Pregenerated sensors for NME2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020857Ensembl transcript IDs: ENSMUST00000021217.11, ENSMUST00000072566.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TGTTTTAGAAAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTGTCCAGAACCCACCAGGCCGCGCTaGACGCCATCTGGCTTGATG | + |
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Preference number: 4 (lower is better) Translates to: CFRKDDPSCQWDEELCPEPTRPR*TPSGLM Trigger: CATCAAGCCAGATGGCGTGCAGCGCGGCCTGGTGGG...TTCTGGACAGAGCTCTTCATCCCACTGACAGGATGGATCATCTTTTCTAAAACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR GCA 90 bp | CTTTATTGTTTTAGAAAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTGTCCCACCAGGCCGCGCTaGACGCCATCTGGCTTGATG | + |
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Preference number: 4 (lower is better) Translates to: LYCFRKDDPSCQWDEELCPTRPR*TPSGLM Trigger: CATCAAGCCAGATGGCGTGCAGCGCGGCCTGGTGGG...ACAGAGCTCTTCATCCCACTGACAGGATGGATCATCTTTTCTAAAACAATAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR GCA 90 bp | AAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTGTCCAGAAACCCATCAGAGGCGGAACCCCTTCTaGTCGAACCGTTTGATGATC | + |
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Preference number: 4 (lower is better) Translates to: KDDPSCQWDEELCPETHQRRNPF*SNRLMI Trigger: GATCATCAAACGGTTCGAGCAGAAGGGGTTCCGCCT...CTGATGGGTTTCTGGACAGAGCTCTTCATCCCACTGACAGGATGGATCATCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR GCA 90 bp | ATTGTTTTAGAAAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTGTCCAGAGGCGGAACCCCTTCTaGTCGAACCGTTTGATGATC | + |
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Preference number: 4 (lower is better) Translates to: IVLEKMIHPVSGMKSSVQRRNPF*SNRLMI Trigger: GATCATCAAACGGTTCGAGCAGAAGGGGTTCCGCCT...CTGGACAGAGCTCTTCATCCCACTGACAGGATGGATCATCTTTTCTAAAACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR CCA 90 bp | AGAAAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTGTCCAGAAACCCATAGAAATCCCCACGGATaGTGCCTGGTTTTGAATCAG | + |
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Preference number: 4 (lower is better) Translates to: RKDDPSCQWDEELCPETHRNPHG*CLVLNQ Trigger: CTGATTCAAAACCAGGCACCATCCGTGGGGATTTCT...ATGGGTTTCTGGACAGAGCTCTTCATCCCACTGACAGGATGGATCATCTTTTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR CCA 90 bp | TGTTTTAGAAAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTGTCCAGAAAGAAATCCCCACGGATaGTGCCTGGTTTTGAATCAG | + |
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Preference number: 4 (lower is better) Translates to: CFRKDDPSCQWDEELCPERNPHG*CLVLNQ Trigger: CTGATTCAAAACCAGGCACCATCCGTGGGGATTTCT...TTCTGGACAGAGCTCTTCATCCCACTGACAGGATGGATCATCTTTTCTAAAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR CAA 90 bp | AGTGGGATGAAGAGCTCTGTCCAGAAACCCATCAGTAGTGCTGAAAAGGATTCTTGCACGCCATCTGGCTaGATGGCAATGAAGGTACGC | + |
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Preference number: 5 (lower is better) Translates to: SGMKSSVQKPISSAEKDSCTPSG*MAMKVR Trigger: GCGTACCTTCATTGCCATCAAGCCAGATGGCGTGCA...AGAATCCTTTTCAGCACTACTGATGGGTTTCTGGACAGAGCTCTTCATCCCACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR CAA 90 bp | TGTTTTAGAAAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTGTCCAGAATGCACGCCATCTGGCTaGATGGCAATGAAGGTACGC | + |
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Preference number: 5 (lower is better) Translates to: CFRKDDPSCQWDEELCPECTPSG*MAMKVR Trigger: GCGTACCTTCATTGCCATCAAGCCAGATGGCGTGCA...TTCTGGACAGAGCTCTTCATCCCACTGACAGGATGGATCATCTTTTCTAAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR CAA 90 bp | AGTGGGATGAAGAGCTCTGTCCAGAAACCCATCAGTAGTGCTGAAAAGGATTCTTTTGAATCAGCTGGATaGGTCTCCCCCAGCATCACT | + |
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Preference number: 5 (lower is better) Translates to: SGMKSSVQKPISSAEKDSFESAG*VSPSIT Trigger: AGTGATGCTGGGGGAGACCAATCCAGCTGATTCAAA...AGAATCCTTTTCAGCACTACTGATGGGTTTCTGGACAGAGCTCTTCATCCCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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| CDS-3UTR CAA 90 bp | GTCTTTATTGTTTTAGAAAAGATGATCCATCCTGTCAGTGGGATGAAGAGCTCTTTTGAATCAGCTGGATaGGTCTCCCCCAGCATCACT | + |
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Preference number: 5 (lower is better) Translates to: VFIVLEKMIHPVSGMKSSFESAG*VSPSIT Trigger: AGTGATGCTGGGGGAGACCAATCCAGCTGATTCAAA...AGAGCTCTTCATCCCACTGACAGGATGGATCATCTTTTCTAAAACAATAAAGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000021217.11 ENSMUST00000072566.5 |
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