RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NME1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037601

Ensembl transcript IDs: ENSMUST00000107844.3, ENSMUST00000135884.8

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTaGCTTTTGAGAGGATCTAGCTGCATAGCCCTGGCTGGACTGCAC +
Preference number: 1 (lower is better)
Translates to: PEVCVGSHLPSQLVG*LLRGSSCIALAGLH
Trigger: GTGCAGTCCAGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 90 bp TGTAGTCTAGGCTGGCCTGGAATTCATCCCCCTGCCTCTGTCTCCTaGGTGTTAGAATTACAGGCCTGGGCCAACAGGCTTGGCTTGGCA +
Preference number: 1 (lower is better)
Translates to: CSLGWPGIHPPASVS*VLELQAWANRLGLA
Trigger: TGCCAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAACACTCAGGAGACAGAGGCAGGGGGATGAATTCCAGGCCAGCCTAGACTACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 90 bp CAGAGCATCCAACTAGGATGCACCGACTGCCATTTGCCCTCACTCTaGGCCCATTTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCG +
Preference number: 1 (lower is better)
Translates to: QSIQLGCTDCHLPSL*AHFLHSQPEVCVGS
Trigger: CGAGCCCACACACACTTCAGGCTGAGAATGAAGGAAATGGGCCCAGAGTGAGGGCAAATGGCAGTCGGTGCATCCTAGTTGGATGCTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR GCA 90 bp AAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTGGCTAAAGACCTaGTTGGACAGAACAGCCCTCTGCTCACTGGCCATTAGGATGAGC +
Preference number: 1 (lower is better)
Translates to: KPPSPAPLHQPWLKT*LDRTALCSLAIRMS
Trigger: GCTCATCCTAATGGCCAGTGAGCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 90 bp TCAAAATGCCTGAAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTaGCTAAAGACCTGCTTGGACAGAACAGCCCTCTGCTCACTGGCC +
Preference number: 1 (lower is better)
Translates to: SKCLKPPSPAPLHQP*LKTCLDRTALCSLA
Trigger: GGCCAGTGAGCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR GCA 90 bp GCATTGCCCAAGGCACTGAGCCTAACTAGCGCAGATGAGTCAAAATaGCTGAAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTGGCTA +
Preference number: 1 (lower is better)
Translates to: ALPKALSLTSADESK*LKPPSPAPLHQPWL
Trigger: TAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCATCTGCGCTAGTTAGGCTCAGTGCCTTGGGCAATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 90 bp CAAGTGACTCTAGCCCTGGTCTCATCGAGAGAATATACCCTGCTTTaGTGCCTCCCTGCATCTCTAAAGGAACCGGCAAGCTCTCTATGT +
Preference number: 1 (lower is better)
Translates to: QVTLALVSSREYTLL*CLPASLKEPASSLC
Trigger: ACATAGAGAGCTTGCCGGTTCCTTTAGAGATGCAGGGAGGCATCAAAGCAGGGTATATTCTCTCGATGAGACCAGGGCTAGAGTCACTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 90 bp GGACACCAGCTGACGGTCCCAGGCCTACAGAACACATGGGTTTTCTaGTCTGATGGTAGCTACAACGTCTCACAATTTTCTTGGTTTGTT +
Preference number: 1 (lower is better)
Translates to: GHQLTVPGLQNTWVF*SDGSYNVSQFSWFV
Trigger: AACAAACCAAGAAAATTGTGAGACGTTGTAGCTACCATCAGATCAGAAAACCCATGTGTTCTGTAGGCCTGGGACCGTCAGCTGGTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 90 bp CTCTGTCTCCTGAGTGTTAGAATTACAGGCCTGGGCCAACAGGCTTaGCTTGGCATCTTTATTTCTAATGAATTCTCTGTTCCCAGAACA +
Preference number: 1 (lower is better)
Translates to: LCLLSVRITGLGQQA*LGIFISNEFSVPRT
Trigger: TGTTCTGGGAACAGAGAATTCATTAGAAATAAAGATGCCAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAACACTCAGGAGACAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 90 bp GCCACCACTCTCCCATGTTTTGGAGTTACCAAATGTCAACTGTACTaGGAATCTGCAAATTTCACTGAACTTACCTGTCGGGTGAAGAGT +
