Pregenerated sensors for NMI (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026946Ensembl transcript IDs: ENSMUST00000028314.9, ENSMUST00000112705.9, ENSMUST00000142868.2, ENSMUST00000145481.8, ENSMUST00000145656.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CATATGGTTTCTCTGGCCTCTTCTTTAAAATACGCTGCGAAGGACTaGTCTAGAGAACACTTGACCACCTCCACTTCTCCCCCTCCGTTA | + |
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Preference number: 1 (lower is better) Translates to: HMVSLASSLKYAAKD*SREHLTTSTSPPPL Trigger: TAACGGAGGGGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAGCGTATTTTAAAGAAGAGGCCAGAGAAACCATATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| 3UTR CAA 90 bp | GCCTCTTCTTTAAAATACGCTGCGAAGGACTGGTCTAGAGAACACTaGACCACCTCCACTTCTCCCCCTCCGTTATTCTTCCGTTGGAAG | + |
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Preference number: 2 (lower is better) Translates to: ASSLKYAAKDWSREH*TTSTSPPPLFFRWK Trigger: CTTCCAACGGAAGAATAACGGAGGGGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAGCGTATTTTAAAGAAGAGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| 3UTR CCA 72 bp | TCTCTGGCCTCTTCTTTAAAATACGCTGCGAAGGACTaGTCTAGAGAACACTTGACCACCTCCACTTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: SLASSLKYAAKD*SREHLTTSTSP Trigger: GGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAGCGTATTTTAAAGAAGAGGCCAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS-3UTR CCA 90 bp | TTAAAATACGCTGCGAAGGACTGGTCTAGAGAACACTTGACCACCTCCACTTCTCGCCGCCGCCATTCCTaGACTTACAGAAGCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LKYAAKDWSREHLTTSTSRRRHS*TYRSSA Trigger: AGCTGAGCTTCTGTAAGTCCAGGAATGGCGGCGGCG...AGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAGCGTATTTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS-3UTR TCA 90 bp | GACTGGTCTAGAGAACACTTGACCACCTCCACTTCTCCCCCTCCGTTATTCTTCCTTTTTGGACACAGCTaGAAACACCGCCAGTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DWSREHLTTSTSPPPLFFLFGHS*KHRQFP Trigger: TGGAAACTGGCGGTGTTTTCAGCTGTGTCCAAAAAG...GAAGAATAACGGAGGGGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS-3UTR CCA 90 bp | AAATACGCTGCGAAGGACTGGTCTAGAGAACACTTGACCACCTCCACTTCTCCCGAAGCACTGTCTTTTTaGACACAGCTGAAAACACCG | + |
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Preference number: 4 (lower is better) Translates to: KYAAKDWSREHLTTSTSPEALSF*TQLKTP Trigger: CGGTGTTTTCAGCTGTGTCCAAAAAGACAGTGCTTC...GGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAGCGTATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS-3UTR CAA 90 bp | GCTGCGAAGGACTGGTCTAGAGAACACTTGACCACCTCCACTTCTCCCCCTCCGAGAAGCACTGTCTTTTaGGACACAGCTGAAAACACC | + |
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Preference number: 5 (lower is better) Translates to: AAKDWSREHLTTSTSPPPRSTVF*DTAENT Trigger: GGTGTTTTCAGCTGTGTCCAAAAAGACAGTGCTTCT...CGGAGGGGGAGAAGTGGAGGTGGTCAAGTGTTCTCTAGACCAGTCCTTCGCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS-3UTR CAA 90 bp | TTGACCACCTCCACTTCTCCCCCTCCGTTATTCTTCCGTTGGAAGTGGATGTTGAAGCTCAGCTCCAGTTaGTCCCTTGTCTGCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: LTTSTSPPPLFFRWKWMLKLSSS*SLVCSS Trigger: TGAGGAGCAGACAAGGGACAAACTGGAGCTGAGCTT...CAACATCCACTTCCAACGGAAGAATAACGGAGGGGGAGAAGTGGAGGTGGTCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS CCA 90 bp | GAACACTTGACCACCTCCACTTCTCCCCCTCCGTTATTCTTCCGTTaGAAGTGGATGTTGAGTAAGTCCTCCCCAGTCTCCTCATCTACA | + |
