Pregenerated sensors for NME1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037601Ensembl transcript IDs: ENSMUST00000107844.3, ENSMUST00000135884.8
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTaGCTTTTGAGAGGATCTAGCTGCATAGCCCTGGCTGGACTGCAC | + |
Preference number: 1 (lower is better) Translates to: PEVCVGSHLPSQLVG*LLRGSSCIALAGLH Trigger: GTGCAGTCCAGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 90 bp | TGTAGTCTAGGCTGGCCTGGAATTCATCCCCCTGCCTCTGTCTCCTaGGTGTTAGAATTACAGGCCTGGGCCAACAGGCTTGGCTTGGCA | + |
Preference number: 1 (lower is better) Translates to: CSLGWPGIHPPASVS*VLELQAWANRLGLA Trigger: TGCCAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAACACTCAGGAGACAGAGGCAGGGGGATGAATTCCAGGCCAGCCTAGACTACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 90 bp | CAGAGCATCCAACTAGGATGCACCGACTGCCATTTGCCCTCACTCTaGGCCCATTTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCG | + |
Preference number: 1 (lower is better) Translates to: QSIQLGCTDCHLPSL*AHFLHSQPEVCVGS Trigger: CGAGCCCACACACACTTCAGGCTGAGAATGAAGGAAATGGGCCCAGAGTGAGGGCAAATGGCAGTCGGTGCATCCTAGTTGGATGCTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR GCA 90 bp | AAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTGGCTAAAGACCTaGTTGGACAGAACAGCCCTCTGCTCACTGGCCATTAGGATGAGC | + |
Preference number: 1 (lower is better) Translates to: KPPSPAPLHQPWLKT*LDRTALCSLAIRMS Trigger: GCTCATCCTAATGGCCAGTGAGCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 90 bp | TCAAAATGCCTGAAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTaGCTAAAGACCTGCTTGGACAGAACAGCCCTCTGCTCACTGGCC | + |
Preference number: 1 (lower is better) Translates to: SKCLKPPSPAPLHQP*LKTCLDRTALCSLA Trigger: GGCCAGTGAGCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR GCA 90 bp | GCATTGCCCAAGGCACTGAGCCTAACTAGCGCAGATGAGTCAAAATaGCTGAAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTGGCTA | + |
Preference number: 1 (lower is better) Translates to: ALPKALSLTSADESK*LKPPSPAPLHQPWL Trigger: TAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCATCTGCGCTAGTTAGGCTCAGTGCCTTGGGCAATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 90 bp | CAAGTGACTCTAGCCCTGGTCTCATCGAGAGAATATACCCTGCTTTaGTGCCTCCCTGCATCTCTAAAGGAACCGGCAAGCTCTCTATGT | + |
Preference number: 1 (lower is better) Translates to: QVTLALVSSREYTLL*CLPASLKEPASSLC Trigger: ACATAGAGAGCTTGCCGGTTCCTTTAGAGATGCAGGGAGGCATCAAAGCAGGGTATATTCTCTCGATGAGACCAGGGCTAGAGTCACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 90 bp | GGACACCAGCTGACGGTCCCAGGCCTACAGAACACATGGGTTTTCTaGTCTGATGGTAGCTACAACGTCTCACAATTTTCTTGGTTTGTT | + |
Preference number: 1 (lower is better) Translates to: GHQLTVPGLQNTWVF*SDGSYNVSQFSWFV Trigger: AACAAACCAAGAAAATTGTGAGACGTTGTAGCTACCATCAGATCAGAAAACCCATGTGTTCTGTAGGCCTGGGACCGTCAGCTGGTGTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 90 bp | CTCTGTCTCCTGAGTGTTAGAATTACAGGCCTGGGCCAACAGGCTTaGCTTGGCATCTTTATTTCTAATGAATTCTCTGTTCCCAGAACA | + |
Preference number: 1 (lower is better) Translates to: LCLLSVRITGLGQQA*LGIFISNEFSVPRT Trigger: TGTTCTGGGAACAGAGAATTCATTAGAAATAAAGATGCCAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAACACTCAGGAGACAGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 90 bp | GCCACCACTCTCCCATGTTTTGGAGTTACCAAATGTCAACTGTACTaGGAATCTGCAAATTTCACTGAACTTACCTGTCGGGTGAAGAGT | + |