Preference number: 1 (lower is better)
Translates to: ATTLPCFGVTKCQLY*ESANFTELTCRVKS
Trigger: ACTCTTCACCCGACAGGTAAGTTCAGTGAAATTTGCAGATTCTCAGTACAGTTGACATTTGGTAACTCCAAAACATGGGAGAGTGGTGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 90 bp CAAAGAAATGCCCTTGTGTCTCAGGGTGGTGGCTCAAACCACAAATaGAAAGAATCTCTGTGTGCACATGAGGCCAATATAAGTAATTTG +
Preference number: 1 (lower is better)
Translates to: QRNALVSQGGGSNHK*KESLCAHEANISNL
Trigger: CAAATTACTTATATTGGCCTCATGTGCACACAGAGATTCTTTTCATTTGTGGTTTGAGCCACCACCCTGAGACACAAGGGCATTTCTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CCA 90 bp GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCGCTTGGAGCCTGAGCTaGGGCCCTGAACATCCCAGT +
Preference number: 2 (lower is better)
Translates to: VACTRPWSNLQYSRLCILAWSLS*GPEHPS
Trigger: ACTGGGATGTTCAGGGCCCCAGCTCAGGCTCCAAGC...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 90 bp GCCCATTTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTaGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCTGC +
Preference number: 2 (lower is better)
Translates to: AHFLHSQPEVCVGSH*PSQLVGCLLRGSSC
Trigger: GCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAAATGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR GCA 90 bp GGTTACCCCTTTGTCAGGTCACATACCTCCCTACCCCACAGTAGAAGGACCCTTTTGAGAGAGTGCCTCTaGCTCCCCAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: GYPFVRSHTSLPHSRRTLLRECL*LPSAGI
Trigger: AATCCCAGCACTGGGGAGGCAGAGGCACTCTCTCAA...AAGGGTCCTTCTACTGTGGGGTAGGGAGGTATGTGACCTGACAAAGGGGTAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 90 bp AGCGCAGATGAGTCAAAATGCCTGAAACCTCCTTCTCCAGCTCCATaGCATCAGCCCTGGCTAAAGACCTGCTTGGACAGAACAGCCCTC +
Preference number: 2 (lower is better)
Translates to: SADESKCLKPPSPAP*HQPWLKTCLDRTAL
Trigger: GAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCATCTGCGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp GTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCCTAGGATTAAAGACATaGGCCACCACCATCCAGCTT +
Preference number: 2 (lower is better)
Translates to: VGSHLPSQLVGCLLRGSSLGLKT*ATTIQL
Trigger: AAGCTGGATGGTGGTGGCTCATGTCTTTAATCCTAG...GCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp GGTTACCCCTTTGTCAGGTCACATACCTCCCTACCCCACAGTAGAAGGACCCTTCCTACCCCTGCCTCCTaGGTGCTAGGATTAAAGACA +
Preference number: 2 (lower is better)
Translates to: GYPFVRSHTSLPHSRRTLPTPAS*VLGLKT
Trigger: TGTCTTTAATCCTAGCACTCAGGAGGCAGGGGTAGG...AAGGGTCCTTCTACTGTGGGGTAGGGAGGTATGTGACCTGACAAAGGGGTAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR GCA 90 bp GTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCGGGATTACAGACATGTaGCACCACTCTCCCATGTTT +
Preference number: 2 (lower is better)
Translates to: VGSHLPSQLVGCLLRGSSGITDM*HHSPMF
Trigger: AAACATGGGAGAGTGGTGGCACATGTCTGTAATCCC...GCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CCA 90 bp TTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGTTAGAATTACAGGCCTaGGCCAACAGGCTTGGCTTG +
Preference number: 2 (lower is better)
Translates to: FLHSQPEVCVGSHLPSQLLELQA*ANRLGL
