Pregenerated sensors for NMB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025723Ensembl transcript IDs: ENSMUST00000026817.11, ENSMUST00000119428.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | CAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGCATCATTAACATTCACTGCTAGGGTTCCATaGTCAGCTTCCCTGGATGGA | + |
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Preference number: 3 (lower is better) Translates to: QGSKKYSRKDFVSASLTFTARVP*SASLDG Trigger: TCCATCCAGGGAAGCTGACAATGGAACCCTAGCAGT...GAATGTTAATGATGCAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| 3UTR-3UTR CAA 90 bp | ATTTTTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGACTGCTAGGGTTCCATaGTCAGCTTCCCTGGATGGA | + |
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Preference number: 3 (lower is better) Translates to: IFIHHFTREARNTAGKTLTARVP*SASLDG Trigger: TCCATCCAGGGAAGCTGACAATGGAACCCTAGCAGT...CAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAAAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| 3UTR GCA 72 bp | GGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTaGATCATTAACATTCCTGGTGACCCAACCAGAAAT | + |
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Preference number: 3 (lower is better) Translates to: GKQEIQQERLCV*IINIPGDPTRN Trigger: ATTTCTGGTTGGGTCACCAGGAATGTTAATGATGCAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR GCA 90 bp | CTTAGGATTTACATCCAGAGGAGGCCACTGCTAGGGTTCCATTGTCAGCTTCCCTCTTGCTTGCTCGGCTaGGGGGCTCCGGGAGATCCC | + |
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Preference number: 4 (lower is better) Translates to: LRIYIQRRPLLGFHCQLPSCLLG*GAPGDP Trigger: GGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGA...GGGAAGCTGACAATGGAACCCTAGCAGTGGCCTCCTCTGGATGTAAATCCTAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR TCA 90 bp | GAGCTTAGGATTTACATCCAGAGGAGGCCACTGCTAGGGTTCCATTGTCAGCTTCCGGGAGATCCCAGTTaGAGGGAGCGACGCCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: ELRIYIQRRPLLGFHCQLPGDPS*RERRRK Trigger: CTTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGG...AAGCTGACAATGGAACCCTAGCAGTGGCCTCCTCTGGATGTAAATCCTAAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR GCA 90 bp | ATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGTCTTGCTTGCTCGGCTaGGGGGCTCCGGGAGATCCC | + |
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Preference number: 4 (lower is better) Translates to: IHHFTREARNTAGKTLCLSCLLG*GAPGDP Trigger: GGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGA...CAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR GCA 90 bp | ATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGCACTCGAATCTTGCTTaGTCGGCTGCGGGGCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: IHHFTREARNTAGKTLCLHSNLA*SAAGLR Trigger: CCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTG...CAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR GCA 90 bp | CACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGCATGGTGCACTCGAATCTTaGTTGCTCGGCTGCGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: HHFTREARNTAGKTLCLHGALES*LLGCGA Trigger: AGCCCCGCAGCCGAGCAAGCAAGATTCGAGTGCACC...ATGCAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR GCA 90 bp | GACTTTGTGTCTGCATCATTAACATTCCTGGTGACCCAACCAGAAATCACAGTACGGTCGCCCAGAGGTTaGCCCGAGGGTGCACTCGAA | + |
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Preference number: 4 (lower is better) Translates to: DFVSASLTFLVTQPEITVRSPRG*PEGALE Trigger: TTCGAGTGCACCCTCGGGGCAACCTCTGGGCGACCG...TACTGTGATTTCTGGTTGGGTCACCAGGAATGTTAATGATGCAGACACAAAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR GCA 90 bp | TTTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCGGTCGCCCAGAGGTTaGCCCGAGGGTGCACTCGAA | + |
