RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NME5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035984

Ensembl transcript IDs: ENSMUST00000079287.12, ENSMUST00000134875.8, ENSMUST00000155114.2

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGAGCCAGAGGTAAGGGTCTGGTGGCTTTTCCTTACAAAGCTCTGTaGGTCCTTGAAGTAGGGTTGGCGCTACGTACAAGTTTATGTAGT +
Preference number: 1 (lower is better)
Translates to: RARGKGLVAFPYKAL*VLEVGLALRTSLCS
Trigger: ACTACATAAACTTGTACGTAGCGCCAACCCTACTTCAAGGACTCACAGAGCTTTGTAAGGAAAAGCCACCAGACCCTTACCTCTGGCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
3UTR CCA 90 bp AACTTGGCTCTCGCTCTGAGGAGCAATCTAAGGCTCTTCTGTCACTaGGAAATGACAAAGTTTAGGTTTGTTGGGATTATTTTTCATCAG +
Preference number: 1 (lower is better)
Translates to: NLALALRSNLRLFCH*EMTKFRFVGIIFHQ
Trigger: CTGATGAAAAATAATCCCAACAAACCTAAACTTTGTCATTTCCCAGTGACAGAAGAGCCTTAGATTGCTCCTCAGAGCGAGAGCCAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
3UTR-3UTR TCA 90 bp TTGGCTCTCGCTCTGAGGAGCAATCTAAGGCTCTTCTGTCACTGGGAAATGACAAGCTCTGTGAGTCCTTaGAGTAGGGTTGGCGCTACG +
Preference number: 2 (lower is better)
Translates to: LALALRSNLRLFCHWEMTSSVSP*SRVGAT
Trigger: CGTAGCGCCAACCCTACTTCAAGGACTCACAGAGCT...TGTCATTTCCCAGTGACAGAAGAGCCTTAGATTGCTCCTCAGAGCGAGAGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
3UTR-3UTR TCA 90 bp TTTCATCAGCCAATCAGCGAGCCAGAGGTAAGGGTCTGGTGGCTTTTCCTTACACCTTACAAAGCTCTGTaGGTCCTTGAAGTAGGGTTG +
Preference number: 2 (lower is better)
Translates to: FHQPISEPEVRVWWLFLTPYKAL*VLEVGL
Trigger: CAACCCTACTTCAAGGACTCACAGAGCTTTGTAAGG...TGTAAGGAAAAGCCACCAGACCCTTACCTCTGGCTCGCTGATTGGCTGATGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
3UTR-3UTR CCA 90 bp TTGGCTCTCGCTCTGAGGAGCAATCTAAGGCTCTTCTGTCACTGGGAAATGACACCAGAGGTAAGGGTCTaGTGGCTTTTCCTTACAAAG +
Preference number: 2 (lower is better)
Translates to: LALALRSNLRLFCHWEMTPEVRV*WLFLTK
Trigger: CTTTGTAAGGAAAAGCCACCAGACCCTTACCTCTGG...TGTCATTTCCCAGTGACAGAAGAGCCTTAGATTGCTCCTCAGAGCGAGAGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
3UTR-3UTR CAA 90 bp CCAGAGGTAAGGGTCTGGTGGCTTTTCCTTACAAAGCTCTGTGAGTCCTTGAAGGTAGTCCTTAGCGGCTaGTCCAATTGGAATGGGTTC +
Preference number: 3 (lower is better)
Translates to: PEVRVWWLFLTKLCESLKVVLSG*SNWNGF
Trigger: GAACCCATTCCAATTGGACAAGCCGCTAAGGACTAC...CTTCAAGGACTCACAGAGCTTTGTAAGGAAAAGCCACCAGACCCTTACCTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155114.2
3UTR TCA 72 bp GGTAAGGGTCTGGTGGCTTTTCCTTACAAAGCTCTGTaGGTCCTTGAAGTAGGGTTGGCGCTACGTACAAGT +
Preference number: 3 (lower is better)
Translates to: GKGLVAFPYKAL*VLEVGLALRTS
Trigger: ACTTGTACGTAGCGCCAACCCTACTTCAAGGACTCACAGAGCTTTGTAAGGAAAAGCCACCAGACCCTTACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
3UTR CCA 72 bp TTTCATCAGCCAATCAGCGAGCCAGAGGTAAGGGTCTaGTGGCTTTTCCTTACAAAGCTCTGTGAGTCCTTG +
Preference number: 3 (lower is better)
Translates to: FHQPISEPEVRV*WLFLTKLCESL
Trigger: CAAGGACTCACAGAGCTTTGTAAGGAAAAGCCACCAGACCCTTACCTCTGGCTCGCTGATTGGCTGATGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
3UTR CCA 72 bp CTCGCTCTGAGGAGCAATCTAAGGCTCTTCTGTCACTaGGAAATGACAAAGTTTAGGTTTGTTGGGATTATT +
Preference number: 3 (lower is better)
Translates to: LALRSNLRLFCH*EMTKFRFVGII
Trigger: AATAATCCCAACAAACCTAAACTTTGTCATTTCCCAGTGACAGAAGAGCCTTAGATTGCTCCTCAGAGCGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
