RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NNT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025453

Ensembl transcript IDs: ENSMUST00000069902.13, ENSMUST00000099149.10, ENSMUST00000109204.8, ENSMUST00000223268.2

Found 372 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTaGGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCCCCTAGGGTC +
Preference number: 1 (lower is better)
Translates to: EHARLKRQVAATAAL*VWRLLDSLVSSPRV
Trigger: GACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR GCA 90 bp AGTGTTCCTGAGGGAAGACCTCGAGAGCTCACTGTCTCTCCTAGATaGCAAGAATCAATGTGCCTTAGTGGGGACTCGGAGAGGAGCAGA +
Preference number: 1 (lower is better)
Translates to: SVPEGRPRELTVSPR*QESMCLSGDSERSR
Trigger: TCTGCTCCTCTCCGAGTCCCCACTAAGGCACATTGATTCTTGGCATCTAGGAGAGACAGTGAGCTCTCGAGGTCTTCCCTCAGGAACACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR TCA 90 bp TTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATaGACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTGG +
Preference number: 1 (lower is better)
Translates to: LFCEASLGLESFAHL*TPPFSVPATEGIGW
Trigger: CCAGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR TCA 90 bp GCCTCCTTTAGAATCATAAATGGATGGAACATTCAAAAGCAAGAATaGTTCTACATCCAGTTTGGCACAGACTCTCTGACAAGCTCTAGG +
Preference number: 1 (lower is better)
Translates to: ASFRIINGWNIQKQE*FYIQFGTDSLTSSR
Trigger: CCTAGAGCTTGTCAGAGAGTCTGTGCCAAACTGGATGTAGAATCATTCTTGCTTTTGAATGTTCCATCCATTTATGATTCTAAAGGAGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR CAA 90 bp AAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTCTaGACAGCCTCGTCTCTTCCCCTAGGGTCACTTGCCTTAAGTGTC +
Preference number: 2 (lower is better)
Translates to: KGKWQQQQRCEFGGF*TASSLPLGSLALSV
Trigger: GACACTTAAGGCAAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR CAA 90 bp AGCACTGCAACAGCCATTGGGCTCTTCCTCCAAGAGCCCTGTTTTTaGTGCTCCTTGAGACCCATGAAAAATGATCTAAGTGTGCACGGT +
Preference number: 2 (lower is better)
Translates to: STATAIGLFLQEPCF*CSLRPMKNDLSVHG
Trigger: ACCGTGCACACTTAGATCATTTTTCATGGGTCTCAAGGAGCACAAAAAACAGGGCTCTTGGAGGAAGAGCCCAATGGCTGTTGCAGTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR-3UTR TCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAGGCTTCTTTGGGTCTTaGGAGCTTTGCTCATCTATG +
Preference number: 2 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRGFFGS*ELCSSM
Trigger: CATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCC...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR TCA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCCCAAGACCGGGTAAGTaGCCTCTGACCTCATCACCT +
Preference number: 2 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFPRPGK*PLTSSP
Trigger: AGGTGATGAGGTCAGAGGTCACTTACCCGGTCTTGG...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR CAA 90 bp GCTGATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTaGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTG +
Preference number: 2 (lower is better)
Translates to: ADLENLHCFVRLLWV*RALLIYERLLSLFL
Trigger: CAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR GCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCTGGACAAAATACTCTTaGTTTTTGGGCAATGGCGAC +
Preference number: 2 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFWTKYS*FLGNGD
Trigger: GTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCA...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGGGCTTCTTTGGGTCTTaGGAGCTTTGCTCATCTATG +
Preference number: 2 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKGFFGS*ELCSSM
Trigger: CATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCC...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR TCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGGGTTGCATCTAAAGTaGGGCTGCTTTTTCACTGTG +
Preference number: 2 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTGLHLK*GCFFTV
Trigger: CACAGTGAAAAAGCAGCCTCACTTTAGATGCAACCC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTGGCTTCTTTGGGTCTTaGGAGCTTTGCTCATCTATG +
Preference number: 2 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIGFFGS*ELCSSM
Trigger: CATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCC...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTGGGTTGCATCTAAAGTaGGGCTGCTTTTTCACTGTG +
Preference number: 2 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIGLHLK*GCFFTV
Trigger: CACAGTGAAAAAGCAGCCTCACTTTAGATGCAACCC...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR GCA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCACTGTCTCTCCTAGATaGCAAGAATCAATGTGCCTT +
Preference number: 2 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFTVSPR*QESMCL
Trigger: AAGGCACATTGATTCTTGGCATCTAGGAGAGACAGT...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR-3UTR GCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATGGAGTATGGCTAAGATaGAAGAGAACAGGTCAGGAG +
Preference number: 2 (lower is better)
Translates to: RSYITFMNSFITQMVAFHGVWLR*KRTGQE
Trigger: CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCC...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
3UTR-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTATTTCCAATGCTTTTTaGGAAGCATGGGGTGCTGAT +
Preference number: 2 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIISNAF*EAWGAD
Trigger: ATCAGCACCCCATGCTTCTCAAAAAGCATTGGAAAT...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR TCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATTTCCAATGCTTTTTaGGAAGCATGGGGTGCTGAT +
Preference number: 2 (lower is better)
Translates to: LCHQRRSYITFMNSFITQISNAF*EAWGAD
Trigger: ATCAGCACCCCATGCTTCTCAAAAAGCATTGGAAAT...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
3UTR-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTACATAGGTAGGCGATaGGAATTTCCAATGCTTTTT +
Preference number: 2 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKYIGRR*EFPMLF
Trigger: AAAAAGCATTGGAAATTCTCATCGCCTACCTATGTA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR GCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTGATGAGAATTTCCAATaGTTTTTGAGAAGCATGGGG +
Preference number: 2 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIDENFQ*FLRSMG
Trigger: CCCCATGCTTCTCAAAAAGCATTGGAAATTCTCATC...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR GCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGGATGAGAATTTCCAATaGTTTTTGAGAAGCATGGGG +
Preference number: 2 (lower is better)
Translates to: NHLMLALCHQRRSYITFMDENFQ*FLRSMG
Trigger: CCCCATGCTTCTCAAAAAGCATTGGAAATTCTCATC...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
3UTR-3UTR CCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTGAGACCAATTGGCAATaGGACTTTCAAAAATACAAC +
Preference number: 2 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIETNWQ*DFQKYN
Trigger: GTTGTATTTTTGAAAGTCCCATTGCCAATTGGTCTC...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR CCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGGAGACCAATTGGCAATaGGACTTTCAAAAATACAAC +
Preference number: 2 (lower is better)
Translates to: LCHQRRSYITFMNSFITQETNWQ*DFQKYN
Trigger: GTTGTATTTTTGAAAGTCCCATTGCCAATTGGTCTC...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
3UTR-3UTR CCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATGAGACCAATTGGCAATaGGACTTTCAAAAATACAAC +
Preference number: 2 (lower is better)
Translates to: RSYITFMNSFITQMVAFHETNWQ*DFQKYN
Trigger: GTTGTATTTTTGAAAGTCCCATTGCCAATTGGTCTC...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
3UTR-3UTR CCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGGTTAAAGAGACCAATTaGCAATGGGACTTTCAAAAA +
Preference number: 2 (lower is better)
Translates to: LCHQRRSYITFMNSFITQVKETN*QWDFQK
Trigger: TTTTTGAAAGTCCCATTGCCAATTGGTCTCTTTAAC...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
3UTR CCA 72 bp CACCCTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTaGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTC +
Preference number: 3 (lower is better)
Translates to: HPPKNTQGSKGK*QQQQRCEFGGF
Trigger: GAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR TCA 72 bp AGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTaGGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCC +
Preference number: 3 (lower is better)
Translates to: RLKRQVAATAAL*VWRLLDSLVSS
Trigger: GGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR TCA 72 bp GAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATaGACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGC +
Preference number: 3 (lower is better)
Translates to: EASLGLESFAHL*TPPFSVPATEG
Trigger: GCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR CAA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCGCACTGCAACAGCCATaGGGCTCTTCCTCCAAGAGC +
Preference number: 3 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFALQQP*GSSSKS
Trigger: GCTCTTGGAGGAAGAGCCCAATGGCTGTTGCAGTGC...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR-3UTR CAA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGAGGCTTCTTTGGGTCTaGAGAGCTTTGCTCATCTAT +
Preference number: 3 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQERLLWV*RALLIY
Trigger: ATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCT...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR TCA 72 bp GGAAGTAAAATTCAGTTGACACCAAGACCGGGTAAGTaGCCTCTGACCTCATCACCTATGCCTCCTTTAGAA +
Preference number: 3 (lower is better)
Translates to: GSKIQLTPRPGK*PLTSSPMPPLE
Trigger: TTCTAAAGGAGGCATAGGTGATGAGGTCAGAGGTCACTTACCCGGTCTTGGTGTCAACTGAATTTTACTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR CCA 72 bp AACCTGCTGCAGATTTGGCATGATCAATCCGGAGTATaGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATA +
Preference number: 3 (lower is better)
Translates to: NLLQIWHDQSGV*LRCKRTGQELI
Trigger: TATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAATCTGCAGCAGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR CAA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAGGCTTCTTTGGGTCTaGAGAGCTTTGCTCATCTAT +
Preference number: 3 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFRLLWV*RALLIY
Trigger: ATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCT...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR CCA 72 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTaGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTC +
Preference number: 3 (lower is better)
Translates to: DLENLHCFVRLL*VLRALLIYERL
Trigger: GAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR CAA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAAGGCTTCTTTGGGTCTaGAGAGCTTTGCTCATCTAT +
Preference number: 3 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTRLLWV*RALLIY
Trigger: ATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCT...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR CAA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTGTGGACAAAATACTCTaGCTTTTTGGGCAATGGCGA +
Preference number: 3 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIVDKIL*LFGQWR
Trigger: TCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR TCA 72 bp CTCGAACATTCAACTTCTGAACTGATTTCTAGCTACTaGAAGGGAATTTTAAGAATCCAGTGGGGTTGCATC +
Preference number: 3 (lower is better)
Translates to: LEHSTSELISSY*KGILRIQWGCI
Trigger: GATGCAACCCCACTGGATTCTTAAAATTCCCTTTCAGTAGCTAGAAATCAGTTCAGAAGTTGAATGTTCGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR-3UTR CAA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGGTGGACAAAATACTCTaGCTTTTTGGGCAATGGCGA +
Preference number: 3 (lower is better)
Translates to: NHLMLALCHQRRSYITFMVDKIL*LFGQWR
Trigger: TCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
3UTR TCA 72 bp AGAATCATAAATGGATGGAACATTCAAAAGCAAGAATaGTTCTACATCCAGTTTGGCACAGACTCTCTGACA +
Preference number: 3 (lower is better)
Translates to: RIINGWNIQKQE*FYIQFGTDSLT
Trigger: TGTCAGAGAGTCTGTGCCAAACTGGATGTAGAATCATTCTTGCTTTTGAATGTTCCATCCATTTATGATTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR TCA 72 bp CTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATaGACTCATTTATTACTCAGATGGTTGCATTCCATT +
Preference number: 3 (lower is better)
Translates to: LFVIRDEATSLL*THLLLRWLHSI
Trigger: AATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR GCA 90 bp GGAGAGGAGCAGATCATGAGCTCAGCACTGCAACAGCCATTGGGCTCTTCCTCCGCCTCCAAGGGTGGCTaGCAGGCCTCCTGCAACCCC +
Preference number: 4 (lower is better)
Translates to: GEEQIMSSALQQPLGSSSASKGG*QASCNP
Trigger: GGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGC...GGAGGAAGAGCCCAATGGCTGTTGCAGTGCTGAGCTCATGATCTGCTCCTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp CTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGTGCGCCCATCGACTTTaGTGCCCCCGCAGAAGCGAG +
Preference number: 4 (lower is better)
