Pregenerated sensors for NOB1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003848Ensembl transcript IDs: ENSMUST00000003946.9, ENSMUST00000165266.2, ENSMUST00000169311.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGAACATTGAGTTTATTAGAAAAAGATTTGGCTACTTCTTCCTTTaGACTTCAAGGCTCAACATTGGCTCCGAGGCGCCCTCTTTTCTG | + |
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Preference number: 1 (lower is better) Translates to: LNIEFIRKRFGYFFL*TSRLNIGSEAPSFL Trigger: CAGAAAAGAGGGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTTTTTCTAATAAACTCAATGTTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGCTCCCTTTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACACAGCCTCAGGCAGTTaGGAAAGCCAGGCCTACTGC | + |
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Preference number: 2 (lower is better) Translates to: QAPFPRWGGVLVLRIHRHTASGS*ESQAYC Trigger: GCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGT...GTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR TCA 90 bp | GGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGAGGCAGCAAACAGCCTCAGGCAGTTaGGAAAGCCAGGCCTACTGC | + |
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Preference number: 2 (lower is better) Translates to: GGVLVLRIHRHGSHMRQQTASGS*ESQAYC Trigger: GCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGT...TTGCTGCCTCATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR GCA 90 bp | CATGAGGCAGCAATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTAGGGTTTCGGGAGAAATaGATGTGCAAGGTCCCATCG | + |
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Preference number: 2 (lower is better) Translates to: HEAAMLRNSLRQLRKPGLGFREK*MCKVPS Trigger: CGATGGGACCTTGCACATGCATTTCTCCCGAAACCC...TAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCTGCCTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169311.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCTCCCTTTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGCTCCTCTTAACTAGCTaGAGTCTGCTTTGCATGCAG | + |
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Preference number: 2 (lower is better) Translates to: KLPFHGGVESWFCVFTGTLLLTS*SLLCMQ Trigger: CTGCATGCAAAGCAGACTGCAGCTAGTTAAGAGGAG...CGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGTGCCCCCTTTTGGAGTaGGTAGTGAGTACCGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: KDLATSSFELQGSTLAPRCPLLE*VVSTGG Trigger: GCCTCCGGTACTCACTACCCACTCCAAAAGGGGGCA...CCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000169311.8 |
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| 3UTR-3UTR GCA 90 bp | GAAAAAGATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGCACATGAGGCAGCAATaGTGCGCAACAGCCTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: EKDLATSSFELQGSTLAPHMRQQ*CATASG Trigger: GCCTGAGGCTGTTGCGCAGCATTGCTGCCTCATGTG...CGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTTTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR GCA 90 bp | AAGATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGCCTCCTCTTAACTAGCTaGAGTCTGCTTTGCATGCAG | + |
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Preference number: 2 (lower is better) Translates to: KIWLLLPLNFKAQHWLRGLLLTS*SLLCMQ Trigger: CTGCATGCAAAGCAGACTGCAGCTAGTTAAGAGGAG...GCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR GCA 90 bp | AAGATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGCGAAAGCCAGGCCTACTaGTTCTGTCTAGATGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: KIWLLLPLNFKAQHWLRGESQAY*FCLDGL Trigger: CAAACCATCTAGACAGAAGCAGTAGGCCTGGCTTTC...GCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR GCA 90 bp | ATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGCGCCTTTGCATGCAGGGCTTaGAATGTCACCTTTTCTTTA | + |
