RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NME6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032478

Ensembl transcript IDs: ENSMUST00000035053.12, ENSMUST00000197627.5, ENSMUST00000199758.5, ENSMUST00000200005.5, ENSMUST00000200345.5, ENSMUST00000200468.2

Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTaGAGTCAGGGAAGAAGGCTGCAATCTCTCTGCTGGCGGAAACCA +
Preference number: 1 (lower is better)
Translates to: HTAAGVPPPHTSAVH*SQGRRLQSLCWRKP
Trigger: TGGTTTCCGCCAGCAGAGAGATTGCAGCCTTCTTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
3UTR GCA 90 bp GCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAACACTaGGACCAGTCCTCGGGACTTTACTTGGCTGGGTCTCCTAGGTTT +
Preference number: 1 (lower is better)
Translates to: AFRPPSLTLGGRAEH*DQSSGLYLAGSPRF
Trigger: AAACCTAGGAGACCCAGCCAAGTAAAGTCCCGAGGACTGGTCGCAGTGTTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR CCA 90 bp TTGTTTGTGGCCTCCTGTTTCAGCTGCACAGTGGATACCTTCCTCTaGACTGTAGTGCACAGGACCACACCGCAGCTGGGGTTCCTCCTC +
Preference number: 1 (lower is better)
Translates to: LFVASCFSCTVDTFL*TVVHRTTPQLGFLL
Trigger: GAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCACTACAGTCCAGAGGAAGGTATCCACTGTGCAGCTGAAACAGGAGGCCACAAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR GCA 90 bp GGTCTCCTAGGTTTTGTTAGGTTGTTTGTGGCCTCCTGTTTCAGCTaGACAGTGGATACCTTCCTCTGGACTGTAGTGCACAGGACCACA +
Preference number: 1 (lower is better)
Translates to: GLLGFVRLFVASCFS*TVDTFLWTVVHRTT
Trigger: TGTGGTCCTGTGCACTACAGTCCAGAGGAAGGTATCCACTGTGCAGCTGAAACAGGAGGCCACAAACAACCTAACAAAACCTAGGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR TCA 90 bp ATGGGTAGTATTTCGGGTGTCAGTGAGGCCCAAACTTCCACGAATTaGATCTGGGGCTATATAGCGTGCTCGAAATACTCTGGTGGGTCC +
Preference number: 1 (lower is better)
Translates to: MGSISGVSEAQTSTN*IWGYIACSKYSGGS
Trigger: GGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAATTCGTGGAAGTTTGGGCCTCACTGACACCCGAAATACTACCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199758.5
3UTR-3UTR CCA 90 bp TGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTGCAATCTCTCTGCTaGCGGAAACCACGGAGTCTG +
Preference number: 2 (lower is better)
Translates to: CTGPHRSWGSSSSYQRCSLQSLC*RKPRSL
Trigger: CAGACTCCGTGGTTTCCGCCAGCAGAGAGATTGCAG...TGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
3UTR-3UTR GCA 90 bp AGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTGAAGTCAGGGAAGAAGGGAAGGGCTGAACACTaGGACCAGTCCTCGGGACTT +
Preference number: 2 (lower is better)
Translates to: SWGSSSSYQRCSLKSGKKGRAEH*DQSSGL
Trigger: AAGTCCCGAGGACTGGTCGCAGTGTTCAGCCCTTCC...CTTCTTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR-3UTR TCA 90 bp TGGCTGGGTCTCCTAGGTTTTGTTAGGTTGTTTGTGGCCTCCTGTTTCAGCTGCCCTAGGAGGAAGGGCTaGACACTGCGACCAGTCCTC +
Preference number: 2 (lower is better)
Translates to: WLGLLGFVRLFVASCFSCPRRKG*TLRPVL
