | AGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTTCCCCAGGAACGTCCCTCATaGGAGGCAGTACTTGAGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SRPVHSLSHSSGLFFPLPQERPS*EAVLEE Trigger: CTCCTCAAGTACTGCCTCCAATGAGGGACGTTCCTG...GGGAAGGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS GCA 90 bp | TCTCTGACCTCCTCTAGTGCGGGCTGCTCGAGGGAAGAGGAAGTCTaGTCATCTGACATTTTGCTTAGTGAGGACCCGGTCTCTACTCTA | + |
|
Preference number: 5 (lower is better) Translates to: SLTSSSAGCSREEEV*SSDILLSEDPVSTL Trigger: TAGAGTAGAGACCGGGTCCTCACTAAGCAAAATGTCAGATGAGCAGACTTCCTCTTCCCTCGAGCAGCCCGCACTAGAGGAGGTCAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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| CDS-3UTR CAA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCTGGCCCTGCATTTTCTaGCAGAGCTTCTCCGTAGGT | + |
|
Preference number: 5 (lower is better) Translates to: NIAGQSIASHILQGYSSPWPCIF*QSFSVG Trigger: ACCTACGGAGAAGCTCTGCAAGAAAATGCAGGGCCA...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS-3UTR CAA 90 bp | AACATAGCAGGCCAGTCCATAGCCTCTCACATTCTTCAGGGTTATTCTTCCCCCCAGTACTTGAGGAGTTaGAACAGGACCCAGAGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: NIAGQSIASHILQGYSSPQYLRS*NRTQRK Trigger: CTTCCTCTGGGTCCTGTTCAAACTCCTCAAGTACTG...GGGGGAAGAATAACCCTGAAGAATGTGAGAGGCTATGGACTGGCCTGCTATGTT 50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS TCA 90 bp | ATAGTGGTCTTCCTGAAATATCCTCTCCAGTTCTTCCAGCTGGTCTaGGCGGTACAGGGTTCGGGTCTTTTTCCGAAATTGACAGGTCAC | + |
|
Preference number: 5 (lower is better) Translates to: IVVFLKYPLQFFQLV*AVQGSGLFPKLTGH Trigger: GTGACCTGTCAATTTCGGAAAAAGACCCGAACCCTGTACCGCTCAGACCAGCTGGAAGAACTGGAGAGGATATTTCAGGAAGACCACTAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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| CDS GCA 90 bp | GCATGGCTATTCTTATTTTTGTCTCTGACCTCCTCTAGTGCGGGCTaGTCGAGGGAAGAGGAAGTCTGCTCATCTGACATTTTGCTTAGT | + |
|
Preference number: 5 (lower is better) Translates to: AWLFLFLSLTSSSAG*SREEEVCSSDILLS Trigger: ACTAAGCAAAATGTCAGATGAGCAGACTTCCTCTTCCCTCGAGCAGCCCGCACTAGAGGAGGTCAGAGACAAAAATAAGAATAGCCATGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS-3UTR CAA 90 bp | CAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGCAGTGCTCATCTGACATTTaGCTTAGTGAGGACCCGGTC | + |
|
Preference number: 5 (lower is better) Translates to: QTPSSYCFIYCMHCLGWQCSSDI*LSEDPV Trigger: GACCGGGTCCTCACTAAGCAAAATGTCAGATGAGCA...CTGCCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS-3UTR CAA 90 bp | TTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGTTCATTGGAGGCAGTACTaGAGGAGTTTGAACAGGACC | + |
|
Preference number: 5 (lower is better) Translates to: LLHALPRMAVIPHLTFRVHWRQY*RSLNRT Trigger: GGTCCTGTTCAAACTCCTCAAGTACTGCCTCCAATG...AACTCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS-3UTR CAA 90 bp | TATTTATTGCATGCACTGCCTAGGATGGCAGTAATACCACATTTAACGTTTAGAGAAATGGCATTGAGCTaGGGATGGGGTAAGGGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: YLLHALPRMAVIPHLTFREMALS*GWGKGR Trigger: CCTTCCCTTACCCCATCCCAAGCTCAATGCCATTTC...TCTAAACGTTAAATGTGGTATTACTGCCATCCTAGGCAGTGCATGCAATAAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS-3UTR CAA 90 bp | CAAACACCCAGTAGTTACTGTTTTATTTATTGCATGCACTGCCTAGGATGGCAGTGGCTATTCTTATTTTaGTCTCTGACCTCCTCTAGT | + |