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Preference number: 5 (lower is better) Translates to: EHLTTSTSPPPLFFR*KWMLSKSSPVSSST Trigger: TGTAGATGAGGAGACTGGGGAGGACTTACTCAACATCCACTTCCAACGGAAGAATAACGGAGGGGGAGAAGTGGAGGTGGTCAAGTGTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS GCA 90 bp | GCCTTCCATCTGCACGACATGATTCCCCATCGATATCACATTTTGTaGGACTTCTTCCTTCTCAAAGGTGATGAGCGCTTGGCCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: AFHLHDMIPHRYHIL*DFFLLKGDERLAFL Trigger: CAGGAAGGCCAAGCGCTCATCACCTTTGAGAAGGAAGAAGTCGCACAAAATGTGATATCGATGGGGAATCATGTCGTGCAGATGGAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS GCA 90 bp | CCATTCCTGGACTTACAGAAGCTCAGCTCCAGTTTGTCCCTTGTCTaGTCCTCAGACAGCTCATCGGGAATTCCCGTAACATTGATCTTC | + |
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Preference number: 5 (lower is better) Translates to: PFLDLQKLSSSLSLV*SSDSSSGIPVTLIF Trigger: GAAGATCAATGTTACGGGAATTCCCGATGAGCTGTCTGAGGAGCAGACAAGGGACAAACTGGAGCTGAGCTTCTGTAAGTCCAGGAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS TCA 90 bp | AACCAATCCCATGCTCTGTTCGCCTCTCATATCGTCCATCTCTGCTaGGCGCTCATCACAAGCTTGCTTTATGTTGTCTTTATCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: NQSHALFASHIVHLC*ALITSLLYVVFISI Trigger: GATGCTGATAAAGACAACATAAAGCAAGCTTGTGATGAGCGCTCAGCAGAGATGGACGATATGAGAGGCGAACAGAGCATGGGATTGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 ENSMUST00000145656.2 |
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| CDS TCA 90 bp | TTTTTGATCTCCTCGTCTAGTTCTTTGTTTTCACTCATAATTTCATaGACCAATCCCATGCTCTGTTCGCCTCTCATATCGTCCATCTCT | + |
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Preference number: 5 (lower is better) Translates to: FLISSSSSLFSLIIS*TNPMLCSPLISSIS Trigger: AGAGATGGACGATATGAGAGGCGAACAGAGCATGGGATTGGTTCATGAAATTATGAGTGAAAACAAAGAACTAGACGAGGAGATCAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 ENSMUST00000145656.2 |
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| CDS CCA 72 bp | CATAATCCACGCTTTCCACTTCGCCGCCGCCATTCCTaGACTTACAGAAGCTCAGCTCCAGTTTGTCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: HNPRFPLRRRHS*TYRSSAPVCPL Trigger: CAAGGGACAAACTGGAGCTGAGCTTCTGTAAGTCCAGGAATGGCGGCGGCGAAGTGGAAAGCGTGGATTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000142868.2 ENSMUST00000145481.8 |
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| CDS TCA 72 bp | CTCCCCCTCCGTTATTCTTCCGTTGGAAGTGGATGTTaGGTAAGTCCTCCCCAGTCTCCTCATCTACAGGAA | + |
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Preference number: 6 (lower is better) Translates to: LPLRYSSVGSGC*VSPPQSPHLQE Trigger: TTCCTGTAGATGAGGAGACTGGGGAGGACTTACTCAACATCCACTTCCAACGGAAGAATAACGGAGGGGGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS GCA 72 bp | GACTTACAGAAGCTCAGCTCCAGTTTGTCCCTTGTCTaGTCCTCAGACAGCTCATCGGGAATTCCCGTAACA | + |