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Preference number: 2 (lower is better) Translates to: IWLLLPLNFKAQHWLRGAFACRA*NVTFSL Trigger: TAAAGAAAAGGTGACATTGCAAGCCCTGCATGCAAA...GGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169311.8 |
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| 3UTR-3UTR GCA 90 bp | AACACAGAGGAGCTGAACATTGAGTTTATTAGAAAAAGATTTGGCTACTTCTTCGAAAGCCAGGCCTACTaGTTCTGTCTAGATGGTTTG | + |
|
Preference number: 2 (lower is better) Translates to: NTEELNIEFIRKRFGYFFESQAY*FCLDGL Trigger: CAAACCATCTAGACAGAAGCAGTAGGCCTGGCTTTC...GAAGAAGTAGCCAAATCTTTTTCTAATAAACTCAATGTTCAGCTCCTCTGTGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR CCA 72 bp | GCGCCCTCTTTTCTGCTTCAAGCTCCCTTTCCACGGTaGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: APSFLLQAPFPR*GGVLVLRIHRH Trigger: GTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGCTTGAAGCAGAAAAGAGGGCGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR CAA 90 bp | GGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGAGGCAGCAAAACAGCCTCAGGCAGTaGAGAAAGCCAGGCCTACTG | + |
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Preference number: 3 (lower is better) Translates to: GGVLVLRIHRHGSHMRQQNSLRQ*RKPGLL Trigger: CAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTT...TTGCTGCCTCATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR CCA 72 bp | CTCTTTTCTGCTTCAAGCTCCCTTTCCACGGTGGGGTaGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAG | + |
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Preference number: 3 (lower is better) Translates to: LFSASSSLSTVG*SPGSAYSQARQ Trigger: CTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGCTTGAAGCAGAAAAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR CAA 90 bp | GTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGAGGCAGCAATGCTGCCGTATTTGCCCCCTTTaGGAGTGGGTAGTGAGTACC | + |
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Preference number: 3 (lower is better) Translates to: VLVLRIHRHGSHMRQQCCRICPL*EWVVST Trigger: GGTACTCACTACCCACTCCAAAAGGGGGCAAATACG...GCAGCATTGCTGCCTCATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000169311.8 |
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| 3UTR-3UTR CAA 90 bp | TTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGCGCCCTAACAGCCTCAGGCAGTaGAGAAAGCCAGGCCTACTG | + |
|
Preference number: 3 (lower is better) Translates to: LATSSFELQGSTLAPRRPNSLRQ*RKPGLL Trigger: CAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTT...AGGGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR CCA 72 bp | TGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTaGCTCCGAGGCGCCCTCTTTTCTGCTTCAAGCTCC | + |
|
Preference number: 3 (lower is better) Translates to: WLLLPLNFKAQH*LRGALFSASSS Trigger: GGAGCTTGAAGCAGAAAAGAGGGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR CAA 90 bp | TTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGCGCCCTTGGCTACTTCTTCCTTaGAACTTCAAGGCTCAACAT | + |
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Preference number: 3 (lower is better) Translates to: LATSSFELQGSTLAPRRPWLLLP*NFKAQH Trigger: ATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCA...AGGGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| 3UTR-3UTR CAA 90 bp | ATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGCGCCCTTTGCATGCAGGGCTaGCAATGTCACCTTTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: IWLLLPLNFKAQHWLRGALCMQG*QCHLFF Trigger: AAAGAAAAGGTGACATTGCAAGCCCTGCATGCAAAG...GGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169311.8 |
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| 3UTR GCA 72 bp | TACTGCAGCCTCCTCTTAACTAGCTGCAGTCTGCTTTaGATGCAGGGCTTGCAATGTCACCTTTTCTTTACA | + |