Translates to: LPRTRKAQKASGSNSSAVCAHRL*CPRRSE
Trigger: CTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCA...CACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp GGAGAGGAGCAGATCATGAGCTCAGCACTGCAACAGCCATTGGGCTCTTCCTCCCAGGCCTGCATTGAGTaGGTGCCTTCCAGGGAGCAG +
Preference number: 4 (lower is better)
Translates to: GEEQIMSSALQQPLGSSSQACIE*VPSREQ
Trigger: CTGCTCCCTGGAAGGCACGCACTCAATGCAGGCCTG...GGAGGAAGAGCCCAATGGCTGTTGCAGTGCTGAGCTCATGATCTGCTCCTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp AGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGAGTCGAGCTGTTCCCTaGGTGGAAAGGCCGCCCAGG +
Preference number: 4 (lower is better)
Translates to: RTRKAQKASGSNSSAVSLSRAVP*VERPPR
Trigger: CCTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACT...CAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp AAGATGAACAGCAGTGTTCCTGAGGGAAGACCTCGAGAGCTCACTGTCTCTCCTGCCCATCGACTTTGCTaGCCCCGCAGAAGCGAGCCC +
Preference number: 4 (lower is better)
Translates to: KMNSSVPEGRPRELTVSPAHRLC*PRRSEP
Trigger: GGGCTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGC...AGGAGAGACAGTGAGCTCTCGAGGTCTTCCCTCAGGAACACTGCTGTTCATCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp CTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGGGTCATCTGGGAACTTaGAAGCTTCGCCTGCGCCTG +
Preference number: 4 (lower is better)
Translates to: LPRTRKAQKASGSNSSAVGHLGT*KLRLRL
Trigger: CAGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACC...CACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp AGGGAAGACCTCGAGAGCTCACTGTCTCTCCTAGATGCCAAGAATCAATGTGCCGAGCTGTTCCCTGAGTaGAAAGGCCGCCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: REDLESSLSLLDAKNQCAELFPE*KGRPGP
Trigger: GGGCCCTGGGCGGCCTTTCCACTCAGGGAACAGCTC...GGCACATTGATTCTTGGCATCTAGGAGAGACAGTGAGCTCTCGAGGTCTTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTGAGCTGTTCCCTGAGTaGAAAGGCCGCCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: LLIYERLLSLFLQPKASAELFPE*KGRPGP
Trigger: GGGCCCTGGGCGGCCTTTCCACTCAGGGAACAGCTC...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp AGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGTCAGGCCTCCAAGGGTaGCTGCCAGGCCTCCTGCAA +
Preference number: 4 (lower is better)
Translates to: RTRKAQKASGSNSSAVSLSGLQG*LPGLLQ
Trigger: TTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGA...CAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR CAA 72 bp TGGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTCTaGACAGCCTCGTCTCTTCCCCTAGGGTCACTTGCC +
Preference number: 4 (lower is better)
Translates to: WQQQQRCEFGGF*TASSLPLGSLA
Trigger: GGCAAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp CCTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTCACCACAGTGCCTGGTaGGTACGAAGCGTTCGTACA +
Preference number: 4 (lower is better)
Translates to: PPKNTQGSKGKWQQQQRCHHSAW*VRSVRT
Trigger: TGTACGAACGCTTCGTACTCACCAGGCACTGTGGTG...ACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTCCAGCAGGCCTGCATTaGGTGCGTGCCTTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: LLIYERLLSLFLQPKASAPAGLH*VRAFQG
Trigger: TCCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGG...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTCAGCAGGTTGTTGTTaGGCAGGAAGCCCTCGGCAC +
Preference number: 4 (lower is better)
Translates to: PRTRKAQKASGSNSSAVSSAGCC*AGSPRH
Trigger: GTGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGA...ACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTTGCGCCCATCGACTTTaGTGCCCCCGCAGAAGCGAG +
Preference number: 4 (lower is better)
Translates to: LLIYERLLSLFLQPKASACAHRL*CPRRSE
Trigger: CTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCA...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GGAGAGGAGCAGATCATGAGCTCAGCACTGCAACAGCCATTGGGCTCTTCCTCCGCAGGTAAGAACTGCTaGCAGCCCCACCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: GEEQIMSSALQQPLGSSSAGKNC*QPHQTV
Trigger: CACAGTTTGGTGGGGCTGGCAGCAGTTCTTACCTGC...GGAGGAAGAGCCCAATGGCTGTTGCAGTGCTGAGCTCATGATCTGCTCCTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp CAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTCCCTGCATTGAGTGCGTaGCTTCCAGGGAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: QGSKGKWQQQQRCEFGGFPALSA*LPGSSR
Trigger: TCTGCTGCTCCCTGGAAGGCACGCACTCAATGCAGG...GAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTCACCAGAGGAGCCGATaGGCGCGCCCACGATGGTCA +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSHQRSR*ARPRWS
Trigger: TGACCATCGTGGGCGCGCTCATCGGCTCCTCTGGTG...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CCTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTTTTTCCACCAGCTGTTaGCGTTGTGCCATAGCCTCC +
Preference number: 4 (lower is better)
Translates to: PPKNTQGSKGKWQQQQRCFSTSC*RCAIAS
Trigger: GGAGGCTATGGCACAACGTCAACAGCTGGTGGAAAA...ACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp CAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTCTCGGCAATGGGGTACTaGGCTTTAGCAGCACAGAGC +
Preference number: 4 (lower is better)
Translates to: QGSKGKWQQQQRCEFGGFSAMGY*ALAAQS
Trigger: GCTCTGTGCTGCTAAAGCTCAGTACCCCATTGCCGA...GAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp CCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTGGTCCGTGGGTCGCTTaGACATGTCCAGCATTCTCT +
Preference number: 4 (lower is better)
Translates to: PRTRKAQKASGSNSSAVSGPWVA*TCPAFS
Trigger: AGAGAATGCTGGACATGTTCAAGCGACCCACGGACC...ACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTGCCCATCGACTTTGCTaGCCCCGCAGAAGCGAGCCC +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSAHRLC*PRRSEP
Trigger: GGGCTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGC...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGGCCTCCAAGGGTGGCTaGCAGGCCTCCTGCAACCCC +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEASKGG*QASCNP
Trigger: GGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGC...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp CGCTGTGAGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCCCCTAGGGTCACTTACTTCCTTCATCCCTTaGATCTGGGCCCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: RCEFGGFLTASSLPLGSLTSFIP*IWAPAA
Trigger: AGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGT...AAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp GGAGAGGAGCAGATCATGAGCTCAGCACTGCAACAGCCATTGGGCTCTTCCTCCTTCGCGTATCCTCCTTaGCCCTCACCAGATTCCTTC +
Preference number: 4 (lower is better)
Translates to: GEEQIMSSALQQPLGSSSFAYPP*PSPDSF
Trigger: GAAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAA...GGAGGAAGAGCCCAATGGCTGTTGCAGTGCTGAGCTCATGATCTGCTCCTCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTCCAGCAGGCCTGCATTaGGTGCGTGCCTTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSPAGLH*VRAFQG
Trigger: TCCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGG...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGCACCAGAGGAGCCGATaGGCGCGCCCACGATGGTCA +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEHQRSR*ARPRWS
Trigger: TGACCATCGTGGGCGCGCTCATCGGCTCCTCTGGTG...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGCTGCGTTGTCCAGGTTaGTTTCTGTATGTGTGCCAG +
Preference number: 4 (lower is better)
Translates to: LPRTRKAQKASGSNSSAVLRCPG*FLYVCQ
Trigger: CTGGCACACATACAGAAATCAACCTGGACAACGCAG...CACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAGCCCATCGACTTTGCTaGCCCCGCAGAAGCGAGCCC +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRAHRLC*PRRSEP
Trigger: GGGCTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGC...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp CCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTCATGAGAGTAGAGAGTaGGGACACAGAGCCCAGACA +
Preference number: 4 (lower is better)
Translates to: PRTRKAQKASGSNSSAVSHESRE*GHRAQT
Trigger: TGTCTGGGCTCTGTGTCCGCACTCTCTACTCTCATG...ACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp CCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTGATGGTGCCACCCATTaGCATTGCTCCAGACATCTG +
Preference number: 4 (lower is better)
Translates to: PRTRKAQKASGSNSSAVSDGATH*HCSRHL
Trigger: CAGATGTCTGGAGCAATGGCAATGGGTGGCACCATC...ACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp CTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGTCTGTAGAGGTCATCTaGGAACTTGGAAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: LPRTRKAQKASGSNSSAVSVEVI*ELGSFA
Trigger: GGCGAAGCTTCCAAGTTCCCAGATGACCTCTACAGA...CACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp CCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTGTCACTCTTGGAACCTaGTCCATCGCCAGAACTGTG +
Preference number: 4 (lower is better)
Translates to: PRTRKAQKASGSNSSAVSVTLGT*SIARTV
Trigger: CACAGTTCTGGCGATGGACCAGGTTCCAAGAGTGAC...ACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTTCAGGCCTCCAAGGGTaGCTGCCAGGCCTCCTGCAA +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSSGLQG*LPGLLQ
Trigger: TTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGA...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp AGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGTGTTGGCCATGGAACTaGGAGCATCATAGCCCTGAG +
Preference number: 4 (lower is better)
Translates to: RTRKAQKASGSNSSAVSLCWPWN*EHHSPE
Trigger: CTCAGGGCTATGATGCTCTCAGTTCCATGGCCAACA...CAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACACCAGCAGGCCTGCATTaGGTGCGTGCCTTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTPAGLH*VRAFQG
Trigger: TCCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGG...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp CTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGATGTCCAGCATTCTCTaGGTCACCAGAAAACCACCT +
Preference number: 4 (lower is better)
Translates to: LPRTRKAQKASGSNSSAVMSSIL*VTRKPP
Trigger: AGGTGGTTTTCTGGTGACTCAGAGAATGCTGGACAT...CACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAAGTCGAGCTGTTCCCTaGGTGGAAAGGCCGCCCAGG +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRSRAVP*VERPPR
Trigger: CCTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACT...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTTGGGGGCCCTCACTTTaGCCACCAGATCAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSWGPSL*PPDQKP
Trigger: TGGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCA...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCCCAGCAGGCCTGCATTaGGTGCGTGCCTTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFPAGLH*VRAFQG
Trigger: TCCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGG...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTTCAGCAGGTTGTTGTTaGGCAGGAAGCCCTCGGCAC +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSSAGCC*AGSPRH
Trigger: GTGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGA...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp AGGGAAGACCTCGAGAGCTCACTGTCTCTCCTAGATGCCAAGAATCAATGTGCCCCCCGCAGGAGACAATaGAACTCGCTTCTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: REDLESSLSLLDAKNQCAPRRRQ*NSLLVL
Trigger: CAAAACGAGAAGCGAGTTGCATTGTCTCCTGCGGGG...GGCACATTGATTCTTGGCATCTAGGAGAGACAGTGAGCTCTCGAGGTCTTCCCT
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTCCTGCATTGAGTGCGTaGCTTCCAGGGAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSPALSA*LPGSSR
Trigger: TCTGCTGCTCCCTGGAAGGCACGCACTCAATGCAGG...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACAGGCCTGCATTGAGTaGGTGCCTTCCAGGGAGCAG +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRQACIE*VPSREQ
Trigger: CTGCTCCCTGGAAGGCACGCACTCAATGCAGGCCTG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp CCTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTTTTGGAAAATCTCCTTaGGGACCCCAACTGTCAACT +
Preference number: 4 (lower is better)
Translates to: PPKNTQGSKGKWQQQQRCFGKSP*GPQLST
Trigger: AGTTGACAGTTGGGGTCCCCAAGGAGATTTTCCAAA...ACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTTTCGCGTATCCTCCTTaGCCCTCACCAGATTCCTTC +
Preference number: 4 (lower is better)
Translates to: LLIYERLLSLFLQPKASAFAYPP*PSPDSF
Trigger: GAAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAA...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACATGGGGGCCCTCACTTTaGCCACCAGATCAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTWGPSL*PPDQKP
Trigger: TGGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCA...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp AAGATGAACAGCAGTGTTCCTGAGGGAAGACCTCGAGAGCTCACTGTCTCTCCTCAGCACCAAGGGATTTaGACTGTTCCAAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: KMNSSVPEGRPRELTVSPQHQGI*TVPKQQ
Trigger: CTGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTG...AGGAGAGACAGTGAGCTCTCGAGGTCTTCCCTCAGGAACACTGCTGTTCATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCCACCAGAGGAGCCGATaGGCGCGCCCACGATGGTCA +
Preference number: 4 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFHQRSR*ARPRWS