|
Preference number: 5 (lower is better) Translates to: QTPSSYCFIYCMHCLGWQWLFLF*SLTSSS Trigger: ACTAGAGGAGGTCAGAGACAAAAATAAGAATAGCCA...CTGCCATCCTAGGCAGTGCATGCAATAAATAAAACAGTAACTACTGGGTGTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS GCA 72 bp | CAGGGCAGAATCCTGCAGTGGTCCCTCTGTCTCCAGTaGAGCAGTCCTGGGCTTGTCACCAGCTTCCTGGCC | + |
|
Preference number: 6 (lower is better) Translates to: QGRILQWSLCLQ*SSPGLVTSFLA Trigger: GGCCAGGAAGCTGGTGACAAGCCCAGGACTGCTGCACTGGAGACAGAGGGACCACTGCAGGATTCTGCCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS GCA 72 bp | ACAACCTTCTTCCTCGGATTGGGGACCACATGCGGCTaGTGTGGGGGCTTTGTGCACTCTGCACGTGCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: TTFFLGLGTTCG*CGGFVHSARAS Trigger: GCTGGCACGTGCAGAGTGCACAAAGCCCCCACAGCAGCCGCATGTGGTCCCCAATCCGAGGAAGAAGGTTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS TCA 72 bp | CGACAGTGGCCTCTTCCCCAAGCTAGCCCTGGGGAGTaGGGACTGCTTGTCTTGATCATCCTGGATGGGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RQWPLPQASPGE*GLLVLIILDGQ Trigger: CTGCCCATCCAGGATGATCAAGACAAGCAGTCCTCACTCCCCAGGGCTAGCTTGGGGAAGAGGCCACTGTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS GCA 72 bp | GGGAGAACAACCTTCTTCCTCGGATTGGGGACCACATaGGGCTGCTGTGGGGGCTTTGTGCACTCTGCACGT | + |
|
Preference number: 6 (lower is better) Translates to: GRTTFFLGLGTT*GCCGGFVHSAR Trigger: ACGTGCAGAGTGCACAAAGCCCCCACAGCAGCCGCATGTGGTCCCCAATCCGAGGAAGAAGGTTGTTCTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS CCA 72 bp | ACCGGCGGTGGCTTGGCCAGGGACTGCAGAAATGGATaGCTTCAGCGATTCTGCCTTTCTCTCTGGGGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: TGGGLARDCRNG*LQRFCLSLWGR Trigger: TCTCCCCCAGAGAGAAAGGCAGAATCGCTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS CCA 72 bp | ACCCAGAGGAAGAGGAAGGTTGGCCCTTCGAATAGGTaGGGGACTGAGGAGTGGTGGAGTCACTGCCACCCT | + |
|
Preference number: 6 (lower is better) Translates to: TQRKRKVGPSNR*GTEEWWSHCHP Trigger: AGGGTGGCAGTGACTCCACCACTCCTCAGTCCCCCACCTATTCGAAGGGCCAACCTTCCTCTTCCTCTGGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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| CDS CAA 72 bp | GTCCCCTTCATGAGAGTTGAGGGAACCGGCGGTGGCTaGGCCAGGGACTGCAGAAATGGATGGCTTCAGCGA | + |
|
Preference number: 6 (lower is better) Translates to: VPFMRVEGTGGG*ARDCRNGWLQR Trigger: TCGCTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGTTCCCTCAACTCTCATGAAGGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS TCA 72 bp | CCCAAGCTAGCCCTGGGGAGTGAGGACTGCTTGTCTTaGTCATCCTGGATGGGCAGGGCAGAATCCTGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: PKLALGSEDCLS*SSWMGRAESCS Trigger: ACTGCAGGATTCTGCCCTGCCCATCCAGGATGATCAAGACAAGCAGTCCTCACTCCCCAGGGCTAGCTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS GCA 72 bp | GACCACATGCGGCTGCTGTGGGGGCTTTGTGCACTCTaGACGTGCCAGCATCCATTAACTCCTCAGAGGTCT | + |
|