CDS-3UTR TCA 90 bp TTTCATCAGCCAATCAGCGAGCCAGAGGTAAGGGTCTGGTGGCTTTTCCTTACATTTTCTACATATATCTaGGGCAGGGGCATTGATACC +
Preference number: 4 (lower is better)
Translates to: FHQPISEPEVRVWWLFLTFSTYI*GRGIDT
Trigger: GGTATCAATGCCCCTGCCTCAGATATATGTAGAAAA...TGTAAGGAAAAGCCACCAGACCCTTACCTCTGGCTCGCTGATTGGCTGATGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
CDS-3UTR CCA 90 bp GGTTGGCGCTACGTACAAGTTTATGTAGTCCTTAGCGGCTTGTCCAATTGGAATCCGGGTGTGTCTCCTTaGCTACTAAACTGTTACTTG +
Preference number: 4 (lower is better)
Translates to: GWRYVQVYVVLSGLSNWNPGVSP*LLNCYL
Trigger: CAAGTAACAGTTTAGTAGCCAAGGAGACACACCCGG...ATTCCAATTGGACAAGCCGCTAAGGACTACATAAACTTGTACGTAGCGCCAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134875.8
CDS-3UTR TCA 90 bp TGGCGCTACGTACAAGTTTATGTAGTCCTTAGCGGCTTGTCCAATTGGAATGGGTTTTCTACATATATCTaGGGCAGGGGCATTGATACC +
Preference number: 4 (lower is better)
Translates to: WRYVQVYVVLSGLSNWNGFSTYI*GRGIDT
Trigger: GGTATCAATGCCCCTGCCTCAGATATATGTAGAAAA...CCCATTCCAATTGGACAAGCCGCTAAGGACTACATAAACTTGTACGTAGCGCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000134875.8
ENSMUST00000155114.2
CDS TCA 90 bp CTCGCTCTGAGGCAGCGAAGTCATTGCTCCCATGAAGTGCGTTCCTaGGCTCGTCTGTACCGTATATCGCCCTTAAGCTGTCCGGGTGTG +
Preference number: 5 (lower is better)
Translates to: LALRQRSHCSHEVRS*ARLYRISPLSCPGV
Trigger: CACACCCGGACAGCTTAAGGGCGATATACGGTACAGACGAGCTCAGGAACGCACTTCATGGGAGCAATGACTTCGCTGCCTCAGAGCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079287.12
CDS TCA 90 bp GGGTTCAATAATCACGGCTGGAAACATGAACCTGATCTCTCGCTCTaGGGCAGCGAAGTCATTGCTCCCATGAAGTGCGTTCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: GFNNHGWKHEPDLSL*GSEVIAPMKCVPEL
Trigger: GAGCTCAGGAACGCACTTCATGGGAGCAATGACTTCGCTGCCTCAGAGCGAGAGATCAGGTTCATGTTTCCAGCCGTGATTATTGAACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079287.12
CDS TCA 72 bp AGGCAGCGAAGTCATTGCTCCCATGAAGTGCGTTCCTaGGCTCGTCTGTACCGTATATCGCCCTTAAGCTGT +
Preference number: 6 (lower is better)
Translates to: RQRSHCSHEVRS*ARLYRISPLSC
Trigger: ACAGCTTAAGGGCGATATACGGTACAGACGAGCTCAGGAACGCACTTCATGGGAGCAATGACTTCGCTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079287.12
CDS TCA 72 bp AATCACGGCTGGAAACATGAACCTGATCTCTCGCTCTaGGGCAGCGAAGTCATTGCTCCCATGAAGTGCGTT +
Preference number: 6 (lower is better)
Translates to: NHGWKHEPDLSL*GSEVIAPMKCV
Trigger: AACGCACTTCATGGGAGCAATGACTTCGCTGCCTCAGAGCGAGAGATCAGGTTCATGTTTCCAGCCGTGATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079287.12
CDS CAA 72 bp CCGTATATCGCCCTTAAGCTGTCCGGGTGTGTCTCCTaGGCTACTAAACTGTTACTTGGTCCCATAAGTTCT +
Preference number: 6 (lower is better)
Translates to: PYIALKLSGCVS*ATKLLLGPISS
Trigger: AGAACTTATGGGACCAAGTAACAGTTTAGTAGCCAAGGAGACACACCCGGACAGCTTAAGGGCGATATACGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079287.12
CDS TCA 72 bp CTACAGTGCTCGGGGCTCAGGTGTAGTTTCCGTCTCTaGATAATGGTGAATCCAGATCCCAGAATAATATCC +
Preference number: 6 (lower is better)
Translates to: LQCSGLRCSFRL*IMVNPDPRIIS
Trigger: GGATATTATTCTGGGATCTGGATTCACCATTATTCAGAGACGGAAACTACACCTGAGCCCCGAGCACTGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000079287.12
ENSMUST00000134875.8
CDS CAA 72 bp TGGCGCTACGTACAAGTTTATGTAGTCCTTAGCGGCTaGTCCAATTGGAATGGGTTCAATAATCACGGCTGG +
Preference number: 6 (lower is better)
Translates to: WRYVQVYVVLSG*SNWNGFNNHGW
Trigger: CCAGCCGTGATTATTGAACCCATTCCAATTGGACAAGCCGCTAAGGACTACATAAACTTGTACGTAGCGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000079287.12