Trigger: TGACCATCGTGGGCGCGCTCATCGGCTCCTCTGGTG...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTTCGGCAATGGGGTACTaGGCTTTAGCAGCACAGAGC +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSSAMGY*ALAAQS
Trigger: GCTCTGTGCTGCTAAAGCTCAGTACCCCATTGCCGA...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGAGGAGCACATTAAGCTaGCCAGGCATTCGGCCCGCA +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQERSTLS*PGIRPA
Trigger: TGCGGGCCGAATGCCTGGTCAGCTTAATGTGCTCCT...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTGGTCCGTGGGTCGCTTaGACATGTCCAGCATTCTCT +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSGPWVA*TCPAFS
Trigger: AGAGAATGCTGGACATGTTCAAGCGACCCACGGACC...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGGCCCATCGACTTTGCTaGCCCCGCAGAAGCGAGCCC +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALAHRLC*PRRSEP
Trigger: GGGCTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGC...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACCTGCATTGAGTGCGTaGCTTCCAGGGAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRPALSA*LPGSSR
Trigger: TCTGCTGCTCCCTGGAAGGCACGCACTCAATGCAGG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGCCTCCAAGGGTGGCTaGCAGGCCTCCTGCAACCCC +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTASKGG*QASCNP
Trigger: GGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTACTTCCTTCATCCCTTaGATCTGGGCCCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSTSFIP*IWAPAA
Trigger: AGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGT...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTCATTCGGCCCGCAACTaGGTGGATTCCAAACCTGAC +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSHSARN*VDSKPD
Trigger: GTCAGGTTTGGAATCCACCCAGTTGCGGGCCGAATG...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGCACCACAGTGCCTGGTaGGTACGAAGCGTTCGTACA +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEHHSAW*VRSVRT
Trigger: TGTACGAACGCTTCGTACTCACCAGGCACTGTGGTG...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACACCACAGTGCCTGGTaGGTACGAAGCGTTCGTACA +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRHHSAW*VRSVRT
Trigger: TGTACGAACGCTTCGTACTCACCAGGCACTGTGGTG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCTCAGCAGGTTGTTGTTaGGCAGGAAGCCCTCGGCAC +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFSAGCC*AGSPRH
Trigger: GTGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGA...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAACTTCCTTCATCCCTTaGATCTGGGCCCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRTSFIP*IWAPAA
Trigger: AGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGT...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGAGCTGTTCCCTGAGTaGAAAGGCCGCCCAGGGCCC +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTELFPE*KGRPGP
Trigger: GGGCCCTGGGCGGCCTTTCCACTCAGGGAACAGCTC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGTCAGGCCTCCAAGGGTaGCTGCCAGGCCTCCTGCAA +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALSGLQG*LPGLLQ
Trigger: TTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGA...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAAGCTTCGCCTGCGCCTaGTTCCACGACAACATTGAA +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRSFACA*FHDNIE
Trigger: TTCAATGTTGTCGTGGAATCAGGCGCAGGCGAAGCT...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTGTTGGCCATGGAACTaGGAGCATCATAGCCCTGAG +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQECWPWN*EHHSPE
Trigger: CTCAGGGCTATGATGCTCTCAGTTCCATGGCCAACA...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGATTTTCCACCAGCTGTTaGCGTTGTGCCATAGCCTCC +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRFSTSC*RCAIAS
Trigger: GGAGGCTATGGCACAACGTCAACAGCTGGTGGAAAA...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTAACACAGCACAAGCCTaGGCCCAGGTACATGATTTC +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSNTAQA*AQVHDF
Trigger: GAAATCATGTACCTGGGCTCAGGCTTGTGCTGTGTT...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGCCCCGCAGGAGACAATaGAACTCGCTTCTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEPRRRQ*NSLLVL
Trigger: CAAAACGAGAAGCGAGTTGCATTGTCTCCTGCGGGG...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACCAGCAGCTGTGATCTaGCCAGTGAAAAACCTCCCA +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRPAAVI*PVKNLP
Trigger: TGGGAGGTTTTTCACTGGGCAGATCACAGCTGCTGG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACAAAATCCTCGGACAACTaGGCCCATCGACTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTKSSDN*AHRLCC
Trigger: GCAGCAAAGTCGATGGGCGCAGTTGTCCGAGGATTT...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTGGATGTCCACCTCCTTaGACTGTTGAGCAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSGCPPP*TVEQRA
Trigger: AGCTCTTTGCTCAACAGTGCAAGGAGGTGGACATCC...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTCCCGAACTTTGGCCTaGAGAGCGTCACATGTCTTC +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQESRTLA*RASHVF
Trigger: GAAGACATGTGACGCTCTGCAGGCCAAAGTTCGGGA...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp CGCTGTGAGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCCCCTAGGGTCACTTCTTATATGGAATTCCTaGCTTTACCGGGGATTTACA +
Preference number: 4 (lower is better)
Translates to: RCEFGGFLTASSLPLGSLLIWNS*LYRGFT
Trigger: TGTAAATCCCCGGTAAAGCCAGGAATTCCATATAAG...AAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAGTCACTCTTGGAACCTaGTCCATCGCCAGAACTGTG +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRVTLGT*SIARTV
Trigger: CACAGTTCTGGCGATGGACCAGGTTCCAAGAGTGAC...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTTGCCAGAAATTTCCATaGGTTTTCCACCAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: LLIYERLLSLFLQPKASACQKFP*VFHQLL
Trigger: CAACAGCTGGTGGAAAACCCATGGAAATTTCTGGCA...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACGGCCCGCAACTGGGTaGATTCCAAACCTGACTTTT +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRRPATG*IPNLTF
Trigger: AAAAGTCAGGTTTGGAATCCACCCAGTTGCGGGCCG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACAGCACCAAGGGATTTaGACTGTTCCAAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRQHQGI*TVPKQQ
Trigger: CTGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGTCAGCAGGTTGTTGTTaGGCAGGAAGCCCTCGGCAC +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALSAGCC*AGSPRH
Trigger: GTGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGA...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGCACCAGAGGAGCCGATaGGCGCGCCCACGATGGTCA +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMHQRSR*ARPRWS
Trigger: TGACCATCGTGGGCGCGCTCATCGGCTCCTCTGGTG...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACTGCGTTGTCCAGGTTaGTTTCTGTATGTGTGCCAG +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRLRCPG*FLYVCQ
Trigger: CTGGCACACATACAGAAATCAACCTGGACAACGCAG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGAGGAGCACATTAAGCTaGCCAGGCATTCGGCCCGCA +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALRSTLS*PGIRPA
Trigger: TGCGGGCCGAATGCCTGGTCAGCTTAATGTGCTCCT...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTGCGCCCATCGACTTTaGTGCCCCCGCAGAAGCGAG +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSICAHRL*CPRRSE
Trigger: CTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATCCTCGGACAACTaGGCCCATCGACTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFKSSDN*AHRLCC
Trigger: GCAGCAAAGTCGATGGGCGCAGTTGTCCGAGGATTT...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACAGGATGTCCACCTCCTTaGACTGTTGAGCAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTGCPPP*TVEQRA
Trigger: AGCTCTTTGCTCAACAGTGCAAGGAGGTGGACATCC...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCCTGCATTGAGTGCGTaGCTTCCAGGGAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALPALSA*LPGSSR
Trigger: TCTGCTGCTCCCTGGAAGGCACGCACTCAATGCAGG...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACACAGGCCTGCATTGAGTaGGTGCCTTCCAGGGAGCAG +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTQACIE*VPSREQ
Trigger: CTGCTCCCTGGAAGGCACGCACTCAATGCAGGCCTG...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCCATGAGAGTAGAGAGTaGGGACACAGAGCCCAGACA +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFHESRE*GHRAQT
Trigger: TGTCTGGGCTCTGTGTCCGCACTCTCTACTCTCATG...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCGATGGTGCCACCCATTaGCATTGCTCCAGACATCTG +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFDGATH*HCSRHL
Trigger: CAGATGTCTGGAGCAATGGCAATGGGTGGCACCATC...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTCTGTAGAGGTCATCTaGGAACTTGGAAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQESVEVI*ELGSFA
Trigger: GGCGAAGCTTCCAAGTTCCCAGATGACCTCTACAGA...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGAGCTATTGTCACTCTTaGAACCTGGTCCATCGCCAG +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQESYCHS*NLVHRQ
Trigger: CTGGCGATGGACCAGGTTCCAAGAGTGACAATAGCT...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACAAGCTATTGTCACTCTTaGAACCTGGTCCATCGCCAG +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTSYCHS*NLVHRQ
Trigger: CTGGCGATGGACCAGGTTCCAAGAGTGACAATAGCT...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTGGGGGCCCTCACTTTaGCCACCAGATCAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKWGPSL*PPDQKP
Trigger: TGGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp AGGGAAGACCTCGAGAGCTCACTGTCTCTCCTAGATGCCAAGAATCAATGTGCCAATCTTGGTGAAATTTaGCGTGGCATCCATTGCAAA +
Preference number: 4 (lower is better)
Translates to: REDLESSLSLLDAKNQCANLGEI*RGIHCK
Trigger: TTTGCAATGGATGCCACGTCAAATTTCACCAAGATT...GGCACATTGATTCTTGGCATCTAGGAGAGACAGTGAGCTCTCGAGGTCTTCCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCCTGCGTTGTCCAGGTTaGTTTCTGTATGTGTGCCAG +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFLRCPG*FLYVCQ
Trigger: CTGGCACACATACAGAAATCAACCTGGACAACGCAG...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGAGGAGCACATTAAGCTaGCCAGGCATTCGGCCCGCA +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKRSTLS*PGIRPA
Trigger: TGCGGGCCGAATGCCTGGTCAGCTTAATGTGCTCCT...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCGTCTTCTTGAGCCGCTaGATTCACAGTGTCGTTTGC +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFVFLSR*IHSVVC
Trigger: GCAAACGACACTGTGAATTCAGCGGCTCAAGAAGAC...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGAGTCGAGCTGTTCCCTaGGTGGAAAGGCCGCCCAGG +
Preference number: 4 (lower is better)
Translates to: LCHQRRSYITFMNSFITQSRAVP*VERPPR
Trigger: CCTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACT...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099149.10
CDS-3UTR GCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGTGCGCCCATCGACTTTaGTGCCCCCGCAGAAGCGAG +
Preference number: 4 (lower is better)
Translates to: LCHQRRSYITFMNSFITQCAHRL*CPRRSE
Trigger: CTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCA...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGGGTCATCTGGGAACTTaGAAGCTTCGCCTGCGCCTG +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKGHLGT*KLRLRL
Trigger: CAGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACC...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGGTCATCTGGGAACTTaGAAGCTTCGCCTGCGCCTG +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTGHLGT*KLRLRL
Trigger: CAGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCTCTGTAGAGGTCATCTaGGAACTTGGAAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFSVEVI*ELGSFA
Trigger: GGCGAAGCTTCCAAGTTCCCAGATGACCTCTACAGA...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGACTTCCTTCATCCCTTaGATCTGGGCCCCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALTSFIP*IWAPAA
Trigger: AGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGT...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCATTCGGCCCGCAACTaGGTGGATTCCAAACCTGAC +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALHSARN*VDSKPD
Trigger: GTCAGGTTTGGAATCCACCCAGTTGCGGGCCGAATG...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGCACCACAGTGCCTGGTaGGTACGAAGCGTTCGTACA +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKHHSAW*VRSVRT
Trigger: TGTACGAACGCTTCGTACTCACCAGGCACTGTGGTG...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTGGGGGCCCTCACTTTaGCCACCAGATCAGAAGCCA +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIWGPSL*PPDQKP
Trigger: TGGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGAAATCCTCGGACAACTaGGCCCATCGACTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALKSSDN*AHRLCC
Trigger: GCAGCAAAGTCGATGGGCGCAGTTGTCCGAGGATTT...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGGCAGGTAAGAACTGCTaGCAGCCCCACCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKAGKNC*QPHQTV