Preference number: 6 (lower is better) Translates to: DHMRLLWGLCAL*TCQHPLTPQRS Trigger: AGACCTCTGAGGAGTTAATGGATGCTGGCACGTGCAGAGTGCACAAAGCCCCCACAGCAGCCGCATGTGGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS CCA 72 bp | TTGATCATCCTGGATGGGCAGGGCAGAATCCTGCAGTaGTCCCTCTGTCTCCAGTGCAGCAGTCCTGGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: LIILDGQGRILQ*SLCLQCSSPGL Trigger: AAGCCCAGGACTGCTGCACTGGAGACAGAGGGACCACTGCAGGATTCTGCCCTGCCCATCCAGGATGATCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS CCA 72 bp | TTTCTCTCTGGGGGAGAACAACCTTCTTCCTCGGATTaGGGACCACATGCGGCTGCTGTGGGGGCTTTGTGC | + |
|
Preference number: 6 (lower is better) Translates to: FLSGGEQPSSSD*GPHAAAVGALC Trigger: GCACAAAGCCCCCACAGCAGCCGCATGTGGTCCCCAATCCGAGGAAGAAGGTTGTTCTCCCCCAGAGAGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS CCA 72 bp | AAGGTTGGCCCTTCGAATAGGTGGGGGACTGAGGAGTaGTGGAGTCACTGCCACCCTCTCAGCACCCTCATT | + |
|
Preference number: 6 (lower is better) Translates to: KVGPSNRWGTEE*WSHCHPLSTLI Trigger: AATGAGGGTGCTGAGAGGGTGGCAGTGACTCCACCACTCCTCAGTCCCCCACCTATTCGAAGGGCCAACCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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| CDS GCA 72 bp | ATGCGGCTGCTGTGGGGGCTTTGTGCACTCTGCACGTaGCAGCATCCATTAACTCCTCAGAGGTCTTCGACA | + |
|
Preference number: 6 (lower is better) Translates to: MRLLWGLCALCT*QHPLTPQRSST Trigger: TGTCGAAGACCTCTGAGGAGTTAATGGATGCTGGCACGTGCAGAGTGCACAAAGCCCCCACAGCAGCCGCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS GCA 72 bp | AGAGTTGAGGGAACCGGCGGTGGCTTGGCCAGGGACTaGAGAAATGGATGGCTTCAGCGATTCTGCCTTTCT | + |
|
Preference number: 6 (lower is better) Translates to: RVEGTGGGLARD*RNGWLQRFCLS Trigger: AGAAAGGCAGAATCGCTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGTTCCCTCAACTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS CCA 72 bp | TCCAGTGCAGCAGTCCTGGGCTTGTCACCAGCTTCCTaGCCCTGCATTTTCTTGCAGAGCTTCTCCGTAGGT | + |
|
Preference number: 6 (lower is better) Translates to: SSAAVLGLSPAS*PCIFLQSFSVG Trigger: ACCTACGGAGAAGCTCTGCAAGAAAATGCAGGGCCAGGAAGCTGGTGACAAGCCCAGGACTGCTGCACTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS CCA 72 bp | TGGGGAGTGAGGACTGCTTGTCTTGATCATCCTGGATaGGCAGGGCAGAATCCTGCAGTGGTCCCTCTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: WGVRTACLDHPG*AGQNPAVVPLS Trigger: AGACAGAGGGACCACTGCAGGATTCTGCCCTGCCCATCCAGGATGATCAAGACAAGCAGTCCTCACTCCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
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| CDS CCA 72 bp | GTTGGCCCTTCGAATAGGTGGGGGACTGAGGAGTGGTaGAGTCACTGCCACCCTCTCAGCACCCTCATTATT | + |
|
Preference number: 6 (lower is better) Translates to: VGPSNRWGTEEW*SHCHPLSTLII Trigger: AATAATGAGGGTGCTGAGAGGGTGGCAGTGACTCCACCACTCCTCAGTCCCCCACCTATTCGAAGGGCCAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS CAA 90 bp | TTTCTTCAGGTCCCCTTCATGAGAGTTGAGGGAACCGGCGGTGGCTaGGCCAGGGACTGCAGAAATGGATGGCTTCAGCGATTCTGCCTT | + |
|
Preference number: 6 (lower is better) Translates to: FLQVPFMRVEGTGGG*ARDCRNGWLQRFCL Trigger: AAGGCAGAATCGCTGAAGCCATCCATTTCTGCAGTCCCTGGCCAAGCCACCGCCGGTTCCCTCAACTCTCATGAAGGGGACCTGAAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS GCA 72 bp | TCGAATAGGTGGGGGACTGAGGAGTGGTGGAGTCACTaGCACCCTCTCAGCACCCTCATTATTCTGAAAGGG | + |
|