Trigger: GAGGACTGGTCGCAGTGTTCAGCCCTTCCTCCTAGG...GCAGCTGAAACAGGAGGCCACAAACAACCTAACAAAACCTAGGAGACCCAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR-3UTR CCA 90 bp TGGTTACCCAGGCACTGCATTTTCCTGACTAGTCAACAGGCAGGCTCTTTCTTGGCAGCAGCTGAGCTGTaGTCGGCTAGACCTGCCAGC +
Preference number: 2 (lower is better)
Translates to: WLPRHCIFLTSQQAGSFLAAAEL*SARPAS
Trigger: GCTGGCAGGTCTAGCCGACCACAGCTCAGCTGCTGC...CAAGAAAGAGCCTGCCTGTTGACTAGTCAGGAAAATGCAGTGCCTGGGTAACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
3UTR-3UTR TCA 90 bp TGGTTACCCAGGCACTGCATTTTCCTGACTAGTCAACAGGCAGGCTCTTTCTTGCCTAGGAGGAAGGGCTaGACACTGCGACCAGTCCTC +
Preference number: 2 (lower is better)
Translates to: WLPRHCIFLTSQQAGSFLPRRKG*TLRPVL
Trigger: GAGGACTGGTCGCAGTGTTCAGCCCTTCCTCCTAGG...CAAGAAAGAGCCTGCCTGTTGACTAGTCAGGAAAATGCAGTGCCTGGGTAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
3UTR-3UTR TCA 90 bp TGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACAAACTTCCACGAATTaGATCTGGGGCTATATAGCG +
Preference number: 2 (lower is better)
Translates to: CTGPHRSWGSSSSYQRCSQTSTN*IWGYIA
Trigger: CGCTATATAGCCCCAGATTCAATTCGTGGAAGTTTG...TGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000199758.5
3UTR CAA 90 bp AGTCCTCGGGACTTTACTTGGCTGGGTCTCCTAGGTTTTGTTAGGTaGTTTGTGGCCTCCTGTTTCAGCTGCACAGTGGATACCTTCCTC +
Preference number: 2 (lower is better)
Translates to: SPRDFTWLGLLGFVR*FVASCFSCTVDTFL
Trigger: GAGGAAGGTATCCACTGTGCAGCTGAAACAGGAGGCCACAAACAACCTAACAAAACCTAGGAGACCCAGCCAAGTAAAGTCCCGAGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR-3UTR TCA 90 bp TGGTTACCCAGGCACTGCATTTTCCTGACTAGTCAACAGGCAGGCTCTTTCTTGCGTCACCATCCTTCCTaGACACCCATGAGTACTCCA +
Preference number: 2 (lower is better)
Translates to: WLPRHCIFLTSQQAGSFLRHHPS*TPMSTP
Trigger: TGGAGTACTCATGGGTGTTCAGGAAGGATGGTGACG...CAAGAAAGAGCCTGCCTGTTGACTAGTCAGGAAAATGCAGTGCCTGGGTAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
3UTR-3UTR CCA 90 bp AATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCACTGCATTTTCCTAGACCTGCCAGCTCATaGAGGGGTCCAACAGGGACA +
Preference number: 2 (lower is better)
Translates to: NLLRKPGRMLVTQALHFPRPASS*RGPTGT
Trigger: TGTCCCTGTTGGACCCCTCCATGAGCTGGCAGGTCT...AGGAAAATGCAGTGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
3UTR-3UTR TCA 90 bp ATTCGGAAGCAGAATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCAAGGCAGGCTCTTTCTTaGGGAAGGAGGATAGTCCTT +
Preference number: 2 (lower is better)
Translates to: IRKQNLLRKPGRMLVTQARQALS*GRRIVL
Trigger: AAGGACTATCCTCCTTCCTCAAGAAAGAGCCTGCCT...TGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATTCTGCTTCCGAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
3UTR CCA 72 bp GCCTCCTGTTTCAGCTGCACAGTGGATACCTTCCTCTaGACTGTAGTGCACAGGACCACACCGCAGCTGGGG +
Preference number: 3 (lower is better)
Translates to: ASCFSCTVDTFL*TVVHRTTPQLG
Trigger: CCCCAGCTGCGGTGTGGTCCTGTGCACTACAGTCCAGAGGAAGGTATCCACTGTGCAGCTGAAACAGGAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR TCA 72 bp GCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTaGAGTCAGGGAAGAAGGCTGCAATCTCTCTGCTGG +