Trigger: CACAGTTTGGTGGGGCTGGCAGCAGTTCTTACCTGC...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGCAGGTAAGAACTGCTaGCAGCCCCACCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTAGKNC*QPHQTV
Trigger: CACAGTTTGGTGGGGCTGGCAGCAGTTCTTACCTGC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGGATGGTGCCACCCATTaGCATTGCTCCAGACATCTG +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALDGATH*HCSRHL
Trigger: CAGATGTCTGGAGCAATGGCAATGGGTGGCACCATC...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGTTCGCGTATCCTCCTTaGCCCTCACCAGATTCCTTC +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALFAYPP*PSPDSF
Trigger: GAAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAA...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTGCCAGAAATTTCCATaGGTTTTCCACCAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQECQKFP*VFHQLL
Trigger: CAACAGCTGGTGGAAAACCCATGGAAATTTCTGGCA...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACATGCCAGAAATTTCCATaGGTTTTCCACCAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTCQKFP*VFHQLL
Trigger: CAACAGCTGGTGGAAAACCCATGGAAATTTCTGGCA...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
3UTR CAA 72 bp ACAGCCATTGGGCTCTTCCTCCAAGAGCCCTGTTTTTaGTGCTCCTTGAGACCCATGAAAAATGATCTAAGT +
Preference number: 4 (lower is better)
Translates to: TAIGLFLQEPCF*CSLRPMKNDLS
Trigger: ACTTAGATCATTTTTCATGGGTCTCAAGGAGCACAAAAAACAGGGCTCTTGGAGGAAGAGCCCAATGGCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCAGCACCAAGGGATTTaGACTGTTCCAAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALQHQGI*TVPKQQ
Trigger: CTGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTG...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTAATCTTGGTGAAATTTaGCGTGGCATCCATTGCAAA +
Preference number: 4 (lower is better)
Translates to: VRLLWVLRALLIYERLLSNLGEI*RGIHCK
Trigger: TTTGCAATGGATGCCACGTCAAATTTCACCAAGATT...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTTTTCCACCAGCTGTTaGCGTTGTGCCATAGCCTCC +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKFSTSC*RCAIAS
Trigger: GGAGGCTATGGCACAACGTCAACAGCTGGTGGAAAA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTCGGCAATGGGGTACTaGGCTTTAGCAGCACAGAGC +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSISAMGY*ALAAQS
Trigger: GCTCTGTGCTGCTAAAGCTCAGTACCCCATTGCCGA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCAACACAGCACAAGCCTaGGCCCAGGTACATGATTTC +
Preference number: 4 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFNTAQA*AQVHDF
Trigger: GAAATCATGTACCTGGGCTCAGGCTTGTGCTGTGTT...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR GCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGCCCCGCAGGAGACAATaGAACTCGCTTCTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKPRRRQ*NSLLVL
Trigger: CAAAACGAGAAGCGAGTTGCATTGTCTCCTGCGGGG...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGCATGAGAGTAGAGAGTaGGGACACAGAGCCCAGACA +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKHESRE*GHRAQT
Trigger: TGTCTGGGCTCTGTGTCCGCACTCTCTACTCTCATG...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGGGTCATCTGGGAACTTaGAAGCTTCGCCTGCGCCTG +
Preference number: 4 (lower is better)
Translates to: LCHQRRSYITFMNSFITQGHLGT*KLRLRL
Trigger: CAGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACC...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CCA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGAGCTATTGTCACTCTTaGAACCTGGTCCATCGCCAG +
Preference number: 4 (lower is better)
Translates to: DLENLHCFVRLLWVLRALSYCHS*NLVHRQ
Trigger: CTGGCGATGGACCAGGTTCCAAGAGTGACAATAGCT...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGCGGCCCGCAACTGGGTaGATTCCAAACCTGACTTTT +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKRPATG*IPNLTF
Trigger: AAAAGTCAGGTTTGGAATCCACCCAGTTGCGGGCCG...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTGTTGGCCATGGAACTaGGAGCATCATAGCCCTGAG +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSICWPWN*EHHSPE
Trigger: CTCAGGGCTATGATGCTCTCAGTTCCATGGCCAACA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGAATCTTGGTGAAATTTaGCGTGGCATCCATTGCAAA +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQENLGEI*RGIHCK
Trigger: TTTGCAATGGATGCCACGTCAAATTTCACCAAGATT...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGTCGGCAATGGGGTACTaGGCTTTAGCAGCACAGAGC +
Preference number: 4 (lower is better)
Translates to: LCHQRRSYITFMNSFITQSAMGY*ALAAQS
Trigger: GCTCTGTGCTGCTAAAGCTCAGTACCCCATTGCCGA...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGTCTTCTTGAGCCGCTaGATTCACAGTGTCGTTTGC +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTVFLSR*IHSVVC
Trigger: GCAAACGACACTGTGAATTCAGCGGCTCAAGAAGAC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGGGTCCGTGGGTCGCTTaGACATGTCCAGCATTCTCT +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMGPWVA*TCPAFS
Trigger: AGAGAATGCTGGACATGTTCAAGCGACCCACGGACC...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGAACACAGCACAAGCCTaGGCCCAGGTACATGATTTC +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKNTAQA*AQVHDF
Trigger: GAAATCATGTACCTGGGCTCAGGCTTGTGCTGTGTT...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGGCAGGTAAGAACTGCTaGCAGCCCCACCAAACTGTG +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMAGKNC*QPHQTV
Trigger: CACAGTTTGGTGGGGCTGGCAGCAGTTCTTACCTGC...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR GCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTCCCGAACTTTGGCCTaGAGAGCGTCACATGTCTTC +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSISRTLA*RASHVF
Trigger: GAAGACATGTGACGCTCTGCAGGCCAAAGTTCGGGA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACTTATATGGAATTCCTaGCTTTACCGGGGATTTACA +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRLIWNS*LYRGFT
Trigger: TGTAAATCCCCGGTAAAGCCAGGAATTCCATATAAG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGATTTATTGAGCAAGTCTaGATTTTGGGCTGGGTAGAT +
Preference number: 4 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRFIEQV*ILGWVD
Trigger: ATCTACCCAGCCCAAAATCCAGACTTGCTCAATAAA...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACATTTATTGAGCAAGTCTaGATTTTGGGCTGGGTAGAT +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTFIEQV*ILGWVD
Trigger: ATCTACCCAGCCCAAAATCCAGACTTGCTCAATAAA...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTGTCACTCTTGGAACCTaGTCCATCGCCAGAACTGTG +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIVTLGT*SIARTV
Trigger: CACAGTTCTGGCGATGGACCAGGTTCCAAGAGTGAC...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAAGCTATTGTCACTCTTaGAACCTGGTCCATCGCCAG +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTSYCHS*NLVHRQ
Trigger: CTGGCGATGGACCAGGTTCCAAGAGTGACAATAGCT...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
3UTR CAA 72 bp GAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTaGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: ENLHCFVRLLWV*RALLIYERLLS
Trigger: AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGTGTTGGCCATGGAACTaGGAGCATCATAGCCCTGAG +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMCWPWN*EHHSPE
Trigger: CTCAGGGCTATGATGCTCTCAGTTCCATGGCCAACA...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACATCATTTCAGCTTCAATaGACTCTTTGGACATCTCTT +
Preference number: 4 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTSFQLQ*TLWTSL
Trigger: AAGAGATGTCCAAAGAGTTCATTGAAGCTGAAATGA...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR TCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTCATTTCAGCTTCAATaGACTCTTTGGACATCTCTT +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQESFQLQ*TLWTSL
Trigger: AAGAGATGTCCAAAGAGTTCATTGAAGCTGAAATGA...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAATCTTGGTGAAATTTaGCGTGGCATCCATTGCAAA +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFNLGEI*RGIHCK
Trigger: TTTGCAATGGATGCCACGTCAAATTTCACCAAGATT...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGTTTTCCACCAGCTGTTaGCGTTGTGCCATAGCCTCC +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMFSTSC*RCAIAS
Trigger: GGAGGCTATGGCACAACGTCAACAGCTGGTGGAAAA...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGCTGGAAAATCACTGTTaGTCTCATCCATTTCTAACA +
Preference number: 4 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQELENHC*SHPFLT
Trigger: TGTTAGAAATGGATGAGATCAACAGTGATTTTCCAG...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTGTCGTTTGCTCCAATaGCAAGAACCAAGTCGGTGT +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKCRLLQ*QEPSRC
Trigger: ACACCGACTTGGTTCTTGTCATTGGAGCAAACGACA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAATGTCCAGCATTCTCTaGGTCACCAGAAAACCACCT +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTMSSIL*VTRKPP
Trigger: AGGTGGTTTTCTGGTGACTCAGAGAATGCTGGACAT...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATCCCCGCAGGAGACAATaGAACTCGCTTCTCGTTTTG +
Preference number: 4 (lower is better)
Translates to: RSYITFMNSFITQMVAFHPRRRQ*NSLLVL
Trigger: CAAAACGAGAAGCGAGTTGCATTGTCTCCTGCGGGG...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR GCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAAATCCTCGGACAACTaGGCCCATCGACTTTGCTGC +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMKSSDN*AHRLCC
Trigger: GCAGCAAAGTCGATGGGCGCAGTTGTCCGAGGATTT...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR GCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGCATGAGAGTAGAGAGTaGGGACACAGAGCCCAGACA +
Preference number: 4 (lower is better)
Translates to: LCHQRRSYITFMNSFITQHESRE*GHRAQT
Trigger: TGTCTGGGCTCTGTGTCCGCACTCTCTACTCTCATG...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR GCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGTCCCGAACTTTGGCCTaGAGAGCGTCACATGTCTTC +
Preference number: 4 (lower is better)
Translates to: LCHQRRSYITFMNSFITQSRTLA*RASHVF
Trigger: GAAGACATGTGACGCTCTGCAGGCCAAAGTTCGGGA...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTCTGTAGAGGTCATCTaGGAACTTGGAAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSISVEVI*ELGSFA
Trigger: GGCGAAGCTTCCAAGTTCCCAGATGACCTCTACAGA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCTTTATTGAGCAAGTCTaGATTTTGGGCTGGGTAGAT +
Preference number: 4 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFFIEQV*ILGWVD
Trigger: ATCTACCCAGCCCAAAATCCAGACTTGCTCAATAAA...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGGTCACTCTTGGAACCTaGTCCATCGCCAGAACTGTG +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMVTLGT*SIARTV
Trigger: CACAGTTCTGGCGATGGACCAGGTTCCAAGAGTGAC...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CCA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGTTCGCGTATCCTCCTTaGCCCTCACCAGATTCCTTC +
Preference number: 4 (lower is better)
Translates to: NHLMLALCHQRRSYITFMFAYPP*PSPDSF
Trigger: GAAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAA...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CCA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGCGGCCCGCAACTGGGTaGATTCCAAACCTGACTTTT +
Preference number: 4 (lower is better)
Translates to: LCHQRRSYITFMNSFITQRPATG*IPNLTF
Trigger: AAAAGTCAGGTTTGGAATCCACCCAGTTGCGGGCCG...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATCAGCACCAAGGGATTTaGACTGTTCCAAAGCAGCAG +
Preference number: 4 (lower is better)
Translates to: RSYITFMNSFITQMVAFHQHQGI*TVPKQQ
Trigger: CTGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTG...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTGTCGTTTGCTCCAATaGCAAGAACCAAGTCGGTGT +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSICRLLQ*QEPSRC
Trigger: ACACCGACTTGGTTCTTGTCATTGGAGCAAACGACA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR GCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATGGATGTCCACCTCCTTaGACTGTTGAGCAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: RSYITFMNSFITQMVAFHGCPPP*TVEQRA
Trigger: AGCTCTTTGCTCAACAGTGCAAGGAGGTGGACATCC...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTTTGGAAAATCTCCTTaGGGACCCCAACTGTCAACT +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKFGKSP*GPQLST
Trigger: AGTTGACAGTTGGGGTCCCCAAGGAGATTTTCCAAA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATTTGGAAAATCTCCTTaGGGACCCCAACTGTCAACT +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTFGKSP*GPQLST
Trigger: AGTTGACAGTTGGGGTCCCCAAGGAGATTTTCCAAA...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATGTCAACTGCTTATATaGAATTCCTGGCTTTACCGG +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTCQLLI*NSWLYR
Trigger: CCGGTAAAGCCAGGAATTCCATATAAGCAGTTGACA...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACACTTATATGGAATTCCTaGCTTTACCGGGGATTTACA +
Preference number: 4 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTLIWNS*LYRGFT