Preference number: 6 (lower is better) Translates to: SNRWGTEEWWSH*HPLSTLIILKG Trigger: CCCTTTCAGAATAATGAGGGTGCTGAGAGGGTGGCAGTGACTCCACCACTCCTCAGTCCCCCACCTATTCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS GCA 72 bp | TCCTCTAGTGCGGGCTGCTCGAGGGAAGAGGAAGTCTaGTCATCTGACATTTTGCTTAGTGAGGACCCGGTC | + |
|
Preference number: 6 (lower is better) Translates to: SSSAGCSREEEV*SSDILLSEDPV Trigger: GACCGGGTCCTCACTAAGCAAAATGTCAGATGAGCAGACTTCCTCTTCCCTCGAGCAGCCCGCACTAGAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS TCA 72 bp | GGAGTCACTGCCACCCTCTCAGCACCCTCATTATTCTaGAAGGGGGTCAGAGTCTGTTCAGAAGTCAGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: GVTATLSAPSLF*KGVRVCSEVSS Trigger: GCTGCTGACTTCTGAACAGACTCTGACCCCCTTTCAGAATAATGAGGGTGCTGAGAGGGTGGCAGTGACTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS GCA 72 bp | AGGACACATAGGCCTTGTCCTTGTATATGCTGTCACTaGCAGGAACGTCCCTCATTGGAGGCAGTACTTGAG | + |
|
Preference number: 6 (lower is better) Translates to: RTHRPCPCICCH*QERPSLEAVLE Trigger: CTCAAGTACTGCCTCCAATGAGGGACGTTCCTGGCAGTGACAGCATATACAAGGACAAGGCCTATGTGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS CCA 72 bp | CTTGTATATGCTGTCACTGCCAGGAACGTCCCTCATTaGAGGCAGTACTTGAGGAGTTTGAACAGGACCCAG | + |
|
Preference number: 6 (lower is better) Translates to: LVYAVTARNVPH*RQYLRSLNRTQ Trigger: CTGGGTCCTGTTCAAACTCCTCAAGTACTGCCTCCAATGAGGGACGTTCCTGGCAGTGACAGCATATACAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS CAA 72 bp | TACTCTTTAGCTCCAGCGGCATGGCTATTCTTATTTTaGTCTCTGACCTCCTCTAGTGCGGGCTGCTCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: YSLAPAAWLFLF*SLTSSSAGCSR Trigger: CCTCGAGCAGCCCGCACTAGAGGAGGTCAGAGACAAAAATAAGAATAGCCATGCCGCTGGAGCTAAAGAGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS CAA 72 bp | GACCCGGTCTCTACTCTAGTGCCTTCGAGAAGCCCATaGAGGCCTAATGAAGACTGCTTACTCATAGTCAGA | + |
|
Preference number: 6 (lower is better) Translates to: DPVSTLVPSRSP*RPNEDCLLIVR Trigger: TCTGACTATGAGTAAGCAGTCTTCATTAGGCCTCAATGGGCTTCTCGAAGGCACTAGAGTAGAGACCGGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS TCA 72 bp | TCTGAGCGGTACAGGGTTCGGGTCTTTTTCCGAAATTaGCAGGTCACTTCTAGGGATTCTTTCTTCAGGTCC | + |
|
Preference number: 6 (lower is better) Translates to: SERYRVRVFFRN*QVTSRDSFFRS Trigger: GGACCTGAAGAAAGAATCCCTAGAAGTGACCTGTCAATTTCGGAAAAAGACCCGAACCCTGTACCGCTCAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031749.16 |
||
| CDS TCA 72 bp | TTCCTGAAATATCCTCTCCAGTTCTTCCAGCTGGTCTaGGCGGTACAGGGTTCGGGTCTTTTTCCGAAATTG | + |
|
Preference number: 6 (lower is better) Translates to: FLKYPLQFFQLV*AVQGSGLFPKL Trigger: CAATTTCGGAAAAAGACCCGAACCCTGTACCGCTCAGACCAGCTGGAAGAACTGGAGAGGATATTTCAGGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
||
| CDS GCA 72 bp | GTGCCTTCGAGAAGCCCATTGAGGCCTAATGAAGACTaGTTACTCATAGTCAGAGCATATGGAGTTGGCAAT | + |
|
Preference number: 6 (lower is better) Translates to: VPSRSPLRPNED*LLIVRAYGVGN Trigger: ATTGCCAACTCCATATGCTCTGACTATGAGTAAGCAGTCTTCATTAGGCCTCAATGGGCTTCTCGAAGGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031749.16 ENSMUST00000172554.4 |
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