Preference number: 1 (lower is better) Translates to: ATTLPCFGVTKCQLY*ESANFTELTCRVKS Trigger: ACTCTTCACCCGACAGGTAAGTTCAGTGAAATTTGCAGATTCTCAGTACAGTTGACATTTGGTAACTCCAAAACATGGGAGAGTGGTGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 90 bp | CAAAGAAATGCCCTTGTGTCTCAGGGTGGTGGCTCAAACCACAAATaGAAAGAATCTCTGTGTGCACATGAGGCCAATATAAGTAATTTG | + |
Preference number: 1 (lower is better) Translates to: QRNALVSQGGGSNHK*KESLCAHEANISNL Trigger: CAAATTACTTATATTGGCCTCATGTGCACACAGAGATTCTTTTCATTTGTGGTTTGAGCCACCACCCTGAGACACAAGGGCATTTCTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CCA 90 bp | GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCGCTTGGAGCCTGAGCTaGGGCCCTGAACATCCCAGT | + |
Preference number: 2 (lower is better) Translates to: VACTRPWSNLQYSRLCILAWSLS*GPEHPS Trigger: ACTGGGATGTTCAGGGCCCCAGCTCAGGCTCCAAGC...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 90 bp | GCCCATTTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTaGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCTGC | + |
Preference number: 2 (lower is better) Translates to: AHFLHSQPEVCVGSH*PSQLVGCLLRGSSC Trigger: GCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAAATGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR GCA 90 bp | GGTTACCCCTTTGTCAGGTCACATACCTCCCTACCCCACAGTAGAAGGACCCTTTTGAGAGAGTGCCTCTaGCTCCCCAGTGCTGGGATT | + |
Preference number: 2 (lower is better) Translates to: GYPFVRSHTSLPHSRRTLLRECL*LPSAGI Trigger: AATCCCAGCACTGGGGAGGCAGAGGCACTCTCTCAA...AAGGGTCCTTCTACTGTGGGGTAGGGAGGTATGTGACCTGACAAAGGGGTAACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 90 bp | AGCGCAGATGAGTCAAAATGCCTGAAACCTCCTTCTCCAGCTCCATaGCATCAGCCCTGGCTAAAGACCTGCTTGGACAGAACAGCCCTC | + |
Preference number: 2 (lower is better) Translates to: SADESKCLKPPSPAP*HQPWLKTCLDRTAL Trigger: GAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCATCTGCGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | GTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCCTAGGATTAAAGACATaGGCCACCACCATCCAGCTT | + |
Preference number: 2 (lower is better) Translates to: VGSHLPSQLVGCLLRGSSLGLKT*ATTIQL Trigger: AAGCTGGATGGTGGTGGCTCATGTCTTTAATCCTAG...GCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | GGTTACCCCTTTGTCAGGTCACATACCTCCCTACCCCACAGTAGAAGGACCCTTCCTACCCCTGCCTCCTaGGTGCTAGGATTAAAGACA | + |
Preference number: 2 (lower is better) Translates to: GYPFVRSHTSLPHSRRTLPTPAS*VLGLKT Trigger: TGTCTTTAATCCTAGCACTCAGGAGGCAGGGGTAGG...AAGGGTCCTTCTACTGTGGGGTAGGGAGGTATGTGACCTGACAAAGGGGTAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR GCA 90 bp | GTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCGGGATTACAGACATGTaGCACCACTCTCCCATGTTT | + |
Preference number: 2 (lower is better) Translates to: VGSHLPSQLVGCLLRGSSGITDM*HHSPMF Trigger: AAACATGGGAGAGTGGTGGCACATGTCTGTAATCCC...GCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CCA 90 bp | TTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGTTAGAATTACAGGCCTaGGCCAACAGGCTTGGCTTG | + |
Preference number: 2 (lower is better) Translates to: FLHSQPEVCVGSHLPSQLLELQA*ANRLGL Trigger: CAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAA...CAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR GCA 90 bp | TGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTGTGTGGGCTCGCATTTaGCCAGCCAGCTGGTTGGTT | + |