Trigger: TGTAAATCCCCGGTAAAGCCAGGAATTCCATATAAG...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATTTTGGAAAATCTCCTTaGGGACCCCAACTGTCAACT +
Preference number: 4 (lower is better)
Translates to: RSYITFMNSFITQMVAFHFGKSP*GPQLST
Trigger: AGTTGACAGTTGGGGTCCCCAAGGAGATTTTCCAAA...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATTGCCAGAAATTTCCATaGGTTTTCCACCAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: RSYITFMNSFITQMVAFHCQKFP*VFHQLL
Trigger: CAACAGCTGGTGGAAAACCCATGGAAATTTCTGGCA...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR TCA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTCATTTCAGCTTCAATaGACTCTTTGGACATCTCTT +
Preference number: 4 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKSFQLQ*TLWTSL
Trigger: AAGAGATGTCCAAAGAGTTCATTGAAGCTGAAATGA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTCTTATATGGAATTCCTaGCTTTACCGGGGATTTACA +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSILIWNS*LYRGFT
Trigger: TGTAAATCCCCGGTAAAGCCAGGAATTCCATATAAG...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTTTTATTGAGCAAGTCTaGATTTTGGGCTGGGTAGAT +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIFIEQV*ILGWVD
Trigger: ATCTACCCAGCCCAAAATCCAGACTTGCTCAATAAA...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTCTGGAAAATCACTGTTaGTCTCATCCATTTCTAACA +
Preference number: 4 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSILENHC*SHPFLT
Trigger: TGTTAGAAATGGATGAGATCAACAGTGATTTTCCAG...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR TCA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATTCATTTCAGCTTCAATaGACTCTTTGGACATCTCTT +
Preference number: 4 (lower is better)
Translates to: RSYITFMNSFITQMVAFHSFQLQ*TLWTSL
Trigger: AAGAGATGTCCAAAGAGTTCATTGAAGCTGAAATGA...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS GCA 90 bp GGGTGGCTGCCAGGCCTCCTGCAACCCCGATCATGCCCAAGGCATTaGCGAGTCGAGCTGTTCCCTGAGTGGAAAGGCCGCCCAGGGCCC +
Preference number: 5 (lower is better)
Translates to: GWLPGLLQPRSCPRH*RVELFPEWKGRPGP
Trigger: GGGCCCTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACTCGGCAATGCCTTGGGCATGATCGGGGTTGCAGGAGGCCTGGCAGCCACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp CTGCGGGTCCGGCTTCAGGCCTCCAAGGGTGGCTGCCAGGCCTCCTaGAACCCCGATCATGCCCAAGGCATTGCCGAGTCGAGCTGTTCC +
Preference number: 5 (lower is better)
Translates to: LRVRLQASKGGCQAS*NPDHAQGIAESSCS
Trigger: GGAACAGCTCGACTCGGCAATGCCTTGGGCATGATCGGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGAAGCCGGACCCGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 90 bp CCCCGATCATGCCCAAGGCATTGCCGAGTCGAGCTGTTCCCTGAGTaGAAAGGCCGCCCAGGGCCCCAACACAGCACAAGCCTGAGCCCA +
Preference number: 5 (lower is better)
Translates to: PRSCPRHCRVELFPE*KGRPGPQHSTSLSP
Trigger: TGGGCTCAGGCTTGTGCTGTGTTGGGGCCCTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACTCGGCAATGCCTTGGGCATGATCGGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 90 bp GCAACCCCGATCATGCCCAAGGCATTGCCGAGTCGAGCTGTTCCCTaGGTGGAAAGGCCGCCCAGGGCCCCAACACAGCACAAGCCTGAG +
Preference number: 5 (lower is better)
Translates to: ATPIMPKALPSRAVP*VERPPRAPTQHKPE
Trigger: CTCAGGCTTGTGCTGTGTTGGGGCCCTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACTCGGCAATGCCTTGGGCATGATCGGGGTTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp TCAGGCCTCCAAGGGTGGCTGCCAGGCCTCCTGCAACCCCGATCATaGCCAAGGCATTGCCGAGTCGAGCTGTTCCCTGAGTGGAAAGGC +
Preference number: 5 (lower is better)
Translates to: SGLQGWLPGLLQPRS*PRHCRVELFPEWKG
Trigger: GCCTTTCCACTCAGGGAACAGCTCGACTCGGCAATGCCTTGGGCATGATCGGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 90 bp ACATCTGAGCTAACAGCTGCGGGTCCGGCTTCAGGCCTCCAAGGGTaGCTGCCAGGCCTCCTGCAACCCCGATCATGCCCAAGGCATTGC +
Preference number: 5 (lower is better)
Translates to: TSELTAAGPASGLQG*LPGLLQPRSCPRHC
Trigger: GCAATGCCTTGGGCATGATCGGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGAAGCCGGACCCGCAGCTGTTAGCTCAGATGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 90 bp ATCGTCAGGCCGATGGTGCCACCCATTGCCATTGCTCCAGACATCTaGGCTAACAGCTGCGGGTCCGGCTTCAGGCCTCCAAGGGTGGCT +
Preference number: 5 (lower is better)
Translates to: IVRPMVPPIAIAPDI*ANSCGSGFRPPRVA
Trigger: AGCCACCCTTGGAGGCCTGAAGCCGGACCCGCAGCTGTTAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp TTGGAAGCTTCGCCTGCGCCTGATTCCACGACAACATTGAAGCCCTaGTTGACCAGGGCCTGGACCCCCGCAGGAGACAATGCAACTCGC +
Preference number: 5 (lower is better)
Translates to: LEASPAPDSTTTLKP*LTRAWTPAGDNATR
Trigger: GCGAGTTGCATTGTCTCCTGCGGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGCAGGCGAAGCTTCCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp AGCCAGGGAGCGGTTCATGGCCACACACATGATGTACGACAGGATTaGACCAGAGGAGCCGATGAGCGCGCCCACGATGGTCAGCAGGTT +
Preference number: 5 (lower is better)
Translates to: SQGAVHGHTHDVRQD*TRGADERAHDGQQV
Trigger: AACCTGCTGACCATCGTGGGCGCGCTCATCGGCTCCTCTGGTGCAATCCTGTCGTACATCATGTGTGTGGCCATGAACCGCTCCCTGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTCGCCAGCAGGCCTGCATaGAGTGCGTGCCTTCCAGGG +
Preference number: 5 (lower is better)
Translates to: QGSKGKWQQQQRCEFGGFASRPA*SACLPG
Trigger: CCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGGC...GAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp CAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTCACATTGAAGCCCTGCTaGACCAGGGCCTGGACCCCC +
Preference number: 5 (lower is better)
Translates to: QGSKGKWQQQQRCEFGGFTLKPC*TRAWTP
Trigger: GGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGT...GAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS CCA 90 bp GCCCAGACAGGTGATGCCCGTGGTAAAGCTAGGGTCAGCCATAAATaGGATTATCCCACCCACGCTAGCAGCCAGCAGGCCTGCATTGAG +
Preference number: 5 (lower is better)
Translates to: AQTGDARGKARVSHK*DYPTHASSQQACIE
Trigger: CTCAATGCAGGCCTGCTGGCTGCTAGCGTGGGTGGGATAATCCCATTTATGGCTGACCCTAGCTTTACCACGGGCATCACCTGTCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGGTCATCTGGGAACTaGGAAGCTTCGCCTGCGCCT +
Preference number: 5 (lower is better)
Translates to: LPRTRKAQKASGSNSSAVRSSGN*EASPAP
Trigger: AGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACCT...CACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp AGGGAAGACCTCGAGAGCTCACTGTCTCTCCTAGATGCCAAGAATCAATGTGCCCTGCGCCCATCGACTTaGCTGCCCCCGCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: REDLESSLSLLDAKNQCALRPST*LPPQKR
Trigger: TCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCAG...GGCACATTGATTCTTGGCATCTAGGAGAGACAGTGAGCTCTCGAGGTCTTCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTGCCAGCAGGCCTGCATaGAGTGCGTGCCTTCCAGGG +
Preference number: 5 (lower is better)
Translates to: LLIYERLLSLFLQPKASAASRPA*SACLPG
Trigger: CCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGGC...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS TCA 90 bp TGCTCTGTAGAGGTCATCTGGGAACTTGGAAGCTTCGCCTGCGCCTaGTTCCACGACAACATTGAAGCCCTGCTTGACCAGGGCCTGGAC +
Preference number: 5 (lower is better)
Translates to: CSVEVIWELGSFACA*FHDNIEALLDQGLD
Trigger: GTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACCTCTACAGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp ATCAGAAGCCAGAACTTCCTTCATCCCTTGGATCTGGGCCCCTGCTaGTCTGTAGAGGTCATCTGGGAACTTGGAAGCTTCGCCTGCGCC +
Preference number: 5 (lower is better)
Translates to: IRSQNFLHPLDLGPC*SVEVIWELGSFACA
Trigger: GGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACCTCTACAGAGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGTTCTGGCTTCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp GAACTGTTCCAAAGCAGCAGCTCTTGTATCAAATCCTCGGACAACTaGGCCCATCGACTTTGCTGCCCCCGCAGAAGCGAGCCCAGCAAC +
Preference number: 5 (lower is better)
Translates to: ELFQSSSSCIKSSDN*AHRLCCPRRSEPSN
Trigger: GTTGCTGGGCTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCAGTTGTCCGAGGATTTGATACAAGAGCTGCTGCTTTGGAACAGTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp GCAAGTCGGAAATCTGGATCCGCTTTGCGATCGTCAGGCCGATGGTaGCACCCATTGCCATTGCTCCAGACATCTGAGCTAACAGCTGCG +
Preference number: 5 (lower is better)
Translates to: ASRKSGSALRSSGRW*HPLPLLQTSELTAA
Trigger: CGCAGCTGTTAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGACTTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp GAAAGCAGCGACCAACTGAGGCAAGTCGGAAATCTGGATCCGCTTTaGGATCGTCAGGCCGATGGTGCCACCCATTGCCATTGCTCCAGA +
Preference number: 5 (lower is better)
Translates to: ESSDQLRQVGNLDPL*DRQADGATHCHCSR
Trigger: TCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGACTTGCCTCAGTTGGTCGCTGCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 90 bp GCGCCTGATTCCACGACAACATTGAAGCCCTGCTTGACCAGGGCCTaGACCCCCGCAGGAGACAATGCAACTCGCTTCTCGTTTTGGAAA +
Preference number: 5 (lower is better)
Translates to: APDSTTTLKPCLTRA*TPAGDNATRFSFWK
Trigger: TTTCCAAAACGAGAAGCGAGTTGCATTGTCTCCTGCGGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTATGGGGGCCCTCACTTaGACCACCAGATCAGAAGCC +
Preference number: 5 (lower is better)
Translates to: PRTRKAQKASGSNSSAVSMGALT*TTRSEA
Trigger: GGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCAT...ACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS CCA 90 bp GAGGCAAGTCGGAAATCTGGATCCGCTTTGCGATCGTCAGGCCGATaGTGCCACCCATTGCCATTGCTCCAGACATCTGAGCTAACAGCT +
Preference number: 5 (lower is better)
Translates to: EASRKSGSALRSSGR*CHPLPLLQTSELTA
Trigger: AGCTGTTAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGACTTGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CGCTGTGAGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCCCCTAGGGTCACTTCGATGGTGCCACCCATaGCCATTGCTCCAGACATCT +
Preference number: 5 (lower is better)
Translates to: RCEFGGFLTASSLPLGSLRWCHP*PLLQTS
Trigger: AGATGTCTGGAGCAATGGCAATGGGTGGCACCATCG...AAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS CCA 90 bp CTGAGGCAAGTCGGAAATCTGGATCCGCTTTGCGATCGTCAGGCCTaGAATCAGAGCTGTGCTGATAAGGATGTCCACCTCCTTGCACTG +
Preference number: 5 (lower is better)
Translates to: LRQVGNLDPLCDRQA*NQSCADKDVHLLAL
Trigger: CAGTGCAAGGAGGTGGACATCCTTATCAGCACAGCTCTGATTCCAGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGACTTGCCTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069902.13
CDS-3UTR CAA 90 bp CAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGGAGGCTTCGATTCCACGACAACATaGAAGCCCTGCTTGACCAGG +
Preference number: 5 (lower is better)
Translates to: QGSKGKWQQQQRCEFGGFDSTTT*KPCLTR
Trigger: CCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATC...GAAGCCTCCAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp CGCTGTGAGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCCCCTAGGGTCACTTGAGCTATTGTCACTCTaGGAACCTGGTCCATCGCCA +
Preference number: 5 (lower is better)
Translates to: RCEFGGFLTASSLPLGSLELLSL*EPGPSP
Trigger: TGGCGATGGACCAGGTTCCAAGAGTGACAATAGCTC...AAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGACTGCGCCCATCGACTTaGCTGCCCCCGCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRLRPST*LPPQKR
Trigger: TCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCAG...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CGCTGTGAGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCCCCTAGGGTCACTTTTTCGCGTATCCTCCTaGGCCCTCACCAGATTCCTT +
Preference number: 5 (lower is better)
Translates to: RCEFGGFLTASSLPLGSLFRVSS*ALTRFL
Trigger: AAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAAA...AAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTGTCAGCAGGTTGTTGTaGAGCAGGAAGCCCTCGGCA +
Preference number: 5 (lower is better)
Translates to: LLIYERLLSLFLQPKASAVSRLL*SRKPSA
Trigger: TGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGAC...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTGGGTCCGTGGGTCGCTaGAACATGTCCAGCATTCTC +
Preference number: 5 (lower is better)
Translates to: LLIYERLLSLFLQPKASAGSVGR*NMSSIL
Trigger: GAGAATGCTGGACATGTTCAAGCGACCCACGGACCC...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CTCCCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGCACCTCCTTGCACTGTaGAGCAAAGAGCTTCATTTC +
Preference number: 5 (lower is better)
Translates to: LPRTRKAQKASGSNSSAVHLLAL*SKELHF
Trigger: GAAATGAAGCTCTTTGCTCAACAGTGCAAGGAGGTG...CACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCGCCAGCAGGCCTGCATaGAGTGCGTGCCTTCCAGGG +
Preference number: 5 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFASRPA*SACLPG
Trigger: CCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGGC...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AGGGAAGACCTCGAGAGCTCACTGTCTCTCCTAGATGCCAAGAATCAATGTGCCATGGTCAGCAGGTTGTaGTTGAGCAGGAAGCCCTCG +
Preference number: 5 (lower is better)
Translates to: REDLESSLSLLDAKNQCAMVSRL*LSRKPS
Trigger: CGAGGGCTTCCTGCTCAACAACAACCTGCTGACCAT...GGCACATTGATTCTTGGCATCTAGGAGAGACAGTGAGCTCTCGAGGTCTTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp AGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGGTTTTCCACCAGCTGTaGACGTTGTGCCATAGCCTC +
