Pregenerated sensors for NNMT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032271Ensembl transcript IDs: ENSMUST00000034808.12, ENSMUST00000119426.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 72 bp | AAGAGTAATTTTGAGAAATCACCTCAAACTGCTCAATaGTGTAACCGGCCTCTTCCACAGCATCTCGAACAG | + |
Preference number: 3 (lower is better) Translates to: KSNFEKSPQTAQ*CNRPLPQHLEQ Trigger: CTGTTCGAGATGCTGTGGAAGAGGCCGGTTACACCATTGAGCAGTTTGAGGTGATTTCTCAAAATTACTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR CCA 90 bp | CTGCTCAATGGTGTAACCGGCCTCTTCCACAGCATCTCGAACAGTCTCCCATCCCACCAGGAAGCCTCCTaGCTTGAGCAGACTGCCCAG | + |
Preference number: 4 (lower is better) Translates to: LLNGVTGLFHSISNSLPSHQEAS*LEQTAQ Trigger: CTGGGCAGTCTGCTCAAGCCAGGAGGCTTCCTGGTG...GGATGGGAGACTGTTCGAGATGCTGTGGAAGAGGCCGGTTACACCATTGAGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR CCA 90 bp | CCACAGCATCTCGAACAGTCTCCCATCCCAGGGGAAGGCTGGAAAACTTCTGCTCACATAGGTGACCACTaGGGACCAGTCAAAGGCTCC | + |
Preference number: 4 (lower is better) Translates to: PQHLEQSPIPGEGWKTSAHIGDH*GPVKGS Trigger: GGAGCCTTTGACTGGTCCCCAGTGGTCACCTATGTG...AGCAGAAGTTTTCCAGCCTTCCCCTGGGATGGGAGACTGTTCGAGATGCTGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR CCA 90 bp | CTGCTCAATGGTGTAACCGGCCTCTTCCACAGCATCTCGAACAGTCTCCCATCCAGAGAAGCTGATAGATaGTGGGGCCAGAGCCAATGT | + |
Preference number: 4 (lower is better) Translates to: LLNGVTGLFHSISNSLPSREADR*WGQSQC Trigger: ACATTGGCTCTGGCCCCACCATCTATCAGCTTCTCT...GGATGGGAGACTGTTCGAGATGCTGTGGAAGAGGCCGGTTACACCATTGAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR GCA 90 bp | TCTTCCACAGCATCTCGAACAGTCTCCCATCCCAGGGGAAGGCTGGAAAACTTCTTCTTCAGCCATTTCTaGAGCTCCCAGAGGTTCTGG | + |
Preference number: 4 (lower is better) Translates to: SSTASRTVSHPRGRLENFFFSHF*SSQRFW Trigger: CCAGAACCTCTGGGAGCTGCAGAAATGGCTGAAGAA...GAAGTTTTCCAGCCTTCCCCTGGGATGGGAGACTGTTCGAGATGCTGTGGAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR GCA 90 bp | TCTTCCACAGCATCTCGAACAGTCTCCCATCCCAGGGGAAGGCTGGAAAACTTCAGGTTCCTGCTTGATTaGACGCCTCAACTTCTCCTC | + |
Preference number: 4 (lower is better) Translates to: SSTASRTVSHPRGRLENFRFLLD*TPQLLL Trigger: GAGGAGAAGTTGAGGCGTGCAATCAAGCAGGAACCT...GAAGTTTTCCAGCCTTCCCCTGGGATGGGAGACTGTTCGAGATGCTGTGGAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR TCA 90 bp | GAGAAATCACCTCAAACTGCTCAATGGTGTAACCGGCCTCTTCCACAGCATCTCGATCACACACATAGGTaGCCACTGGGGACCAGTCAA | + |
Preference number: 4 (lower is better) Translates to: EKSPQTAQWCNRPLPQHLDHTHR*PLGTSQ Trigger: TTGACTGGTCCCCAGTGGTCACCTATGTGTGTGATC...GAGATGCTGTGGAAGAGGCCGGTTACACCATTGAGCAGTTTGAGGTGATTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR GCA 90 bp | CCACAGCATCTCGAACAGTCTCCCATCCCAGGGGAAGGCTGGAAAACTTCTGCTGTCCCTTCATTCTGTTaGCTTCAAGATCACACACAT | + |