Preference number: 2 (lower is better) Translates to: CILRSQACQLAVFTSCLLVWARI*PASWLV Trigger: AACCAACCAGCTGGCTGGGCAAATGCGAGCCCACAC...AAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | ATACATACAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACCCTGCCTCTGTCTCCTaGGTGTTAGAATTACAGGCC | + |
Preference number: 2 (lower is better) Translates to: IHTKRGAGVGKVVHPWLHPASVS*VLELQA Trigger: GGCCTGTAATTCTAACACTCAGGAGACAGAGGCAGG...GTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTGTATGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | TTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGATCTGCAAATTTCACTaGACTTACCTGTCGGGTGAA | + |
Preference number: 2 (lower is better) Translates to: FLHSQPEVCVGSHLPSQLICKFH*TYLSGE Trigger: TTCACCCGACAGGTAAGTTCAGTGAAATTTGCAGAT...CAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR GCA 90 bp | GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCGAAGGAGGTAAGGAATaGAGAGCTGTACAGCAATAC | + |
Preference number: 2 (lower is better) Translates to: VACTRPWSNLQYSRLCILEGGKE*RAVQQY Trigger: GTATTGCTGTACAGCTCTGCATTCCTTACCTCCTTC...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR GCA 90 bp | CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTTGGAATTCATCCCCCTaGCTCTGTCTCCTGAGTGTT | + |
Preference number: 2 (lower is better) Translates to: QREGLEWVKWYILGYTRIWNSSP*LCLLSV Trigger: AACACTCAGGAGACAGAGGCAGGGGGATGAATTCCA...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR GCA 90 bp | GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCCTCAGTGCCCACATCTaGTTCATTTCCATATCCAGA | + |
Preference number: 2 (lower is better) Translates to: VACTRPWSNLQYSRLCILLSAHI*FISISR Trigger: TCTGGATATGGAAATGAAGCAGATGTGGGCACTGAG...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | ATCACACCTCTCCACTGTCCTACACCTCAATTAGCAGAGCATCCAACTAGGATGACACAAATTGTTGTCTaGCTGTGCCAGGAGAGAACA | + |
Preference number: 2 (lower is better) Translates to: ITPLHCPTPQLAEHPTRMTQIVV*LCQERT Trigger: TGTTCTCTCCTGGCACAGTCAGACAACAATTTGTGT...CATCCTAGTTGGATGCTCTGCTAATTGAGGTGTAGGACAGTGGAGAGGTGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | TGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTATGAGTCAAAATGCCTaGAACCTCCTTCTCCAGCTC | + |
Preference number: 2 (lower is better) Translates to: CILRSQACQLAVFTSCLLMSQNA*NLLLQL Trigger: GAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCAT...AAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR GCA 90 bp | CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTTCTCTCCCTCCTAAATaGTGGGATTACAGACATGTG | + |
Preference number: 2 (lower is better) Translates to: QREGLEWVKWYILGYTRISLPPK*WDYRHV Trigger: CACATGTCTGTAATCCCAGCATTTAGGAGGGAGAGA...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CCA 90 bp | GTACTCCAGACTCTGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACTTGTATAGCCCAGGCTaGCCTCAAACTATAAAGCTG | + |
Preference number: 2 (lower is better) Translates to: VLQTLYSQKPGLSTCSLYLYSPG*PQTIKL Trigger: CAGCTTTATAGTTTGAGGCCAGCCTGGGCTATACAA...GTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACAGAGTCTGGAGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCTTCTTTGATTCCCAATaGACACTGATTTCAAGTGAC | + |