Preference number: 5 (lower is better)
Translates to: RTRKAQKASGSNSSAVSLVFHQL*TLCHSL
Trigger: GAGGCTATGGCACAACGTCAACAGCTGGTGGAAAAC...CAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp AGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGTGCCACCCATTGCCATaGCTCCAGACATCTGAGCTA +
Preference number: 5 (lower is better)
Translates to: RTRKAQKASGSNSSAVSLCHPLP*LQTSEL
Trigger: TAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCA...CAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS GCA 90 bp AAAATGTGGATACTCTACGATGTACTCGGCCATGCAGGTAAGAACTaGTGCCAGCCCCACCAAACTGTGGAAAGCAGCGACCAACTGAGG +
Preference number: 5 (lower is better)
Translates to: KMWILYDVLGHAGKN*CQPHQTVESSDQLR
Trigger: CCTCAGTTGGTCGCTGCTTTCCACAGTTTGGTGGGGCTGGCAGCAGTTCTTACCTGCATGGCCGAGTACATCGTAGAGTATCCACATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTCACCAGCTGTTGACGTaGTGCCATAGCCTCCAAGAA +
Preference number: 5 (lower is better)
Translates to: LLIYERLLSLFLQPKASAHQLLT*CHSLQE
Trigger: TTCTTGGAGGCTATGGCACAACGTCAACAGCTGGTG...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CCAAGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTACTGCGTTGTCCAGGTaGATTTCTGTATGTGTGCCA +
Preference number: 5 (lower is better)
Translates to: PRTRKAQKASGSNSSAVSTALSR*ISVCVP
Trigger: TGGCACACATACAGAAATCAACCTGGACAACGCAGT...ACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS CCA 90 bp ACCTACGAAGGTGCCACCAGGGAGCAGATACAGATAATTATACTCTaGAGGGTCCGTGGGTCGCTTGAACATGTCCAGCATTCTCTGAGT +
Preference number: 5 (lower is better)
Translates to: TYEGATREQIQIIIL*RVRGSLEHVQHSLS
Trigger: ACTCAGAGAATGCTGGACATGTTCAAGCGACCCACGGACCCTCCAGAGTATAATTATCTGTATCTGCTCCCTGGTGGCACCTTCGTAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGAGGTCATCTGGGAACTaGGAAGCTTCGCCTGCGCCT +
Preference number: 5 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQERSSGN*EASPAP
Trigger: AGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACCT...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGATGGGGGCCCTCACTTaGACCACCAGATCAGAAGCC +
Preference number: 5 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEMGALT*TTRSEA
Trigger: GGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCAT...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTGAGCAAGTCTGGATTTaGGGCTGGGTAGATGAAGCT +
Preference number: 5 (lower is better)
Translates to: LLIYERLLSLFLQPKASAEQVWI*GWVDEA
Trigger: AGCTTCATCTACCCAGCCCAAAATCCAGACTTGCTC...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGTCAGCACCAAGGGATTaGAACTGTTCCAAAGCAGCA +
Preference number: 5 (lower is better)
Translates to: RTRKAQKASGSNSSAVSLSAPRD*NCSKAA
Trigger: TGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTGA...CAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTGCGTCACATGTCTTCTaGGCGTCCCCCAGAAGCATA +
Preference number: 5 (lower is better)
Translates to: VRLLWVLRALLIYERLLSASHVF*ASPRSI
Trigger: TATGCTTCTGGGGGACGCCAAGAAGACATGTGACGC...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS TCA 90 bp TATGGAATTCCTGGCTTTACCGGGGATTTACACCACAGTGCCTGGTaGGTACGAAGCGTTCGTACAAAGTCTCTCTTCCCAGGTAGAACC +
Preference number: 5 (lower is better)
Translates to: YGIPGFTGDLHHSAW*VRSVRTKSLFPGRT
Trigger: GGTTCTACCTGGGAAGAGAGACTTTGTACGAACGCTTCGTACTCACCAGGCACTGTGGTGTAAATCCCCGGTAAAGCCAGGAATTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp CTGCTTATATGGAATTCCTGGCTTTACCGGGGATTTACACCACAGTaGCTGGTGAGTACGAAGCGTTCGTACAAAGTCTCTCTTCCCAGG +
Preference number: 5 (lower is better)
Translates to: LLIWNSWLYRGFTPQ*LVSTKRSYKVSLPR
Trigger: CCTGGGAAGAGAGACTTTGTACGAACGCTTCGTACTCACCAGGCACTGTGGTGTAAATCCCCGGTAAAGCCAGGAATTCCATATAAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 90 bp ATCGGCAATGGGGTACTGAGCTTTAGCAGCACAGAGCCCATACCCTaGAGTAATAACAATGCTGTTAGCTTCCCGGATCATCTCAACTGC +
Preference number: 5 (lower is better)
Translates to: IGNGVLSFSSTEPIP*SNNNAVSFPDHLNC
Trigger: GCAGTTGAGATGATCCGGGAAGCTAACAGCATTGTTATTACTCCAGGGTATGGGCTCTGTGCTGCTAAAGCTCAGTACCCCATTGCCGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AGAACACGCAAGGCTCAAAAGGCAAGTGGCAGCAACAGCAGCGCTGTGAGTTTGTTAGAGGACCCCAAGTaGCTAAGGAAAGGACATGAA +
Preference number: 5 (lower is better)
Translates to: RTRKAQKASGSNSSAVSLLEDPK*LRKGHE
Trigger: TTCATGTCCTTTCCTTAGCAACTTGGGGTCCTCTAA...CAAACTCACAGCGCTGCTGTTGCTGCCACTTGCCTTTTGAGCCTTGCGTGTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTGATTCCACGACAACATaGAAGCCCTGCTTGACCAGG +
Preference number: 5 (lower is better)
Translates to: VRLLWVLRALLIYERLLSDSTTT*KPCLTR
Trigger: CCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATC...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGCTGCGCCCATCGACTTaGCTGCCCCCGCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKLRPST*LPPQKR
Trigger: TCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCAG...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTCACCTCCTTGCACTGTaGAGCAAAGAGCTTCATTTC +
Preference number: 5 (lower is better)
Translates to: LLIYERLLSLFLQPKASAHLLAL*SKELHF
Trigger: GAAATGAAGCTCTTTGCTCAACAGTGCAAGGAGGTG...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CGCTGTGAGTTTGGAGGCTTCTTGACAGCCTCGTCTCTTCCCCTAGGGTCACTTTTGACGTGGCATCCATaGCAAAATGTGGATACTCTA +
Preference number: 5 (lower is better)
Translates to: RCEFGGFLTASSLPLGSLLTWHP*QNVDTL
Trigger: TAGAGTATCCACATTTTGCAATGGATGCCACGTCAA...AAGTGACCCTAGGGGAAGAGACGAGGCTGTCAAGAAGCCTCCAAACTCACAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS TCA 90 bp TTCTGTATGTGTGCCAGAAATTTCCATGGGTTTTCCACCAGCTGTTaGCGTTGTGCCATAGCCTCCAAGAATGACATTAGCCAGGGAGCG +
Preference number: 5 (lower is better)
Translates to: FCMCARNFHGFSTSC*RCAIASKNDISQGA
Trigger: CGCTCCCTGGCTAATGTCATTCTTGGAGGCTATGGCACAACGTCAACAGCTGGTGGAAAACCCATGGAAATTTCTGGCACACATACAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 90 bp GACCGGCATGCCTGCAATTATAGAATTGGGGTCTTCTTGAGCCGCTaGATTCACAGTGTCGTTTGCTCCAATGACAAGAACCAAGTCGGT +
Preference number: 5 (lower is better)
Translates to: DRHACNYRIGVFLSR*IHSVVCSNDKNQVG
Trigger: ACCGACTTGGTTCTTGTCATTGGAGCAAACGACACTGTGAATTCAGCGGCTCAAGAAGACCCCAATTCTATAATTGCAGGCATGCCGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS TCA 90 bp ACCTCAAGGACCGGCATGCCTGCAATTATAGAATTGGGGTCTTCTTaGGCCGCTGAATTCACAGTGTCGTTTGCTCCAATGACAAGAACC +
Preference number: 5 (lower is better)
Translates to: TSRTGMPAIIELGSS*AAEFTVSFAPMTRT
Trigger: GGTTCTTGTCATTGGAGCAAACGACACTGTGAATTCAGCGGCTCAAGAAGACCCCAATTCTATAATTGCAGGCATGCCGGTCCTTGAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS TCA 90 bp GGAGCAGATACAGATAATTATACTCTGGAGGGTCCGTGGGTCGCTTaGACATGTCCAGCATTCTCTGAGTCACCAGAAAACCACCTGGAA +
Preference number: 5 (lower is better)
Translates to: GADTDNYTLEGPWVA*TCPAFSESPENHLE
Trigger: TTCCAGGTGGTTTTCTGGTGACTCAGAGAATGCTGGACATGTTCAAGCGACCCACGGACCCTCCAGAGTATAATTATCTGTATCTGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 90 bp TGTTATAGCCACCGTAGAGAGCAGCTAAATATCCACCTACGAAGGTaGCACCAGGGAGCAGATACAGATAATTATACTCTGGAGGGTCCG +
Preference number: 5 (lower is better)
Translates to: CYSHRREQLNIHLRR*HQGADTDNYTLEGP
Trigger: CGGACCCTCCAGAGTATAATTATCTGTATCTGCTCCCTGGTGGCACCTTCGTAGGTGGATATTTAGCTGCTCTCTACGGTGGCTATAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 90 bp GGCCATGGAACTGAGAGCATCATAGCCCTGAGCTATTGTCACTCTTaGAACCTGGTCCATCGCCAGAACTGTGGTTTTTCTTTCAGAAAG +
Preference number: 5 (lower is better)
Translates to: GHGTESIIALSYCHS*NLVHRQNCGFSFRK
Trigger: CTTTCTGAAAGAAAAACCACAGTTCTGGCGATGGACCAGGTTCCAAGAGTGACAATAGCTCAGGGCTATGATGCTCTCAGTTCCATGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAACATTGAAGCCCTGCTaGACCAGGGCCTGGACCCCC +
Preference number: 5 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTTLKPC*TRAWTP
Trigger: GGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGT...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGACATTGAAGCCCTGCTaGACCAGGGCCTGGACCCCC +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKTLKPC*TRAWTP
Trigger: GGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGT...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAGATTCCACGACAACATaGAAGCCCTGCTTGACCAGG +
Preference number: 5 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRDSTTT*KPCLTR
Trigger: CCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATC...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTGAGCAAGTCTGGATTTaGGGCTGGGTAGATGAAGCT +
Preference number: 5 (lower is better)
Translates to: VRLLWVLRALLIYERLLSEQVWI*GWVDEA
Trigger: AGCTTCATCTACCCAGCCCAAAATCCAGACTTGCTC...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTGCCAGCAGGCCTGCATaGAGTGCGTGCCTTCCAGGG +
Preference number: 5 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIASRPA*SACLPG
Trigger: CCCTGGAAGGCACGCACTCAATGCAGGCCTGCTGGC...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGCACCAGCTGTTGACGTaGTGCCATAGCCTCCAAGAA +
Preference number: 5 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEHQLLT*CHSLQE
Trigger: TTCTTGGAGGCTATGGCACAACGTCAACAGCTGGTG...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGGTTTTCCACCAGCTGTaGACGTTGTGCCATAGCCTC +
Preference number: 5 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEVFHQL*TLCHSL
Trigger: GAGGCTATGGCACAACGTCAACAGCTGGTGGAAAAC...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGATGCCACCCATTGCCATaGCTCCAGACATCTGAGCTA +
Preference number: 5 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRCHPLP*LQTSEL
Trigger: TAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCA...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGAGGTCATCTGGGAACTaGGAAGCTTCGCCTGCGCCT +
Preference number: 5 (lower is better)
Translates to: DLENLHCFVRLLWVLRALRSSGN*EASPAP
Trigger: AGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACCT...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGATGGGGGCCCTCACTTaGACCACCAGATCAGAAGCC +
Preference number: 5 (lower is better)
Translates to: DLENLHCFVRLLWVLRALMGALT*TTRSEA
Trigger: GGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCAT...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACACATAGCCCTGAGCTATaGTCACTCTTGGAACCTGGT +
Preference number: 5 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTHSPEL*SLLEPG
Trigger: ACCAGGTTCCAAGAGTGACAATAGCTCAGGGCTATG...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGCATAGCCCTGAGCTATaGTCACTCTTGGAACCTGGT +
Preference number: 5 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQEHSPEL*SLLEPG
Trigger: ACCAGGTTCCAAGAGTGACAATAGCTCAGGGCTATG...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGCTGCGCCCATCGACTTaGCTGCCCCCGCAGAAGCGA +
Preference number: 5 (lower is better)
Translates to: LCHQRRSYITFMNSFITQLRPST*LPPQKR
Trigger: TCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCAG...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCGTCAGCAGGTTGTTGTaGAGCAGGAAGCCCTCGGCA +
Preference number: 5 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFVSRLL*SRKPSA
Trigger: TGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGAC...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCCACCAGCTGTTGACGTaGTGCCATAGCCTCCAAGAA +
Preference number: 5 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFHQLLT*CHSLQE
Trigger: TTCTTGGAGGCTATGGCACAACGTCAACAGCTGGTG...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp TTGCTCATCTATGAACGCCTCCTTTCTCTGTTCCTGCAACCGAAGGCATCGGCTCCAAACCTGACTTTTTaGCCTTGTTCAGTAAGCATC +
Preference number: 5 (lower is better)
Translates to: LLIYERLLSLFLQPKASAPNLTF*PCSVSI
Trigger: GATGCTTACTGAACAAGGCAAAAAAGTCAGGTTTGG...AGCCGATGCCTTCGGTTGCAGGAACAGAGAAAGGAGGCGTTCATAGATGAGCAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCGGGTCCGTGGGTCGCTaGAACATGTCCAGCATTCTC +
Preference number: 5 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFGSVGR*NMSSIL
Trigger: GAGAATGCTGGACATGTTCAAGCGACCCACGGACCC...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS TCA 90 bp CTGCTAAAACAACAGCCTTATAACCAGAGATGTTGGCCATGGAACTaGGAGCATCATAGCCCTGAGCTATTGTCACTCTTGGAACCTGGT +
Preference number: 5 (lower is better)
Translates to: LLKQQPYNQRCWPWN*EHHSPELLSLLEPG
Trigger: ACCAGGTTCCAAGAGTGACAATAGCTCAGGGCTATGATGCTCTCAGTTCCATGGCCAACATCTCTGGTTATAAGGCTGTTGTTTTAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 90 bp CAGATTCCTTCAAGTCAACCTCCAAGGGTTCAGCACCAAGGGATTTaGACTGTTCCAAAGCAGCAGCTCTTGTATCAAATCCTCGGACAA +
Preference number: 5 (lower is better)
Translates to: QIPSSQPPRVQHQGI*TVPKQQLLYQILGQ
Trigger: TTGTCCGAGGATTTGATACAAGAGCTGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTGAACCCTTGGAGGTTGACTTGAAGGAATCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 90 bp TTGCCTTGTTCAGTAAGCATCTTCACCAAATCGGCAATGGGGTACTaGGCTTTAGCAGCACAGAGCCCATACCCTGGAGTAATAACAATG +