Trigger: CAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAA...CAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR GCA 90 bp TGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTGTGTGGGCTCGCATTTaGCCAGCCAGCTGGTTGGTT +
Preference number: 2 (lower is better)
Translates to: CILRSQACQLAVFTSCLLVWARI*PASWLV
Trigger: AACCAACCAGCTGGCTGGGCAAATGCGAGCCCACAC...AAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp ATACATACAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACCCTGCCTCTGTCTCCTaGGTGTTAGAATTACAGGCC +
Preference number: 2 (lower is better)
Translates to: IHTKRGAGVGKVVHPWLHPASVS*VLELQA
Trigger: GGCCTGTAATTCTAACACTCAGGAGACAGAGGCAGG...GTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTGTATGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp TTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGATCTGCAAATTTCACTaGACTTACCTGTCGGGTGAA +
Preference number: 2 (lower is better)
Translates to: FLHSQPEVCVGSHLPSQLICKFH*TYLSGE
Trigger: TTCACCCGACAGGTAAGTTCAGTGAAATTTGCAGAT...CAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR GCA 90 bp GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCGAAGGAGGTAAGGAATaGAGAGCTGTACAGCAATAC +
Preference number: 2 (lower is better)
Translates to: VACTRPWSNLQYSRLCILEGGKE*RAVQQY
Trigger: GTATTGCTGTACAGCTCTGCATTCCTTACCTCCTTC...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR GCA 90 bp CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTTGGAATTCATCCCCCTaGCTCTGTCTCCTGAGTGTT +
Preference number: 2 (lower is better)
Translates to: QREGLEWVKWYILGYTRIWNSSP*LCLLSV
Trigger: AACACTCAGGAGACAGAGGCAGGGGGATGAATTCCA...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR GCA 90 bp GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCCTCAGTGCCCACATCTaGTTCATTTCCATATCCAGA +
Preference number: 2 (lower is better)
Translates to: VACTRPWSNLQYSRLCILLSAHI*FISISR
Trigger: TCTGGATATGGAAATGAAGCAGATGTGGGCACTGAG...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp ATCACACCTCTCCACTGTCCTACACCTCAATTAGCAGAGCATCCAACTAGGATGACACAAATTGTTGTCTaGCTGTGCCAGGAGAGAACA +
Preference number: 2 (lower is better)
Translates to: ITPLHCPTPQLAEHPTRMTQIVV*LCQERT
Trigger: TGTTCTCTCCTGGCACAGTCAGACAACAATTTGTGT...CATCCTAGTTGGATGCTCTGCTAATTGAGGTGTAGGACAGTGGAGAGGTGTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp TGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTATGAGTCAAAATGCCTaGAACCTCCTTCTCCAGCTC +
Preference number: 2 (lower is better)
Translates to: CILRSQACQLAVFTSCLLMSQNA*NLLLQL
Trigger: GAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCAT...AAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR GCA 90 bp CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTTCTCTCCCTCCTAAATaGTGGGATTACAGACATGTG +
Preference number: 2 (lower is better)
Translates to: QREGLEWVKWYILGYTRISLPPK*WDYRHV
Trigger: CACATGTCTGTAATCCCAGCATTTAGGAGGGAGAGA...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CCA 90 bp GTACTCCAGACTCTGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACTTGTATAGCCCAGGCTaGCCTCAAACTATAAAGCTG +
Preference number: 2 (lower is better)
Translates to: VLQTLYSQKPGLSTCSLYLYSPG*PQTIKL