Preference number: 3 (lower is better)
Translates to: AGVPPPHTSAVH*SQGRRLQSLCW
Trigger: CCAGCAGAGAGATTGCAGCCTTCTTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
3UTR CCA 72 bp GGGCTGAACACTGCGACCAGTCCTCGGGACTTTACTTaGCTGGGTCTCCTAGGTTTTGTTAGGTTGTTTGTG +
Preference number: 3 (lower is better)
Translates to: GLNTATSPRDFT*LGLLGFVRLFV
Trigger: CACAAACAACCTAACAAAACCTAGGAGACCCAGCCAAGTAAAGTCCCGAGGACTGGTCGCAGTGTTCAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
3UTR-3UTR CAA 90 bp AATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCACTGCATTTTCCTCAGGCAGGCTCTTTCTaGAGGAAGGAGGATAGTCCT +
Preference number: 3 (lower is better)
Translates to: NLLRKPGRMLVTQALHFPQAGSF*RKEDSP
Trigger: AGGACTATCCTCCTTCCTCAAGAAAGAGCCTGCCTG...AGGAAAATGCAGTGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
3UTR TCA 72 bp ATTTCGGGTGTCAGTGAGGCCCAAACTTCCACGAATTaGATCTGGGGCTATATAGCGTGCTCGAAATACTCT +
Preference number: 3 (lower is better)
Translates to: ISGVSEAQTSTN*IWGYIACSKYS
Trigger: AGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAATTCGTGGAAGTTTGGGCCTCACTGACACCCGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199758.5
CDS-3UTR GCA 90 bp GCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAACACTGCGACCAGCAGTGGGTGGGCAACTaGATCAGGCTTGATCAGGGC +
Preference number: 4 (lower is better)
Translates to: AFRPPSLTLGGRAEHCDQQWVGN*IRLDQG
Trigger: GCCCTGATCAAGCCTGATGCAGTTGCCCACCCACTG...CTGGTCGCAGTGTTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
CDS-3UTR GCA 90 bp CACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTCAGTGGGTGGGCAACTaGATCAGGCTTGATCAGGGC +
Preference number: 4 (lower is better)
Translates to: HRTTPQLGFLLLIPALFTQWVGN*IRLDQG
Trigger: GCCCTGATCAAGCCTGATGCAGTTGCCCACCCACTG...AGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR TCA 90 bp GCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAACACTGCGACCAGACCAGCGCTGTTCACTaGAGTCAGGGAAGAAGGCTG +
Preference number: 4 (lower is better)
Translates to: AFRPPSLTLGGRAEHCDQTSAVH*SQGRRL
Trigger: CAGCCTTCTTCCCTGACTTCAGTGAACAGCGCTGGT...CTGGTCGCAGTGTTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp AGTGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTTCCAGGATCAGTGGGTaGGCAACTGCATCAGGCTTG +
Preference number: 4 (lower is better)
Translates to: SAQDHTAAGVPPPHTSAVSRISG*ATASGL
Trigger: CAAGCCTGATGCAGTTGCCCACCCACTGATCCTGGA...AACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR CCA 90 bp CTCTGGACTGTAGTGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATATCCAGGATCAGTGGGTaGGCAACTGCATCAGGCTTG +
Preference number: 4 (lower is better)
Translates to: LWTVVHRTTPQLGFLLLISRISG*ATASGL
Trigger: CAAGCCTGATGCAGTTGCCCACCCACTGATCCTGGA...TATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCACTACAGTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR CCA 90 bp AACAGGGACAGTGCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAAAGCCTCCAGGATCAGTaGGTGGGCAACTGCATCAGG +