Preference number: 5 (lower is better)
Translates to: LPCSVSIFTKSAMGY*ALAAQSPYPGVITM
Trigger: CATTGTTATTACTCCAGGGTATGGGCTCTGTGCTGCTAAAGCTCAGTACCCCATTGCCGATTTGGTGAAGATGCTTACTGAACAAGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GTGAGGCTTCTTTGGGTCTTGAGAGCTTTGCTCATCTATGAACGCCTCCTTTCTTTAGAGGACCCCAAGTaGCTAAGGAAAGGACATGAA +
Preference number: 5 (lower is better)
Translates to: VRLLWVLRALLIYERLLSLEDPK*LRKGHE
Trigger: TTCATGTCCTTTCCTTAGCAACTTGGGGTCCTCTAA...AGAAAGGAGGCGTTCATAGATGAGCAAAGCTCTCAAGACCCAAAGAAGCCTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAAACTCGCTTCTCGTTTaGGAAAATCTCCTTGGGGAC +
Preference number: 5 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRNSLLV*ENLLGD
Trigger: GTCCCCAAGGAGATTTTCCAAAACGAGAAGCGAGTT...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGACATTGAAGCCCTGCTaGACCAGGGCCTGGACCCCC +
Preference number: 5 (lower is better)
Translates to: NHLMLALCHQRRSYITFMTLKPC*TRAWTP
Trigger: GGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGT...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGGGTCCGTGGGTCGCTaGAACATGTCCAGCATTCTC +
Preference number: 5 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTGSVGR*NMSSIL
Trigger: GAGAATGCTGGACATGTTCAAGCGACCCACGGACCC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AAGATGAACAGCAGTGTTCCTGAGGGAAGACCTCGAGAGCTCACTGTCTCTCCTACTAACCTGACTTTTTaGCCTTGTTCAGTAAGCATC +
Preference number: 5 (lower is better)
Translates to: KMNSSVPEGRPRELTVSPTNLTF*PCSVSI
Trigger: GATGCTTACTGAACAAGGCAAAAAAGTCAGGTTAGT...AGGAGAGACAGTGAGCTCTCGAGGTCTTCCCTCAGGAACACTGCTGTTCATCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS TCA 90 bp TCCGCCGATGTAAGTGCCAAGGTAAGCCACAATCTTGGTGAAATTTaGCGTGGCATCCATTGCAAAATGTGGATACTCTACGATGTACTC +
Preference number: 5 (lower is better)
Translates to: SADVSAKVSHNLGEI*RGIHCKMWILYDVL
Trigger: GAGTACATCGTAGAGTATCCACATTTTGCAATGGATGCCACGTCAAATTTCACCAAGATTGTGGCTTACCTTGGCACTTACATCGGCGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGGAGCTATTGTCACTCTaGGAACCTGGTCCATCGCCA +
Preference number: 5 (lower is better)
Translates to: DLENLHCFVRLLWVLRALELLSL*EPGPSP
Trigger: TGGCGATGGACCAGGTTCCAAGAGTGACAATAGCTC...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGTTTCGCGTATCCTCCTaGGCCCTCACCAGATTCCTT +
Preference number: 5 (lower is better)
Translates to: DLENLHCFVRLLWVLRALFRVSS*ALTRFL
Trigger: AAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAAA...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGATGGTCAGCAGGTTGTaGTTGAGCAGGAAGCCCTCG +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKMVSRL*LSRKPS
Trigger: CGAGGGCTTCCTGCTCAACAACAACCTGCTGACCAT...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCCACCAGCTGTTGACGTaGTGCCATAGCCTCCAAGAA +
Preference number: 5 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFHQLLT*CHSLQE
Trigger: TTCTTGGAGGCTATGGCACAACGTCAACAGCTGGTG...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCTTAGAGGACCCCAAGTaGCTAAGGAAAGGACATGAA +
Preference number: 5 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFLEDPK*LRKGHE
Trigger: TTCATGTCCTTTCCTTAGCAACTTGGGGTCCTCTAA...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATATGGGGGCCCTCACTTaGACCACCAGATCAGAAGCC +
Preference number: 5 (lower is better)
Translates to: RSYITFMNSFITQMVAFHMGALT*TTRSEA
Trigger: GGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCAT...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGGAGCAAGTCTGGATTTaGGGCTGGGTAGATGAAGCT +
Preference number: 5 (lower is better)
Translates to: DLENLHCFVRLLWVLRALEQVWI*GWVDEA
Trigger: AGCTTCATCTACCCAGCCCAAAATCCAGACTTGCTC...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATAGATTTTAGGCAGGGATGGAGCCATGATAAAGAGTGGGAGGAAGTAAAATTCGAGCAAGTCTGGATTTaGGGCTGGGTAGATGAAGCT +
Preference number: 5 (lower is better)
Translates to: IDFRQGWSHDKEWEEVKFEQVWI*GWVDEA
Trigger: AGCTTCATCTACCCAGCCCAAAATCCAGACTTGCTC...GAATTTTACTTCCTCCCACTCTTTATCATGGCTCCATCCCTGCCTAAAATCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGAGCTATTGTCACTCTaGGAACCTGGTCCATCGCCA +
Preference number: 5 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTELLSL*EPGPSP
Trigger: TGGCGATGGACCAGGTTCCAAGAGTGACAATAGCTC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATTTCGCGTATCCTCCTaGGCCCTCACCAGATTCCTT +
Preference number: 5 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTFRVSS*ALTRFL
Trigger: AAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAAA...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATTTGGCATGATCAATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGACGTGGCATCCATaGCAAAATGTGGATACTCTA +
Preference number: 5 (lower is better)
Translates to: IWHDQSGVWLRCKRTGQELTWHP*QNVDTL
Trigger: TAGAGTATCCACATTTTGCAATGGATGCCACGTCAA...CTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGATTGATCATGCCAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATGTCAGCAGGTTGTTGTaGAGCAGGAAGCCCTCGGCA +
Preference number: 5 (lower is better)
Translates to: RSYITFMNSFITQMVAFHVSRLL*SRKPSA
Trigger: TGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGAC...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTATGGTCAGCAGGTTGTaGTTGAGCAGGAAGCCCTCG +
Preference number: 5 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIMVSRL*LSRKPS
Trigger: CGAGGGCTTCCTGCTCAACAACAACCTGCTGACCAT...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACAGTTTTCCACCAGCTGTaGACGTTGTGCCATAGCCTC +
Preference number: 5 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTVFHQL*TLCHSL
Trigger: GAGGCTATGGCACAACGTCAACAGCTGGTGGAAAAC...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AGACCCATGAAAAATGATCTAAGTGTGCACGGTCCTCCACTCTTCTGCCTAACAATCATCTCAACTGCGTaGTCCAGGTTGATTTCTGTA +
Preference number: 5 (lower is better)
Translates to: RPMKNDLSVHGPPLFCLTIISTA*SRLISV
Trigger: TACAGAAATCAACCTGGACAACGCAGTTGAGATGAT...TGTTAGGCAGAAGAGTGGAGGACCGTGCACACTTAGATCATTTTTCATGGGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000109204.8
CDS-3UTR CAA 90 bp GTGGACAAAATACTCTTGCTTTTTGGGCAATGGCGACAGTACATAGGTAGGCGAATCATCTCAACTGCGTaGTCCAGGTTGATTTCTGTA +
Preference number: 5 (lower is better)
Translates to: VDKILLLFGQWRQYIGRRIISTA*SRLISV
Trigger: TACAGAAATCAACCTGGACAACGCAGTTGAGATGAT...TCGCCTACCTATGTACTGTCGCCATTGCCCAAAAAGCAAGAGTATTTTGTCCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTCGATGGTGCCACCCATaGCCATTGCTCCAGACATCT +
Preference number: 5 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIRWCHP*PLLQTS
Trigger: AGATGTCTGGAGCAATGGCAATGGGTGGCACCATCG...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTCAGCAGGTTGTaGTTGAGCAGGAAGCCCTCG +
Preference number: 5 (lower is better)
Translates to: LCHQRRSYITFMNSFITQMVSRL*LSRKPS
Trigger: CGAGGGCTTCCTGCTCAACAACAACCTGCTGACCAT...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGACTGCGTTGTCCAGGTaGATTTCTGTATGTGTGCCA +
Preference number: 5 (lower is better)
Translates to: DLENLHCFVRLLWVLRALTALSR*ISVCVP
Trigger: TGGCACACATACAGAAATCAACCTGGACAACGCAGT...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp ATCCGGAGTATGGCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCCCAAACCTGACTTTTTaGCCTTGTTCAGTAAGCATC +
Preference number: 5 (lower is better)
Translates to: IRSMAKMQENRSGVDKGFPNLTF*PCSVSI
Trigger: GATGCTTACTGAACAAGGCAAAAAAGTCAGGTTTGG...GAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGCCATACTCCGGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGATGGTTGCATTCCATGCGTCACATGTCTTCTaGGCGTCCCCCAGAAGCATA +
Preference number: 5 (lower is better)
Translates to: RSYITFMNSFITQMVAFHASHVF*ASPRSI
Trigger: TATGCTTCTGGGGGACGCCAAGAAGACATGTGACGC...ATGGAATGCAACCATCTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGCGATGGTGCCACCCATaGCCATTGCTCCAGACATCT +
Preference number: 5 (lower is better)
Translates to: LCHQRRSYITFMNSFITQRWCHP*PLLQTS
Trigger: AGATGTCTGGAGCAATGGCAATGGGTGGCACCATCG...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGGAGCTATTGTCACTCTaGGAACCTGGTCCATCGCCA +
Preference number: 5 (lower is better)
Translates to: NHLMLALCHQRRSYITFMELLSL*EPGPSP
Trigger: TGGCGATGGACCAGGTTCCAAGAGTGACAATAGCTC...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTCATAGCCCTGAGCTATaGTCACTCTTGGAACCTGGT +
Preference number: 5 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIHSPEL*SLLEPG
Trigger: ACCAGGTTCCAAGAGTGACAATAGCTCAGGGCTATG...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTCAGCACCAAGGGATTaGAACTGTTCCAAAGCAGCA +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKSAPRD*NCSKAA
Trigger: TGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTGA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GCTAAGATGCAAGAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCAGCACCAAGGGATTaGAACTGTTCCAAAGCAGCA +
Preference number: 5 (lower is better)
Translates to: AKMQENRSGVDKGFKLVTSAPRD*NCSKAA
Trigger: TGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTGA...TGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTCTTGCATCTTAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGTTTCGCGTATCCTCCTaGGCCCTCACCAGATTCCTT +
Preference number: 5 (lower is better)
Translates to: LCHQRRSYITFMNSFITQFRVSS*ALTRFL
Trigger: AAGGAATCTGGTGAGGGCCAAGGAGGATACGCGAAA...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGACTGCGTTGTCCAGGTaGATTTCTGTATGTGTGCCA +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKTALSR*ISVCVP
Trigger: TGGCACACATACAGAAATCAACCTGGACAACGCAGT...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTTAGAGGACCCCAAGTaGCTAAGGAAAGGACATGAA +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKLEDPK*LRKGHE
Trigger: TTCATGTCCTTTCCTTAGCAACTTGGGGTCCTCTAA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp CTTTGTCATCAGAGACGAAGCTACATCACTTTTATGAACTCATTTATTACTCAGCATAGCCCTGAGCTATaGTCACTCTTGGAACCTGGT +
Preference number: 5 (lower is better)
Translates to: LCHQRRSYITFMNSFITQHSPEL*SLLEPG
Trigger: ACCAGGTTCCAAGAGTGACAATAGCTCAGGGCTATG...CTGAGTAATAAATGAGTTCATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp CATTTATTACTCAGATGGTTGCATTCCATTCAAGCGCACTTAATACAGTCCATTCACCTCCTTGCACTGTaGAGCAAAGAGCTTCATTTC +
Preference number: 5 (lower is better)
Translates to: HLLLRWLHSIQAHLIQSIHLLAL*SKELHF
Trigger: GAAATGAAGCTCTTTGCTCAACAGTGCAAGGAGGTG...AATGGACTGTATTAAGTGCGCTTGAATGGAATGCAACCATCTGAGTAATAAATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GATCTTGAAAATCTCCATTGTTTTGTGAGGCTTCTTTGGGTCTTGAGAGCTTTGTTGACGTGGCATCCATaGCAAAATGTGGATACTCTA +
Preference number: 5 (lower is better)
Translates to: DLENLHCFVRLLWVLRALLTWHP*QNVDTL
Trigger: TAGAGTATCCACATTTTGCAATGGATGCCACGTCAA...CAAAGCTCTCAAGACCCAAAGAAGCCTCACAAAACAATGGAGATTTTCAAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp AACCATTTAATGTTAGCTCTTTGTCATCAGAGACGAAGCTACATCACTTTTATGTCAGCACCAAGGGATTaGAACTGTTCCAAAGCAGCA +
Preference number: 5 (lower is better)
Translates to: NHLMLALCHQRRSYITFMSAPRD*NCSKAA
Trigger: TGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTGA...CATAAAAGTGATGTAGCTTCGTCTCTGATGACAAAGAGCTAACATTAAATGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGTTGACGTGGCATCCATaGCAAAATGTGGATACTCTA +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKLTWHP*QNVDTL
Trigger: TAGAGTATCCACATTTTGCAATGGATGCCACGTCAA...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGATCATCTCAACTGCGTaGTCCAGGTTGATTTCTGTA +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKIISTA*SRLISV
Trigger: TACAGAAATCAACCTGGACAACGCAGTTGAGATGAT...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS-3UTR CAA 90 bp GAGAACAGGTCAGGAGTTGATAAAGGTTTCAAATTAGTCACATCTGGTGAAAAGCCAAACCTGACTTTTTaGCCTTGTTCAGTAAGCATC +
Preference number: 5 (lower is better)
Translates to: ENRSGVDKGFKLVTSGEKPNLTF*PCSVSI
Trigger: GATGCTTACTGAACAAGGCAAAAAAGTCAGGTTTGG...CTTTTCACCAGATGTGACTAATTTGAAACCTTTATCAACTCCTGACCTGTTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS GCA 72 bp CAGCTGCGGGTCCGGCTTCAGGCCTCCAAGGGTGGCTaGCAGGCCTCCTGCAACCCCGATCATGCCCAAGGC +
Preference number: 6 (lower is better)
Translates to: QLRVRLQASKGG*QASCNPDHAQG
Trigger: GCCTTGGGCATGATCGGGGTTGCAGGAGGCCTGGCAGCCACCCTTGGAGGCCTGAAGCCGGACCCGCAGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp CCGATGAGCGCGCCCACGATGGTCAGCAGGTTGTTGTaGAGCAGGAAGCCCTCGGCACACAGAGCCCAGCCC +
Preference number: 6 (lower is better)
Translates to: PMSAPTMVSRLL*SRKPSAHRAQP
Trigger: GGGCTGGGCTCTGTGTGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGACCATCGTGGGCGCGCTCATCGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp CAAGGGTGGCTGCCAGGCCTCCTGCAACCCCGATCATaGCCAAGGCATTGCCGAGTCGAGCTGTTCCCTGAG +
Preference number: 6 (lower is better)
Translates to: QGWLPGLLQPRS*PRHCRVELFPE