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Preference number: 4 (lower is better) Translates to: FIHHFTREARNTAGKTLCRSPRG*PEGALE Trigger: TTCGAGTGCACCCTCGGGGCAACCTCTGGGCGACCG...ACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CCA 90 bp | GCAGTATTTTTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGAGCTCCAGCAGCCTCCTaGATTGGGGGAGCTGGGCCA | + |
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Preference number: 4 (lower is better) Translates to: AVFLFTTSPGKQEIQQERAPAAS*IGGAGP Trigger: TGGCCCAGCTCCCCCAATCCAGGAGGCTGCTGGAGC...TCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAAAAATACTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000119428.2 |
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| CDS-3UTR TCA 90 bp | ATTTTTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGCCGGGAGATCCCAGTTaGAGGGAGCGACGCCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: IFIHHFTREARNTAGKTLPGDPS*RERRRK Trigger: CTTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGG...CAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR TCA 90 bp | GAGCTTAGGATTTACATCCAGAGGAGGCCACTGCTAGGGTTCCATTGTCAGCTTATCCTGAGCAGATCATaGCTCAGCTGTAGTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: ELRIYIQRRPLLGFHCQLILSRS*LSCSLW Trigger: CCAGAGACTACAGCTGAGTCATGATCTGCTCAGGAT...AAGCTGACAATGGAACCCTAGCAGTGGCCTCCTCTGGATGTAAATCCTAAGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR TCA 90 bp | TCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGCATTCGCAGGAGGATCCTaGGCAGATCATGACTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: SPLHQGSKKYSRKDFVSAFAGGS*ADHDSA Trigger: AGCTGAGTCATGATCTGCTCAGGATCCTCCTGCGAA...TGCAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR GCA 90 bp | ATTTTTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGCACTCGAATCTTGCTTaGTCGGCTGCGGGGCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: IFIHHFTREARNTAGKTLHSNLA*SAAGLR Trigger: CCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTG...CAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAAAAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CCA 90 bp | AGTAACAGATTAACACATTTGAGCTTAGGATTTACATCCAGAGGAGGCCACTGCCTGGATTGGGGGAGCTaGGCCACTGAAGTTCATGCC | + |
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Preference number: 4 (lower is better) Translates to: SNRLTHLSLGFTSRGGHCLDWGS*ATEVHA Trigger: GGCATGAACTTCAGTGGCCCAGCTCCCCCAATCCAG...GCAGTGGCCTCCTCTGGATGTAAATCCTAAGCTCAAATGTGTTAATCTGTTACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CCA 90 bp | ACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGCATCATTCCTCCTGTACTGGATTaGGGGAGCTGGGCCACTGAA | + |
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Preference number: 4 (lower is better) Translates to: TSPGKQEIQQERLCVCIIPPVLD*GSWATE Trigger: TTCAGTGGCCCAGCTCCCCCAATCCAGTACAGGAGG...AATGATGCAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026817.11 |
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| CDS-3UTR CCA 90 bp | GTATTTTTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTAGCAGCCTCCTGGATTaGGGGAGCTGGGCCACTGAA | + |
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Preference number: 4 (lower is better) Translates to: VFLFTTSPGKQEIQQERLSSLLD*GSWATE Trigger: TTCAGTGGCCCAGCTCCCCCAATCCAGGAGGCTGCT...AAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAAAAATAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000119428.2 |
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| CDS-3UTR CCA 90 bp | GTATTTTTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTCTGGATTGGGGGAGCTaGGCCACTGAAGTTCATGCC | + |