Preference number: 4 (lower is better)
Translates to: NRDSAFRPPSLTLGGRAESLQDQ*VGNCIR
Trigger: CCTGATGCAGTTGCCCACCCACTGATCCTGGAGGCT...TTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGCACTGTCCCTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
CDS-3UTR CCA 90 bp AGTGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTGTGCTCGAAATACTCTaGTGGGTCCCATCAGTGTCC +
Preference number: 4 (lower is better)
Translates to: SAQDHTAAGVPPPHTSAVVLEIL*WVPSVS
Trigger: GGACACTGATGGGACCCACCAGAGTATTTCGAGCAC...AACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
CDS-3UTR TCA 90 bp TCACTGAAGTCAGGGAAGAAGGCTGCAATCTCTCTGCTGGCGGAAACCACGGAGAGGGCTAGTGTGAGCTaGAGAGCTTGGGGACTTCGC +
Preference number: 4 (lower is better)
Translates to: SLKSGKKAAISLLAETTERASVS*RAWGLR
Trigger: GCGAAGTCCCCAAGCTCTTCAGCTCACACTAGCCCT...CTCCGTGGTTTCCGCCAGCAGAGAGATTGCAGCCTTCTTCCCTGACTTCAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR TCA 90 bp GCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAACACTGCGACCAGTATTTCGGGTGTCAGTaGGGCCCAAACTTCCACGAA +
Preference number: 4 (lower is better)
Translates to: AFRPPSLTLGGRAEHCDQYFGCQ*GPNFHE
Trigger: TTCGTGGAAGTTTGGGCCTCACTGACACCCGAAATA...CTGGTCGCAGTGTTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp CAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTGAAGTCAGGGAAGAAAGCCTCCAGGATCAGTaGGTGGGCAACTGCATCAGG +
Preference number: 4 (lower is better)
Translates to: QLGFLLLIPALFTEVREESLQDQ*VGNCIR
Trigger: CCTGATGCAGTTGCCCACCCACTGATCCTGGAGGCT...TTCTTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR CCA 90 bp GACAGTGCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAACACTGCGTGCTCGAAATACTCTaGTGGGTCCCATCAGTGTCC +
Preference number: 4 (lower is better)
Translates to: DSAFRPPSLTLGGRAEHCVLEIL*WVPSVS
Trigger: GGACACTGATGGGACCCACCAGAGTATTTCGAGCAC...GCAGTGTTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGCACTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
CDS-3UTR TCA 90 bp AGTGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCCCTCGTTCGTACAATaGGGAACTTGTTGCTCAGAA +
Preference number: 4 (lower is better)
Translates to: SAQDHTAAGVPPPHTSAVPSFVQ*GTCCSE
Trigger: TTCTGAGCAACAAGTTCCTCATTGTACGAACGAGGG...AACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR GCA 90 bp GAGTCTGAGCCATGGGTAGTATTTCGGGTGTCAGTGAGGCCCAAACTTCCACGACAGTGGGTGGGCAACTaGATCAGGCTTGATCAGGGC +
Preference number: 4 (lower is better)
Translates to: ESEPWVVFRVSVRPKLPRQWVGN*IRLDQG
Trigger: GCCCTGATCAAGCCTGATGCAGTTGCCCACCCACTG...TCGTGGAAGTTTGGGCCTCACTGACACCCGAAATACTACCCATGGCTCAGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000199758.5
CDS-3UTR CCA 90 bp TGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCAAGTGTCCTCCAAAGTTaGATGGCATCTTTGTGGGCA +
Preference number: 4 (lower is better)
Translates to: CTGPHRSWGSSSSYQRCSSVLQS*MASLWA
Trigger: TGCCCACAAAGATGCCATCCAACTTTGGAGGACACT...TGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199758.5
