Pregenerated sensors for NMU (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029236Ensembl transcript IDs: ENSMUST00000031146.3
Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGTAAGGAGGGATCATTTGTaGGAACAAAATTTGAGTACA | + |
|
Preference number: 2 (lower is better) Translates to: YNLNHRRECYNTGVCKRVRRDHL*EQNLST Trigger: TGTACTCAAATTTTGTTCTCACAAATGATCCCTCCT...TACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| 3UTR GCA 72 bp | CTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTaGAAGAGAGTAAATTTAGGAGGGATCATTTGTGAG | + |
|
Preference number: 3 (lower is better) Translates to: LNHRRECYNTGV*KRVNLGGIICE Trigger: CTCACAAATGATCCCTCCTAAATTTACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR GCA 90 bp | TATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGTAGCAAAGCTCCCTCAGTaGAACAGATGCCTGAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: YNLNHRRECYNTGVCKRVAKLPQ*NRCLRP Trigger: AGGCCTCAGGCATCTGTTGCACTGAGGGAGCTTTGC...TACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR TCA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGACTTCTCTCATGCAGTTaGGGGACGAGCTGCAGCAAC | + |
|
Preference number: 4 (lower is better) Translates to: IYNLNHRRECYNTGVCKRLLSCS*GTSCSN Trigger: GTTGCTGCAGCTCGTCCCTCAACTGCATGAGAGAAG...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR GCA 90 bp | TATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGTACCTCAGTGCAACAGATaGCTGAGGCCTGGAATCAAT | + |
|
Preference number: 4 (lower is better) Translates to: YNLNHRRECYNTGVCKRVPQCNR*LRPGIN Trigger: ATTGATTCCAGGCCTCAGGCATCTGTTGCACTGAGG...TACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR GCA 90 bp | TATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGTAAGCTGCAGCAACGGATaGACAACAGAGGACACAACA | + |
|
Preference number: 4 (lower is better) Translates to: YNLNHRRECYNTGVCKRVSCSNG*TTEDTT Trigger: TGTTGTGTCCTCTGTTGTGCATCCGTTGCTGCAGCT...TACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR CCA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGAGGCCTGGAATCAATaGACAGAAAGGACGCACAAG | + |
|
Preference number: 4 (lower is better) Translates to: IYNLNHRRECYNTGVCKREAWNQ*TERTHK Trigger: CTTGTGCGTCCTTTCTGTCCATTGATTCCAGGCCTC...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR CCA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGACAGATGCCTGAGGCCTaGAATCAATGGACAGAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: IYNLNHRRECYNTGVCKRQMPEA*NQWTER Trigger: CCTTTCTGTCCATTGATTCCAGGCCTCAGGCATCTG...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR TCA 90 bp | TATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGTAGACGCACAAGCTTCATaGATCTCATTCCACAATTGT | + |
|
Preference number: 4 (lower is better) Translates to: YNLNHRRECYNTGVCKRVDAQAS*ISFHNC Trigger: ACAATTGTGGAATGAGATTCATGAAGCTTGTGCGTC...TACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR TCA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGATTAAATGAAACTTGTTaGCCTCTTCCCGTTGCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: IYNLNHRRECYNTGVCKRLNETC*PLPVAW Trigger: CCACGCAACGGGAAGAGGTCAACAAGTTTCATTTAA...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR GCA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAAGGACTCTGGTATTCTaGTTTGAATCTCTTCATTCT | + |
|
Preference number: 4 (lower is better) Translates to: IYNLNHRRECYNTGVCKRRTLVF*FESLHS Trigger: AGAATGAAGAGATTCAAAGCAGAATACCAGAGTCCT...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS GCA 90 bp | GTTCTTGTTCTGGCTGCAATCTTTGAGGTGATATTGGCACACCTTTaGAAGCGTCTGCACAGCAGGCGAGCAGCAGCAGCAGTGACAGGA | + |
|
Preference number: 5 (lower is better) Translates to: VLVLAAIFEVILAHL*KRLHSRRAAAAVTG Trigger: TCCTGTCACTGCTGCTGCTGCTCGCCTGCTGTGCAGACGCTTGCAAAGGTGTGCCAATATCACCTCAAAGATTGCAGCCAGAACAAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS GCA 90 bp | AGGCTTCTGGGAAATCTCCATCACTATACGGCAAAGCTCCCTCAGTaGAACAGATGCCTGAGGCCTGGAATCAATGGACAGAAAGGACGC | + |
|
Preference number: 5 (lower is better) Translates to: RLLGNLHHYTAKLPQ*NRCLRPGINGQKGR Trigger: GCGTCCTTTCTGTCCATTGATTCCAGGCCTCAGGCATCTGTTGCACTGAGGGAGCTTTGCCGTATAGTGATGGAGATTTCCCAGAAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS CCA 90 bp | GGCAAAGCTCCCTCAGTGCAACAGATGCCTGAGGCCTGGAATCAATaGACAGAAAGGACGCACAAGCTTCATGAATCTCATTCCACAATT | + |