Trigger: CAGCTTTATAGTTTGAGGCCAGCCTGGGCTATACAA...GTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACAGAGTCTGGAGTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCTTCTTTGATTCCCAATaGACACTGATTTCAAGTGAC +
Preference number: 2 (lower is better)
Translates to: VACTRPWSNLQYSRLCILFFDSQ*TLISSD
Trigger: GTCACTTGAAATCAGTGTTCATTGGGAATCAAAGAA...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 90 bp AACAGAACACAGGTGATAGGAAGGGAGATAGACAAAGAAATGCCCTaGTGTCTCAGGGTGGTGGCTCAAACCACAAATGAAAAGAATCTC +
Preference number: 2 (lower is better)
Translates to: NRTQVIGREIDKEMP*CLRVVAQTTNEKNL
Trigger: GAGATTCTTTTCATTTGTGGTTTGAGCCACCACCCTGAGACACAAGGGCATTTCTTTGTCTATCTCCCTTCCTATCACCTGTGTTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTTCTCTATGTTCTCTATaGCACCAGTACTACTCACAA +
Preference number: 2 (lower is better)
Translates to: QREGLEWVKWYILGYTRISLCSL*HQYYSQ
Trigger: TTGTGAGTAGTACTGGTGTCATAGAGAACATAGAGA...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR TCA 90 bp CAGAACAGTTTTCACAACCTCACACATCCTCCACACAAATTGTTGTCTGACTGTGGCTCAAACCACAAATaGAAAGAATCTCTGTGTGCA +
Preference number: 2 (lower is better)
Translates to: QNSFHNLTHPPHKLLSDCGSNHK*KESLCA
Trigger: TGCACACAGAGATTCTTTTCATTTGTGGTTTGAGCC...ACAGTCAGACAACAATTTGTGTGGAGGATGTGTGAGGTTGTGAAAACTGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR GCA 72 bp AGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCTaGATAGCCCTGGCTGGACTGCACCAGTCTGGCCTC +
Preference number: 3 (lower is better)
Translates to: SQLVGCLLRGSS*IALAGLHQSGL
Trigger: GAGGCCAGACTGGTGCAGTCCAGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 72 bp GGGCCCATTTCCTTCATTCTCAGCCTGAAGTGTGTGTaGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCC +
Preference number: 3 (lower is better)
Translates to: GPISFILSLKCV*ARICPASWLVA
Trigger: GGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAAATGGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR GCA 72 bp TGTGTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTaGCTTTTGAGAGGATCTAGCTGCATAGCCCTGGCT +
Preference number: 3 (lower is better)
Translates to: CVGSHLPSQLVG*LLRGSSCIALA
Trigger: AGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 72 bp CTGAAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTaGCTAAAGACCTGCTTGGACAGAACAGCCCTCTGC +
Preference number: 3 (lower is better)
Translates to: LKPPSPAPLHQP*LKTCLDRTALC
Trigger: GCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 72 bp GGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTaGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGTG +
Preference number: 3 (lower is better)
Translates to: GLSTCSLYLLSS*QATSTLKVPSV
Trigger: CACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CAA 90 bp TTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGTCCGGTTTTGGTTTTTaGAGAGAGTGCCTCTGCCTC +
Preference number: 3 (lower is better)
Translates to: FLHSQPEVCVGSHLPSQLSGFGF*RECLCL
Trigger: GAGGCAGAGGCACTCTCTCAAAAAACCAAAACCGGA...CAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 72 bp CTAGCCCTGGTCTCATCGAGAGAATATACCCTGCTTTaGTGCCTCCCTGCATCTCTAAAGGAACCGGCAAGC +
Preference number: 3 (lower is better)
Translates to: LALVSSREYTLL*CLPASLKEPAS
