RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NMS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067604

Ensembl transcript IDs: ENSMUST00000088029.8, ENSMUST00000160214.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp AGTAAATTCTTAGAAATATATTCATGGGATGTACCTATTCCCACAGTCTTCCAGGCATTTTGGAGAGCATaGGACAACAGAAATATGGCT +
Preference number: 2 (lower is better)
Translates to: SKFLEIYSWDVPIPTVFQAFWRA*DNRNMA
Trigger: AGCCATATTTCTGTTGTCCCATGCTCTCCAAAATGC...CTGGAAGACTGTGGGAATAGGTACATCCCATGAATATATTTCTAAGAATTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
3UTR CAA 90 bp GCTTATCCCCTATCTATGTGTTCAGCCATCAACAAGTTAGTTCGATaGTTCCATGCCCAAATCAGTAAATTCTTAGAAATATATTCATGG +
Preference number: 2 (lower is better)
Translates to: AYPLSMCSAINKLVR*FHAQISKFLEIYSW
Trigger: CCATGAATATATTTCTAAGAATTTACTGATTTGGGCATGGAACAATCGAACTAACTTGTTGATGGCTGAACACATAGATAGGGGATAAGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR CCA 90 bp TCTTGGCATTTCCTCCAAAGGCGCACACCGTCTGGTGACATGGGACTCTTGCTGCTTTTGTATACATCCTaGTTTTCCTTAGGTTGGTTA +
Preference number: 4 (lower is better)
Translates to: SWHFLQRRTPSGDMGLLLLLYTS*FSLGWL
Trigger: TAACCAACCTAAGGAAAACCAGGATGTATACAAAAG...CAGCAAGAGTCCCATGTCACCAGACGGTGTGCGCCTTTGGAGGAAATGCCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR GCA 90 bp AGAAAGCAAACAGAGTTAGCATCTGATATCAGGGTTTTAGCTTATCCCCTATCTGTCTTTTCATCCTTCTaGTGGCGAGCTTGGCAGCCA +
Preference number: 4 (lower is better)
Translates to: RKQTELASDIRVLAYPLSVFSSF*WRAWQP
Trigger: TGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGAC...AGATAGGGGATAAGCTAAAACCCTGATATCAGATGCTAACTCTGTTTGCTTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR CCA 90 bp TCAACTAGAAAGCAAACAGAGTTAGCATCTGATATCAGGGTTTTAGCTTATCCCGTAGATGAACAGGATTaGAGAATAGTGGGGGAGCGG +
Preference number: 4 (lower is better)
Translates to: STRKQTELASDIRVLAYPVDEQD*RIVGER
Trigger: CCGCTCCCCCACTATTCTCCAATCCTGTTCATCTAC...GGGATAAGCTAAAACCCTGATATCAGATGCTAACTCTGTTTGCTTTCTAGTTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR CCA 90 bp AGTAAATTCTTAGAAATATATTCATGGGATGTACCTATTCCCACAGTCTTCCAGTTTTCATCCTTCTGCTaGCGAGCTTGGCAGCCAGGC +
Preference number: 4 (lower is better)
Translates to: SKFLEIYSWDVPIPTVFQFSSFC*RAWQPG
Trigger: GCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAA...CTGGAAGACTGTGGGAATAGGTACATCCCATGAATATATTTCTAAGAATTTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR CCA 90 bp TCAACTAGAAAGCAAACAGAGTTAGCATCTGATATCAGGGTTTTAGCTTATCCCTCGGTTTCCGAGTTCTaGAGTAGTGAAATAAAAACC +
Preference number: 4 (lower is better)
Translates to: STRKQTELASDIRVLAYPSVSEF*SSEIKT
Trigger: GGTTTTTATTTCACTACTCCAGAACTCGGAAACCGA...GGGATAAGCTAAAACCCTGATATCAGATGCTAACTCTGTTTGCTTTCTAGTTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR TCA 90 bp TTTTGTACAACTAAGCATTTTGGAGAGCATGGGACAACAGAAATATGGCTAAATTACAGAAGCAGTAGATaGACAGGATTGGAGAATAGT +
Preference number: 4 (lower is better)
Translates to: FCTTKHFGEHGTTEIWLNYRSSR*TGLENS