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Preference number: 3 (lower is better) Translates to: YCSLLLTSCSLL*MQGLQCHLFFT Trigger: TGTAAAGAAAAGGTGACATTGCAAGCCCTGCATGCAAAGCAGACTGCAGCTAGTTAAGAGGAGGCTGCAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169311.8 |
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| 3UTR TCA 72 bp | GAGTTTATTAGAAAAAGATTTGGCTACTTCTTCCTTTaGACTTCAAGGCTCAACATTGGCTCCGAGGCGCCC | + |
|
Preference number: 3 (lower is better) Translates to: EFIRKRFGYFFL*TSRLNIGSEAP Trigger: GGGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTTTTTCTAATAAACTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | AAGCTCCCTTTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGCTGGTAGGGCAGCACTaGCAGCCGCCTGCGCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: KLPFHGGVESWFCVFTGTLVGQH*QPPARG Trigger: GCCACGCGCAGGCGGCTGGCAGTGCTGCCCTACCAG...CGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR CCA 90 bp | GCTCCCTTTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCCCAGCCGCCTGCGCGTaGCCTTGTCGCGAATCTCTC | + |
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Preference number: 4 (lower is better) Translates to: APFPRWGGVLVLRIHRHGPAACA*PCRESL Trigger: GAGAGATTCGCGACAAGGCCACGCGCAGGCGGCTGG...GCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR CCA 90 bp | CCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGCCAGCCGCCTGCGCGTaGCCTTGTCGCGAATCTCTC | + |
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Preference number: 4 (lower is better) Translates to: PRWGGVLVLRIHRHGSHMPAACA*PCRESL Trigger: GAGAGATTCGCGACAAGGCCACGCGCAGGCGGCTGG...CATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | CATGAGGCAGCAATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTAGCACTGCCAGCCGCCTaGGCGTGGCCTTGTCGCGAA | + |
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Preference number: 4 (lower is better) Translates to: HEAAMLRNSLRQLRKPGLALPAA*AWPCRE Trigger: TTCGCGACAAGGCCACGCGCAGGCGGCTGGCAGTGC...TAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCTGCCTCATG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | GAGACACCCCGACAAATTCTGCTTCCAGCTGGTAAGTCAGAGCCAGCACCTGGACTGGTAGGGCAGCACTaGCAGCCGCCTGCGCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: ETPRQILLPAGKSEPAPGLVGQH*QPPARG Trigger: GCCACGCGCAGGCGGCTGGCAGTGCTGCCCTACCAG...TCCAGGTGCTGGCTCTGACTTACCAGCTGGAAGCAGAATTTGTCGGGGTGTCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165266.2 |
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| CDS-3UTR GCA 90 bp | AATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTACTGCTTCTGTCCTGGTAGGGCAGCACTaGCAGCCGCCTGCGCGTGGC | + |
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Preference number: 4 (lower is better) Translates to: NAAQQPQAVEKARPTASVLVGQH*QPPARG Trigger: GCCACGCGCAGGCGGCTGGCAGTGCTGCCCTACCAG...GACAGAAGCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | AATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTACTGCTTCTGTCGCACTGCCAGCCGCCTaGGCGTGGCCTTGTCGCGAA | + |
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Preference number: 4 (lower is better) Translates to: NAAQQPQAVEKARPTASVALPAA*AWPCRE Trigger: TTCGCGACAAGGCCACGCGCAGGCGGCTGGCAGTGC...GACAGAAGCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | CTCCCTTTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCACCTCTCGGACCAGCATaGCGTTCACCGCCAACACGT | + |
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Preference number: 4 (lower is better) Translates to: LPFHGGVESWFCVFTGTAPLGPA*RSPPTR Trigger: ACGTGTTGGCGGTGAACGGCATGCTGGTCCGAGAGG...TGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CCA 90 bp | GCTCCCTTTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCGCATGGCGAAGTCCGTaGTCACACAGCCAACCTGCA | + |