Trigger: GCTTGCCGGTTCCTTTAGAGATGCAGGGAGGCATCAAAGCAGGGTATATTCTCTCGATGAGACCAGGGCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CAA 90 bp GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCCCTGGGCCAACAGGCTaGGCTTGGCATCTTTATTTC +
Preference number: 3 (lower is better)
Translates to: VACTRPWSNLQYSRLCILPGPTG*AWHLYF
Trigger: GAAATAAAGATGCCAAGCCAAGCCTGTTGGCCCAGG...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CAA 90 bp TGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTCTCAGGTTATCAGCCTaGTGGCTCCAGCCCAACTGG +
Preference number: 3 (lower is better)
Translates to: CILRSQACQLAVFTSCLLLRLSA*WLQPNW
Trigger: CCAGTTGGGCTGGAGCCACAAGGCTGATAACCTGAG...AAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CAA 90 bp CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTGCCAGGCCTGTCAACTaGCAGTCTTTACCTCCTGTC +
Preference number: 3 (lower is better)
Translates to: QREGLEWVKWYILGYTRIARPVN*QSLPPV
Trigger: GACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGC...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CAA 90 bp GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCAGAATATACCCTGCTTaGATGCCTCCCTGCATCTCT +
Preference number: 3 (lower is better)
Translates to: VACTRPWSNLQYSRLCILRIYPA*MPPCIS
Trigger: AGAGATGCAGGGAGGCATCAAAGCAGGGTATATTCT...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR GCA 72 bp AAGGCACTGAGCCTAACTAGCGCAGATGAGTCAAAATaGCTGAAACCTCCTTCTCCAGCTCCATTGCATCAG +
Preference number: 3 (lower is better)
Translates to: KALSLTSADESK*LKPPSPAPLHQ
Trigger: CTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCATCTGCGCTAGTTAGGCTCAGTGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 72 bp CTGACGGTCCCAGGCCTACAGAACACATGGGTTTTCTaGTCTGATGGTAGCTACAACGTCTCACAATTTTCT +
Preference number: 3 (lower is better)
Translates to: LTVPGLQNTWVF*SDGSYNVSQFS
Trigger: AGAAAATTGTGAGACGTTGTAGCTACCATCAGATCAGAAAACCCATGTGTTCTGTAGGCCTGGGACCGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CAA 90 bp TCTTTACCTCCTGTCTTCTTGGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGTACCCAGCTGTTTGATTaGTTTTGTTTTGACAAGGTT +
Preference number: 3 (lower is better)
Translates to: SLPPVFLASHQYPKGALSTQLFD*FCFDKV
Trigger: AACCTTGTCAAAACAAAACAAATCAAACAGCTGGGT...ACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 72 bp GGGATTACAGACATGTGCCACCACTCTCCCATGTTTTaGAGTTACCAAATGTCAACTGTACTGAGAATCTGC +
Preference number: 3 (lower is better)
Translates to: GITDMCHHSPMF*SYQMSTVLRIC
Trigger: GCAGATTCTCAGTACAGTTGACATTTGGTAACTCCAAAACATGGGAGAGTGGTGGCACATGTCTGTAATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR TCA 72 bp CAAATGTCAACTGTACTGAGAATCTGCAAATTTCACTaGACTTACCTGTCGGGTGAAGAGTCGGTTACCCCT +
Preference number: 3 (lower is better)
Translates to: QMSTVLRICKFH*TYLSGEESVTP
Trigger: AGGGGTAACCGACTCTTCACCCGACAGGTAAGTTCAGTGAAATTTGCAGATTCTCAGTACAGTTGACATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR-3UTR CAA 90 bp GTACTCCAGACTCTGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCGTCTCACAATTTTCTaGGTTTGTTGTTGGTTTTTG +
Preference number: 3 (lower is better)
Translates to: VLQTLYSQKPGLSTCSLYRLTIF*VCCWFL
Trigger: CAAAAACCAACAACAAACCAAGAAAATTGTGAGACG...GTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACAGAGTCTGGAGTAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CCA 72 bp GTTTTTAAGGAATACATACAAAGAGAGGGGCTGGAGTaGGTAAAGTGGTACATCCTTGGCTACACTAGAATT +