|
Preference number: 5 (lower is better) Translates to: GKAPSVQQMPEAWNQ*TERTHKLHESHSTI Trigger: AATTGTGGAATGAGATTCATGAAGCTTGTGCGTCCTTTCTGTCCATTGATTCCAGGCCTCAGGCATCTGTTGCACTGAGGGAGCTTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR CAA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGGTTGCAGCAGCCAATaGTCCTGCGGACAGCCCTGG | + |
|
Preference number: 5 (lower is better) Translates to: IYNLNHRRECYNTGVCKRGCSSQ*SCGQPW Trigger: CCAGGGCTGTCCGCAGGACAATTGGCTGCTGCAACC...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS TCA 90 bp | GACCTCTTCCCGTTGCGTGGCCTGAATAAAAAGTATCCCTTACTTTaGCCCACGGAAGGACTCTGGTATTCTGCTTTGAATCTCTTCATT | + |
|
Preference number: 5 (lower is better) Translates to: DLFPLRGLNKKYPLL*PTEGLWYSALNLFI Trigger: AATGAAGAGATTCAAAGCAGAATACCAGAGTCCTTCCGTGGGTCAAAGTAAGGGATACTTTTTATTCAGGCCACGCAACGGGAAGAGGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR CAA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGATCTTCTCTCATGCAGTaGAGGGACGAGCTGCAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: IYNLNHRRECYNTGVCKRSSLMQ*RDELQQ Trigger: TTGCTGCAGCTCGTCCCTCAACTGCATGAGAGAAGA...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR CAA 90 bp | TATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGTACAGAGGACACAACATTaGAATTTCCCAACTTCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: YNLNHRRECYNTGVCKRVQRTQH*NFPTSV Trigger: CACAGAAGTTGGGAAATTCAAATGTTGTGTCCTCTG...TACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR CAA 90 bp | TATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGAGTACTCTGGTATTCTGCTTaGAATCTCTTCATTCTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: YNLNHRRECYNTGVCKRVLWYSA*NLFILL Trigger: GAGAAGAATGAAGAGATTCAAAGCAGAATACCAGAG...TACTCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS-3UTR CAA 90 bp | ATTTATAATCTCAACCATCGCAGAGAATGTTACAATACAGGGGTTTGCAAGAGACCAACTTCTGTGTCTTaGAATAGTGAAATAAGAACC | + |
|
Preference number: 5 (lower is better) Translates to: IYNLNHRRECYNTGVCKRPTSVS*NSEIRT Trigger: GGTTCTTATTTCACTATTCAAAGACACAGAAGTTGG...TCTCTTGCAAACCCCTGTATTGTAACATTCTCTGCGATGGTTGAGATTATAAAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS TCA 72 bp | ACTATACGGCAAAGCTCCCTCAGTGCAACAGATGCCTaGGGCCTGGAATCAATGGACAGAAAGGACGCACAA | + |
|
Preference number: 6 (lower is better) Translates to: TIRQSSLSATDA*GLESMDRKDAQ Trigger: TTGTGCGTCCTTTCTGTCCATTGATTCCAGGCCTCAGGCATCTGTTGCACTGAGGGAGCTTTGCCGTATAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS GCA 72 bp | GGAAATCTCCATCACTATACGGCAAAGCTCCCTCAGTaGAACAGATGCCTGAGGCCTGGAATCAATGGACAG | + |
|
Preference number: 6 (lower is better) Translates to: GNLHHYTAKLPQ*NRCLRPGINGQ Trigger: CTGTCCATTGATTCCAGGCCTCAGGCATCTGTTGCACTGAGGGAGCTTTGCCGTATAGTGATGGAGATTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS CCA 72 bp | CCCTCAGTGCAACAGATGCCTGAGGCCTGGAATCAATaGACAGAAAGGACGCACAAGCTTCATGAATCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: PSVQQMPEAWNQ*TERTHKLHESH Trigger: ATGAGATTCATGAAGCTTGTGCGTCCTTTCTGTCCATTGATTCCAGGCCTCAGGCATCTGTTGCACTGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS CAA 72 bp | GTAGTTCTTGTTCTGGCTGCAATCTTTGAGGTGATATaGGCACACCTTTGCAAGCGTCTGCACAGCAGGCGA | + |
|
Preference number: 6 (lower is better) Translates to: VVLVLAAIFEVI*AHLCKRLHSRR Trigger: TCGCCTGCTGTGCAGACGCTTGCAAAGGTGTGCCAATATCACCTCAAAGATTGCAGCCAGAACAAGAACTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS TCA 72 bp | CCGTTGCGTGGCCTGAATAAAAAGTATCCCTTACTTTaGCCCACGGAAGGACTCTGGTATTCTGCTTTGAAT | + |
|
Preference number: 6 (lower is better) Translates to: PLRGLNKKYPLL*PTEGLWYSALN Trigger: ATTCAAAGCAGAATACCAGAGTCCTTCCGTGGGTCAAAGTAAGGGATACTTTTTATTCAGGCCACGCAACGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||
| CDS TCA 72 bp | TTCCACAATTGTAGTTCTTGTTCTGGCTGCAATCTTTaGGGTGATATTGGCACACCTTTGCAAGCGTCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: FHNCSSCSGCNL*GDIGTPLQASA Trigger: TGCAGACGCTTGCAAAGGTGTGCCAATATCACCTCAAAGATTGCAGCCAGAACAAGAACTACAATTGTGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031146.3 |
||