CDS-3UTR CCA 90 bp GCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAACACTGCGACCAGTTGTTAGGTTGTTTGTaGCCTCCTGTTTCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: AFRPPSLTLGGRAEHCDQLLGCL*PPVSAA
Trigger: TGCAGCTGAAACAGGAGGCCACAAACAACCTAACAA...CTGGTCGCAGTGTTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR TCA 90 bp TGGTTACCCAGGCACTGCATTTTCCTGACTAGTCAACAGGCAGGCTCTTTCTTGAGGGCTAGTGTGAGCTaGAGAGCTTGGGGACTTCGC +
Preference number: 4 (lower is better)
Translates to: WLPRHCIFLTSQQAGSFLRASVS*RAWGLR
Trigger: GCGAAGTCCCCAAGCTCTTCAGCTCACACTAGCCCT...CAAGAAAGAGCCTGCCTGTTGACTAGTCAGGAAAATGCAGTGCCTGGGTAACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp GGGAAGAAGGCTGCAATCTCTCTGCTGGCGGAAACCACGGAGTCTGAGCCATGGTCCTCCAAAGTTGGATaGCATCTTGTCATGAACTCC +
Preference number: 4 (lower is better)
Translates to: GKKAAISLLAETTESEPWSSKVG*HLVMNS
Trigger: GGAGTTCATGACAAGATGCCATCCAACTTTGGAGGA...CCATGGCTCAGACTCCGTGGTTTCCGCCAGCAGAGAGATTGCAGCCTTCTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
CDS-3UTR GCA 90 bp TGGTTACCCAGGCACTGCATTTTCCTGACTAGTCAACAGGCAGGCTCTTTCTTGAGGCTGCAATCTCTCTaGTGGCGGAAACCACGGAGT +
Preference number: 4 (lower is better)
Translates to: WLPRHCIFLTSQQAGSFLRLQSL*WRKPRS
Trigger: ACTCCGTGGTTTCCGCCAGCAGAGAGATTGCAGCCT...CAAGAAAGAGCCTGCCTGTTGACTAGTCAGGAAAATGCAGTGCCTGGGTAACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp AGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTGAAGTCAGGGAAGAAGTCCTCCAAAGTTGGATaGCATCTTTGTGGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: SWGSSSSYQRCSLKSGKKSSKVG*HLCGQG
Trigger: TCCTTGCCCACAAAGATGCCATCCAACTTTGGAGGA...CTTCTTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000199758.5
CDS-3UTR CCA 90 bp AATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCACTGCATTTTCCTGGACCACACCGCAGCTaGGGTTCCTCCTCCTCATAC +
Preference number: 4 (lower is better)
Translates to: NLLRKPGRMLVTQALHFPGPHRS*GSSSSY
Trigger: GTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCC...AGGAAAATGCAGTGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp CCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTGAAGTCAGGGAAAGTGTCCTCCAAAGTTaGATGGCATCTTGTCATGAA +
Preference number: 4 (lower is better)
Translates to: PQLGFLLLIPALFTEVRESVLQS*MASCHE
Trigger: TTCATGACAAGATGCCATCCAACTTTGGAGGACACT...TTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
CDS-3UTR TCA 90 bp TTTACTTGGCTGGGTCTCCTAGGTTTTGTTAGGTTGTTTGTGGCCTCCTGTTTCAGGGCTAGTGTGAGCTaGAGAGCTTGGGGACTTCGC +
Preference number: 4 (lower is better)
Translates to: FTWLGLLGFVRLFVASCFRASVS*RAWGLR
Trigger: GCGAAGTCCCCAAGCTCTTCAGCTCACACTAGCCCT...GAAACAGGAGGCCACAAACAACCTAACAAAACCTAGGAGACCCAGCCAAGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
CDS-3UTR TCA 90 bp CAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCACTGAAGTCAGGGAAGAACAAACTTCCACGAATTaGATCTGGGGCTATATAGCG +
Preference number: 4 (lower is better)
Translates to: QLGFLLLIPALFTEVREEQTSTN*IWGYIA