Preference number: 3 (lower is better)
Translates to: VFKEYIQREGLE*VKWYILGYTRI
Trigger: AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTGTATGTATTCCTTAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR GCA 72 bp ACTCAGATTATCCAGAAGCCTGAAGGAGGTAAGGAATaGAGAGCTGTACAGCAATACAAAGTACAGATTAAA +
Preference number: 3 (lower is better)
Translates to: TQIIQKPEGGKE*RAVQQYKVQIK
Trigger: TTTAATCTGTACTTTGTATTGCTGTACAGCTCTGCATTCCTTACCTCCTTCAGGCTTCTGGATAATCTGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp GGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTaGAGAGGATCTAGCTGCATAGCCCTGGCTGGACTG +
Preference number: 4 (lower is better)
Translates to: GSHLPSQLVGCL*RGSSCIALAGL
Trigger: CAGTCCAGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp CCAGCTCCATTGCATCAGCCCTGGCTAAAGACCTGCTaGGACAGAACAGCCCTCTGCTCACTGGCCATTAGG +
Preference number: 4 (lower is better)
Translates to: PAPLHQPWLKTC*DRTALCSLAIR
Trigger: CCTAATGGCCAGTGAGCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS-3UTR GCA 90 bp CTCCTGAGTGTTAGAATTACAGGCCTGGGCCAACAGGCTTGGCTTGGCATCTTTCCCAGGCTTAGAGTCTaGGGGGTTGGTCTCTCCAAG +
Preference number: 4 (lower is better)
Translates to: LLSVRITGLGQQAWLGIFPRLRV*GVGLSK
Trigger: CTTGGAGAGACCAACCCCGCAGACTCTAAGCCTGGG...AAAGATGCCAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAACACTCAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS-3UTR GCA 90 bp GTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCTCCTGCCAACTTGGATaGAGAAGTCTCCTCGTATGG +
Preference number: 4 (lower is better)
Translates to: VGSHLPSQLVGCLLRGSSSCQLG*RSLLVW
Trigger: CCATACGAGGAGACTTCTGCATCCAAGTTGGCAGGA...GCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp CTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTaGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: LHSQPEVCVGSH*PSQLVGCLLRG
Trigger: TCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp AGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTaGGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGT +
Preference number: 4 (lower is better)
Translates to: RPVNLQSLPPVF*ASHQYPKGALS
Trigger: ACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS-3UTR TCA 90 bp GGTTACCCCTTTGTCAGGTCACATACCTCCCTACCCCACAGTAGAAGGACCCTTCTTGAGAAGGTCCTCTaGAGCCTGCAGAAACTTCAG +
Preference number: 4 (lower is better)
Translates to: GYPFVRSHTSLPHSRRTLLEKVL*SLQKLQ
Trigger: CTGAAGTTTCTGCAGGCTTCAGAGGACCTTCTCAAG...AAGGGTCCTTCTACTGTGGGGTAGGGAGGTATGTGACCTGACAAAGGGGTAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS-3UTR TCA 90 bp CTACTCAGGTGGGTAACAGCCCATCACACCTCTCCACTGTCCTACACCTCAATTCAGTGTAGTGCTCCTTaGGAAGGTCCTCTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: LLRWVTAHHTSPLSYTSIQCSAP*EGPLKP
Trigger: AGGCTTCAGAGGACCTTCTCAAGGAGCACTACACTG...AATTGAGGTGTAGGACAGTGGAGAGGTGTGATGGGCTGTTACCCACCTGAGTAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS-3UTR TCA 90 bp GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCAGCAACCACTGGTCCTaGGTGCATGTATTTCACCAG +
Preference number: 4 (lower is better)
Translates to: VACTRPWSNLQYSRLCILSNHWS*VHVFHQ