Trigger: ACTATTCTCCAATCCTGTTCATCTACTGCTTCTGTA...ATTTAGCCATATTTCTGTTGTCCCATGCTCTCCAAAATGCTTAGTTGTACAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR GCA 90 bp TTTTGTACAACTAAGCATTTTGGAGAGCATGGGACAACAGAAATATGGCTAAATGAATGTATTTCCCTCTaGTTCAGAAAGTATGCCAGT +
Preference number: 4 (lower is better)
Translates to: FCTTKHFGEHGTTEIWLNECISL*FRKYAS
Trigger: ACTGGCATACTTTCTGAAGCAGAGGGAAATACATTC...ATTTAGCCATATTTCTGTTGTCCCATGCTCTCCAAAATGCTTAGTTGTACAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR CCA 90 bp AGTAAATTCTTAGAAATATATTCATGGGATGTACCTATTCCCACAGTCTTCCAGTGGTTTTCCTTAGGTTaGTTAGAATGTATTTCCCTC +
Preference number: 4 (lower is better)
Translates to: SKFLEIYSWDVPIPTVFQWFSLG*LECISL
Trigger: GAGGGAAATACATTCTAACCAACCTAAGGAAAACCA...CTGGAAGACTGTGGGAATAGGTACATCCCATGAATATATTTCTAAGAATTTACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
3UTR CAA 72 bp CTATCTATGTGTTCAGCCATCAACAAGTTAGTTCGATaGTTCCATGCCCAAATCAGTAAATTCTTAGAAATA +
Preference number: 4 (lower is better)
Translates to: LSMCSAINKLVR*FHAQISKFLEI
Trigger: TATTTCTAAGAATTTACTGATTTGGGCATGGAACAATCGAACTAACTTGTTGATGGCTGAACACATAGATAG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS GCA 90 bp TCCTGGAATCGAGGCGCAGCAATCGCGGCAGTCTTTTCATCCTTCTaGTGGCGAGCTTGGCAGCCAGGCGCATCAATGGATGGACCGGAG +
Preference number: 5 (lower is better)
Translates to: SWNRGAAIAAVFSSF*WRAWQPGASMDGPE
Trigger: CTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGACTGCCGCGATTGCTGCGCCTCGATTCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 90 bp TGGAATCGAGGCGCAGCAATCGCGGCAGTCTTTTCATCCTTCTGCTaGCGAGCTTGGCAGCCAGGCGCATCAATGGATGGACCGGAGCAA +
Preference number: 5 (lower is better)
Translates to: WNRGAAIAAVFSSFC*RAWQPGASMDGPEQ
Trigger: TTGCTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGACTGCCGCGATTGCTGCGCCTCGATTCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 90 bp TTCATCCTTCTGCTGGCGAGCTTGGCAGCCAGGCGCATCAATGGATaGACCGGAGCAAACTCAGCGCTAACTGGATGTGTCGGTTTCCGA +
Preference number: 5 (lower is better)
Translates to: FILLLASLAARRING*TGANSALTGCVGFR
Trigger: TCGGAAACCGACACATCCAGTTAGCGCTGAGTTTGCTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 90 bp TCTTTTCATCCTTCTGCTGGCGAGCTTGGCAGCCAGGCGCATCAATaGATGGACCGGAGCAAACTCAGCGCTAACTGGATGTGTCGGTTT +
Preference number: 5 (lower is better)
Translates to: SFHPSAGELGSQAHQ*MDRSKLSANWMCRF
Trigger: AAACCGACACATCCAGTTAGCGCTGAGTTTGCTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS GCA 90 bp TATACATCCTGGTTTTCCTTAGGTTGGTTAGAATGTATTTCCCTCTaGTTCAGAAAGTATGCCAGTCGCTCAGGATCCACAATATCCAAG +
Preference number: 5 (lower is better)
Translates to: YTSWFSLGWLECISL*FRKYASRSGSTISK
Trigger: CTTGGATATTGTGGATCCTGAGCGACTGGCATACTTTCTGAAGCAGAGGGAAATACATTCTAACCAACCTAAGGAAAACCAGGATGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS-3UTR CAA 90 bp AGTAAATTCTTAGAAATATATTCATGGGATGTACCTATTCCCACAGTCTTCCAGCTGGTTTTCCTTAGGTaGGTTAGAATGTATTTCCCT +
Preference number: 5 (lower is better)
Translates to: SKFLEIYSWDVPIPTVFQLVFLR*VRMYFP
Trigger: AGGGAAATACATTCTAACCAACCTAAGGAAAACCAG...CTGGAAGACTGTGGGAATAGGTACATCCCATGAATATATTTCTAAGAATTTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8