Preference number: 2 (lower is better) Translates to: VACTRPWSNLQYSRLCILFFDSQ*TLISSD Trigger: GTCACTTGAAATCAGTGTTCATTGGGAATCAAAGAA...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 90 bp | AACAGAACACAGGTGATAGGAAGGGAGATAGACAAAGAAATGCCCTaGTGTCTCAGGGTGGTGGCTCAAACCACAAATGAAAAGAATCTC | + |
Preference number: 2 (lower is better) Translates to: NRTQVIGREIDKEMP*CLRVVAQTTNEKNL Trigger: GAGATTCTTTTCATTTGTGGTTTGAGCCACCACCCTGAGACACAAGGGCATTTCTTTGTCTATCTCCCTTCCTATCACCTGTGTTCTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTTCTCTATGTTCTCTATaGCACCAGTACTACTCACAA | + |
Preference number: 2 (lower is better) Translates to: QREGLEWVKWYILGYTRISLCSL*HQYYSQ Trigger: TTGTGAGTAGTACTGGTGTCATAGAGAACATAGAGA...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR TCA 90 bp | CAGAACAGTTTTCACAACCTCACACATCCTCCACACAAATTGTTGTCTGACTGTGGCTCAAACCACAAATaGAAAGAATCTCTGTGTGCA | + |
Preference number: 2 (lower is better) Translates to: QNSFHNLTHPPHKLLSDCGSNHK*KESLCA Trigger: TGCACACAGAGATTCTTTTCATTTGTGGTTTGAGCC...ACAGTCAGACAACAATTTGTGTGGAGGATGTGTGAGGTTGTGAAAACTGTTCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR GCA 72 bp | AGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCTaGATAGCCCTGGCTGGACTGCACCAGTCTGGCCTC | + |
Preference number: 3 (lower is better) Translates to: SQLVGCLLRGSS*IALAGLHQSGL Trigger: GAGGCCAGACTGGTGCAGTCCAGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 72 bp | GGGCCCATTTCCTTCATTCTCAGCCTGAAGTGTGTGTaGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCC | + |
Preference number: 3 (lower is better) Translates to: GPISFILSLKCV*ARICPASWLVA Trigger: GGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAAATGGGCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR GCA 72 bp | TGTGTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTaGCTTTTGAGAGGATCTAGCTGCATAGCCCTGGCT | + |
Preference number: 3 (lower is better) Translates to: CVGSHLPSQLVG*LLRGSSCIALA Trigger: AGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 72 bp | CTGAAACCTCCTTCTCCAGCTCCATTGCATCAGCCCTaGCTAAAGACCTGCTTGGACAGAACAGCCCTCTGC | + |
Preference number: 3 (lower is better) Translates to: LKPPSPAPLHQP*LKTCLDRTALC Trigger: GCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 72 bp | GGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTaGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGTG | + |
Preference number: 3 (lower is better) Translates to: GLSTCSLYLLSS*QATSTLKVPSV Trigger: CACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CAA 90 bp | TTCCTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTTGCCCAGCCAGCTGTCCGGTTTTGGTTTTTaGAGAGAGTGCCTCTGCCTC | + |
Preference number: 3 (lower is better) Translates to: FLHSQPEVCVGSHLPSQLSGFGF*RECLCL Trigger: GAGGCAGAGGCACTCTCTCAAAAAACCAAAACCGGA...CAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 72 bp | CTAGCCCTGGTCTCATCGAGAGAATATACCCTGCTTTaGTGCCTCCCTGCATCTCTAAAGGAACCGGCAAGC | + |
Preference number: 3 (lower is better) Translates to: LALVSSREYTLL*CLPASLKEPAS Trigger: GCTTGCCGGTTCCTTTAGAGATGCAGGGAGGCATCAAAGCAGGGTATATTCTCTCGATGAGACCAGGGCTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CAA 90 bp | GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCCCTGGGCCAACAGGCTaGGCTTGGCATCTTTATTTC | + |