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Preference number: 4 (lower is better) Translates to: APFPRWGGVLVLRIHRHGAWRSP*SHSQPA Trigger: TGCAGGTTGGCTGTGTGACCACGGACTTCGCCATGC...GCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR GCA 90 bp | CACCCCGACAAATTCTGCTTCCAGCTGGTAAGTCAGAGCCAGCACCTGGATATCGCACTGCCAGCCGCCTaGGCGTGGCCTTGTCGCGAA | + |
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Preference number: 4 (lower is better) Translates to: HPDKFCFQLVSQSQHLDIALPAA*AWPCRE Trigger: TTCGCGACAAGGCCACGCGCAGGCGGCTGGCAGTGC...GATATCCAGGTGCTGGCTCTGACTTACCAGCTGGAAGCAGAATTTGTCGGGGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165266.2 |
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| CDS-3UTR GCA 90 bp | TTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATTCTTCCCGATGTCCTaGAGAGGCGCGTCCCTCAAG | + |
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Preference number: 4 (lower is better) Translates to: FHGGVESWFCVFTGTAVTFFPMS*RGASLK Trigger: CTTGAGGGACGCGCCTCTGCAGGACATCGGGAAGAA...TGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR CCA 90 bp | CACCCCGACAAATTCTGCTTCCAGCTGGTAAGTCAGAGCCAGCACCTGGATATCCCAGCCGCCTGCGCGTaGCCTTGTCGCGAATCTCTC | + |
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Preference number: 4 (lower is better) Translates to: HPDKFCFQLVSQSQHLDIPAACA*PCRESL Trigger: GAGAGATTCGCGACAAGGCCACGCGCAGGCGGCTGG...GATATCCAGGTGCTGGCTCTGACTTACCAGCTGGAAGCAGAATTTGTCGGGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165266.2 |
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| CDS-3UTR GCA 90 bp | GGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGAGGCAGCAAACACGTCGGTCTTCTaGCTGGCCTTCTGGGAGAGT | + |
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Preference number: 4 (lower is better) Translates to: GWSPGSAYSQARQSHEAANTSVF*LAFWES Trigger: ACTCTCCCAGAAGGCCAGGCAGAAGACCGACGTGTT...TGCTGCCTCATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CCA 90 bp | GGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGAGGCAGCAATGCCCCCTTTTGGAGTaGGTAGTGAGTACCGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: GGVLVLRIHRHGSHMRQQCPLLE*VVSTGG Trigger: GCCTCCGGTACTCACTACCCACTCCAAAAGGGGGCA...TTGCTGCCTCATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CCA 90 bp | TCACATGAGGCAGCAATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCAACCTGCACGTCCTCTaGGGTGTCACACTGCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: SHEAAMLRNSLRQLRKPGNLHVL*GVTLLQ Trigger: TTGGAGCAGTGTGACACCCCAGAGGACGTGCAGGTT...GCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCTGCCTCATGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR GCA 90 bp | TTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACACACCCCGACAAATTCTaGTTCCAGCTGGTAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FHGGVESWFCVFTGTAVTHPDKF*FQLVSQ Trigger: CTGACTTACCAGCTGGAAGCAGAATTTGTCGGGGTG...TGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | AAGCTCCCTTTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGCACCCCGACAAATTCTaGTTCCAGCTGGTAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: KLPFHGGVESWFCVFTGTHPDKF*FQLVSQ Trigger: CTGACTTACCAGCTGGAAGCAGAATTTGTCGGGGTG...CGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAAAGGGAGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | AGCAATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTACTGCTTCTTCTGGGGTGTCACACTaGTCCAACTCCTGCTGGATC | + |
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Preference number: 4 (lower is better) Translates to: SNAAQQPQAVEKARPTASSGVSH*SNSCWI Trigger: GATCCAGCAGGAGTTGGAGCAGTGTGACACCCCAGA...AGAAGCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR GCA 90 bp | GGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGAGGCAGCAAGGGTTTCGGGAGAAATaGATGTGCAAGGTCCCATCG | + |