CDS GCA 72 bp CGAGGCGCAGCAATCGCGGCAGTCTTTTCATCCTTCTaGTGGCGAGCTTGGCAGCCAGGCGCATCAATGGAT +
Preference number: 6 (lower is better)
Translates to: RGAAIAAVFSSF*WRAWQPGASMD
Trigger: ATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGACTGCCGCGATTGCTGCGCCTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 72 bp CTGCTGGCGAGCTTGGCAGCCAGGCGCATCAATGGATaGACCGGAGCAAACTCAGCGCTAACTGGATGTGTC +
Preference number: 6 (lower is better)
Translates to: LLASLAARRING*TGANSALTGCV
Trigger: GACACATCCAGTTAGCGCTGAGTTTGCTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 72 bp CCTTCTGCTGGCGAGCTTGGCAGCCAGGCGCATCAATaGATGGACCGGAGCAAACTCAGCGCTAACTGGATG +
Preference number: 6 (lower is better)
Translates to: PSAGELGSQAHQ*MDRSKLSANWM
Trigger: CATCCAGTTAGCGCTGAGTTTGCTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 72 bp GGCGCAGCAATCGCGGCAGTCTTTTCATCCTTCTGCTaGCGAGCTTGGCAGCCAGGCGCATCAATGGATGGA +
Preference number: 6 (lower is better)
Translates to: GAAIAAVFSSFC*RAWQPGASMDG
Trigger: TCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGACTGCCGCGATTGCTGCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 72 bp ATCGCGGCAGTCTTTTCATCCTTCTGCTGGCGAGCTTaGCAGCCAGGCGCATCAATGGATGGACCGGAGCAA +
Preference number: 6 (lower is better)
Translates to: IAAVFSSFCWRA*QPGASMDGPEQ
Trigger: TTGCTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGACTGCCGCGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CAA 72 bp AATCGCGGCAGTCTTTTCATCCTTCTGCTGGCGAGCTaGGCAGCCAGGCGCATCAATGGATGGACCGGAGCA +
Preference number: 6 (lower is better)
Translates to: NRGSLFILLLAS*AARRINGWTGA
Trigger: TGCTCCGGTCCATCCATTGATGCGCCTGGCTGCCAAGCTCGCCAGCAGAAGGATGAAAAGACTGCCGCGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS TCA 72 bp CTGAGGAGGGAATCTGTAGCATACAGAAGCAGTAGATaGACAGGATTGGAGAATAGTGGGGGAGCGGGTGTT +
Preference number: 6 (lower is better)
Translates to: LRRESVAYRSSR*TGLENSGGAGV
Trigger: AACACCCGCTCCCCCACTATTCTCCAATCCTGTTCATCTACTGCTTCTGTATGCTACAGATTCCCTCCTCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS CCA 72 bp CATCAATGGATGGACCGGAGCAAACTCAGCGCTAACTaGATGTGTCGGTTTCCGAGTTCTGGAGTAGTGAAA +
Preference number: 6 (lower is better)
Translates to: HQWMDRSKLSAN*MCRFPSSGVVK
Trigger: TTTCACTACTCCAGAACTCGGAAACCGACACATCCAGTTAGCGCTGAGTTTGCTCCGGTCCATCCATTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS GCA 72 bp TTGGTTAGAATGTATTTCCCTCTGCTTCAGAAAGTATaGCAGTCGCTCAGGATCCACAATATCCAAGCCGTC +
Preference number: 6 (lower is better)
Translates to: LVRMYFPLLQKV*QSLRIHNIQAV
Trigger: GACGGCTTGGATATTGTGGATCCTGAGCGACTGGCATACTTTCTGAAGCAGAGGGAAATACATTCTAACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088029.8
ENSMUST00000160214.2
CDS GCA 72 bp TGGTTTTCCTTAGGTTGGTTAGAATGTATTTCCCTCTaGTTCAGAAAGTATGCCAGTCGCTCAGGATCCACA +
Preference number: 6 (lower is better)
Translates to: WFSLGWLECISL*FRKYASRSGST
Trigger: TGTGGATCCTGAGCGACTGGCATACTTTCTGAAGCAGAGGGAAATACATTCTAACCAACCTAAGGAAAACCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088029.8