Trigger: CGCTATATAGCCCCAGATTCAATTCGTGGAAGTTTG...TTCTTCCCTGACTTCAGTGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
CDS-3UTR CCA 90 bp ATTCGGAAGCAGAATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCACTGCAATCTCTCTGCTaGCGGAAACCACGGAGTCTG +
Preference number: 4 (lower is better)
Translates to: IRKQNLLRKPGRMLVTQALQSLC*RKPRSL
Trigger: CAGACTCCGTGGTTTCCGCCAGCAGAGAGATTGCAG...TGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATTCTGCTTCCGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp AATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCACTGCATTTTCCTTCCAGGATCAGTGGGTaGGCAACTGCATCAGGCTTG +
Preference number: 4 (lower is better)
Translates to: NLLRKPGRMLVTQALHFPSRISG*ATASGL
Trigger: CAAGCCTGATGCAGTTGCCCACCCACTGATCCTGGA...AGGAAAATGCAGTGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR TCA 90 bp TGGTTACCCAGGCACTGCATTTTCCTGACTAGTCAACAGGCAGGCTCTTTCTTGCCCTCGTTCGTACAATaGGGAACTTGTTGCTCAGAA +
Preference number: 4 (lower is better)
Translates to: WLPRHCIFLTSQQAGSFLPSFVQ*GTCCSE
Trigger: TTCTGAGCAACAAGTTCCTCATTGTACGAACGAGGG...CAAGAAAGAGCCTGCCTGTTGACTAGTCAGGAAAATGCAGTGCCTGGGTAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp ATTCGGAAGCAGAATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCATCCTCCAAAGTTGGATaGCATCTTTGTGGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: IRKQNLLRKPGRMLVTQASSKVG*HLCGQG
Trigger: TCCTTGCCCACAAAGATGCCATCCAACTTTGGAGGA...TGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATTCTGCTTCCGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CCA 90 bp ATTCGGAAGCAGAATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCAAGTGTCCTCCAAAGTTaGATGGCATCTTTGTGGGCA +
Preference number: 4 (lower is better)
Translates to: IRKQNLLRKPGRMLVTQASVLQS*MASLWA
Trigger: TGCCCACAAAGATGCCATCCAACTTTGGAGGACACT...TGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATTCTGCTTCCGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR TCA 90 bp AAGCAGAATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCACTGCATCAAACTTCCACGAATTaGATCTGGGGCTATATAGCG +
Preference number: 4 (lower is better)
Translates to: KQNLLRKPGRMLVTQALHQTSTN*IWGYIA
Trigger: CGCTATATAGCCCCAGATTCAATTCGTGGAAGTTTG...ATGCAGTGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATTCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS-3UTR CAA 90 bp AGTGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTGCAACTGCATCAGGCTaGATCAGGGCTAGTGTGAGC +
Preference number: 5 (lower is better)
Translates to: SAQDHTAAGVPPPHTSAVATASG*IRASVS
Trigger: GCTCACACTAGCCCTGATCAAGCCTGATGCAGTTGC...AACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR CAA 90 bp TGCACAGGACCACACCGCAGCTGGGGTTCCTCCTCCTCATACCAGCGCTGTTCAGCAACTGCATCAGGCTaGATCAGGGCTAGTGTGAGC +
Preference number: 5 (lower is better)
Translates to: CTGPHRSWGSSSSYQRCSATASG*IRASVS