Preference number: 3 (lower is better) Translates to: VACTRPWSNLQYSRLCILPGPTG*AWHLYF Trigger: GAAATAAAGATGCCAAGCCAAGCCTGTTGGCCCAGG...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CAA 90 bp | TGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTTCTCAGGTTATCAGCCTaGTGGCTCCAGCCCAACTGG | + |
Preference number: 3 (lower is better) Translates to: CILRSQACQLAVFTSCLLLRLSA*WLQPNW Trigger: CCAGTTGGGCTGGAGCCACAAGGCTGATAACCTGAG...AAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CAA 90 bp | CAAAGAGAGGGGCTGGAGTGGGTAAAGTGGTACATCCTTGGCTACACTAGAATTGCCAGGCCTGTCAACTaGCAGTCTTTACCTCCTGTC | + |
Preference number: 3 (lower is better) Translates to: QREGLEWVKWYILGYTRIARPVN*QSLPPV Trigger: GACAGGAGGTAAAGACTGCAAGTTGACAGGCCTGGC...AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CAA 90 bp | GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCAGAATATACCCTGCTTaGATGCCTCCCTGCATCTCT | + |
Preference number: 3 (lower is better) Translates to: VACTRPWSNLQYSRLCILRIYPA*MPPCIS Trigger: AGAGATGCAGGGAGGCATCAAAGCAGGGTATATTCT...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR GCA 72 bp | AAGGCACTGAGCCTAACTAGCGCAGATGAGTCAAAATaGCTGAAACCTCCTTCTCCAGCTCCATTGCATCAG | + |
Preference number: 3 (lower is better) Translates to: KALSLTSADESK*LKPPSPAPLHQ Trigger: CTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTCATCTGCGCTAGTTAGGCTCAGTGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 72 bp | CTGACGGTCCCAGGCCTACAGAACACATGGGTTTTCTaGTCTGATGGTAGCTACAACGTCTCACAATTTTCT | + |
Preference number: 3 (lower is better) Translates to: LTVPGLQNTWVF*SDGSYNVSQFS Trigger: AGAAAATTGTGAGACGTTGTAGCTACCATCAGATCAGAAAACCCATGTGTTCTGTAGGCCTGGGACCGTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CAA 90 bp | TCTTTACCTCCTGTCTTCTTGGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGTACCCAGCTGTTTGATTaGTTTTGTTTTGACAAGGTT | + |
Preference number: 3 (lower is better) Translates to: SLPPVFLASHQYPKGALSTQLFD*FCFDKV Trigger: AACCTTGTCAAAACAAAACAAATCAAACAGCTGGGT...ACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 72 bp | GGGATTACAGACATGTGCCACCACTCTCCCATGTTTTaGAGTTACCAAATGTCAACTGTACTGAGAATCTGC | + |
Preference number: 3 (lower is better) Translates to: GITDMCHHSPMF*SYQMSTVLRIC Trigger: GCAGATTCTCAGTACAGTTGACATTTGGTAACTCCAAAACATGGGAGAGTGGTGGCACATGTCTGTAATCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR TCA 72 bp | CAAATGTCAACTGTACTGAGAATCTGCAAATTTCACTaGACTTACCTGTCGGGTGAAGAGTCGGTTACCCCT | + |
Preference number: 3 (lower is better) Translates to: QMSTVLRICKFH*TYLSGEESVTP Trigger: AGGGGTAACCGACTCTTCACCCGACAGGTAAGTTCAGTGAAATTTGCAGATTCTCAGTACAGTTGACATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR-3UTR CAA 90 bp | GTACTCCAGACTCTGTATTCTCAGAAGCCAGGCCTGTCAACTTGCAGTCTTTACCGTCTCACAATTTTCTaGGTTTGTTGTTGGTTTTTG | + |
Preference number: 3 (lower is better) Translates to: VLQTLYSQKPGLSTCSLYRLTIF*VCCWFL Trigger: CAAAAACCAACAACAAACCAAGAAAATTGTGAGACG...GTAAAGACTGCAAGTTGACAGGCCTGGCTTCTGAGAATACAGAGTCTGGAGTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CCA 72 bp | GTTTTTAAGGAATACATACAAAGAGAGGGGCTGGAGTaGGTAAAGTGGTACATCCTTGGCTACACTAGAATT | + |
Preference number: 3 (lower is better) Translates to: VFKEYIQREGLE*VKWYILGYTRI Trigger: AATTCTAGTGTAGCCAAGGATGTACCACTTTACCCACTCCAGCCCCTCTCTTTGTATGTATTCCTTAAAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR GCA 72 bp | ACTCAGATTATCCAGAAGCCTGAAGGAGGTAAGGAATaGAGAGCTGTACAGCAATACAAAGTACAGATTAAA | + |