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Preference number: 4 (lower is better) Translates to: VFLFTTSPGKQEIQQERLLDWGS*ATEVHA Trigger: GGCATGAACTTCAGTGGCCCAGCTCCCCCAATCCAG...AAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAAAAATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR TCA 90 bp | CAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGCATCATTAACATTCATCCTGAGCAGATCATaGCTCAGCTGTAGTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QGSKKYSRKDFVSASLTFILSRS*LSCSLW Trigger: CCAGAGACTACAGCTGAGTCATGATCTGCTCAGGAT...GAATGTTAATGATGCAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CCA 90 bp | TTTGAGCTTAGGATTTACATCCAGAGGAGGCCACTGCTAGGGTTCCATTGTCAGGGTTTGTTCCATTATTaGCATCACTTCTGCAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: FELRIYIQRRPLLGFHCQGLFHY*HHFCSS Trigger: ACTACTGCAGAAGTGATGCCAATAATGGAACAAACC...CTGACAATGGAACCCTAGCAGTGGCCTCCTCTGGATGTAAATCCTAAGCTCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000119428.2 |
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| CDS GCA 90 bp | ACCGGTCGCCCAGAGGTTGCCCCGAGGGTGCACTCGAATCTTGCTTaGTCGGCTGCGGGGCTCCGGGAGATCCCAGTTGAAGGGAGCGAC | + |
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Preference number: 5 (lower is better) Translates to: TGRPEVAPRVHSNLA*SAAGLREIPVEGSD Trigger: GTCGCTCCCTTCAACTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTGCACCCTCGGGGCAACCTCTGGGCGACCGGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS TCA 90 bp | CTCGAATCTTGCTTGCTCGGCTGCGGGGCTCCGGGAGATCCCAGTTaGAGGGAGCGACGCCGGAAGCGAACAATGCGAAGAGCAGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: LESCLLGCGAPGDPS*RERRRKRTMRRAGD Trigger: GTCTCCTGCTCTTCGCATTGTTCGCTTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS TCA 90 bp | TTCATGCCTAGAGCTTTCTTTCGCAGGAGGATCCTGAGCAGATCATaGCTCAGCTGTAGTCTCTGGTCCCTCGGGGTGTTAGGGGGTGCT | + |
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Preference number: 5 (lower is better) Translates to: FMPRAFFRRRILSRS*LSCSLWSLGVLGGA Trigger: AGCACCCCCTAACACCCCGAGGGACCAGAGACTACAGCTGAGTCATGATCTGCTCAGGATCCTCCTGCGAAAGAAAGCTCTAGGCATGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CAA 90 bp | CCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCTGCATCATCCGGGAGATCCCAGTaGAAGGGAGCGACGCCGGAA | + |
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Preference number: 5 (lower is better) Translates to: PLHQGSKKYSRKDFVSASSGRSQ*KGATPE Trigger: TTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGGA...TGATGCAGACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CAA 90 bp | CACAGTAACAGATTAACACATTTGAGCTTAGGATTTACATCCAGAGGAGGCCACGCACTCGAATCTTGCTaGCTCGGCTGCGGGGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: HSNRLTHLSLGFTSRGGHALESC*LGCGAP Trigger: CGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTGC...GTGGCCTCCTCTGGATGTAAATCCTAAGCTCAAATGTGTTAATCTGTTACTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CAA 90 bp | TTATTCACCACTTCACCAGGGAAGCAAGAAATACAGCAGGAAAGACTTTGTGTCGGGTGCACTCGAATCTaGCTTGCTCGGCTGCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: LFTTSPGKQEIQQERLCVGCTRI*LARLRG Trigger: GCCCCGCAGCCGAGCAAGCAAGATTCGAGTGCACCC...GACACAAAGTCTTTCCTGCTGTATTTCTTGCTTCCCTGGTGAAGTGGTGAATAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CAA 90 bp | AATCACAGTAACAGATTAACACATTTGAGCTTAGGATTTACATCCAGAGGAGGCTCCGGGAGATCCCAGTaGAAGGGAGCGACGCCGGAA | + |
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Preference number: 5 (lower is better) Translates to: NHSNRLTHLSLGFTSRGGSGRSQ*KGATPE Trigger: TTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGGA...GCCTCCTCTGGATGTAAATCCTAAGCTCAAATGTGTTAATCTGTTACTGTGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS-3UTR CAA 90 bp | CCAACCAGAAATCACAGTAACAGATTAACACATTTGAGCTTAGGATTTACATCCGCACTCGAATCTTGCTaGCTCGGCTGCGGGGCTCCG | + |