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Preference number: 4 (lower is better) Translates to: GGVLVLRIHRHGSHMRQQGFREK*MCKVPS Trigger: CGATGGGACCTTGCACATGCATTTCTCCCGAAACCC...TTGCTGCCTCATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| 3UTR CAA 72 bp | CATGAGGCAGCAATGCTGCGCAACAGCCTCAGGCAGTaGAGAAAGCCAGGCCTACTGCTTCTGTCTAGATGG | + |
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Preference number: 4 (lower is better) Translates to: HEAAMLRNSLRQ*RKPGLLLLSRW Trigger: CCATCTAGACAGAAGCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCTGCCTCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | CCCGACAAATTCTGCTTCCAGCTGGTAAGTCAGAGCCAGCACCTGGATATCTGTTTCTTCCCGATGTCCTaGAGAGGCGCGTCCCTCAAG | + |
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Preference number: 4 (lower is better) Translates to: PDKFCFQLVSQSQHLDICFFPMS*RGASLK Trigger: CTTGAGGGACGCGCCTCTGCAGGACATCGGGAAGAA...ACAGATATCCAGGTGCTGGCTCTGACTTACCAGCTGGAAGCAGAATTTGTCGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165266.2 |
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| CDS-3UTR GCA 90 bp | GCAGCAATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTACTGCTTTGGAAGCCAGAAATGTaGAGAGCAGTTTCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: AAMLRNSLRQLRKPGLLLWKPEM*RAVSGC Trigger: GCACCCTGAAACTGCTCTGCACATTTCTGGCTTCCA...AAGCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR CCA 90 bp | TTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGCTCCAACTCCTGCTaGATCTGCTTTATGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: FHGGVESWFCVFTGTAVTCSNSC*ICFMLL Trigger: CAGCAACATAAAGCAGATCCAGCAGGAGTTGGAGCA...TGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR GCA 90 bp | AGCAATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTACTGCTTCTTGGAAGCCAGAAATGTaGAGAGCAGTTTCAGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: SNAAQQPQAVEKARPTASWKPEM*RAVSGC Trigger: GCACCCTGAAACTGCTCTGCACATTTCTGGCTTCCA...AGAAGCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR GCA 90 bp | AGCAATGCTGCGCAACAGCCTCAGGCAGTTGAGAAAGCCAGGCCTACTGCTTCTCGGGAGAAATGCATGTaGAAGGTCCCATCGTCATTG | + |
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Preference number: 4 (lower is better) Translates to: SNAAQQPQAVEKARPTASREKCM*KVPSSL Trigger: CAATGACGATGGGACCTTGCACATGCATTTCTCCCG...AGAAGCAGTAGGCCTGGCTTTCTCAACTGCCTGAGGCTGTTGCGCAGCATTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| 3UTR CAA 72 bp | TTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATaGGCTCCGAGGCGCCCTCTTTTCTGCTTCAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: LATSSFELQGST*APRRPLFCFKL Trigger: GAGCTTGAAGCAGAAAAGAGGGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS-3UTR CCA 90 bp | AAAGATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGGGATGGCCGAGCGGCTaGAGATGTCATTCTCTGCAA | + |
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Preference number: 4 (lower is better) Translates to: KDLATSSFELQGSTLAPRGWPSG*RCHSLQ Trigger: TTGCAGAGAATGACATCTCCAGCCGCTCGGCCATCC...CCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR GCA 90 bp | AAAGATTTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGTCAATCAGCAGCTCCTaGAGCTCACGGTCAATGTTA | + |
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Preference number: 4 (lower is better) Translates to: KDLATSSFELQGSTLAPRSISSS*SSRSML Trigger: TAACATTGACCGTGAGCTGCAGGAGCTGCTGATTGA...CCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAAATCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CCA 90 bp | AACACAGAGGAGCTGAACATTGAGTTTATTAGAAAAAGATTTGGCTACTTCTTCGTAGAACATTCTGCATaGCGAAGTCCGTGGTCACAC | + |
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Preference number: 4 (lower is better) Translates to: NTEELNIEFIRKRFGYFFVEHSA*RSPWSH Trigger: GTGTGACCACGGACTTCGCCATGCAGAATGTTCTAC...GAAGAAGTAGCCAAATCTTTTTCTAATAAACTCAATGTTCAGCTCCTCTGTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CAA 90 bp | TCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATTCGGTCAGATGGGGGTaGATGGCGTATTTGCCCCCT | + |