Preference number: 3 (lower is better) Translates to: TQIIQKPEGGKE*RAVQQYKVQIK Trigger: TTTAATCTGTACTTTGTATTGCTGTACAGCTCTGCATTCCTTACCTCCTTCAGGCTTCTGGATAATCTGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | GGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTaGAGAGGATCTAGCTGCATAGCCCTGGCTGGACTG | + |
Preference number: 4 (lower is better) Translates to: GSHLPSQLVGCL*RGSSCIALAGL Trigger: CAGTCCAGCCAGGGCTATGCAGCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | CCAGCTCCATTGCATCAGCCCTGGCTAAAGACCTGCTaGGACAGAACAGCCCTCTGCTCACTGGCCATTAGG | + |
Preference number: 4 (lower is better) Translates to: PAPLHQPWLKTC*DRTALCSLAIR Trigger: CCTAATGGCCAGTGAGCAGAGGGCTGTTCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS-3UTR GCA 90 bp | CTCCTGAGTGTTAGAATTACAGGCCTGGGCCAACAGGCTTGGCTTGGCATCTTTCCCAGGCTTAGAGTCTaGGGGGTTGGTCTCTCCAAG | + |
Preference number: 4 (lower is better) Translates to: LLSVRITGLGQQAWLGIFPRLRV*GVGLSK Trigger: CTTGGAGAGACCAACCCCGCAGACTCTAAGCCTGGG...AAAGATGCCAAGCCAAGCCTGTTGGCCCAGGCCTGTAATTCTAACACTCAGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS-3UTR GCA 90 bp | GTGGGCTCGCATTTGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGATCTAGCTCCTGCCAACTTGGATaGAGAAGTCTCCTCGTATGG | + |
Preference number: 4 (lower is better) Translates to: VGSHLPSQLVGCLLRGSSSCQLG*RSLLVW Trigger: CCATACGAGGAGACTTCTGCATCCAAGTTGGCAGGA...GCTAGATCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | CTTCATTCTCAGCCTGAAGTGTGTGTGGGCTCGCATTaGCCCAGCCAGCTGGTTGGTTGCCTTTTGAGAGGA | + |
Preference number: 4 (lower is better) Translates to: LHSQPEVCVGSH*PSQLVGCLLRG Trigger: TCCTCTCAAAAGGCAACCAACCAGCTGGCTGGGCAAATGCGAGCCCACACACACTTCAGGCTGAGAATGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | AGGCCTGTCAACTTGCAGTCTTTACCTCCTGTCTTCTaGGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGT | + |
Preference number: 4 (lower is better) Translates to: RPVNLQSLPPVF*ASHQYPKGALS Trigger: ACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGACTGCAAGTTGACAGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS-3UTR TCA 90 bp | GGTTACCCCTTTGTCAGGTCACATACCTCCCTACCCCACAGTAGAAGGACCCTTCTTGAGAAGGTCCTCTaGAGCCTGCAGAAACTTCAG | + |
Preference number: 4 (lower is better) Translates to: GYPFVRSHTSLPHSRRTLLEKVL*SLQKLQ Trigger: CTGAAGTTTCTGCAGGCTTCAGAGGACCTTCTCAAG...AAGGGTCCTTCTACTGTGGGGTAGGGAGGTATGTGACCTGACAAAGGGGTAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS-3UTR TCA 90 bp | CTACTCAGGTGGGTAACAGCCCATCACACCTCTCCACTGTCCTACACCTCAATTCAGTGTAGTGCTCCTTaGGAAGGTCCTCTGAAGCCT | + |
Preference number: 4 (lower is better) Translates to: LLRWVTAHHTSPLSYTSIQCSAP*EGPLKP Trigger: AGGCTTCAGAGGACCTTCTCAAGGAGCACTACACTG...AATTGAGGTGTAGGACAGTGGAGAGGTGTGATGGGCTGTTACCCACCTGAGTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS-3UTR TCA 90 bp | GTAGCATGCACAAGGCCTTGGTCCAACCTCCAGTACTCCAGACTCTGTATTCTCAGCAACCACTGGTCCTaGGTGCATGTATTTCACCAG | + |
Preference number: 4 (lower is better) Translates to: VACTRPWSNLQYSRLCILSNHWS*VHVFHQ Trigger: CTGGTGAAATACATGCACTCAGGACCAGTGGTTGCT...GAGAATACAGAGTCTGGAGTACTGGAGGTTGGACCAAGGCCTTGTGCATGCTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | GAGTCAAAATGCCTGAAACCTCCTTCTCCAGCTCCATaGCATCAGCCCTGGCTAAAGACCTGCTTGGACAGA | + |