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Preference number: 5 (lower is better) Translates to: PTRNHSNRLTHLSLGFTSALESC*LGCGAP Trigger: CGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTGC...GGATGTAAATCCTAAGCTCAAATGTGTTAATCTGTTACTGTGATTTCTGGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS CAA 72 bp | GTCGCCCAGAGGTTGCCCCGAGGGTGCACTCGAATCTaGCTTGCTCGGCTGCGGGGCTCCGGGAGATCCCAG | + |
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Preference number: 6 (lower is better) Translates to: VAQRLPRGCTRI*LARLRGSGRSQ Trigger: CTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTGCACCCTCGGGGCAACCTCTGGGCGAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS GCA 72 bp | TCGCCCAGAGGTTGCCCCGAGGGTGCACTCGAATCTTaGTTGCTCGGCTGCGGGGCTCCGGGAGATCCCAGT | + |
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Preference number: 6 (lower is better) Translates to: SPRGCPEGALES*LLGCGAPGDPS Trigger: ACTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTGCACCCTCGGGGCAACCTCTGGGCGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS TCA 72 bp | TGCTTGCTCGGCTGCGGGGCTCCGGGAGATCCCAGTTaGAGGGAGCGACGCCGGAAGCGAACAATGCGAAGA | + |
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Preference number: 6 (lower is better) Translates to: CLLGCGAPGDPS*RERRRKRTMRR Trigger: TCTTCGCATTGTTCGCTTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS GCA 72 bp | CCAGAGGTTGCCCCGAGGGTGCACTCGAATCTTGCTTaGTCGGCTGCGGGGCTCCGGGAGATCCCAGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: PEVAPRVHSNLA*SAAGLREIPVE Trigger: TTCAACTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGTGCACCCTCGGGGCAACCTCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS CAA 72 bp | TTGCTTGCTCGGCTGCGGGGCTCCGGGAGATCCCAGTaGAAGGGAGCGACGCCGGAAGCGAACAATGCGAAG | + |
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Preference number: 6 (lower is better) Translates to: LLARLRGSGRSQ*KGATPEANNAK Trigger: CTTCGCATTGTTCGCTTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS CAA 90 bp | ACTCGAATCTTGCTTGCTCGGCTGCGGGGCTCCGGGAGATCCCAGTaGAAGGGAGCGACGCCGGAAGCGAACAATGCGAAGAGCAGGAGA | + |
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Preference number: 6 (lower is better) Translates to: TRILLARLRGSGRSQ*KGATPEANNAKSRR Trigger: TCTCCTGCTCTTCGCATTGTTCGCTTCCGGCGTCGCTCCCTTCAACTGGGATCTCCCGGAGCCCCGCAGCCGAGCAAGCAAGATTCGAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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| CDS CCA 72 bp | CACTTCTGCAGTAGTGGCTCCAGCAGCCTCCTGTACTaGATTGGGGGAGCTGGGCCACTGAAGTTCATGCCT | + |
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Preference number: 6 (lower is better) Translates to: HFCSSGSSSLLY*IGGAGPLKFMP Trigger: AGGCATGAACTTCAGTGGCCCAGCTCCCCCAATCCAGTACAGGAGGCTGCTGGAGCCACTACTGCAGAAGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026817.11 |
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| CDS TCA 72 bp | GCAGCCTCCTGTACTGGATTGGGGGAGCTGGGCCACTaGAGTTCATGCCTAGAGCTTTCTTTCGCAGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: AASCTGLGELGH*SSCLELSFAGG Trigger: TCCTCCTGCGAAAGAAAGCTCTAGGCATGAACTTCAGTGGCCCAGCTCCCCCAATCCAGTACAGGAGGCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026817.11 |
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| CDS TCA 72 bp | AGTTCATGCCTAGAGCTTTCTTTCGCAGGAGGATCCTaGGCAGATCATGACTCAGCTGTAGTCTCTGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: SSCLELSFAGGS*ADHDSAVVSGP Trigger: GGGACCAGAGACTACAGCTGAGTCATGATCTGCTCAGGATCCTCCTGCGAAAGAAAGCTCTAGGCATGAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026817.11 ENSMUST00000119428.2 |
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