Trigger: GCTCACACTAGCCCTGATCAAGCCTGATGCAGTTGC...TGAACAGCGCTGGTATGAGGAGGAGGAACCCCAGCTGCGGTGTGGTCCTGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS-3UTR CAA 90 bp GCCTTCAGACCACCTTCCCTGACCCTAGGAGGAAGGGCTGAACACTGCGACCAGTGTGAGCTGAAGAGCTaGGGGACTTCGCAAGATGGA +
Preference number: 5 (lower is better)
Translates to: AFRPPSLTLGGRAEHCDQCELKS*GTSQDG
Trigger: TCCATCTTGCGAAGTCCCCAAGCTCTTCAGCTCACA...CTGGTCGCAGTGTTCAGCCCTTCCTCCTAGGGTCAGGGAAGGTGGTCTGAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
CDS-3UTR CAA 90 bp TCACTGAAGTCAGGGAAGAAGGCTGCAATCTCTCTGCTGGCGGAAACCACGGAGTGTGAGCTGAAGAGCTaGGGGACTTCGCAAGATGGA +
Preference number: 5 (lower is better)
Translates to: SLKSGKKAAISLLAETTECELKS*GTSQDG
Trigger: TCCATCTTGCGAAGTCCCCAAGCTCTTCAGCTCACA...CTCCGTGGTTTCCGCCAGCAGAGAGATTGCAGCCTTCTTCCCTGACTTCAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000197627.5
ENSMUST00000199758.5
CDS TCA 90 bp TCCGGCAGTCCTCCAGCTTCCACTGCAGTTCCCTCGTTCGTACAATaGGGAACTTGTTGCTCAGAATCTGCTGATGAACAGCCTCCAGGA +
Preference number: 5 (lower is better)
Translates to: SGSPPASTAVPSFVQ*GTCCSESADEQPPG
Trigger: TCCTGGAGGCTGTTCATCAGCAGATTCTGAGCAACAAGTTCCTCATTGTACGAACGAGGGAACTGCAGTGGAAGCTGGAGGACTGCCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
ENSMUST00000199758.5
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2
CDS CCA 90 bp CTCGAAATACTCTGGTGGGTCCCATCAGTGTCCTCCAAAGTTGGATaGCATCTTTGTGGGCAAGGATATAGGCTCGGATTGGCCCACTTG +
Preference number: 5 (lower is better)
Translates to: LEILWWVPSVSSKVG*HLCGQGYRLGLAHL
Trigger: CAAGTGGGCCAATCCGAGCCTATATCCTTGCCCACAAAGATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035053.12
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2
CDS-3UTR CAA 90 bp ATTCGGAAGCAGAATTTATTAAGGAAGCCAGGTCGGATGCTGGTTACCCAGGCAGCAACTGCATCAGGCTaGATCAGGGCTAGTGTGAGC +
Preference number: 5 (lower is better)
Translates to: IRKQNLLRKPGRMLVTQAATASG*IRASVS
Trigger: GCTCACACTAGCCCTGATCAAGCCTGATGCAGTTGC...TGCCTGGGTAACCAGCATCCGACCTGGCTTCCTTAATAAATTCTGCTTCCGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS CCA 90 bp CACGAATTGAATCTGGGGCTATATAGCGTGCTCGAAATACTCTGGTaGGTCCCATCAGTGTCCTCCAAAGTTGGATGGCATCTTTGTGGG +
Preference number: 5 (lower is better)
Translates to: HELNLGLYSVLEILW*VPSVSSKVGWHLCG
Trigger: CCCACAAAGATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAATTCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035053.12
ENSMUST00000200005.5
ENSMUST00000200468.2
CDS-3UTR CAA 90 bp AGCCAGGTCGGATGCTGGTTACCCAGGCACTGCATTTTCCTGACTAGTCAACAGGTTTTGTTAGGTTGTTaGTGGCCTCCTGTTTCAGCT +
Preference number: 5 (lower is better)
Translates to: SQVGCWLPRHCIFLTSQQVLLGC*WPPVSA
Trigger: AGCTGAAACAGGAGGCCACAAACAACCTAACAAAAC...CTGTTGACTAGTCAGGAAAATGCAGTGCCTGGGTAACCAGCATCCGACCTGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035053.12
CDS CCA 90 bp CACGAATTGAATCTGGGGCTATATAGCGTGCTCGAAATACTCTGGTaGGTCCCATCAGTGTCCTCCAAAGTTGGATGGCATCTTGTCATG +
Preference number: 5 (lower is better)
Translates to: HELNLGLYSVLEILW*VPSVSSKVGWHLVM