Preference number: 4 (lower is better) Translates to: ESKCLKPPSPAP*HQPWLKTCLDR Trigger: TCTGTCCAAGCAGGTCTTTAGCCAGGGCTGATGCAATGGAGCTGGAGAAGGAGGTTTCAGGCATTTTGACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS-3UTR GCA 90 bp | TCTTTACCTCCTGTCTTCTTGGCAAGCCACCAGTACCCTAAAGGTGCCCTCAGTAGGTCCTCTGAAGCCTaGAGAAACTTCAGACCAACA | + |
Preference number: 4 (lower is better) Translates to: SLPPVFLASHQYPKGALSRSSEA*RNFRPT Trigger: TGTTGGTCTGAAGTTTCTGCAGGCTTCAGAGGACCT...ACTGAGGGCACCTTTAGGGTACTGGTGGCTTGCCAAGAAGACAGGAGGTAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS-3UTR GCA 90 bp | ATCACACCTCTCCACTGTCCTACACCTCAATTAGCAGAGCATCCAACTAGGATGACCACTGGTCCTGAGTaGATGTATTTCACCAGGCCA | + |
Preference number: 4 (lower is better) Translates to: ITPLHCPTPQLAEHPTRMTTGPE*MYFTRP Trigger: TGGCCTGGTGAAATACATGCACTCAGGACCAGTGGT...CATCCTAGTTGGATGCTCTGCTAATTGAGGTGTAGGACAGTGGAGAGGTGTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | CAGGTGATAGGAAGGGAGATAGACAAAGAAATGCCCTaGTGTCTCAGGGTGGTGGCTCAAACCACAAATGAA | + |
Preference number: 4 (lower is better) Translates to: QVIGREIDKEMP*CLRVVAQTTNE Trigger: TTCATTTGTGGTTTGAGCCACCACCCTGAGACACAAGGGCATTTCTTTGTCTATCTCCCTTCCTATCACCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | AGTTTTCACAACCTCACACATCCTCCACACAAATTGTaGTCTGACTGTGCCAGGAGAGAACAGAACACAGGT | + |
Preference number: 4 (lower is better) Translates to: SFHNLTHPPHKL*SDCARREQNTG Trigger: ACCTGTGTTCTGTTCTCTCCTGGCACAGTCAGACAACAATTTGTGTGGAGGATGTGTGAGGTTGTGAAAACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | AACAGTTTTCACAACCTCACACATCCTCCACACAAATaGTTGTCTGACTGTGCCAGGAGAGAACAGAACACA | + |
Preference number: 4 (lower is better) Translates to: NSFHNLTHPPHK*LSDCARREQNT Trigger: TGTGTTCTGTTCTCTCCTGGCACAGTCAGACAACAATTTGTGTGGAGGATGTGTGAGGTTGTGAAAACTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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3UTR CAA 72 bp | TGGGATTACAGACATGTGCCACCACTCTCCCATGTTTaGGAGTTACCAAATGTCAACTGTACTGAGAATCTG | + |
Preference number: 4 (lower is better) Translates to: WDYRHVPPLSHV*ELPNVNCTENL Trigger: CAGATTCTCAGTACAGTTGACATTTGGTAACTCCAAAACATGGGAGAGTGGTGGCACATGTCTGTAATCCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS TCA 90 bp | ATCCAGTTCTGCGCACAGCTCTTGTACTCCACCAGCTCCTCAGGCTaGAACCACAAGCTGATCTCCTTCTCTGCGCTCTTTACAGAATCG | + |
Preference number: 5 (lower is better) Translates to: IQFCAQLLYSTSSSG*NHKLISFSALFTES Trigger: CGATTCTGTAAAGAGCGCAGAGAAGGAGATCAGCTTGTGGTTTCAGCCTGAGGAGCTGGTGGAGTACAAGAGCTGTGCGCAGAACTGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS TCA 72 bp | TGCGCACAGCTCTTGTACTCCACCAGCTCCTCAGGCTaGAACCACAAGCTGATCTCCTTCTCTGCGCTCTTT | + |
Preference number: 6 (lower is better) Translates to: CAQLLYSTSSSG*NHKLISFSALF Trigger: AAAGAGCGCAGAGAAGGAGATCAGCTTGTGGTTTCAGCCTGAGGAGCTGGTGGAGTACAAGAGCTGTGCGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135884.8 |
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CDS TCA 72 bp | CCTCTCTCGGTAGAAAACCATAGCAACCACTGGTCCTaGGTGCATGTATTTCACCAGGCCAGTAAAGAAGGG | + |
Preference number: 6 (lower is better) Translates to: PLSVENHSNHWS*VHVFHQASKEG Trigger: CCCTTCTTTACTGGCCTGGTGAAATACATGCACTCAGGACCAGTGGTTGCTATGGTTTTCTACCGAGAGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107844.3 |