Trigger: CTGGTGAAATACATGCACTCAGGACCAGTGGTTGCT...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp GAGTCAAAATGCCTGAAACCTCCTTCTCCAGCTCCATaGCATCAGCCCTGGCTAAAGACCTGCTTGGACAGA +
Preference number: 4 (lower is better)
Translates to: ESKCLKPPSPAP*HQPWLKTCLDR
Trigger: TCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS-3UTR GCA 90 bp TCTTTACCTCCTGTCTTCTTGGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGTAGGTCCTCTGAAGCCTaGAGAAACTTCAGACCAACA +
Preference number: 4 (lower is better)
Translates to: SLPPVFLASHQYPKGALSRSSEA*RNFRPT
Trigger: TGTTGGTCTGAAGTTTCTGCAGGCTTCAGAGGACCT...ACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS-3UTR GCA 90 bp ATCACACCTCTCCACTGTCCTACACCTCAATTAGCAGAGCATCCAACTAGGATGACCACTGGTCCTGAGTaGATGTATTTCACCAGGCCA +
Preference number: 4 (lower is better)
Translates to: ITPLHCPTPQLAEHPTRMTTGPE*MYFTRP
Trigger: TGGCCTGGTGAAATACATGCACTCAGGACCAGTGGT...CATCCTAGTTGGATGCTCTGCTAATTGAGGTGTAGGACAGTGGAGAGGTGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp CAGGTGATAGGAAGGGAGATAGACAAAGAAATGCCCTaGTGTCTCAGGGTGGTGGCTCAAACCACAAATGAA +
Preference number: 4 (lower is better)
Translates to: QVIGREIDKEMP*CLRVVAQTTNE
Trigger: TTCATTTGTGGTTTGAGCCACCACCCTGAGACACAAGGGCATTTCTTTGTCTATCTCCCTTCCTATCACCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp AGTTTTCACAACCTCACACATCCTCCACACAAATTGTaGTCTGACTGTGCCAGGAGAGAACAGAACACAGGT +
Preference number: 4 (lower is better)
Translates to: SFHNLTHPPHKL*SDCARREQNTG
Trigger: ACCTGTGTTCTGTTCTCTCCTGGCACAGTCAGACAACAATTTGTGTGGAGGATGTGTGAGGTTGTGAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp AACAGTTTTCACAACCTCACACATCCTCCACACAAATaGTTGTCTGACTGTGCCAGGAGAGAACAGAACACA +
Preference number: 4 (lower is better)
Translates to: NSFHNLTHPPHK*LSDCARREQNT
Trigger: TGTGTTCTGTTCTCTCCTGGCACAGTCAGACAACAATTTGTGTGGAGGATGTGTGAGGTTGTGAAAACTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
3UTR CAA 72 bp TGGGATTACAGACATGTGCCACCACTCTCCCATGTTTaGGAGTTACCAAATGTCAACTGTACTGAGAATCTG +
Preference number: 4 (lower is better)
Translates to: WDYRHVPPLSHV*ELPNVNCTENL
Trigger: CAGATTCTCAGTACAGTTGACATTTGGTAACTCCAAAACATGGGAGAGTGGTGGCACATGTCTGTAATCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS TCA 90 bp ATCCAGTTCTGCGCACAGCTCTTGTACTCCACCAGCTCCTCAGGCTaGAACCACAAGCTGATCTCCTTCTCTGCGCTCTTTACAGAATCG +
Preference number: 5 (lower is better)
Translates to: IQFCAQLLYSTSSSG*NHKLISFSALFTES
Trigger: CGATTCTGTAAAGAGCGCAGAGAAGGAGATCAGCTTGTGGTTTCAGCCTGAGGAGCTGGTGGAGTACAAGAGCTGTGCGCAGAACTGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS TCA 72 bp TGCGCACAGCTCTTGTACTCCACCAGCTCCTCAGGCTaGAACCACAAGCTGATCTCCTTCTCTGCGCTCTTT +
Preference number: 6 (lower is better)
Translates to: CAQLLYSTSSSG*NHKLISFSALF
Trigger: AAAGAGCGCAGAGAAGGAGATCAGCTTGTGGTTTCAGCCTGAGGAGCTGGTGGAGTACAAGAGCTGTGCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135884.8
CDS TCA 72 bp CCTCTCTCGGTAGAAAACCATAGCAACCACTGGTCCTaGGTGCATGTATTTCACCAGGCCAGTAAAGAAGGG +
Preference number: 6 (lower is better)
Translates to: PLSVENHSNHWS*VHVFHQASKEG
Trigger: CCCTTCTTTACTGGCCTGGTGAAATACATGCACTCAGGACCAGTGGTTGCTATGGTTTTCTACCGAGAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107844.3