Trigger: CATGACAAGATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAATTCGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
CDS CCA 90 bp TTCCACGAATTGAATCTGGGGCTATATAGCGTGCTCGAAATACTCTaGTGGGTCCCATCAGTGTCCTCCAAAGTTGGATGGCATCTTGTC +
Preference number: 5 (lower is better)
Translates to: FHELNLGLYSVLEIL*WVPSVSSKVGWHLV
Trigger: GACAAGATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAATTCGTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000197627.5
CDS CCA 90 bp TTCCACGAATTGAATCTGGGGCTATATAGCGTGCTCGAAATACTCTaGTGGGTCCCATCAGTGTCCTCCAAAGTTGGATGGCATCTTTGT +
Preference number: 5 (lower is better)
Translates to: FHELNLGLYSVLEIL*WVPSVSSKVGWHLC
Trigger: ACAAAGATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAATTCGTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000035053.12
ENSMUST00000200005.5
ENSMUST00000200468.2
CDS CAA 90 bp GCGTGCTCGAAATACTCTGGTGGGTCCCATCAGTGTCCTCCAAAGTaGGATGGCATCTTTGTGGGCAAGGATATAGGCTCGGATTGGCCC +
Preference number: 6 (lower is better)
Translates to: ACSKYSGGSHQCPPK*DGIFVGKDIGSDWP
Trigger: GGGCCAATCCGAGCCTATATCCTTGCCCACAAAGATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035053.12
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2
CDS CCA 72 bp GATGGCATCTTTGTGGGCAAGGATATAGGCTCGGATTaGCCCACTTGTCATGAACTCCACCAGCCGCTGATA +
Preference number: 6 (lower is better)
Translates to: DGIFVGKDIGSD*PTCHELHQPLI
Trigger: TATCAGCGGCTGGTGGAGTTCATGACAAGTGGGCCAATCCGAGCCTATATCCTTGCCCACAAAGATGCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035053.12
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2
CDS CCA 72 bp CTCTGGTGGGTCCCATCAGTGTCCTCCAAAGTTGGATaGCATCTTTGTGGGCAAGGATATAGGCTCGGATTG +
Preference number: 6 (lower is better)
Translates to: LWWVPSVSSKVG*HLCGQGYRLGL
Trigger: CAATCCGAGCCTATATCCTTGCCCACAAAGATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035053.12
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2
CDS TCA 72 bp CCTCCAGCTTCCACTGCAGTTCCCTCGTTCGTACAATaGGGAACTTGTTGCTCAGAATCTGCTGATGAACAG +
Preference number: 6 (lower is better)
Translates to: PPASTAVPSFVQ*GTCCSESADEQ
Trigger: CTGTTCATCAGCAGATTCTGAGCAACAAGTTCCTCATTGTACGAACGAGGGAACTGCAGTGGAAGCTGGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
ENSMUST00000199758.5
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2
CDS CCA 72 bp AATCTGGGGCTATATAGCGTGCTCGAAATACTCTGGTaGGTCCCATCAGTGTCCTCCAAAGTTGGATGGCAT +
Preference number: 6 (lower is better)
Translates to: NLGLYSVLEILW*VPSVSSKVGWH
Trigger: ATGCCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2
CDS CCA 72 bp TTGAATCTGGGGCTATATAGCGTGCTCGAAATACTCTaGTGGGTCCCATCAGTGTCCTCCAAAGTTGGATGG +
Preference number: 6 (lower is better)
Translates to: LNLGLYSVLEIL*WVPSVSSKVGW
Trigger: CCATCCAACTTTGGAGGACACTGATGGGACCCACCAGAGTATTTCGAGCACGCTATATAGCCCCAGATTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000035053.12
ENSMUST00000197627.5
ENSMUST00000200005.5
ENSMUST00000200345.5
ENSMUST00000200468.2