Pregenerated sensors for NME3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073435Ensembl transcript IDs: ENSMUST00000024978.7
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AAGGGGTGGGAGTGGTTGTCCCTGGACCGACTAGGTTaGGTTGACCTGCACTCACACAGCACTGTTACTGAT | + |
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Preference number: 3 (lower is better) Translates to: KGWEWLSLDRLG*VDLHSHSTVTD Trigger: ATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCCAACCTAGTCGGTCCAGGGACAACCACTCCCACCCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| 3UTR CCA 72 bp | TGCAGTTTTATTATGAAAGGCAACAAGGGGTGGGAGTaGTTGTCCCTGGACCGACTAGGTTGGGTTGACCTG | + |
|
Preference number: 3 (lower is better) Translates to: CSFIMKGNKGWE*LSLDRLGWVDL Trigger: CAGGTCAACCCAACCTAGTCGGTCCAGGGACAACCACTCCCACCCCTTGTTGCCTTTCATAATAAAACTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR CCA 90 bp | CTGCAGTTTTATTATGAAAGGCAACAAGGGGTGGGAGTGGTTGTCCCTGGACCGGCCCTTGCCACACCATaGCCACCACGGGGCCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: LQFYYERQQGVGVVVPGPALATP*PPRGQN Trigger: GTTCTGGCCCCGTGGTGGCCATGGTGTGGCAAGGGC...CGGTCCAGGGACAACCACTCCCACCCCTTGTTGCCTTTCATAATAAAACTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR GCA 90 bp | GGTTGGGTTGACCTGCACTCACACAGCACTGTTACTGATGCTGAGCTCTGTGAAACGACATCCAGCCCTTaGCACACCATGGCCACCACG | + |
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Preference number: 4 (lower is better) Translates to: GWVDLHSHSTVTDAELCETTSSP*HTMATT Trigger: CGTGGTGGCCATGGTGTGGCAAGGGCTGGATGTCGT...TTCACAGAGCTCAGCATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCCAACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR TCA 90 bp | TGGGTTGACCTGCACTCACACAGCACTGTTACTGATGCTGAGCTCTGTGAAGATTCAGTGCCACCAGCTTaGAGCCCTTCCTCTCAAAGC | + |
|
Preference number: 4 (lower is better) Translates to: WVDLHSHSTVTDAELCEDSVPPA*SPSSQS Trigger: GCTTTGAGAGGAAGGGCTTCAAGCTGGTGGCACTGA...ATCTTCACAGAGCTCAGCATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR TCA 90 bp | GGGTTGACCTGCACTCACACAGCACTGTTACTGATGCTGAGCTCTGTGAAGATCAGAGCGATTTCTCTGTaGGCACTTTCCACCGAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: GLTCTHTALLLMLSSVKIRAISL*ALSTES Trigger: CGACTCGGTGGAAAGTGCTCACAGAGAAATCGCTCT...GATCTTCACAGAGCTCAGCATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR GCA 90 bp | TGGGTTGACCTGCACTCACACAGCACTGTTACTGATGCTGAGCTCTGTGAAGATTCTTGCCAACCTCCATaGAGAAATCCCCACGGATCG | + |
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Preference number: 4 (lower is better) Translates to: WVDLHSHSTVTDAELCEDSCQPP*RNPHGS Trigger: CGATCCGTGGGGATTTCTGCATGGAGGTTGGCAAGA...ATCTTCACAGAGCTCAGCATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR GCA 90 bp | CGACTAGGTTGGGTTGACCTGCACTCACACAGCACTGTTACTGATGCTGAGCTCCATGAATTACATTCTTaGCAACCTCCATGCAGAAAT | + |
|
Preference number: 4 (lower is better) Translates to: RLGWVDLHSHSTVTDAELHELHS*QPPCRN Trigger: ATTTCTGCATGGAGGTTGGCAAGAATGTAATTCATG...GAGCTCAGCATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCCAACCTAGTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR CAA 90 bp | CGACTAGGTTGGGTTGACCTGCACTCACACAGCACTGTTACTGATGCTGAGCTCCACGACATCCAGCCCTaGCCACACCATGGCCACCAC | + |
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Preference number: 5 (lower is better) Translates to: RLGWVDLHSHSTVTDAELHDIQP*PHHGHH Trigger: GTGGTGGCCATGGTGTGGCAAGGGCTGGATGTCGTG...GAGCTCAGCATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCCAACCTAGTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS-3UTR CAA 90 bp | GGGTTGACCTGCACTCACACAGCACTGTTACTGATGCTGAGCTCTGTGAAGATCTTCAGTGCCACCAGCTaGAAGCCCTTCCTCTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: GLTCTHTALLLMLSSVKIFSATS*KPFLSK Trigger: CTTTGAGAGGAAGGGCTTCAAGCTGGTGGCACTGAA...GATCTTCACAGAGCTCAGCATCAGTAACAGTGCTGTGTGAGTGCAGGTCAACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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| CDS TCA 72 bp | TGCCAAGAACGTGCGCTCGTTCACGCCGCTGTAGGCTaGGGGGAAGAGGTTAGCAAAGATGGTCAGCACCAG | + |
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Preference number: 6 (lower is better) Translates to: CQERALVHAAVG*GEEVSKDGQHQ Trigger: CTGGTGCTGACCATCTTTGCTAACCTCTTCCCCTCAGCCTACAGCGGCGTGAACGAGCGCACGTTCTTGGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024978.7 |
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