Trigger: CTCAGGGAACAGCTCGACTCGGCAATGCCTTGGGCATGATCGGGGTTGCAGGAGGCCTGGCAGCCACCCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 72 bp TGCCCAAGGCATTGCCGAGTCGAGCTGTTCCCTGAGTaGAAAGGCCGCCCAGGGCCCCAACACAGCACAAGC +
Preference number: 6 (lower is better)
Translates to: CPRHCRVELFPE*KGRPGPQHSTS
Trigger: GCTTGTGCTGTGTTGGGGCCCTGGGCGGCCTTTCCACTCAGGGAACAGCTCGACTCGGCAATGCCTTGGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp GAGCCGATGAGCGCGCCCACGATGGTCAGCAGGTTGTaGTTGAGCAGGAAGCCCTCGGCACACAGAGCCCAG +
Preference number: 6 (lower is better)
Translates to: EPMSAPTMVSRL*LSRKPSAHRAQ
Trigger: CTGGGCTCTGTGTGCCGAGGGCTTCCTGCTCAACAACAACCTGCTGACCATCGTGGGCGCGCTCATCGGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 90 bp GGATCCGCTTTGCGATCGTCAGGCCGATGGTGCCACCCATTGCCATaGCTCCAGACATCTGAGCTAACAGCTGCGGGTCCGGCTTCAGGC +
Preference number: 6 (lower is better)
Translates to: GSALRSSGRWCHPLP*LQTSELTAAGPASG
Trigger: GCCTGAAGCCGGACCCGCAGCTGTTAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp TCGCCTGCGCCTGATTCCACGACAACATTGAAGCCCTaGTTGACCAGGGCCTGGACCCCCGCAGGAGACAAT +
Preference number: 6 (lower is better)
Translates to: SPAPDSTTTLKP*LTRAWTPAGDN
Trigger: ATTGTCTCCTGCGGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGCAGGCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp CCTGCGCCTGATTCCACGACAACATTGAAGCCCTGCTaGACCAGGGCCTGGACCCCCGCAGGAGACAATGCA +
Preference number: 6 (lower is better)
Translates to: PAPDSTTTLKPC*TRAWTPAGDNA
Trigger: TGCATTGTCTCCTGCGGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 90 bp GAAGCTTCGCCTGCGCCTGATTCCACGACAACATTGAAGCCCTGCTaGACCAGGGCCTGGACCCCCGCAGGAGACAATGCAACTCGCTTC +
Preference number: 6 (lower is better)
Translates to: EASPAPDSTTTLKPC*TRAWTPAGDNATRF
Trigger: GAAGCGAGTTGCATTGTCTCCTGCGGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGCAGGCGAAGCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp GCGGTTCATGGCCACACACATGATGTACGACAGGATTaGACCAGAGGAGCCGATGAGCGCGCCCACGATGGT +
Preference number: 6 (lower is better)
Translates to: AVHGHTHDVRQD*TRGADERAHDG
Trigger: ACCATCGTGGGCGCGCTCATCGGCTCCTCTGGTGCAATCCTGTCGTACATCATGTGTGTGGCCATGAACCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 72 bp TCCACGACAACATTGAAGCCCTGCTTGACCAGGGCCTaGACCCCCGCAGGAGACAATGCAACTCGCTTCTCG +
Preference number: 6 (lower is better)
Translates to: STTTLKPCLTRA*TPAGDNATRFS
Trigger: CGAGAAGCGAGTTGCATTGTCTCCTGCGGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 90 bp TCTGGGAACTTGGAAGCTTCGCCTGCGCCTGATTCCACGACAACATaGAAGCCCTGCTTGACCAGGGCCTGGACCCCCGCAGGAGACAAT +
Preference number: 6 (lower is better)
Translates to: SGNLEASPAPDSTTT*KPCLTRAWTPAGDN
Trigger: ATTGTCTCCTGCGGGGGTCCAGGCCCTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGCAGGCGAAGCTTCCAAGTTCCCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 90 bp AAATCTGGATCCGCTTTGCGATCGTCAGGCCGATGGTGCCACCCATaGCCATTGCTCCAGACATCTGAGCTAACAGCTGCGGGTCCGGCT +
Preference number: 6 (lower is better)
Translates to: KSGSALRSSGRWCHP*PLLQTSELTAAGPA
Trigger: AGCCGGACCCGCAGCTGTTAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCCAGATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 90 bp GGAAAGCAGCGACCAACTGAGGCAAGTCGGAAATCTGGATCCGCTTaGCGATCGTCAGGCCGATGGTGCCACCCATTGCCATTGCTCCAG +
Preference number: 6 (lower is better)
Translates to: GKQRPTEASRKSGSA*RSSGRWCHPLPLLQ
Trigger: CTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGACTTGCCTCAGTTGGTCGCTGCTTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 72 bp GGGCCCCTGCTGCTCTGTAGAGGTCATCTGGGAACTTaGAAGCTTCGCCTGCGCCTGATTCCACGACAACAT +
Preference number: 6 (lower is better)
Translates to: GPLLLCRGHLGT*KLRLRLIPRQH
Trigger: ATGTTGTCGTGGAATCAGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACCTCTACAGAGCAGCAGGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 72 bp GGTGATGCCCGTGGTAAAGCTAGGGTCAGCCATAAATaGGATTATCCCACCCACGCTAGCAGCCAGCAGGCC +
Preference number: 6 (lower is better)
Translates to: GDARGKARVSHK*DYPTHASSQQA
Trigger: GGCCTGCTGGCTGCTAGCGTGGGTGGGATAATCCCATTTATGGCTGACCCTAGCTTTACCACGGGCATCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp TCCGCTTTGCGATCGTCAGGCCGATGGTGCCACCCATaGCCATTGCTCCAGACATCTGAGCTAACAGCTGCG +
Preference number: 6 (lower is better)
Translates to: SALRSSGRWCHP*PLLQTSELTAA
Trigger: CGCAGCTGTTAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp CGACCAACTGAGGCAAGTCGGAAATCTGGATCCGCTTaGCGATCGTCAGGCCGATGGTGCCACCCATTGCCA +
Preference number: 6 (lower is better)
Translates to: RPTEASRKSGSA*RSSGRWCHPLP
Trigger: TGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGACTTGCCTCAGTTGGTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp CAAAGCAGCAGCTCTTGTATCAAATCCTCGGACAACTaGGCCCATCGACTTTGCTGCCCCCGCAGAAGCGAG +
Preference number: 6 (lower is better)
Translates to: QSSSSCIKSSDN*AHRLCCPRRSE
Trigger: CTCGCTTCTGCGGGGGCAGCAAAGTCGATGGGCGCAGTTGTCCGAGGATTTGATACAAGAGCTGCTGCTTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp GCGCCTAACGTCGGGTTCACCATGGGGGCCCTCACTTaGACCACCAGATCAGAAGCCAGAACTTCCTTCATC +
Preference number: 6 (lower is better)
Translates to: APNVGFTMGALT*TTRSEARTSFI
Trigger: GATGAAGGAAGTTCTGGCTTCTGATCTGGTGGTCAAAGTGAGGGCCCCCATGGTGAACCCGACGTTAGGCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp GAGGTCATCTGGGAACTTGGAAGCTTCGCCTGCGCCTaGTTCCACGACAACATTGAAGCCCTGCTTGACCAG +
Preference number: 6 (lower is better)
Translates to: EVIWELGSFACA*FHDNIEALLDQ
Trigger: CTGGTCAAGCAGGGCTTCAATGTTGTCGTGGAATCAGGCGCAGGCGAAGCTTCCAAGTTCCCAGATGACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp GACCACCAGATCAGAAGCCAGAACTTCCTTCATCCCTaGGATCTGGGCCCCTGCTGCTCTGTAGAGGTCATC +
Preference number: 6 (lower is better)
Translates to: DHQIRSQNFLHP*DLGPCCSVEVI
Trigger: GATGACCTCTACAGAGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGTTCTGGCTTCTGATCTGGTGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp GGGCCCCAACACAGCACAAGCCTGAGCCCAGGTACATaGTTTCTTCGATGTTATAGCCACCGTAGAGAGCAG +
Preference number: 6 (lower is better)
Translates to: GPQHSTSLSPGT*FLRCYSHRREQ
Trigger: CTGCTCTCTACGGTGGCTATAACATCGAAGAAATCATGTACCTGGGCTCAGGCTTGTGCTGTGTTGGGGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp CAGAACTTCCTTCATCCCTTGGATCTGGGCCCCTGCTaGTCTGTAGAGGTCATCTGGGAACTTGGAAGCTTC +
Preference number: 6 (lower is better)
Translates to: QNFLHPLDLGPC*SVEVIWELGSF
Trigger: GAAGCTTCCAAGTTCCCAGATGACCTCTACAGAGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp GACCAACTGAGGCAAGTCGGAAATCTGGATCCGCTTTaGGATCGTCAGGCCTGGAATCAGAGCTGTGCTGAT +
Preference number: 6 (lower is better)
Translates to: DQLRQVGNLDPL*DRQAWNQSCAD
Trigger: ATCAGCACAGCTCTGATTCCAGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGACTTGCCTCAGTTGGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069902.13
CDS GCA 72 bp AAATCTGGATCCGCTTTGCGATCGTCAGGCCGATGGTaGCACCCATTGCCATTGCTCCAGACATCTGAGCTA +
Preference number: 6 (lower is better)
Translates to: KSGSALRSSGRW*HPLPLLQTSEL
Trigger: TAGCTCAGATGTCTGGAGCAATGGCAATGGGTGGCACCATCGGCCTGACGATCGCAAAGCGGATCCAGATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CCA 72 bp GTCGGAAATCTGGATCCGCTTTGCGATCGTCAGGCCTaGAATCAGAGCTGTGCTGATAAGGATGTCCACCTC +
Preference number: 6 (lower is better)
Translates to: VGNLDPLCDRQA*NQSCADKDVHL
Trigger: GAGGTGGACATCCTTATCAGCACAGCTCTGATTCCAGGCCTGACGATCGCAAAGCGGATCCAGATTTCCGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069902.13
CDS CAA 72 bp TCCCGAACTTTGGCCTGCAGAGCGTCACATGTCTTCTaGGCGTCCCCCAGAAGCATAGCTGTGTTAGGTTTG +
Preference number: 6 (lower is better)
Translates to: SRTLACRASHVF*ASPRSIAVLGL
Trigger: CAAACCTAACACAGCTATGCTTCTGGGGGACGCCAAGAAGACATGTGACGCTCTGCAGGCCAAAGTTCGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS CAA 90 bp CCTCACTTTGACCACCAGATCAGAAGCCAGAACTTCCTTCATCCCTaGGATCTGGGCCCCTGCTGCTCTGTAGAGGTCATCTGGGAACTT +
Preference number: 6 (lower is better)
Translates to: PHFDHQIRSQNFLHP*DLGPCCSVEVIWEL
Trigger: AAGTTCCCAGATGACCTCTACAGAGCAGCAGGGGCCCAGATCCAAGGGATGAAGGAAGTTCTGGCTTCTGATCTGGTGGTCAAAGTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp CCTGGCTTTACCGGGGATTTACACCACAGTGCCTGGTaGGTACGAAGCGTTCGTACAAAGTCTCTCTTCCCA +
Preference number: 6 (lower is better)
Translates to: PGFTGDLHHSAW*VRSVRTKSLFP
Trigger: TGGGAAGAGAGACTTTGTACGAACGCTTCGTACTCACCAGGCACTGTGGTGTAAATCCCCGGTAAAGCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp ATTAGAGTTCCTGATGGCTTTAAAAAGTCAGCTTCGTaGGCGCCTAACGTCGGGTTCACCATGGGGGCCCTC +
Preference number: 6 (lower is better)
Translates to: IRVPDGFKKSAS*APNVGFTMGAL
Trigger: GAGGGCCCCCATGGTGAACCCGACGTTAGGCGCTCACGAAGCTGACTTTTTAAAGCCATCAGGAACTCTAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS CAA 72 bp TCTCTCTTCCCAGGTAGAACCTTAGAGGACCCCAAGTaGCTAAGGAAAGGACATGAACAGCCAGCCACCACC +
Preference number: 6 (lower is better)
Translates to: SLFPGRTLEDPK*LRKGHEQPATT
Trigger: GGTGGTGGCTGGCTGTTCATGTCCTTTCCTTAGCAACTTGGGGTCCTCTAAGGTTCTACCTGGGAAGAGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp TCAGTAAGCATCTTCACCAAATCGGCAATGGGGTACTaGGCTTTAGCAGCACAGAGCCCATACCCTGGAGTA +
Preference number: 6 (lower is better)
Translates to: SVSIFTKSAMGY*ALAAQSPYPGV
Trigger: TACTCCAGGGTATGGGCTCTGTGCTGCTAAAGCTCAGTACCCCATTGCCGATTTGGTGAAGATGCTTACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp TGGAATTCCTGGCTTTACCGGGGATTTACACCACAGTaGCTGGTGAGTACGAAGCGTTCGTACAAAGTCTCT +
Preference number: 6 (lower is better)
Translates to: WNSWLYRGFTPQ*LVSTKRSYKVS
Trigger: AGAGACTTTGTACGAACGCTTCGTACTCACCAGGCACTGTGGTGTAAATCCCCGGTAAAGCCAGGAATTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp ACCGGCATGCCTGCAATTATAGAATTGGGGTCTTCTTaGGCCGCTGAATTCACAGTGTCGTTTGCTCCAATG +
Preference number: 6 (lower is better)
Translates to: TGMPAIIELGSS*AAEFTVSFAPM
Trigger: CATTGGAGCAAACGACACTGTGAATTCAGCGGCTCAAGAAGACCCCAATTCTATAATTGCAGGCATGCCGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS CCA 72 bp ACTGAGAGCATCATAGCCCTGAGCTATTGTCACTCTTaGAACCTGGTCCATCGCCAGAACTGTGGTTTTTCT +
Preference number: 6 (lower is better)
Translates to: TESIIALSYCHS*NLVHRQNCGFS
Trigger: AGAAAAACCACAGTTCTGGCGATGGACCAGGTTCCAAGAGTGACAATAGCTCAGGGCTATGATGCTCTCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp CTTGAGCCGCTGAATTCACAGTGTCGTTTGCTCCAATaGCAAGAACCAAGTCGGTGTCTGGAAAATCACTGT +
Preference number: 6 (lower is better)
Translates to: LEPLNSQCRLLQ*QEPSRCLENHC
Trigger: ACAGTGATTTTCCAGACACCGACTTGGTTCTTGTCATTGGAGCAAACGACACTGTGAATTCAGCGGCTCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS TCA 72 bp ACAGATAATTATACTCTGGAGGGTCCGTGGGTCGCTTaGACATGTCCAGCATTCTCTGAGTCACCAGAAAAC +
Preference number: 6 (lower is better)
Translates to: TDNYTLEGPWVA*TCPAFSESPEN
Trigger: GTTTTCTGGTGACTCAGAGAATGCTGGACATGTTCAAGCGACCCACGGACCCTCCAGAGTATAATTATCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp TCAAGTCAACCTCCAAGGGTTCAGCACCAAGGGATTTaGACTGTTCCAAAGCAGCAGCTCTTGTATCAAATC +
Preference number: 6 (lower is better)
Translates to: SSQPPRVQHQGI*TVPKQQLLYQI
Trigger: GATTTGATACAAGAGCTGCTGCTTTGGAACAGTTCAAATCCCTTGGTGCTGAACCCTTGGAGGTTGACTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp CGCCGATGTAAGTGCCAAGGTAAGCCACAATCTTGGTaGAATTTGACGTGGCATCCATTGCAAAATGTGGAT +
Preference number: 6 (lower is better)
Translates to: RRCKCQGKPQSW*NLTWHPLQNVD
Trigger: ATCCACATTTTGCAATGGATGCCACGTCAAATTTCACCAAGATTGTGGCTTACCTTGGCACTTACATCGGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp GCCTGCAATTATAGAATTGGGGTCTTCTTGAGCCGCTaGATTCACAGTGTCGTTTGCTCCAATGACAAGAAC +
Preference number: 6 (lower is better)
Translates to: ACNYRIGVFLSR*IHSVVCSNDKN
Trigger: GTTCTTGTCATTGGAGCAAACGACACTGTGAATTCAGCGGCTCAAGAAGACCCCAATTCTATAATTGCAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000223268.2
CDS CAA 90 bp TGGAATCAGAGCTGTGCTGATAAGGATGTCCACCTCCTTGCACTGTaGAGCAAAGAGCTTCATTTCAGCTTCAATGAACTCTTTGGACAT +
Preference number: 6 (lower is better)
Translates to: WNQSCADKDVHLLAL*SKELHFSFNELFGH
Trigger: ATGTCCAAAGAGTTCATTGAAGCTGAAATGAAGCTCTTTGCTCAACAGTGCAAGGAGGTGGACATCCTTATCAGCACAGCTCTGATTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS GCA 72 bp AATAACAATGCTGTTAGCTTCCCGGATCATCTCAACTaGGTTGTCCAGGTTGATTTCTGTATGTGTGCCAGA +
Preference number: 6 (lower is better)
Translates to: NNNAVSFPDHLN*VVQVDFCMCAR
Trigger: TCTGGCACACATACAGAAATCAACCTGGACAACGCAGTTGAGATGATCCGGGAAGCTAACAGCATTGTTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2
CDS TCA 72 bp GTAAGTGCCAAGGTAAGCCACAATCTTGGTGAAATTTaGCGTGGCATCCATTGCAAAATGTGGATACTCTAC +
Preference number: 6 (lower is better)
Translates to: VSAKVSHNLGEI*RGIHCKMWILY
Trigger: GTAGAGTATCCACATTTTGCAATGGATGCCACGTCAAATTTCACCAAGATTGTGGCTTACCTTGGCACTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000069902.13
ENSMUST00000099149.10
ENSMUST00000109204.8
ENSMUST00000223268.2