Preference number: 4 (lower is better) Translates to: PQHLEQSPIPGEGWKTSAVPSFC*LQDHTH Trigger: ATGTGTGTGATCTTGAAGGCAACAGAATGAAGGGAC...AGCAGAAGTTTTCCAGCCTTCCCCTGGGATGGGAGACTGTTCGAGATGCTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR TCA 90 bp | AAGAGTAATTTTGAGAAATCACCTCAAACTGCTCAATGGTGTAACCGGCCTCTTTTTTCAGCAGATGTCTaGGGATCTCGTTTTCTGCAC | + |
Preference number: 4 (lower is better) Translates to: KSNFEKSPQTAQWCNRPLFSADV*GSRFLH Trigger: GTGCAGAAAACGAGATCCTCAGACATCTGCTGAAAA...AAGAGGCCGGTTACACCATTGAGCAGTTTGAGGTGATTTCTCAAAATTACTCTT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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3UTR CAA 72 bp | GAGTCCTTCATTATTGGATGTGGTAGAAGAGTAATTTaGAGAAATCACCTCAAACTGCTCAATGGTGTAACC | + |
Preference number: 4 (lower is better) Translates to: ESFIIGCGRRVI*RNHLKLLNGVT Trigger: GGTTACACCATTGAGCAGTTTGAGGTGATTTCTCAAAATTACTCTTCTACCACATCCAATAATGAAGGACTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS CCA 90 bp | GTAGTAGCTACTCTTCAGGGCATCTACCATCACCAGGAAGCCTCCTaGCTTGAGCAGACTGCCCAGGTTCCTGAGGGCAGTGCGATAGGC | + |
Preference number: 5 (lower is better) Translates to: VVATLQGIYHHQEAS*LEQTAQVPEGSAIG Trigger: GCCTATCGCACTGCCCTCAGGAACCTGGGCAGTCTGCTCAAGCCAGGAGGCTTCCTGGTGATGGTAGATGCCCTGAAGAGTAGCTACTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034808.12 |
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CDS-3UTR CAA 90 bp | ATTCAGATCTGCCTGGCTTTCGCCCCACTAGGGAGAAGAGTCCTTCATTATTGGGGTCCCTTCATTCTGTaGCCTTCAAGATCACACACA | + |
Preference number: 5 (lower is better) Translates to: IQICLAFAPLGRRVLHYWGPFIL*PSRSHT Trigger: TGTGTGTGATCTTGAAGGCAACAGAATGAAGGGACC...CCAATAATGAAGGACTCTTCTCCCTAGTGGGGCGAAAGCCAGGCAGATCTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS-3UTR CAA 90 bp | GGAGAAGAGTCCTTCATTATTGGATGTGGTAGAAGAGTAATTTTGAGAAATCACAGGAAGCCTCCTGGCTaGAGCAGACTGCCCAGGTTC | + |
Preference number: 5 (lower is better) Translates to: GEESFIIGCGRRVILRNHRKPPG*SRLPRF Trigger: GAACCTGGGCAGTCTGCTCAAGCCAGGAGGCTTCCT...GTGATTTCTCAAAATTACTCTTCTACCACATCCAATAATGAAGGACTCTTCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS TCA 72 bp | GCCTCCTGGCTTGAGCAGACTGCCCAGGTTCCTGCTTaGTTGCACGCCTCAACTTCTCCTCCTTCTCAGGTC | + |
Preference number: 6 (lower is better) Translates to: ASWLEQTAQVPA*LHASTSPPSQV Trigger: GACCTGAGAAGGAGGAGAAGTTGAGGCGTGCAATCAAGCAGGAACCTGGGCAGTCTGCTCAAGCCAGGAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119426.2 |
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CDS GCA 72 bp | AGAGGCTGGCTCTGGGTCACATCACACTTTAGTACCTaGTTGATTGCACGCCTCAACTTCTCCTCCTTCTCA | + |
Preference number: 6 (lower is better) Translates to: RGWLWVTSHFST*LIARLNFSSFS Trigger: TGAGAAGGAGGAGAAGTTGAGGCGTGCAATCAAGCAGGTACTAAAGTGTGATGTGACCCAGAGCCAGCCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034808.12 |