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Preference number: 5 (lower is better) Translates to: STVGWSPGSAYSQARQSHSVRWG*MAYLPP Trigger: AGGGGGCAAATACGCCATCAACCCCCATCTGACCGA...ATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS GCA 90 bp | TCCTCCTCCTCCTCTTCCTCCTCCCTTCCATCAATCAGCAGCTCCTaGAGCTCACGGTCAATGTTAGGCAGCGGGGTCCTCCAGAACATG | + |
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Preference number: 5 (lower is better) Translates to: SSSSSSSSLPSISSS*SSRSMLGSGVLQNM Trigger: CATGTTCTGGAGGACCCCGCTGCCTAACATTGACCGTGAGCTGCAGGAGCTGCTGATTGATGGAAGGGAGGAGGAAGAGGAGGAGGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CAA 90 bp | TTCCACGGTGGGGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGTAAGGGTTTAGACTaGGAGGGCAGATGGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: FHGGVESWFCVFTGTAVTCKGLD*EGRWKP Trigger: TGGCTTCCATCTGCCCTCCAAGTCTAAACCCTTACA...TGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACCCCACCGTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CAA 90 bp | GGTGGAGTCCTGGTTCTGCGTATTCACAGGCACGGCAGTCACATGAGGCAGCAACGTATTTGCCCCCTTTaGGAGTGGGTAGTGAGTACC | + |
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Preference number: 5 (lower is better) Translates to: GGVLVLRIHRHGSHMRQQRICPL*EWVVST Trigger: GGTACTCACTACCCACTCCAAAAGGGGGCAAATACG...TTGCTGCCTCATGTGACTGCCGTGCCTGTGAATACGCAGAACCAGGACTCCACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS-3UTR CAA 90 bp | TTGGCTACTTCTTCCTTTGAACTTCAAGGCTCAACATTGGCTCCGAGGCGCCCTTGTCCGATGTCGTCCTaGGAGGGCAGATGGAAGCCA | + |
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Preference number: 5 (lower is better) Translates to: LATSSFELQGSTLAPRRPCPMSS*EGRWKP Trigger: TGGCTTCCATCTGCCCTCCAAGGACGACATCGGACA...AGGGCGCCTCGGAGCCAATGTTGAGCCTTGAAGTTCAAAGGAAGAAGTAGCCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169311.8 |
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| CDS GCA 90 bp | TACCGGAGGCCTCGTGGGTTCAGAACTTTCGGGTTTCGGGAGAAATaGATGTGCAAGGTCCCATCGTCATTGATAGTCACAGACACTTTC | + |
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Preference number: 5 (lower is better) Translates to: YRRPRGFRTFGFREK*MCKVPSSLIVTDTF Trigger: GAAAGTGTCTGTGACTATCAATGACGATGGGACCTTGCACATGCATTTCTCCCGAAACCCGAAAGTTCTGAACCCACGAGGCCTCCGGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS TCA 72 bp | CAGTTACCAGCCGCACGTACTCTGGGAGAGGCTCCTTaGACCGAAGCTGGTAGGGCAGCACTGCCAGCCGCC | + |
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Preference number: 6 (lower is better) Translates to: QLPAARTLGEAP*TEAGRAALPAA Trigger: GGCGGCTGGCAGTGCTGCCCTACCAGCTTCGGTTCAAGGAGCCTCTCCCAGAGTACGTGCGGCTGGTAACTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003946.9 ENSMUST00000169311.8 |
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| CDS GCA 72 bp | TTCTGCATGGCGAAGTCCGTGGTCACACAGCCAACCTaGACGTCCTCTGGGGTGTCACACTGCTCCAACTCC | + |
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Preference number: 6 (lower is better) Translates to: FCMAKSVVTQPT*TSSGVSHCSNS Trigger: GGAGTTGGAGCAGTGTGACACCCCAGAGGACGTGCAGGTTGGCTGTGTGACCACGGACTTCGCCATGCAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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| CDS GCA 72 bp | CCTCGTGGGTTCAGAACTTTCGGGTTTCGGGAGAAATaGATGTGCAAGGTCCCATCGTCATTGATAGTCACA | + |
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Preference number: 6 (lower is better) Translates to: PRGFRTFGFREK*MCKVPSSLIVT Trigger: TGTGACTATCAATGACGATGGGACCTTGCACATGCATTTCTCCCGAAACCCGAAAGTTCTGAACCCACGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003946.9 |
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