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Preference number: 6 (lower is better) Translates to: DLQKLSSSLSLV*SSDSSSGIPVT Trigger: TGTTACGGGAATTCCCGATGAGCTGTCTGAGGAGCAGACAAGGGACAAACTGGAGCTGAGCTTCTGTAAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS CAA 72 bp | TCTCCCCCTCCGTTATTCTTCCGTTGGAAGTGGATGTaGAGTAAGTCCTCCCCAGTCTCCTCATCTACAGGA | + |
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Preference number: 6 (lower is better) Translates to: SPPPLFFRWKWM*SKSSPVSSSTG Trigger: TCCTGTAGATGAGGAGACTGGGGAGGACTTACTCAACATCCACTTCCAACGGAAGAATAACGGAGGGGGAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS CAA 90 bp | GGTGCCTTCCATCTGCACGACATGATTCCCCATCGATATCACATTTaGTGCGACTTCTTCCTTCTCAAAGGTGATGAGCGCTTGGCCTTC | + |
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Preference number: 6 (lower is better) Translates to: GAFHLHDMIPHRYHI*CDFFLLKGDERLAF Trigger: GAAGGCCAAGCGCTCATCACCTTTGAGAAGGAAGAAGTCGCACAAAATGTGATATCGATGGGGAATCATGTCGTGCAGATGGAAGGCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS CAA 72 bp | CATCTGCACGACATGATTCCCCATCGATATCACATTTaGTGCGACTTCTTCCTTCTCAAAGGTGATGAGCGC | + |
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Preference number: 6 (lower is better) Translates to: HLHDMIPHRYHI*CDFFLLKGDER Trigger: GCGCTCATCACCTTTGAGAAGGAAGAAGTCGCACAAAATGTGATATCGATGGGGAATCATGTCGTGCAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 |
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| CDS CAA 72 bp | GGAATGCCTTCTAATCCGGTCAGAAGCACTGTCTTTTaGGACACAGCTGAAAACACCGCCAGTTTCCACAAA | + |
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Preference number: 6 (lower is better) Translates to: GMPSNPVRSTVF*DTAENTASFHK Trigger: TTTGTGGAAACTGGCGGTGTTTTCAGCTGTGTCCAAAAAGACAGTGCTTCTGACCGGATTAGAAGGCATTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS CCA 72 bp | GAATGCCTTCTAATCCGGTCAGAAGCACTGTCTTTTTaGACACAGCTGAAAACACCGCCAGTTTCCACAAAA | + |
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Preference number: 6 (lower is better) Translates to: ECLLIRSEALSF*TQLKTPPVSTK Trigger: TTTTGTGGAAACTGGCGGTGTTTTCAGCTGTGTCCAAAAAGACAGTGCTTCTGACCGGATTAGAAGGCATTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000142868.2 |
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| CDS TCA 72 bp | TCCTCGTCTAGTTCTTTGTTTTCACTCATAATTTCATaGACCAATCCCATGCTCTGTTCGCCTCTCATATCG | + |
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Preference number: 6 (lower is better) Translates to: SSSSSLFSLIIS*TNPMLCSPLIS Trigger: CGATATGAGAGGCGAACAGAGCATGGGATTGGTTCATGAAATTATGAGTGAAAACAAAGAACTAGACGAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 ENSMUST00000145656.2 |
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| CDS CAA 72 bp | TCTCTGGCATCCGACTGCAATTCAGCTTCAAGTTTTTaGATCTCCTCGTCTAGTTCTTTGTTTTCACTCATA | + |
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Preference number: 6 (lower is better) Translates to: SLASDCNSASSF*ISSSSSLFSLI Trigger: TATGAGTGAAAACAAAGAACTAGACGAGGAGATCAAAAAACTTGAAGCTGAATTGCAGTCGGATGCCAGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000028314.9 ENSMUST00000112705.9 ENSMUST00000145481.8 ENSMUST00000145656.2 |
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